Query 040742
Match_columns 581
No_of_seqs 309 out of 3403
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 18:23:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 8.5E-82 2.9E-86 696.7 27.0 506 1-581 60-581 (595)
2 3f8t_A Predicted ATPase involv 100.0 4.8E-66 1.6E-70 537.8 27.6 374 91-581 89-477 (506)
3 1ltl_A DNA replication initiat 100.0 2.1E-40 7.2E-45 331.8 24.1 214 1-250 65-279 (279)
4 2vl6_A SSO MCM N-TER, minichro 100.0 6.2E-37 2.1E-41 305.5 19.9 187 1-198 66-265 (268)
5 2r44_A Uncharacterized protein 99.9 4.1E-25 1.4E-29 227.9 27.6 263 243-580 16-290 (331)
6 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 2.3E-24 7.8E-29 232.0 25.2 262 243-581 11-280 (500)
7 1g8p_A Magnesium-chelatase 38 99.9 9.3E-23 3.2E-27 211.5 20.0 255 254-580 24-315 (350)
8 3k1j_A LON protease, ATP-depen 99.8 1.6E-19 5.4E-24 200.6 12.7 232 254-580 41-368 (604)
9 1ofh_A ATP-dependent HSL prote 99.7 1.3E-17 4.5E-22 169.4 12.5 263 246-580 7-292 (310)
10 1um8_A ATP-dependent CLP prote 99.7 2.8E-17 9.5E-22 172.2 13.4 270 247-580 14-358 (376)
11 2bjv_A PSP operon transcriptio 99.7 2.2E-16 7.4E-21 157.2 15.4 234 254-580 6-250 (265)
12 1ojl_A Transcriptional regulat 99.7 4.9E-16 1.7E-20 157.7 15.4 230 255-580 3-245 (304)
13 3hws_A ATP-dependent CLP prote 99.7 2E-17 6.9E-22 172.5 4.5 260 248-571 9-326 (363)
14 3pfi_A Holliday junction ATP-d 99.6 3.2E-15 1.1E-19 154.1 17.5 157 253-447 28-192 (338)
15 4fcw_A Chaperone protein CLPB; 99.6 3.3E-15 1.1E-19 151.9 17.1 201 244-453 7-230 (311)
16 1r6b_X CLPA protein; AAA+, N-t 99.6 4.9E-14 1.7E-18 160.9 18.1 199 245-453 449-667 (758)
17 3syl_A Protein CBBX; photosynt 99.5 1.3E-14 4.3E-19 147.5 11.0 224 244-570 21-265 (309)
18 4b4t_J 26S protease regulatory 99.5 7.4E-14 2.5E-18 144.7 16.6 164 254-452 148-332 (405)
19 3m6a_A ATP-dependent protease 99.5 1.8E-14 6.3E-19 157.5 10.3 172 250-449 77-263 (543)
20 4b4t_I 26S protease regulatory 99.5 4.2E-14 1.4E-18 146.9 12.3 163 254-452 182-366 (437)
21 4b4t_K 26S protease regulatory 99.5 8.9E-14 3E-18 146.1 14.8 166 254-453 172-358 (428)
22 3pxi_A Negative regulator of g 99.5 7.9E-14 2.7E-18 159.0 15.4 185 248-453 485-676 (758)
23 1hqc_A RUVB; extended AAA-ATPa 99.5 1.9E-13 6.6E-18 139.6 16.6 152 254-443 12-172 (324)
24 4b4t_M 26S protease regulatory 99.5 1.4E-13 4.7E-18 144.8 14.7 165 254-453 181-366 (434)
25 4b4t_H 26S protease regulatory 99.5 2.1E-13 7.2E-18 143.1 15.7 164 254-452 209-393 (467)
26 4b4t_L 26S protease subunit RP 99.5 6.7E-13 2.3E-17 139.7 18.9 163 254-453 181-366 (437)
27 3h4m_A Proteasome-activating n 99.5 1.2E-13 4.1E-18 138.6 12.5 169 254-452 17-201 (285)
28 3pvs_A Replication-associated 99.5 1.3E-13 4.3E-18 147.0 12.9 205 254-580 26-237 (447)
29 1ny5_A Transcriptional regulat 99.5 1.6E-13 5.5E-18 143.9 11.7 207 290-580 161-380 (387)
30 3vfd_A Spastin; ATPase, microt 99.5 4.3E-13 1.5E-17 141.0 15.0 168 254-453 115-296 (389)
31 3dzd_A Transcriptional regulat 99.5 8.8E-13 3E-17 137.2 16.5 197 290-567 153-361 (368)
32 1xwi_A SKD1 protein; VPS4B, AA 99.5 1.5E-12 5E-17 133.2 17.6 166 254-452 12-192 (322)
33 3eie_A Vacuolar protein sortin 99.4 1.7E-13 5.7E-18 140.3 9.4 163 254-453 18-198 (322)
34 2qz4_A Paraplegin; AAA+, SPG7, 99.4 7.2E-13 2.5E-17 131.0 13.4 166 254-453 6-191 (262)
35 1g41_A Heat shock protein HSLU 99.4 2.4E-12 8.2E-17 135.6 17.9 70 248-318 9-79 (444)
36 1lv7_A FTSH; alpha/beta domain 99.4 1.5E-12 5.2E-17 128.6 14.9 162 254-451 12-194 (257)
37 3b9p_A CG5977-PA, isoform A; A 99.4 2E-12 6.8E-17 130.5 16.0 168 254-453 21-203 (297)
38 3d8b_A Fidgetin-like protein 1 99.4 9.5E-13 3.3E-17 136.6 13.5 169 254-453 84-265 (357)
39 3uk6_A RUVB-like 2; hexameric 99.4 4.8E-12 1.6E-16 131.7 16.5 133 354-580 190-323 (368)
40 2qp9_X Vacuolar protein sortin 99.4 1.5E-12 5.2E-17 135.0 12.2 168 252-452 49-230 (355)
41 1qvr_A CLPB protein; coiled co 99.4 1.6E-12 5.3E-17 150.1 13.3 193 250-453 554-771 (854)
42 2zan_A Vacuolar protein sortin 99.4 5.4E-12 1.8E-16 134.7 16.5 166 254-452 134-314 (444)
43 1in4_A RUVB, holliday junction 99.3 1.7E-11 5.8E-16 126.0 17.3 156 255-447 26-188 (334)
44 3n70_A Transport activator; si 99.3 1.7E-12 5.8E-17 116.7 6.7 132 255-432 2-137 (145)
45 2c9o_A RUVB-like 1; hexameric 99.3 3.3E-11 1.1E-15 129.2 16.6 134 355-581 297-431 (456)
46 3pxg_A Negative regulator of g 99.3 2.3E-11 8E-16 130.6 15.1 209 253-561 179-404 (468)
47 3co5_A Putative two-component 99.3 6E-13 2.1E-17 119.4 1.8 131 255-434 5-137 (143)
48 2chg_A Replication factor C sm 99.3 3.7E-11 1.3E-15 114.7 13.6 142 253-442 16-164 (226)
49 2ce7_A Cell division protein F 99.3 2.6E-11 8.8E-16 129.5 13.3 161 254-452 16-199 (476)
50 3u61_B DNA polymerase accessor 99.2 5.2E-11 1.8E-15 121.6 14.3 150 253-451 25-177 (324)
51 3t15_A Ribulose bisphosphate c 99.2 9.6E-12 3.3E-16 125.4 7.7 145 290-453 37-199 (293)
52 1sxj_D Activator 1 41 kDa subu 99.2 4.5E-11 1.5E-15 123.4 12.0 144 253-443 36-196 (353)
53 2dhr_A FTSH; AAA+ protein, hex 99.2 1.3E-10 4.3E-15 124.9 15.8 156 254-448 31-210 (499)
54 2r62_A Cell division protease 99.2 4.3E-12 1.5E-16 126.1 3.7 129 291-452 46-196 (268)
55 3cf0_A Transitional endoplasmi 99.2 6.1E-11 2.1E-15 120.0 12.1 164 254-453 15-200 (301)
56 4akg_A Glutathione S-transfera 99.2 1.2E-10 4E-15 145.5 15.3 152 291-456 1269-1435(2695)
57 1iqp_A RFCS; clamp loader, ext 99.2 6.6E-11 2.2E-15 120.6 10.2 148 252-447 23-177 (327)
58 3hu3_A Transitional endoplasmi 99.1 1.2E-10 4.2E-15 125.2 11.4 161 254-451 204-384 (489)
59 3pxi_A Negative regulator of g 99.1 3.2E-10 1.1E-14 129.3 15.0 191 253-540 179-386 (758)
60 2chq_A Replication factor C sm 99.1 2.1E-10 7E-15 116.5 11.6 146 254-447 17-169 (319)
61 1ixz_A ATP-dependent metallopr 99.1 9.6E-11 3.3E-15 115.4 8.7 123 291-448 51-195 (254)
62 2v1u_A Cell division control p 99.1 2.4E-10 8.1E-15 119.2 10.5 168 254-449 19-211 (387)
63 3vkg_A Dynein heavy chain, cyt 99.1 1.5E-09 5.1E-14 136.3 18.9 149 291-455 1306-1472(3245)
64 4akg_A Glutathione S-transfera 99.1 2E-09 6.9E-14 134.5 20.0 184 291-568 647-841 (2695)
65 1r6b_X CLPA protein; AAA+, N-t 99.1 8.8E-10 3E-14 125.7 15.4 226 246-560 178-430 (758)
66 1iy2_A ATP-dependent metallopr 99.1 3.4E-10 1.2E-14 113.1 10.2 128 291-449 75-220 (278)
67 1njg_A DNA polymerase III subu 99.1 3.4E-09 1.2E-13 102.2 16.7 146 254-443 23-189 (250)
68 3cf2_A TER ATPase, transitiona 99.1 1.8E-10 6.1E-15 129.7 8.2 157 255-447 478-656 (806)
69 3cf2_A TER ATPase, transitiona 99.0 2.7E-10 9.4E-15 128.2 8.9 161 254-449 204-382 (806)
70 1sxj_C Activator 1 40 kDa subu 99.0 9.3E-10 3.2E-14 113.2 11.8 152 253-452 24-182 (340)
71 3bos_A Putative DNA replicatio 99.0 4E-09 1.4E-13 102.1 15.6 174 291-580 54-236 (242)
72 1qvr_A CLPB protein; coiled co 99.0 1.6E-09 5.3E-14 125.0 13.7 211 242-541 158-394 (854)
73 1d2n_A N-ethylmaleimide-sensit 99.0 1.9E-10 6.6E-15 114.4 3.3 123 290-440 65-200 (272)
74 2qby_B CDC6 homolog 3, cell di 98.9 1.6E-09 5.6E-14 112.9 10.2 163 254-451 20-209 (384)
75 1jr3_A DNA polymerase III subu 98.9 1.8E-08 6.2E-13 104.5 17.5 154 253-448 15-187 (373)
76 2z4s_A Chromosomal replication 98.9 1.1E-09 3.8E-14 116.6 8.2 182 291-580 132-325 (440)
77 1sxj_B Activator 1 37 kDa subu 98.9 6.2E-09 2.1E-13 105.7 12.4 151 254-451 21-178 (323)
78 1l8q_A Chromosomal replication 98.9 2.9E-09 9.8E-14 108.7 9.8 132 291-452 39-179 (324)
79 2x8a_A Nuclear valosin-contain 98.9 2.9E-09 1E-13 106.0 8.7 162 254-453 10-192 (274)
80 1jbk_A CLPB protein; beta barr 98.9 1.7E-09 5.9E-14 100.5 6.4 56 244-313 12-67 (195)
81 2p65_A Hypothetical protein PF 98.8 3.8E-10 1.3E-14 104.7 0.2 55 245-313 13-67 (187)
82 3te6_A Regulatory protein SIR3 98.8 1.2E-08 4E-13 103.2 10.7 144 291-454 47-213 (318)
83 1fnn_A CDC6P, cell division co 98.8 2.1E-08 7.2E-13 104.5 12.8 167 254-447 17-201 (389)
84 1sxj_E Activator 1 40 kDa subu 98.8 5.4E-08 1.8E-12 100.3 15.2 157 254-452 14-206 (354)
85 2qby_A CDC6 homolog 1, cell di 98.7 5.1E-08 1.7E-12 101.3 11.2 50 254-313 20-69 (386)
86 1sxj_A Activator 1 95 kDa subu 98.7 1.3E-07 4.6E-12 102.6 14.3 125 254-378 39-177 (516)
87 1ypw_A Transitional endoplasmi 98.6 5.9E-10 2E-14 127.2 -7.4 160 254-449 477-658 (806)
88 2gno_A DNA polymerase III, gam 98.6 2.2E-07 7.5E-12 93.7 11.0 139 258-447 1-148 (305)
89 3vkg_A Dynein heavy chain, cyt 98.6 6.3E-07 2.2E-11 113.0 17.4 132 291-447 606-748 (3245)
90 1ypw_A Transitional endoplasmi 98.5 9.3E-08 3.2E-12 109.1 7.0 162 254-452 204-385 (806)
91 1a5t_A Delta prime, HOLB; zinc 98.5 6.7E-07 2.3E-11 91.5 11.5 143 259-445 7-173 (334)
92 2kjq_A DNAA-related protein; s 98.4 3.8E-07 1.3E-11 81.9 7.1 99 291-431 38-141 (149)
93 1tue_A Replication protein E1; 98.1 2.4E-06 8.2E-11 79.9 6.1 115 291-436 60-177 (212)
94 1u0j_A DNA replication protein 98.0 0.0001 3.5E-09 72.1 16.0 121 291-435 106-227 (267)
95 1w5s_A Origin recognition comp 97.9 2.7E-05 9.4E-10 81.4 9.2 49 254-313 22-76 (412)
96 3ec2_A DNA replication protein 97.8 1.9E-06 6.3E-11 79.7 -0.9 97 291-406 40-144 (180)
97 2r2a_A Uncharacterized protein 97.4 0.00028 9.5E-09 66.2 7.9 120 291-437 7-152 (199)
98 2orw_A Thymidine kinase; TMTK, 96.5 0.0069 2.4E-07 55.8 8.0 21 291-311 5-25 (184)
99 2w58_A DNAI, primosome compone 96.4 0.0014 4.9E-08 61.1 2.8 23 291-313 56-78 (202)
100 3upu_A ATP-dependent DNA helic 96.2 0.007 2.4E-07 64.3 7.7 23 291-313 47-69 (459)
101 1qhx_A CPT, protein (chloramph 96.1 0.0038 1.3E-07 56.8 4.1 28 291-318 5-32 (178)
102 2qgz_A Helicase loader, putati 96.0 0.0027 9.1E-08 63.8 2.8 24 291-314 154-177 (308)
103 1kag_A SKI, shikimate kinase I 96.0 0.0049 1.7E-07 55.7 4.1 25 291-315 6-30 (173)
104 3vaa_A Shikimate kinase, SK; s 95.9 0.0044 1.5E-07 57.7 3.9 27 291-317 27-53 (199)
105 3trf_A Shikimate kinase, SK; a 95.9 0.0043 1.5E-07 56.8 3.7 27 291-317 7-33 (185)
106 1jr3_D DNA polymerase III, del 95.8 0.018 6.2E-07 58.4 8.3 75 291-378 20-103 (343)
107 2bdt_A BH3686; alpha-beta prot 95.7 0.007 2.4E-07 55.7 4.2 32 291-322 4-35 (189)
108 1zuh_A Shikimate kinase; alpha 95.7 0.0062 2.1E-07 54.9 3.7 28 291-318 9-36 (168)
109 1via_A Shikimate kinase; struc 95.7 0.0056 1.9E-07 55.6 3.4 26 291-316 6-31 (175)
110 3e1s_A Exodeoxyribonuclease V, 95.7 0.011 3.9E-07 64.4 6.2 23 291-313 206-228 (574)
111 3tqc_A Pantothenate kinase; bi 95.6 0.013 4.3E-07 59.0 5.9 81 223-314 33-117 (321)
112 3kb2_A SPBC2 prophage-derived 95.6 0.0065 2.2E-07 54.6 3.5 26 291-316 3-28 (173)
113 2qen_A Walker-type ATPase; unk 95.6 0.017 5.7E-07 58.3 6.9 51 254-321 12-62 (350)
114 3iij_A Coilin-interacting nucl 95.5 0.0078 2.7E-07 54.9 3.4 27 291-317 13-39 (180)
115 1gvn_B Zeta; postsegregational 95.4 0.025 8.4E-07 56.1 7.1 32 290-321 34-66 (287)
116 1ye8_A Protein THEP1, hypothet 95.4 0.0085 2.9E-07 54.9 3.5 24 291-314 2-25 (178)
117 1ly1_A Polynucleotide kinase; 95.4 0.0078 2.7E-07 54.6 3.2 22 291-312 4-25 (181)
118 3dl0_A Adenylate kinase; phosp 95.4 0.011 3.7E-07 55.6 4.3 27 291-317 2-28 (216)
119 2iyv_A Shikimate kinase, SK; t 95.3 0.0091 3.1E-07 54.6 3.5 27 291-317 4-30 (184)
120 1htw_A HI0065; nucleotide-bind 95.3 0.0095 3.3E-07 53.4 3.5 24 291-314 35-58 (158)
121 3lw7_A Adenylate kinase relate 95.3 0.011 3.8E-07 53.1 4.0 26 291-317 3-28 (179)
122 4eun_A Thermoresistant glucoki 95.3 0.011 3.6E-07 55.1 3.8 30 291-321 31-60 (200)
123 2p5t_B PEZT; postsegregational 95.3 0.022 7.7E-07 55.1 6.2 33 290-322 33-66 (253)
124 3tr0_A Guanylate kinase, GMP k 95.3 0.013 4.6E-07 54.3 4.4 30 291-321 9-38 (205)
125 1y63_A LMAJ004144AAA protein; 95.2 0.011 3.8E-07 54.2 3.7 25 290-314 11-36 (184)
126 1e6c_A Shikimate kinase; phosp 95.2 0.011 3.9E-07 53.2 3.5 26 291-316 4-29 (173)
127 3t61_A Gluconokinase; PSI-biol 95.1 0.011 3.8E-07 54.9 3.5 25 291-315 20-44 (202)
128 2vli_A Antibiotic resistance p 95.1 0.01 3.5E-07 54.0 3.1 28 291-318 7-34 (183)
129 2rhm_A Putative kinase; P-loop 95.1 0.01 3.6E-07 54.4 3.1 25 291-315 7-31 (193)
130 1knq_A Gluconate kinase; ALFA/ 95.1 0.012 4E-07 53.3 3.4 30 291-321 10-39 (175)
131 3cm0_A Adenylate kinase; ATP-b 95.1 0.012 4.3E-07 53.6 3.6 25 291-315 6-30 (186)
132 3fb4_A Adenylate kinase; psych 95.1 0.013 4.4E-07 55.1 3.7 27 291-317 2-28 (216)
133 2ze6_A Isopentenyl transferase 95.1 0.012 4.1E-07 57.1 3.6 27 291-317 3-29 (253)
134 2cdn_A Adenylate kinase; phosp 95.0 0.013 4.3E-07 54.5 3.5 28 290-317 21-48 (201)
135 1kgd_A CASK, peripheral plasma 95.0 0.013 4.5E-07 53.5 3.6 25 291-315 7-31 (180)
136 3nwj_A ATSK2; P loop, shikimat 95.0 0.014 4.8E-07 56.6 3.9 27 291-317 50-76 (250)
137 2pt5_A Shikimate kinase, SK; a 95.0 0.014 4.9E-07 52.3 3.7 27 291-317 2-28 (168)
138 1zp6_A Hypothetical protein AT 95.0 0.012 4E-07 54.1 3.1 24 291-314 11-34 (191)
139 1ex7_A Guanylate kinase; subst 94.9 0.019 6.5E-07 52.9 4.3 28 291-318 3-30 (186)
140 1aky_A Adenylate kinase; ATP:A 94.9 0.016 5.4E-07 54.7 3.8 27 290-316 5-31 (220)
141 2qor_A Guanylate kinase; phosp 94.9 0.015 5.1E-07 54.3 3.6 25 291-315 14-38 (204)
142 3sr0_A Adenylate kinase; phosp 94.9 0.014 4.6E-07 54.9 3.2 25 291-315 2-26 (206)
143 1tev_A UMP-CMP kinase; ploop, 94.9 0.015 5.1E-07 53.3 3.5 25 291-315 5-29 (196)
144 2c95_A Adenylate kinase 1; tra 94.8 0.014 4.7E-07 53.7 3.1 27 291-317 11-37 (196)
145 3jvv_A Twitching mobility prot 94.8 0.039 1.3E-06 56.3 6.7 24 291-314 125-148 (356)
146 1nks_A Adenylate kinase; therm 94.8 0.011 3.8E-07 54.1 2.3 24 291-314 3-26 (194)
147 1kht_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 53.1 3.1 24 291-314 5-28 (192)
148 2jaq_A Deoxyguanosine kinase; 94.7 0.018 6E-07 53.3 3.6 25 291-315 2-26 (205)
149 1zd8_A GTP:AMP phosphotransfer 94.7 0.018 6.2E-07 54.6 3.7 26 291-316 9-34 (227)
150 2bwj_A Adenylate kinase 5; pho 94.7 0.015 5.3E-07 53.6 3.1 25 291-315 14-38 (199)
151 1ak2_A Adenylate kinase isoenz 94.6 0.019 6.6E-07 54.8 3.6 27 290-316 17-43 (233)
152 1qf9_A UMP/CMP kinase, protein 94.6 0.017 5.7E-07 52.9 3.1 25 291-315 8-32 (194)
153 3uie_A Adenylyl-sulfate kinase 94.6 0.015 5.1E-07 54.1 2.7 23 291-313 27-49 (200)
154 2plr_A DTMP kinase, probable t 94.6 0.016 5.5E-07 54.0 2.9 25 291-315 6-30 (213)
155 1z6g_A Guanylate kinase; struc 94.5 0.03 1E-06 52.9 4.7 29 291-319 25-53 (218)
156 3tau_A Guanylate kinase, GMP k 94.5 0.018 6.3E-07 53.9 3.2 25 291-315 10-34 (208)
157 1e4v_A Adenylate kinase; trans 94.5 0.019 6.6E-07 53.9 3.3 27 291-317 2-28 (214)
158 1cke_A CK, MSSA, protein (cyti 94.5 0.019 6.5E-07 54.3 3.2 26 291-316 7-32 (227)
159 1ukz_A Uridylate kinase; trans 94.5 0.025 8.7E-07 52.4 4.1 26 290-315 16-41 (203)
160 3be4_A Adenylate kinase; malar 94.4 0.02 6.8E-07 54.0 3.3 28 290-317 6-33 (217)
161 2bbw_A Adenylate kinase 4, AK4 94.4 0.018 6.2E-07 55.4 2.9 24 291-314 29-52 (246)
162 3umf_A Adenylate kinase; rossm 94.3 0.019 6.4E-07 54.4 2.8 25 291-315 31-55 (217)
163 1zak_A Adenylate kinase; ATP:A 94.3 0.017 5.7E-07 54.6 2.5 25 291-315 7-31 (222)
164 3tlx_A Adenylate kinase 2; str 94.3 0.023 7.9E-07 54.7 3.4 28 290-317 30-57 (243)
165 3a00_A Guanylate kinase, GMP k 94.3 0.023 7.8E-07 52.2 3.2 25 291-315 3-27 (186)
166 2xb4_A Adenylate kinase; ATP-b 94.2 0.026 9E-07 53.4 3.6 25 291-315 2-26 (223)
167 2j41_A Guanylate kinase; GMP, 94.2 0.025 8.7E-07 52.4 3.4 23 291-313 8-30 (207)
168 4a74_A DNA repair and recombin 94.2 0.036 1.2E-06 52.2 4.5 23 291-313 27-49 (231)
169 3ney_A 55 kDa erythrocyte memb 94.1 0.039 1.3E-06 51.3 4.4 25 291-315 21-45 (197)
170 2b8t_A Thymidine kinase; deoxy 94.1 0.037 1.3E-06 52.5 4.3 23 291-313 14-36 (223)
171 2if2_A Dephospho-COA kinase; a 94.0 0.033 1.1E-06 51.7 3.8 24 291-315 3-26 (204)
172 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.037 1.3E-06 53.8 4.3 22 291-312 6-27 (260)
173 1lvg_A Guanylate kinase, GMP k 94.0 0.026 8.7E-07 52.5 2.9 24 291-314 6-29 (198)
174 2fna_A Conserved hypothetical 93.9 0.043 1.5E-06 55.3 4.7 51 254-322 13-64 (357)
175 1nn5_A Similar to deoxythymidy 93.9 0.029 9.8E-07 52.4 3.2 24 290-313 10-33 (215)
176 1znw_A Guanylate kinase, GMP k 93.9 0.032 1.1E-06 52.1 3.5 24 291-314 22-45 (207)
177 2z0h_A DTMP kinase, thymidylat 93.9 0.038 1.3E-06 50.7 3.9 23 291-313 2-24 (197)
178 2ga8_A Hypothetical 39.9 kDa p 93.9 0.039 1.3E-06 56.0 4.1 25 291-315 26-50 (359)
179 1jjv_A Dephospho-COA kinase; P 93.8 0.04 1.4E-06 51.2 4.0 24 291-315 4-27 (206)
180 2yvu_A Probable adenylyl-sulfa 93.8 0.027 9.3E-07 51.5 2.7 25 290-314 14-38 (186)
181 2pbr_A DTMP kinase, thymidylat 93.8 0.035 1.2E-06 50.8 3.5 23 291-313 2-24 (195)
182 2v54_A DTMP kinase, thymidylat 93.8 0.033 1.1E-06 51.6 3.2 23 291-313 6-28 (204)
183 3r20_A Cytidylate kinase; stru 93.7 0.035 1.2E-06 53.1 3.3 28 290-317 10-37 (233)
184 2v9p_A Replication protein E1; 93.7 0.041 1.4E-06 54.8 4.0 24 291-314 128-151 (305)
185 3b85_A Phosphate starvation-in 93.7 0.033 1.1E-06 52.3 3.1 22 291-312 24-45 (208)
186 1s96_A Guanylate kinase, GMP k 93.7 0.038 1.3E-06 52.4 3.5 25 291-315 18-42 (219)
187 4e22_A Cytidylate kinase; P-lo 93.6 0.041 1.4E-06 53.2 3.8 31 291-321 29-59 (252)
188 1svm_A Large T antigen; AAA+ f 93.6 0.044 1.5E-06 56.4 4.2 27 291-317 171-197 (377)
189 2ehv_A Hypothetical protein PH 93.6 0.067 2.3E-06 51.1 5.1 20 291-310 32-51 (251)
190 2gza_A Type IV secretion syste 93.6 0.033 1.1E-06 57.0 3.1 25 291-315 177-201 (361)
191 2r8r_A Sensor protein; KDPD, P 93.5 0.039 1.3E-06 52.3 3.3 27 287-313 4-30 (228)
192 1uj2_A Uridine-cytidine kinase 93.5 0.047 1.6E-06 52.7 4.0 26 290-315 23-48 (252)
193 4gp7_A Metallophosphoesterase; 93.5 0.033 1.1E-06 50.4 2.6 19 291-309 11-29 (171)
194 2wwf_A Thymidilate kinase, put 93.5 0.034 1.1E-06 51.8 2.8 25 290-314 11-35 (212)
195 3crm_A TRNA delta(2)-isopenten 93.5 0.045 1.5E-06 54.9 3.8 27 291-317 7-33 (323)
196 3c8u_A Fructokinase; YP_612366 93.4 0.034 1.2E-06 52.0 2.8 24 291-314 24-47 (208)
197 1ltq_A Polynucleotide kinase; 93.4 0.053 1.8E-06 53.7 4.3 29 291-319 4-32 (301)
198 2vhj_A Ntpase P4, P4; non- hyd 93.4 0.038 1.3E-06 55.2 3.1 22 291-312 125-146 (331)
199 2qt1_A Nicotinamide riboside k 93.3 0.048 1.6E-06 50.8 3.6 30 290-319 22-51 (207)
200 2oap_1 GSPE-2, type II secreti 93.2 0.066 2.3E-06 57.4 4.9 25 291-315 262-286 (511)
201 3ake_A Cytidylate kinase; CMP 93.1 0.053 1.8E-06 50.2 3.5 28 291-318 4-31 (208)
202 3sop_A Neuronal-specific septi 93.0 0.046 1.6E-06 53.5 3.1 25 290-314 3-27 (270)
203 2pez_A Bifunctional 3'-phospho 93.0 0.053 1.8E-06 49.1 3.3 23 291-313 7-29 (179)
204 1kao_A RAP2A; GTP-binding prot 93.0 0.057 1.9E-06 47.5 3.4 23 290-312 4-26 (167)
205 2pt7_A CAG-ALFA; ATPase, prote 93.0 0.063 2.1E-06 54.2 4.1 32 291-322 173-207 (330)
206 2jeo_A Uridine-cytidine kinase 92.9 0.047 1.6E-06 52.4 3.0 24 291-314 27-50 (245)
207 2f9l_A RAB11B, member RAS onco 92.9 0.058 2E-06 49.7 3.4 24 290-313 6-29 (199)
208 2w0m_A SSO2452; RECA, SSPF, un 92.9 0.053 1.8E-06 51.0 3.3 23 291-313 25-47 (235)
209 1z2a_A RAS-related protein RAB 92.9 0.06 2.1E-06 47.5 3.4 23 290-312 6-28 (168)
210 1m7g_A Adenylylsulfate kinase; 92.9 0.046 1.6E-06 51.2 2.7 24 291-314 27-50 (211)
211 3lxw_A GTPase IMAP family memb 92.8 0.28 9.6E-06 47.1 8.3 26 288-313 20-45 (247)
212 1ek0_A Protein (GTP-binding pr 92.8 0.063 2.2E-06 47.4 3.4 23 290-312 4-26 (170)
213 3q85_A GTP-binding protein REM 92.8 0.062 2.1E-06 47.6 3.3 22 290-311 3-24 (169)
214 1uf9_A TT1252 protein; P-loop, 92.8 0.072 2.5E-06 49.1 3.9 23 290-312 9-31 (203)
215 3asz_A Uridine kinase; cytidin 92.7 0.052 1.8E-06 50.6 2.9 24 291-314 8-31 (211)
216 1z0j_A RAB-22, RAS-related pro 92.7 0.069 2.4E-06 47.2 3.5 23 290-312 7-29 (170)
217 2grj_A Dephospho-COA kinase; T 92.6 0.067 2.3E-06 49.5 3.4 28 290-317 13-40 (192)
218 1z08_A RAS-related protein RAB 92.6 0.068 2.3E-06 47.3 3.4 23 290-312 7-29 (170)
219 2i3b_A HCR-ntpase, human cance 92.6 0.066 2.2E-06 49.4 3.3 23 291-313 3-25 (189)
220 2onk_A Molybdate/tungstate ABC 92.6 0.058 2E-06 51.8 3.0 25 291-315 26-50 (240)
221 1vht_A Dephospho-COA kinase; s 92.6 0.092 3.1E-06 49.2 4.4 25 290-315 5-29 (218)
222 3a8t_A Adenylate isopentenyltr 92.6 0.069 2.4E-06 53.8 3.6 27 291-317 42-68 (339)
223 1w36_D RECD, exodeoxyribonucle 92.6 0.14 4.7E-06 56.3 6.4 23 291-313 166-188 (608)
224 2cvh_A DNA repair and recombin 92.5 0.062 2.1E-06 50.2 3.1 32 291-322 22-54 (220)
225 2erx_A GTP-binding protein DI- 92.5 0.064 2.2E-06 47.5 3.1 22 290-311 4-25 (172)
226 1u8z_A RAS-related protein RAL 92.5 0.072 2.5E-06 46.9 3.4 23 290-312 5-27 (168)
227 2nzj_A GTP-binding protein REM 92.5 0.069 2.4E-06 47.5 3.3 22 290-311 5-26 (175)
228 1c1y_A RAS-related protein RAP 92.5 0.071 2.4E-06 47.0 3.4 23 290-312 4-26 (167)
229 1n0w_A DNA repair protein RAD5 92.5 0.06 2E-06 51.2 3.0 22 291-312 26-47 (243)
230 3clv_A RAB5 protein, putative; 92.5 0.09 3.1E-06 47.9 4.2 24 289-312 7-30 (208)
231 1wms_A RAB-9, RAB9, RAS-relate 92.5 0.075 2.6E-06 47.5 3.5 23 290-312 8-30 (177)
232 1pzn_A RAD51, DNA repair and r 92.5 0.083 2.8E-06 53.8 4.2 33 291-323 133-175 (349)
233 1ky3_A GTP-binding protein YPT 92.5 0.076 2.6E-06 47.5 3.5 24 289-312 8-31 (182)
234 3tif_A Uncharacterized ABC tra 92.5 0.051 1.8E-06 52.0 2.4 24 291-314 33-56 (235)
235 2ce2_X GTPase HRAS; signaling 92.4 0.066 2.3E-06 46.9 3.0 23 290-312 4-26 (166)
236 3lnc_A Guanylate kinase, GMP k 92.4 0.043 1.5E-06 52.1 1.8 25 291-315 29-54 (231)
237 1upt_A ARL1, ADP-ribosylation 92.4 0.09 3.1E-06 46.6 3.9 24 289-312 7-30 (171)
238 2pcj_A ABC transporter, lipopr 92.3 0.048 1.7E-06 51.8 2.1 24 291-314 32-55 (224)
239 1nrj_B SR-beta, signal recogni 92.3 0.078 2.7E-06 49.4 3.6 24 290-313 13-36 (218)
240 1r2q_A RAS-related protein RAB 92.3 0.078 2.7E-06 46.8 3.4 23 290-312 7-29 (170)
241 1r8s_A ADP-ribosylation factor 92.3 0.077 2.6E-06 46.7 3.3 22 291-312 2-23 (164)
242 2zej_A Dardarin, leucine-rich 92.3 0.061 2.1E-06 48.8 2.7 23 290-312 3-25 (184)
243 2dyk_A GTP-binding protein; GT 92.3 0.083 2.8E-06 46.3 3.5 23 291-313 3-25 (161)
244 3t1o_A Gliding protein MGLA; G 92.3 0.083 2.8E-06 48.0 3.6 26 289-314 14-39 (198)
245 1g16_A RAS-related protein SEC 92.3 0.072 2.5E-06 47.1 3.0 23 290-312 4-26 (170)
246 2wji_A Ferrous iron transport 92.3 0.076 2.6E-06 47.2 3.2 23 290-312 4-26 (165)
247 3kta_A Chromosome segregation 92.3 0.078 2.7E-06 48.1 3.3 25 291-315 28-52 (182)
248 2eyu_A Twitching motility prot 92.2 0.073 2.5E-06 51.8 3.2 32 291-322 27-62 (261)
249 2hxs_A RAB-26, RAS-related pro 92.2 0.079 2.7E-06 47.4 3.3 23 290-312 7-29 (178)
250 3bc1_A RAS-related protein RAB 92.2 0.082 2.8E-06 47.9 3.4 23 290-312 12-34 (195)
251 4b3f_X DNA-binding protein smu 92.2 0.11 3.8E-06 57.5 5.1 19 291-309 207-225 (646)
252 1oix_A RAS-related protein RAB 92.2 0.074 2.5E-06 48.7 3.1 25 290-314 30-54 (191)
253 1sgw_A Putative ABC transporte 92.2 0.061 2.1E-06 50.7 2.5 25 291-315 37-61 (214)
254 2h92_A Cytidylate kinase; ross 92.1 0.11 3.8E-06 48.6 4.3 28 291-318 5-32 (219)
255 1z0f_A RAB14, member RAS oncog 92.0 0.09 3.1E-06 46.9 3.4 23 290-312 16-38 (179)
256 2ged_A SR-beta, signal recogni 92.0 0.095 3.2E-06 47.7 3.6 24 290-313 49-72 (193)
257 2a5y_B CED-4; apoptosis; HET: 92.0 0.13 4.5E-06 55.7 5.3 44 257-311 131-174 (549)
258 1b0u_A Histidine permease; ABC 91.9 0.065 2.2E-06 52.2 2.5 25 291-315 34-58 (262)
259 3q72_A GTP-binding protein RAD 91.9 0.071 2.4E-06 47.1 2.6 21 290-310 3-23 (166)
260 2qmh_A HPR kinase/phosphorylas 91.9 0.073 2.5E-06 49.4 2.6 24 291-314 36-59 (205)
261 3vkw_A Replicase large subunit 91.9 0.024 8.3E-07 59.3 -0.7 22 291-312 163-184 (446)
262 1gtv_A TMK, thymidylate kinase 91.9 0.035 1.2E-06 51.8 0.5 24 291-314 2-25 (214)
263 4dsu_A GTPase KRAS, isoform 2B 91.9 0.094 3.2E-06 47.3 3.4 23 290-312 5-27 (189)
264 1g6h_A High-affinity branched- 91.9 0.066 2.2E-06 52.0 2.4 25 291-315 35-59 (257)
265 2oil_A CATX-8, RAS-related pro 91.8 0.096 3.3E-06 47.7 3.4 23 290-312 26-48 (193)
266 4eaq_A DTMP kinase, thymidylat 91.8 0.077 2.6E-06 50.5 2.8 25 290-314 27-51 (229)
267 1z6t_A APAF-1, apoptotic prote 91.8 0.15 5.1E-06 55.6 5.5 46 254-311 124-169 (591)
268 1rz3_A Hypothetical protein rb 91.8 0.18 6.1E-06 46.7 5.3 23 291-313 24-46 (201)
269 2efe_B Small GTP-binding prote 91.8 0.098 3.3E-06 46.9 3.4 23 290-312 13-35 (181)
270 2ff7_A Alpha-hemolysin translo 91.8 0.069 2.4E-06 51.5 2.4 25 291-315 37-61 (247)
271 3gfo_A Cobalt import ATP-bindi 91.7 0.07 2.4E-06 52.4 2.5 25 291-315 36-60 (275)
272 2pze_A Cystic fibrosis transme 91.7 0.073 2.5E-06 50.7 2.5 25 291-315 36-60 (229)
273 2g6b_A RAS-related protein RAB 91.7 0.1 3.5E-06 46.7 3.4 24 289-312 10-33 (180)
274 2qi9_C Vitamin B12 import ATP- 91.7 0.072 2.5E-06 51.5 2.5 25 291-315 28-52 (249)
275 2cbz_A Multidrug resistance-as 91.7 0.057 2E-06 51.7 1.8 24 291-314 33-56 (237)
276 3ihw_A Centg3; RAS, centaurin, 91.7 0.1 3.5E-06 47.5 3.4 24 289-312 20-43 (184)
277 2olj_A Amino acid ABC transpor 91.7 0.073 2.5E-06 51.9 2.5 25 291-315 52-76 (263)
278 3kkq_A RAS-related protein M-R 91.7 0.1 3.5E-06 46.9 3.4 23 290-312 19-41 (183)
279 1ji0_A ABC transporter; ATP bi 91.6 0.072 2.5E-06 51.1 2.4 25 291-315 34-58 (240)
280 1vma_A Cell division protein F 91.6 0.59 2E-05 46.5 9.2 23 291-313 106-128 (306)
281 1mv5_A LMRA, multidrug resista 91.6 0.074 2.5E-06 51.2 2.5 32 291-322 30-64 (243)
282 2y8e_A RAB-protein 6, GH09086P 91.6 0.091 3.1E-06 46.9 3.0 23 290-312 15-37 (179)
283 3con_A GTPase NRAS; structural 91.6 0.1 3.5E-06 47.3 3.4 23 290-312 22-44 (190)
284 3tw8_B RAS-related protein RAB 91.6 0.095 3.3E-06 46.8 3.1 22 290-311 10-31 (181)
285 2gf0_A GTP-binding protein DI- 91.6 0.1 3.5E-06 47.6 3.4 24 289-312 8-31 (199)
286 2lkc_A Translation initiation 91.6 0.11 3.6E-06 46.5 3.4 23 290-312 9-31 (178)
287 2gj8_A MNME, tRNA modification 91.6 0.088 3E-06 47.3 2.8 23 290-312 5-27 (172)
288 2fn4_A P23, RAS-related protei 91.6 0.097 3.3E-06 46.8 3.1 23 290-312 10-32 (181)
289 1mh1_A RAC1; GTP-binding, GTPa 91.6 0.11 3.6E-06 46.8 3.4 23 290-312 6-28 (186)
290 3foz_A TRNA delta(2)-isopenten 91.5 0.11 3.6E-06 51.7 3.5 26 291-316 12-37 (316)
291 2wjg_A FEOB, ferrous iron tran 91.5 0.1 3.5E-06 47.2 3.2 23 290-312 8-30 (188)
292 1q3t_A Cytidylate kinase; nucl 91.5 0.097 3.3E-06 49.9 3.2 28 291-318 18-45 (236)
293 2iwr_A Centaurin gamma 1; ANK 91.5 0.085 2.9E-06 47.3 2.6 23 290-312 8-30 (178)
294 3d3q_A TRNA delta(2)-isopenten 91.5 0.1 3.6E-06 52.6 3.5 25 291-315 9-33 (340)
295 1m7b_A RND3/RHOE small GTP-bin 91.5 0.098 3.3E-06 47.4 3.0 23 290-312 8-30 (184)
296 1vpl_A ABC transporter, ATP-bi 91.4 0.079 2.7E-06 51.4 2.5 25 291-315 43-67 (256)
297 2atv_A RERG, RAS-like estrogen 91.4 0.12 4E-06 47.4 3.6 23 290-312 29-51 (196)
298 1lw7_A Transcriptional regulat 91.4 0.12 3.9E-06 53.0 3.8 25 291-315 172-196 (365)
299 3c5c_A RAS-like protein 12; GD 91.4 0.11 3.9E-06 47.2 3.4 24 289-312 21-44 (187)
300 2xtp_A GTPase IMAP family memb 91.4 0.32 1.1E-05 46.8 6.8 23 290-312 23-45 (260)
301 2ihy_A ABC transporter, ATP-bi 91.4 0.081 2.8E-06 52.0 2.5 32 291-322 49-83 (279)
302 2a9k_A RAS-related protein RAL 91.4 0.12 4E-06 46.5 3.4 23 290-312 19-41 (187)
303 1zd9_A ADP-ribosylation factor 91.4 0.11 3.8E-06 47.2 3.3 25 288-312 21-45 (188)
304 4g1u_C Hemin import ATP-bindin 91.4 0.077 2.6E-06 51.8 2.3 24 291-314 39-62 (266)
305 2ixe_A Antigen peptide transpo 91.3 0.081 2.8E-06 51.8 2.4 25 291-315 47-71 (271)
306 2gf9_A RAS-related protein RAB 91.3 0.12 4.1E-06 47.0 3.4 23 290-312 23-45 (189)
307 3exa_A TRNA delta(2)-isopenten 91.3 0.11 3.8E-06 51.7 3.3 25 291-315 5-29 (322)
308 3reg_A RHO-like small GTPase; 91.2 0.12 4E-06 47.2 3.4 24 289-312 23-46 (194)
309 2bme_A RAB4A, RAS-related prot 91.2 0.11 3.7E-06 46.9 3.0 23 290-312 11-33 (186)
310 3zvl_A Bifunctional polynucleo 91.2 0.083 2.8E-06 55.2 2.5 25 290-314 259-283 (416)
311 2nq2_C Hypothetical ABC transp 91.2 0.085 2.9E-06 51.1 2.4 25 291-315 33-57 (253)
312 3lxx_A GTPase IMAP family memb 91.2 0.2 6.9E-06 47.6 5.1 25 289-313 29-53 (239)
313 3oes_A GTPase rhebl1; small GT 91.2 0.11 3.7E-06 47.8 3.1 26 287-312 22-47 (201)
314 3bwd_D RAC-like GTP-binding pr 91.2 0.12 4.2E-06 46.3 3.4 23 290-312 9-31 (182)
315 2bov_A RAla, RAS-related prote 91.1 0.12 4.2E-06 47.4 3.4 24 289-312 14-37 (206)
316 1svi_A GTP-binding protein YSX 91.1 0.11 3.6E-06 47.4 2.9 24 289-312 23-46 (195)
317 3tkl_A RAS-related protein RAB 91.1 0.13 4.3E-06 46.9 3.4 23 290-312 17-39 (196)
318 2yz2_A Putative ABC transporte 91.1 0.087 3E-06 51.4 2.4 25 291-315 35-59 (266)
319 1z06_A RAS-related protein RAB 91.1 0.13 4.4E-06 46.7 3.5 24 289-312 20-43 (189)
320 1vg8_A RAS-related protein RAB 91.1 0.13 4.4E-06 47.4 3.5 24 290-313 9-32 (207)
321 3t5g_A GTP-binding protein RHE 91.1 0.11 3.8E-06 46.6 2.9 22 290-311 7-28 (181)
322 1cr0_A DNA primase/helicase; R 91.1 0.1 3.4E-06 51.6 2.9 23 291-313 37-59 (296)
323 2yhs_A FTSY, cell division pro 91.0 0.46 1.6E-05 50.3 8.0 32 290-321 294-328 (503)
324 2ghi_A Transport protein; mult 91.0 0.086 2.9E-06 51.3 2.3 24 291-314 48-71 (260)
325 2dr3_A UPF0273 protein PH0284; 91.0 0.1 3.5E-06 49.6 2.8 32 291-322 25-60 (247)
326 3aez_A Pantothenate kinase; tr 91.0 0.12 4E-06 51.8 3.3 25 290-314 91-115 (312)
327 2cxx_A Probable GTP-binding pr 91.0 0.098 3.3E-06 47.3 2.5 22 291-312 3-24 (190)
328 1x3s_A RAS-related protein RAB 91.0 0.13 4.5E-06 46.7 3.4 24 289-312 15-38 (195)
329 2fg5_A RAB-22B, RAS-related pr 91.0 0.12 4.1E-06 47.2 3.1 23 290-312 24-46 (192)
330 1ksh_A ARF-like protein 2; sma 90.9 0.13 4.4E-06 46.5 3.3 22 290-311 19-40 (186)
331 1zbd_A Rabphilin-3A; G protein 90.9 0.12 4.1E-06 47.5 3.1 23 290-312 9-31 (203)
332 2a5j_A RAS-related protein RAB 90.9 0.14 4.6E-06 46.7 3.4 24 289-312 21-44 (191)
333 3pqc_A Probable GTP-binding pr 90.8 0.13 4.3E-06 46.7 3.2 25 288-312 22-46 (195)
334 2p5s_A RAS and EF-hand domain 90.8 0.14 4.7E-06 47.0 3.4 25 289-313 28-52 (199)
335 1z47_A CYSA, putative ABC-tran 90.8 0.11 3.8E-06 52.8 3.0 25 291-315 43-67 (355)
336 3dz8_A RAS-related protein RAB 90.8 0.13 4.3E-06 46.9 3.0 25 289-313 23-47 (191)
337 3fvq_A Fe(3+) IONS import ATP- 90.8 0.1 3.5E-06 53.2 2.6 25 291-315 32-56 (359)
338 1zj6_A ADP-ribosylation factor 90.7 0.13 4.6E-06 46.5 3.2 22 290-311 17-38 (187)
339 2bcg_Y Protein YP2, GTP-bindin 90.7 0.13 4.3E-06 47.5 3.0 23 290-312 9-31 (206)
340 3rlf_A Maltose/maltodextrin im 90.7 0.12 4E-06 53.1 3.0 32 291-322 31-65 (381)
341 2qm8_A GTPase/ATPase; G protei 90.7 0.11 3.9E-06 52.5 2.9 31 291-321 57-90 (337)
342 1nlf_A Regulatory protein REPA 90.6 0.11 3.7E-06 51.0 2.6 23 291-313 32-54 (279)
343 2it1_A 362AA long hypothetical 90.6 0.12 4.1E-06 52.8 3.0 25 291-315 31-55 (362)
344 1m2o_B GTP-binding protein SAR 90.6 0.13 4.3E-06 47.1 2.9 23 290-312 24-46 (190)
345 2yyz_A Sugar ABC transporter, 90.6 0.12 4.1E-06 52.7 3.0 31 291-321 31-64 (359)
346 3d31_A Sulfate/molybdate ABC t 90.6 0.11 3.8E-06 52.8 2.7 25 291-315 28-52 (348)
347 2j0v_A RAC-like GTP-binding pr 90.6 0.16 5.6E-06 46.9 3.7 24 289-312 9-32 (212)
348 2cjw_A GTP-binding protein GEM 90.6 0.15 5.2E-06 46.7 3.4 23 290-312 7-29 (192)
349 1fzq_A ADP-ribosylation factor 90.5 0.14 4.6E-06 46.4 3.0 23 290-312 17-39 (181)
350 2d2e_A SUFC protein; ABC-ATPas 90.5 0.13 4.4E-06 49.7 3.0 22 291-312 31-52 (250)
351 1rj9_A FTSY, signal recognitio 90.5 0.14 4.7E-06 51.0 3.3 33 291-323 104-139 (304)
352 2gk6_A Regulator of nonsense t 90.5 0.21 7E-06 55.1 5.0 22 291-312 197-218 (624)
353 1v43_A Sugar-binding transport 90.5 0.13 4.3E-06 52.8 3.0 31 291-321 39-72 (372)
354 1moz_A ARL1, ADP-ribosylation 90.4 0.1 3.5E-06 46.9 2.0 21 290-310 19-39 (183)
355 2zu0_C Probable ATP-dependent 90.4 0.13 4.6E-06 50.1 3.0 23 291-313 48-70 (267)
356 3cph_A RAS-related protein SEC 90.4 0.16 5.4E-06 47.0 3.4 24 289-312 20-43 (213)
357 2ew1_A RAS-related protein RAB 90.4 0.14 4.8E-06 47.4 3.0 23 290-312 27-49 (201)
358 1sq5_A Pantothenate kinase; P- 90.3 0.17 6E-06 50.3 3.9 24 291-314 82-105 (308)
359 2b6h_A ADP-ribosylation factor 90.3 0.14 4.9E-06 46.8 3.0 22 289-310 29-50 (192)
360 1g29_1 MALK, maltose transport 90.3 0.13 4.5E-06 52.7 3.0 25 291-315 31-55 (372)
361 2f6r_A COA synthase, bifunctio 90.3 0.13 4.5E-06 50.5 2.9 23 290-312 76-98 (281)
362 2fu5_C RAS-related protein RAB 90.3 0.099 3.4E-06 47.1 1.9 22 290-311 9-30 (183)
363 3b9q_A Chloroplast SRP recepto 90.3 0.15 5.1E-06 50.8 3.3 33 290-322 101-136 (302)
364 2q3h_A RAS homolog gene family 90.2 0.16 5.6E-06 46.5 3.3 23 289-311 20-42 (201)
365 1gwn_A RHO-related GTP-binding 90.2 0.15 5.1E-06 47.3 3.0 23 290-312 29-51 (205)
366 2il1_A RAB12; G-protein, GDP, 90.1 0.15 5.3E-06 46.4 3.1 23 289-311 26-48 (192)
367 1p9r_A General secretion pathw 90.1 0.14 4.6E-06 53.5 2.9 32 291-322 169-203 (418)
368 2fh5_B SR-beta, signal recogni 90.1 0.16 5.6E-06 47.0 3.3 24 290-313 8-31 (214)
369 2f7s_A C25KG, RAS-related prot 90.1 0.17 5.7E-06 47.1 3.3 23 290-312 26-48 (217)
370 2ewv_A Twitching motility prot 90.1 0.18 6.3E-06 51.7 3.9 24 291-314 138-161 (372)
371 1pui_A ENGB, probable GTP-bind 90.1 0.1 3.5E-06 48.3 1.8 23 290-312 27-49 (210)
372 2h17_A ADP-ribosylation factor 90.1 0.12 4.3E-06 46.5 2.3 24 289-312 21-44 (181)
373 2qnr_A Septin-2, protein NEDD5 90.0 0.13 4.3E-06 51.2 2.5 23 290-312 19-41 (301)
374 2o52_A RAS-related protein RAB 90.0 0.15 5.1E-06 46.9 2.9 23 289-311 25-47 (200)
375 3cbq_A GTP-binding protein REM 90.0 0.14 4.7E-06 47.1 2.6 22 289-310 23-44 (195)
376 3hr8_A Protein RECA; alpha and 90.0 0.14 4.9E-06 52.1 2.9 33 291-323 63-99 (356)
377 2pjz_A Hypothetical protein ST 89.9 0.12 4.1E-06 50.4 2.2 24 291-314 32-55 (263)
378 3e70_C DPA, signal recognition 89.8 0.17 5.8E-06 50.9 3.3 24 290-313 130-153 (328)
379 2atx_A Small GTP binding prote 89.8 0.17 5.9E-06 46.0 3.1 24 289-312 18-41 (194)
380 2f1r_A Molybdopterin-guanine d 89.8 0.12 4E-06 46.9 1.9 24 291-314 4-27 (171)
381 1oxx_K GLCV, glucose, ABC tran 89.8 0.11 3.8E-06 52.8 1.9 25 291-315 33-57 (353)
382 2fv8_A H6, RHO-related GTP-bin 89.7 0.17 5.8E-06 46.8 3.0 23 290-312 26-48 (207)
383 2gco_A H9, RHO-related GTP-bin 89.7 0.17 5.8E-06 46.6 3.0 24 289-312 25-48 (201)
384 2zts_A Putative uncharacterize 89.7 0.17 5.7E-06 48.2 3.0 20 291-310 32-51 (251)
385 1odf_A YGR205W, hypothetical 3 89.7 0.15 5.1E-06 50.4 2.7 24 291-314 33-56 (290)
386 3q3j_B RHO-related GTP-binding 89.7 0.2 6.8E-06 46.7 3.5 24 289-312 27-50 (214)
387 2hup_A RAS-related protein RAB 89.7 0.18 6E-06 46.5 3.1 23 290-312 30-52 (201)
388 4gzl_A RAS-related C3 botulinu 89.6 0.18 6.2E-06 46.6 3.1 23 290-312 31-53 (204)
389 2j1l_A RHO-related GTP-binding 89.6 0.17 5.7E-06 47.2 2.9 22 290-311 35-56 (214)
390 3llu_A RAS-related GTP-binding 89.6 0.17 5.7E-06 46.4 2.8 24 289-312 20-43 (196)
391 2axn_A 6-phosphofructo-2-kinas 89.5 0.15 5.1E-06 54.8 2.7 24 290-313 36-59 (520)
392 3cpj_B GTP-binding protein YPT 89.5 0.21 7.2E-06 46.8 3.5 24 290-313 14-37 (223)
393 3lda_A DNA repair protein RAD5 89.5 0.21 7.3E-06 51.7 3.8 20 291-310 180-199 (400)
394 1xjc_A MOBB protein homolog; s 89.4 0.18 6E-06 45.6 2.7 23 291-313 6-28 (169)
395 2bbs_A Cystic fibrosis transme 89.4 0.13 4.3E-06 51.0 1.9 24 291-314 66-89 (290)
396 2h57_A ADP-ribosylation factor 89.4 0.15 5.2E-06 46.3 2.3 24 289-312 21-44 (190)
397 3k53_A Ferrous iron transport 89.3 0.17 5.9E-06 49.2 2.9 23 290-312 4-26 (271)
398 2qag_B Septin-6, protein NEDD5 89.3 0.15 5.2E-06 53.1 2.6 23 291-313 44-66 (427)
399 1zu4_A FTSY; GTPase, signal re 89.3 0.73 2.5E-05 46.1 7.5 24 290-313 106-129 (320)
400 1g8f_A Sulfate adenylyltransfe 89.3 0.33 1.1E-05 51.8 5.2 26 290-315 396-421 (511)
401 2wjy_A Regulator of nonsense t 89.2 0.29 9.8E-06 55.4 5.0 22 291-312 373-394 (800)
402 3tqf_A HPR(Ser) kinase; transf 89.2 0.22 7.5E-06 45.0 3.2 23 290-312 17-39 (181)
403 1f6b_A SAR1; gtpases, N-termin 89.2 0.16 5.3E-06 46.8 2.3 22 290-311 26-47 (198)
404 3nh6_A ATP-binding cassette SU 89.2 0.14 4.8E-06 51.0 2.1 32 291-322 82-116 (306)
405 1xx6_A Thymidine kinase; NESG, 89.2 0.52 1.8E-05 43.3 5.9 22 291-312 10-31 (191)
406 1tq4_A IIGP1, interferon-induc 89.2 0.33 1.1E-05 50.4 5.0 24 291-314 71-94 (413)
407 1np6_A Molybdopterin-guanine d 89.1 0.23 7.8E-06 45.0 3.3 23 291-313 8-30 (174)
408 1f2t_A RAD50 ABC-ATPase; DNA d 89.1 0.21 7.3E-06 43.9 3.0 23 291-313 25-47 (149)
409 1bif_A 6-phosphofructo-2-kinas 89.1 0.22 7.5E-06 52.8 3.7 24 290-313 40-63 (469)
410 3fdi_A Uncharacterized protein 89.0 0.27 9.3E-06 45.6 3.9 28 291-318 8-35 (201)
411 3cr8_A Sulfate adenylyltranfer 89.0 0.26 9E-06 53.2 4.2 24 291-314 371-394 (552)
412 4bas_A ADP-ribosylation factor 89.0 0.21 7.3E-06 45.4 3.1 23 289-311 17-39 (199)
413 3tui_C Methionine import ATP-b 88.9 0.2 6.8E-06 51.1 3.0 25 291-315 56-80 (366)
414 2qag_C Septin-7; cell cycle, c 88.9 0.19 6.4E-06 52.4 2.9 24 290-313 32-55 (418)
415 2og2_A Putative signal recogni 88.9 0.22 7.4E-06 50.8 3.3 32 290-321 158-192 (359)
416 2x77_A ADP-ribosylation factor 88.8 0.16 5.4E-06 46.1 2.0 21 290-310 23-43 (189)
417 2g3y_A GTP-binding protein GEM 88.8 0.24 8.1E-06 46.4 3.3 22 290-311 38-59 (211)
418 3a1s_A Iron(II) transport prot 88.8 0.23 7.9E-06 48.0 3.3 23 290-312 6-28 (258)
419 2ocp_A DGK, deoxyguanosine kin 88.7 0.31 1E-05 46.4 4.1 25 291-315 4-28 (241)
420 2i1q_A DNA repair and recombin 88.7 0.25 8.7E-06 49.3 3.7 22 291-312 100-121 (322)
421 3gd7_A Fusion complex of cysti 88.6 0.15 5.1E-06 52.6 1.9 24 291-314 49-72 (390)
422 1c9k_A COBU, adenosylcobinamid 88.6 0.26 8.9E-06 44.9 3.3 21 292-312 2-22 (180)
423 2vp4_A Deoxynucleoside kinase; 88.5 0.22 7.7E-06 47.1 3.0 30 290-320 21-50 (230)
424 3io5_A Recombination and repai 88.5 0.36 1.2E-05 48.1 4.5 36 286-323 27-68 (333)
425 3b1v_A Ferrous iron uptake tra 88.5 0.25 8.5E-06 48.3 3.3 23 290-312 4-26 (272)
426 3gmt_A Adenylate kinase; ssgci 88.3 0.18 6.2E-06 47.9 2.1 26 291-316 10-35 (230)
427 1v5w_A DMC1, meiotic recombina 88.3 0.26 9.1E-06 49.8 3.5 22 291-312 124-145 (343)
428 2z43_A DNA repair and recombin 88.2 0.23 8E-06 49.8 3.0 23 291-313 109-131 (324)
429 1p5z_B DCK, deoxycytidine kina 88.2 0.14 4.6E-06 49.7 1.2 26 290-315 25-50 (263)
430 2yc2_C IFT27, small RAB-relate 88.2 0.12 4.2E-06 47.4 0.8 24 289-312 20-43 (208)
431 2hf9_A Probable hydrogenase ni 88.2 0.25 8.6E-06 46.2 3.0 23 291-313 40-62 (226)
432 2npi_A Protein CLP1; CLP1-PCF1 88.1 0.22 7.4E-06 52.6 2.8 31 291-321 140-175 (460)
433 2zr9_A Protein RECA, recombina 88.0 0.22 7.6E-06 50.5 2.8 32 291-322 63-98 (349)
434 2obl_A ESCN; ATPase, hydrolase 88.0 0.29 1E-05 49.6 3.6 26 291-316 73-98 (347)
435 3eph_A TRNA isopentenyltransfe 88.0 0.2 7E-06 51.6 2.4 27 291-317 4-30 (409)
436 4dkx_A RAS-related protein RAB 88.0 0.3 1E-05 45.8 3.5 23 290-312 14-36 (216)
437 2dpy_A FLII, flagellum-specifi 88.0 0.24 8.3E-06 51.9 3.1 25 291-315 159-183 (438)
438 2yv5_A YJEQ protein; hydrolase 88.0 0.34 1.2E-05 48.0 4.0 23 291-314 167-189 (302)
439 2wsm_A Hydrogenase expression/ 88.0 0.27 9.1E-06 45.9 3.1 23 291-313 32-54 (221)
440 2px0_A Flagellar biosynthesis 88.0 0.2 6.9E-06 49.6 2.3 23 291-313 107-129 (296)
441 4ag6_A VIRB4 ATPase, type IV s 87.9 0.29 1E-05 50.4 3.6 25 289-313 35-59 (392)
442 2qu8_A Putative nucleolar GTP- 87.9 0.27 9.3E-06 46.2 3.1 22 290-311 30-51 (228)
443 1tf7_A KAIC; homohexamer, hexa 87.9 0.25 8.5E-06 53.2 3.1 33 291-323 41-78 (525)
444 3t5d_A Septin-7; GTP-binding p 87.7 0.25 8.4E-06 48.2 2.7 22 289-310 8-29 (274)
445 1u0l_A Probable GTPase ENGC; p 87.6 0.23 7.8E-06 49.3 2.5 24 291-314 171-194 (301)
446 3i8s_A Ferrous iron transport 87.4 0.27 9.4E-06 48.0 2.9 23 290-312 4-26 (274)
447 2rcn_A Probable GTPase ENGC; Y 87.3 0.29 9.9E-06 49.8 3.0 24 291-314 217-240 (358)
448 4edh_A DTMP kinase, thymidylat 87.2 0.28 9.5E-06 46.1 2.7 24 291-314 8-31 (213)
449 2www_A Methylmalonic aciduria 87.1 0.39 1.3E-05 48.7 3.9 24 290-313 75-98 (349)
450 3r7w_A Gtpase1, GTP-binding pr 87.1 0.34 1.2E-05 48.1 3.5 23 290-312 4-26 (307)
451 3llm_A ATP-dependent RNA helic 87.0 0.48 1.6E-05 44.9 4.3 19 291-309 78-96 (235)
452 2xzl_A ATP-dependent helicase 87.0 0.44 1.5E-05 54.0 4.6 21 291-311 377-397 (802)
453 3cmu_A Protein RECA, recombina 86.9 0.39 1.3E-05 59.2 4.3 24 290-313 1428-1451(2050)
454 3iby_A Ferrous iron transport 86.8 0.3 1E-05 47.2 2.7 22 291-312 3-24 (256)
455 1nij_A Hypothetical protein YJ 86.5 1 3.5E-05 44.9 6.6 23 291-313 6-28 (318)
456 1x6v_B Bifunctional 3'-phospho 86.4 0.37 1.3E-05 52.7 3.5 28 291-318 54-84 (630)
457 1w4r_A Thymidine kinase; type 86.4 0.43 1.5E-05 44.0 3.4 23 291-313 22-45 (195)
458 1u94_A RECA protein, recombina 86.2 0.37 1.3E-05 49.1 3.1 32 291-322 65-100 (356)
459 4djt_A GTP-binding nuclear pro 86.1 0.18 6.2E-06 46.9 0.7 23 289-311 11-33 (218)
460 3bh0_A DNAB-like replicative h 86.1 0.37 1.3E-05 48.1 3.0 22 291-312 70-91 (315)
461 3gj0_A GTP-binding nuclear pro 86.1 0.21 7.3E-06 46.6 1.2 21 289-309 15-35 (221)
462 4dhe_A Probable GTP-binding pr 85.9 0.29 1E-05 45.5 2.1 23 290-312 30-52 (223)
463 3hdt_A Putative kinase; struct 85.8 0.49 1.7E-05 44.7 3.6 29 290-318 15-43 (223)
464 3v9p_A DTMP kinase, thymidylat 85.8 0.27 9.3E-06 46.6 1.8 24 291-314 27-50 (227)
465 3p32_A Probable GTPase RV1496/ 85.8 1.7 5.8E-05 44.0 7.9 24 290-313 80-103 (355)
466 1qhl_A Protein (cell division 85.6 0.2 7E-06 47.5 0.8 23 292-314 30-52 (227)
467 3th5_A RAS-related C3 botulinu 85.8 0.16 5.4E-06 46.8 0.0 22 290-311 31-52 (204)
468 3euj_A Chromosome partition pr 85.5 0.39 1.4E-05 50.8 3.0 24 291-314 31-54 (483)
469 3qks_A DNA double-strand break 85.5 0.39 1.3E-05 44.5 2.7 24 291-314 25-48 (203)
470 1h65_A Chloroplast outer envel 85.4 0.42 1.4E-05 46.4 3.0 23 290-312 40-62 (270)
471 3lv8_A DTMP kinase, thymidylat 85.3 0.35 1.2E-05 46.2 2.3 23 291-313 29-51 (236)
472 1ega_A Protein (GTP-binding pr 85.3 0.43 1.5E-05 47.3 3.1 22 291-312 10-31 (301)
473 3tmk_A Thymidylate kinase; pho 85.2 0.38 1.3E-05 45.2 2.5 25 291-315 7-31 (216)
474 1yqt_A RNAse L inhibitor; ATP- 85.1 0.41 1.4E-05 51.6 3.0 24 291-314 49-72 (538)
475 2qag_A Septin-2, protein NEDD5 85.1 0.38 1.3E-05 49.0 2.6 22 290-311 38-59 (361)
476 3kl4_A SRP54, signal recogniti 85.0 0.36 1.2E-05 50.4 2.4 24 290-313 98-121 (433)
477 3sfz_A APAF-1, apoptotic pepti 85.0 0.67 2.3E-05 54.9 5.1 47 254-312 124-170 (1249)
478 3cmw_A Protein RECA, recombina 84.9 0.59 2E-05 56.8 4.4 33 291-323 1084-1120(1706)
479 1mky_A Probable GTP-binding pr 84.8 0.51 1.7E-05 49.5 3.5 25 289-313 180-204 (439)
480 2p67_A LAO/AO transport system 84.3 0.42 1.4E-05 48.3 2.5 23 291-313 58-80 (341)
481 1tf7_A KAIC; homohexamer, hexa 84.2 0.47 1.6E-05 51.0 2.9 23 291-313 283-305 (525)
482 3ld9_A DTMP kinase, thymidylat 84.2 0.48 1.6E-05 44.8 2.7 25 290-314 22-46 (223)
483 1a7j_A Phosphoribulokinase; tr 84.1 0.24 8.1E-06 48.9 0.5 24 291-314 7-30 (290)
484 3def_A T7I23.11 protein; chlor 84.0 0.51 1.8E-05 45.5 2.9 23 290-312 37-59 (262)
485 2j9r_A Thymidine kinase; TK1, 83.9 1.3 4.4E-05 41.4 5.5 25 287-312 27-51 (214)
486 4tmk_A Protein (thymidylate ki 83.9 0.45 1.5E-05 44.6 2.3 23 291-313 5-27 (213)
487 1t9h_A YLOQ, probable GTPase E 83.6 0.27 9.1E-06 49.0 0.7 23 291-313 175-197 (307)
488 2r6a_A DNAB helicase, replicat 83.5 0.56 1.9E-05 49.4 3.1 23 291-313 205-227 (454)
489 1ni3_A YCHF GTPase, YCHF GTP-b 83.5 0.62 2.1E-05 47.9 3.4 23 290-312 21-43 (392)
490 2gmg_A Hypothetical protein PF 83.3 0.43 1.5E-05 38.8 1.6 33 65-104 62-94 (105)
491 2fz4_A DNA repair protein RAD2 83.3 1.8 6.3E-05 40.9 6.5 27 291-317 110-136 (237)
492 1m8p_A Sulfate adenylyltransfe 83.2 0.5 1.7E-05 51.3 2.7 25 290-314 397-421 (573)
493 3qf7_A RAD50; ABC-ATPase, ATPa 83.2 0.58 2E-05 47.7 3.0 23 291-313 25-47 (365)
494 1xp8_A RECA protein, recombina 83.1 0.54 1.9E-05 48.0 2.8 32 291-322 76-111 (366)
495 1wf3_A GTP-binding protein; GT 83.1 0.65 2.2E-05 46.0 3.3 22 291-312 9-30 (301)
496 3ice_A Transcription terminati 83.1 0.82 2.8E-05 46.8 4.0 23 291-313 176-198 (422)
497 2v3c_C SRP54, signal recogniti 83.1 0.39 1.3E-05 50.3 1.7 24 290-313 100-123 (432)
498 1vt4_I APAF-1 related killer D 82.8 1.1 3.9E-05 51.7 5.4 44 255-311 129-172 (1221)
499 3dm5_A SRP54, signal recogniti 82.8 0.56 1.9E-05 49.0 2.7 24 290-313 101-124 (443)
500 2dby_A GTP-binding protein; GD 82.7 0.67 2.3E-05 47.3 3.2 22 291-312 3-24 (368)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.5e-82 Score=696.69 Aligned_cols=506 Identities=38% Similarity=0.627 Sum_probs=447.0
Q ss_pred CcHHHHHHHHHHHhccc------cC-CCCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEe
Q 040742 1 KPRMTLSCMTAAVHKNK------LE-DGMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFEC 73 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~------~~-~~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C 73 (581)
+|.+++++|+.|++++. +. ...+++|||+|+|.. ..+|+|++.++||||+|+|+|+|+|.|+|++..++|.|
T Consensus 60 ~p~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C 138 (595)
T 3f9v_A 60 NTKIILPILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRV-IELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKH 138 (595)
T ss_dssp THHHHHHHHHHHHHHHHHHHCGGGTTTCCCCCCCEECCSCE-ECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEE
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhccceEEEEEeCCCCC-CChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEe
Confidence 69999999999999753 11 234799999999976 88999999999999999999999999999999999999
Q ss_pred CC--CCcEEEEe---eCCCeecCCccccCCCCCCC-CeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccC
Q 040742 74 SK--CKSEILRI---FPEGKFSPPLVCTLHGCKSK-TFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSED 147 (581)
Q Consensus 74 ~~--C~~~~~~~---~~~~~~~~p~~C~~~~C~~~-~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~d 147 (581)
.+ |++.+... ...+.+.+|..|+ .|+++ +|.++.+.|.|+|||+|+|||. ++.+|.|++|++++|+|++|
T Consensus 139 ~~~~C~~~~~~~~~~~~~~~~~~p~~C~--~C~~~~~~~~~~~~s~~~d~Q~i~iQe~--~~~~~~g~~pr~~~v~l~~d 214 (595)
T 3f9v_A 139 IHPDCMQEFEWPEDEEMPEVLEMPTICP--KCGKPGQFRLIPEKTKLIDWQKAVIQER--PEEVPSGQLPRQLEIILEDD 214 (595)
T ss_dssp ESSSCCCBCCSSCSSCCCSSCCCCSSCT--TTCCCSEEECCSTTCEEEEEEEEEEECC--TTTSCTTSCCCEEEEEEEGG
T ss_pred cCCCCCCEEEEEeccccCCcccCCCcCC--CCCCCCceEEeccCceeeeeEEEEEEec--cccCCCCCCCceEEEEEecc
Confidence 99 99988765 3456899999997 58885 8999999999999999999995 66789999999999999999
Q ss_pred ccccccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEEEecCCCCCccccccCccccccccccccCCCCH
Q 040742 148 LVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQANLFSFSP 227 (581)
Q Consensus 148 lv~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (581)
|||+|+|||+|.|+||++..+.. ++ ++...+.|++||+|++|+..... .....+++
T Consensus 215 lv~~~~pGd~v~v~Gi~~~~~~~-----~~-~~~~~~~~~~~i~a~~i~~~~~~------------------~~~~~~t~ 270 (595)
T 3f9v_A 215 LVDSARPGDRVKVTGILDIKQDS-----PV-KRGSRAVFDIYMKVSSIEVSQKV------------------LDEVIISE 270 (595)
T ss_dssp GTTCSCSSCEEEEEEECCCCCSS-----TT-SCTTCCCCCCCCEEEEEEECCCC------------------CCCCCCTT
T ss_pred cccccccCCEEEEEEEEEecccc-----cc-cCCCcceEEEEEEEEeecccccc------------------cccCCCCH
Confidence 99999999999999999987631 11 12235789999999999765321 22346888
Q ss_pred HHHHHHHHHHhhcCchHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHH
Q 040742 228 RDLEFIVKFSEESGSDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQ 307 (581)
Q Consensus 228 ~~~~~i~~~~~~~~~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~ 307 (581)
++++.+.+++. .+++|+.|.++++|.|+|++.+|+++++++++|..+...+ ...|+++|+||+||||||||+||+
T Consensus 271 ~~~~~i~~~~~--~~~~~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~---~~~r~~~~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 271 EDEKKIKDLAK--DPWIRDRIISSIAPSIYGHWELKEALALALFGGVPKVLED---TRIRGDIHILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp STHHHHHTTSS--TTTGGGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTT---TEECCSCCEEEEESSCCTHHHHHH
T ss_pred HHHHHHHHHhh--CcHHHHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccC---CCcCCCcceEEECCCchHHHHHHH
Confidence 99999988876 4789999999999999999999999999999997665544 458899999999999999999999
Q ss_pred HHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeC
Q 040742 308 AAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKA 386 (581)
Q Consensus 308 ~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~ 386 (581)
++++.+++..+..+...+..++++....+..+|.+...+|.+.+|++|+||||||++++++.+ +|+++||++.+++.++
T Consensus 346 ~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~ 425 (595)
T 3f9v_A 346 FISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKA 425 (595)
T ss_dssp SSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESS
T ss_pred HHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecC
Confidence 999999998887777678889999888877788899999999999999999999999999888 9999999999999999
Q ss_pred CeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCccccc
Q 040742 387 GLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAK 466 (581)
Q Consensus 387 g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 466 (581)
|....++.+++||||+||..|+|+...++.+|+.++++|+||||+++++.+.|+++ +..|++|++..|....
T Consensus 426 g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~------- 497 (595)
T 3f9v_A 426 GIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKS------- 497 (595)
T ss_dssp SSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCS-------
T ss_pred CcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccc-------
Confidence 99999999999999999999999988888999999999999999999999999999 9999999998775411
Q ss_pred CcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCC
Q 040742 467 KPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSA 546 (581)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~ 546 (581)
....++.+++++|+.||+..++|.|++++.+.|.++|.++|+.....
T Consensus 498 ---------------------------------~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~ 544 (595)
T 3f9v_A 498 ---------------------------------TKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSET 544 (595)
T ss_dssp ---------------------------------SSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBC
T ss_pred ---------------------------------cccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 12356677799999999999999999999999999999999876533
Q ss_pred C--CccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 547 D--STPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 547 ~--~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
. ..++|+|+|++++|+|+|+|++++++.|+++||+
T Consensus 545 ~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~ 581 (595)
T 3f9v_A 545 PDSPILITPRQLEALIRISEAYAKMALKAEVTREDAE 581 (595)
T ss_dssp SSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHH
T ss_pred CCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHH
Confidence 2 6799999999999999999999999999999973
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=4.8e-66 Score=537.82 Aligned_cols=374 Identities=29% Similarity=0.427 Sum_probs=314.0
Q ss_pred CCccccCCCCCCCCeEE-eccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCccc------cccCCCEEEEEEE
Q 040742 91 PPLVCTLHGCKSKTFTP-IRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVD------ACIPGDVVTVTGI 163 (581)
Q Consensus 91 ~p~~C~~~~C~~~~f~~-~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~------~~~pGd~V~v~GI 163 (581)
.|-.|+...-++..+.. --+.+.|.|||+|+|||. ++.++.|++|++++|+|++|||| +|+|||+|.|+||
T Consensus 89 ~~~~~~~~~~~g~~~~~~r~~k~~~~d~Q~IkiQE~--pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pGd~V~v~GI 166 (506)
T 3f8t_A 89 APDVEPRVRFRGLPHRFRRVERIRPMDGALISIEGV--VREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGI 166 (506)
T ss_dssp CTTSCCCEEEECCCGGGSSCSCCGGGTTCEEEEEEE--EEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEE
T ss_pred CCCCCcccccCCcccccchHhhccccccEEEEEecC--cccCCCCCCCceEEEEecccccCcccccccccCCCEEEEEEE
Confidence 35567643222222111 123467899999999995 56789999999999999999999 9999999999999
Q ss_pred EEEeecccccCCCccccccccceEEEEEEEEEEecCCCCCccccccCccccccccccccCCCCHHHHHHHHHHHhhcCch
Q 040742 164 IRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQANLFSFSPRDLEFIVKFSEESGSD 243 (581)
Q Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 243 (581)
++. . ||+|++|+..+. .....|+++|.+.|.++++ . +
T Consensus 167 ~~~----------------~-----~l~a~~i~~~~~-------------------~~~~~~t~ed~~~i~~l~~--~-~ 203 (506)
T 3f8t_A 167 VRS----------------A-----TLDALEVHKKDP-------------------IPEVHPDPAELEEFRELAD--K-D 203 (506)
T ss_dssp EET----------------T-----EEEEEEEEEECS-------------------SCCCCCCHHHHHHHHHHHH--S-C
T ss_pred EEE----------------e-----EEEEEEEEEcCc-------------------cccCCCCHHHHHHHHHHHH--H-H
Confidence 973 1 899999976221 2235789999999999987 3 8
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHH-HHHCCCcEEEecC
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAA-AAVSPRGIYVCGN 322 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~l-a~~~~~~~~~~~~ 322 (581)
+|+.|.++++| |+|++.+|++++++|+||+.+ .||++|+||+|+||| ||+||+++ ++++|+.+|+.|.
T Consensus 204 ~~~~l~~sIap-I~G~e~vK~aLll~L~GG~~k---------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~ 272 (506)
T 3f8t_A 204 PLTTFARAIAP-LPGAEEVGKMLALQLFSCVGK---------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLR 272 (506)
T ss_dssp HHHHHHHHHCC-STTCHHHHHHHHHHHTTCCSS---------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGG
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHcCCccc---------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCC
Confidence 99999999999 999999999999999999743 789999999999999 99999999 9999999999888
Q ss_pred CCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEe
Q 040742 323 ATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAA 401 (581)
Q Consensus 323 ~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa 401 (581)
..+..+++++ .+++ +| |.+++|++++|++|+||+|||++++++.+ +|+++||+|.+++. |. .+|++|+||||
T Consensus 273 ~ss~~gLt~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA 345 (506)
T 3f8t_A 273 RTELTDLTAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAA 345 (506)
T ss_dssp GCCHHHHSEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEE
T ss_pred CCCccCceEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEE
Confidence 7777789888 7777 77 99999999999999999999999999988 99999999999997 66 99999999999
Q ss_pred eCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCcccccc
Q 040742 402 ANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLS 481 (581)
Q Consensus 402 ~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (581)
+||.+ +|++..++ +|+.|+++++||||+++++.|+|+.+.|..-
T Consensus 346 ~NP~~-~yd~~~s~-~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~---------------------------------- 389 (506)
T 3f8t_A 346 INPGE-QWPSDPPI-ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQ---------------------------------- 389 (506)
T ss_dssp ECCCC---CCSCGG-GGCCSCHHHHTTCSEEEETTC--------------------------------------------
T ss_pred eCccc-ccCCCCCc-cccCCChHHhhheeeEEEecCCCChhHhhcc----------------------------------
Confidence 99987 88877777 8999999999999999999999998876310
Q ss_pred ccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCcCCHHHHHHHHHHHHHHhhcCC-----CCCCccccHHH
Q 040742 482 VKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYAR-TFVFPRMTKPAAEILQKFYLKLRDHNT-----SADSTPITARQ 555 (581)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar-~~i~p~ls~~a~~~i~~~y~~lR~~~~-----~~~~~~~t~R~ 555 (581)
....++.++|++|+.||| .+++|.+++++.++|.++|.++|+... .....++|+|+
T Consensus 390 ------------------~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~ 451 (506)
T 3f8t_A 390 ------------------DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQ 451 (506)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHH
T ss_pred ------------------cCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHH
Confidence 013578899999999999 788999999999999999999997421 11467899999
Q ss_pred HHHHHHHHHHHHhccCCCCCCccccC
Q 040742 556 LESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 556 leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
+++|+|+|+|+|+|++|+.|+++||+
T Consensus 452 leaLiRlA~A~A~L~gR~~V~~eDV~ 477 (506)
T 3f8t_A 452 LESVERLAKAHARMRLSDDVEPEDVD 477 (506)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCCHHHHH
Confidence 99999999999999999999999973
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=2.1e-40 Score=331.82 Aligned_cols=214 Identities=26% Similarity=0.485 Sum_probs=164.1
Q ss_pred CcHHHHHHHHHHHhccc-cCCCCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEeCCCCcE
Q 040742 1 KPRMTLSCMTAAVHKNK-LEDGMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFECSKCKSE 79 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~-~~~~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C~~C~~~ 79 (581)
+|.++|++|+.|++++. +....+++|||+|+|.. ..+|+|++.++||||+|+|+|+|+|.|+|++..++|.|.+||+.
T Consensus 65 ~P~~~l~~~~~a~~~~~~~~~~~~~~vr~~~~~~~-~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~ 143 (279)
T 1ltl_A 65 KPDDVIRAAQQAIRNIDRLRKNVDLNIRFSGISNV-IPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRH 143 (279)
T ss_dssp SHHHHHHHHHHHHTTTCTTCCCCCCEEEEECCSCB-CCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCE
T ss_pred CHHHHHHHHHHHHHHhccccCCeeEEEEEECCCCC-CCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCE
Confidence 69999999999999874 21112799999999986 89999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCeecCCccccCCCCCCCCeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccCccccccCCCEEE
Q 040742 80 ILRIFPEGKFSPPLVCTLHGCKSKTFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSEDLVDACIPGDVVT 159 (581)
Q Consensus 80 ~~~~~~~~~~~~p~~C~~~~C~~~~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~dlv~~~~pGd~V~ 159 (581)
++..+..+.+.+|..|+ .|+++.|.++.+.|.|+|||+|+|||. ++.+|.|++||+++|+|++||||+|+|||+|+
T Consensus 144 ~~v~~~~~~~~~P~~Cp--~C~~~~f~l~~~~s~f~D~Q~ikiQE~--pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~ 219 (279)
T 1ltl_A 144 HAVTQSTNMITEPSLCS--ECGGRSFRLLQDESEFLDTQTLKLQEP--LENLSGGEQPRQITVVLEDDLVDTLTPGDIVR 219 (279)
T ss_dssp EEEECSSSSCCCCSCCT--TTCCCCEEECGGGCEEEEEEEEEEECC--STTCCSSCCCCEEEEEEEGGGTTCCCTTCEEE
T ss_pred EEEEecCCcccCCCcCC--CCCCCCcEEeccccEEEeeEEEEEecC--cccCCCCCCCeEEEEEEcccccCccCCCCEEE
Confidence 98888778899999997 498888999999999999999999995 67899999999999999999999999999999
Q ss_pred EEEEEEEeecccccCCCccccccccceEEEEEEEEEEecCCCCCccccccCccccccccccccCCCCHHHHHHHHHHHhh
Q 040742 160 VTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNSKSQSDTEDLQGSNCNARASEQANLFSFSPRDLEFIVKFSEE 239 (581)
Q Consensus 160 v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 239 (581)
||||++..++ ...+.|++||+|++|+..+.. .....||++|.+.|.++++
T Consensus 220 vtGI~~~~~~-----------~~~~~~~~~l~a~~I~~~~~~------------------~~~~~~t~ed~~~i~~ls~- 269 (279)
T 1ltl_A 220 VTGTLRTVRD-----------ERTKRFKNFIYGNYTEFLEQE------------------FEELQISEEDEEKIKELAG- 269 (279)
T ss_dssp EEEEEEEEEE-----------TTTTEEEEEEEEEECCBC-----------------------------------------
T ss_pred EEEEEEEeeC-----------CCCceEEEEEEEEEEEEecCc------------------cccCCCCHHHHHHHHHHhc-
Confidence 9999998751 124789999999999754321 1235789999999999987
Q ss_pred cCchHHHHHHH
Q 040742 240 SGSDIFRQIVQ 250 (581)
Q Consensus 240 ~~~~~~~~l~~ 250 (581)
.+|+|+.|++
T Consensus 270 -~~~iy~~L~~ 279 (279)
T 1ltl_A 270 -DPNIYEKIIR 279 (279)
T ss_dssp -----------
T ss_pred -CCCHHHHhhC
Confidence 4899988763
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.2e-37 Score=305.52 Aligned_cols=187 Identities=27% Similarity=0.480 Sum_probs=165.1
Q ss_pred CcHHHHHHHHHHHhcccc-------CCCCeEEEeccCCCccccccCCCCcccCCcEEEEEEEEEeeccceeEEEEEEEEe
Q 040742 1 KPRMTLSCMTAAVHKNKL-------EDGMKINIRPYNYPESMIALKNLKAAYIDKLVSVRGTVVKAGTVRPLVVRMDFEC 73 (581)
Q Consensus 1 ~P~~~l~~~~~a~~~~~~-------~~~~~i~vr~~n~p~~~~~~~~l~s~~igklV~i~G~V~~~s~v~p~~~~~~~~C 73 (581)
+|.++|++|+.|++++.. ....+++|||+|+|.. ..+|+|++.++||||+|+|+|+|+|.|+|++..++|.|
T Consensus 66 ~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~vr~~~~~~~-~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C 144 (268)
T 2vl6_A 66 NTKIILPILEGALYDHILQLDPTYQRDIEKVHVRIVGIPRV-IELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKH 144 (268)
T ss_dssp HTTTTHHHHHHHHHHHHHTTCGGGTTTCSCCCEEEECCSCE-ECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCchhhccCccEEEEEECCCCC-CccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEEC
Confidence 589999999999987532 1345799999999976 89999999999999999999999999999999999999
Q ss_pred --CCCCcEEEEe---eCCCeecCCccccCCCCCCC-CeEEeccccceeeeeEEEeeccccCCCCCCCCCceEEEEEeccC
Q 040742 74 --SKCKSEILRI---FPEGKFSPPLVCTLHGCKSK-TFTPIRASARKIDFQKIRLQELLKSQDHEEGRVPRTVECELSED 147 (581)
Q Consensus 74 --~~C~~~~~~~---~~~~~~~~p~~C~~~~C~~~-~f~~~~~~s~~~d~Q~I~lQe~~~~~~~~~g~~p~~i~v~l~~d 147 (581)
.+||+.+... ...+.+.+|..|+ .|+++ +|.++.+.|.|+|||+|+|||. ++.+|.|++||+++|+|++|
T Consensus 145 ~~~~C~~~~~~~~~~~~~~~~~~P~~Cp--~C~~~~~~~l~~~~s~f~D~Q~ikiQE~--pe~vp~G~~Prsi~v~l~~d 220 (268)
T 2vl6_A 145 IHPDCMQEFEWPEDEEMPEVLEMPTICP--KCGKPGQFRLIPEKTKLIDWQKAVIQER--PEEVPSGQLPRQLEIILEDD 220 (268)
T ss_dssp ECTTCCCEEESSTTSCCCTTCCCCSBCT--TTCCBCEEEECGGGCEEEEEEEEEEECC--GGGSCTTSCCCEEEEEEEGG
T ss_pred CCCCCCCEEeeeecccCCCcccCCccCC--CCCCCCCEEEecCccEEEeeEEEEEEeC--CCCCCCCCCCcEEEEEEccC
Confidence 9999998877 5677899999997 69887 5999999999999999999995 56799999999999999999
Q ss_pred ccccccCCCEEEEEEEEEEeecccccCCCccccccccceEEEEEEEEEEec
Q 040742 148 LVDACIPGDVVTVTGIIRVINNYMDIGGGKSKSKSQGFYYLFLEAVSVKNS 198 (581)
Q Consensus 148 lv~~~~pGd~V~v~GIl~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~i~~~ 198 (581)
|||+|+|||+|+||||++..+.. +. +....+.|++||+|+||+..
T Consensus 221 Lvd~~~PGDrV~vtGI~~~~~~~-----~~-~~~~~~~~~~yl~an~I~~~ 265 (268)
T 2vl6_A 221 LVDSARPGDRVKVTGILDIKQDS-----PV-KRGSRAVFDIYMKVSSIEVS 265 (268)
T ss_dssp GTTSSCTTCEEEEEEEEEEECSS-----TT-CCSSCCEEEEEEEEEEEEEC
T ss_pred ccCcccCCCEEEEEEEEEEeecc-----cc-cCCCceEEEEEEEEEEEEEe
Confidence 99999999999999999998731 11 12346899999999999754
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.94 E-value=4.1e-25 Score=227.90 Aligned_cols=263 Identities=18% Similarity=0.251 Sum_probs=200.6
Q ss_pred hHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-Eec
Q 040742 243 DIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCG 321 (581)
Q Consensus 243 ~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~ 321 (581)
+.++.+...+.+.|+|++.++++++.++.++. |+||+||||||||++|+++++.++..++ +..
T Consensus 16 ~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~----------------~vll~G~pGtGKT~la~~la~~~~~~~~~i~~ 79 (331)
T 2r44_A 16 NKIKEVIDEVGKVVVGQKYMINRLLIGICTGG----------------HILLEGVPGLAKTLSVNTLAKTMDLDFHRIQF 79 (331)
T ss_dssp HHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC----------------CEEEESCCCHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHhccceeCcHHHHHHHHHHHHcCC----------------eEEEECCCCCcHHHHHHHHHHHhCCCeEEEec
Confidence 46788999999999999999999999988763 8999999999999999999999987665 443
Q ss_pred -CCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEE
Q 040742 322 -NATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVL 399 (581)
Q Consensus 322 -~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~vi 399 (581)
......++.+....+...+.+.+.+|.+. ++++||||+++++++.+ .|+++|+++.+++. |.....+.++.++
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~---~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~--g~~~~~~~~~~vi 154 (331)
T 2r44_A 80 TPDLLPSDLIGTMIYNQHKGNFEVKKGPVF---SNFILADEVNRSPAKVQSALLECMQEKQVTIG--DTTYPLDNPFLVL 154 (331)
T ss_dssp CTTCCHHHHHEEEEEETTTTEEEEEECTTC---SSEEEEETGGGSCHHHHHHHHHHHHHSEEEET--TEEEECCSSCEEE
T ss_pred CCCCChhhcCCceeecCCCCceEeccCccc---ccEEEEEccccCCHHHHHHHHHHHhcCceeeC--CEEEECCCCEEEE
Confidence 22233445555554444566666666653 68999999999999888 99999999998885 8888899999999
Q ss_pred EeeCCCC--CCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCcc
Q 040742 400 AAANPVG--GHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEG 477 (581)
Q Consensus 400 aa~Np~~--g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (581)
||+||.. |.+. ++++|+|||++.+. .+.|+.+....|..+........
T Consensus 155 at~np~~~~~~~~----------l~~~l~~Rf~~~i~-i~~p~~~~~~~il~~~~~~~~~~------------------- 204 (331)
T 2r44_A 155 ATQNPVEQEGTYP----------LPEAQVDRFMMKIH-LTYLDKESELEVMRRVSNMNFNY------------------- 204 (331)
T ss_dssp EEECTTCCSCCCC----------CCHHHHTTSSEEEE-CCCCCHHHHHHHHHHHHCTTCCC-------------------
T ss_pred EecCCCcccCccc----------CCHHHHhheeEEEE-cCCCCHHHHHHHHHhccccCcch-------------------
Confidence 9999874 4443 89999999987554 46677777777655544321100
Q ss_pred ccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCC-------CCcc
Q 040742 478 LDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSA-------DSTP 550 (581)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~-------~~~~ 550 (581)
.....++.+.+......++. ..+++++.+++.+++..+|...... ...+
T Consensus 205 ---------------------~~~~~~~~~~i~~~~~~~~~---v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~ 260 (331)
T 2r44_A 205 ---------------------QVQKIVSKNDVLEIRNEINK---VTISESLEKYIIELVFATRFPAEYGLEAEASYILYG 260 (331)
T ss_dssp ---------------------CCCCCSCHHHHHHHHHHHHT---CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEEC
T ss_pred ---------------------hccccCCHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHhccccccccccccccccC
Confidence 01123555556666555543 3689999999999998888653100 1235
Q ss_pred ccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 551 ITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 551 ~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
+|+|.+..++++|+|+|.+++++.|+++|+
T Consensus 261 ~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv 290 (331)
T 2r44_A 261 ASTRAAINLNRVAKAMAFFNNRDYVLPEDI 290 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSBCCHHHH
T ss_pred cChhHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 799999999999999999999999999997
No 6
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.93 E-value=2.3e-24 Score=231.96 Aligned_cols=262 Identities=16% Similarity=0.214 Sum_probs=183.0
Q ss_pred hHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc---EEE
Q 040742 243 DIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG---IYV 319 (581)
Q Consensus 243 ~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~---~~~ 319 (581)
+.++.+.+++.+.|+|++.+++.++.++.++. |+||+||||||||+||+++++.++.. .+.
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~----------------~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~ 74 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSGE----------------SVFLLGPPGIAKSLIARRLKFAFQNARAFEYL 74 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC----------------EEEEECCSSSSHHHHHHHGGGGBSSCCEEEEE
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC----------------eeEeecCchHHHHHHHHHHHHHHhhhhHHHHH
Confidence 45778999999999999999999999998874 99999999999999999999988542 122
Q ss_pred ecCCCccCCceeEEEecC--ccccce-eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 320 CGNATTKAGLTVAVVKDS--VTNDYA-FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~--~~~~~~-~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
.....+..++++...... ..|.+. ...|.+ +..+|+|||||++++++.+ .|+++|+++.+++. |.....+.+
T Consensus 75 ~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l--~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~--G~~~~~~~~ 150 (500)
T 3nbx_X 75 MTRFSTPEEVFGPLSIQALKDEGRYERLTSGYL--PEAEIVFLDEIWKAGPAILNTLLTAINERQFRNG--AHVEKIPMR 150 (500)
T ss_dssp CCTTCCHHHHHCCBC----------CBCCTTSG--GGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECS--SSEEECCCC
T ss_pred HHhcCCHHHhcCcccHHHHhhchhHHhhhccCC--CcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCC--CCcCCcchh
Confidence 222222233332111100 012221 223332 2367999999999999988 99999999999884 788888888
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCH-HHHHHHHHHHHhhccCCCCCcccccCcccccCC
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDE-LLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHN 474 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~-~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 474 (581)
+ +++|+|+.... ..+.+++++||++. +..++|++ +....| +..+.......
T Consensus 151 ~-iI~ATN~lpe~----------~~~~~aLldRF~~~-i~v~~p~~~ee~~~I----L~~~~~~~~~~------------ 202 (500)
T 3nbx_X 151 L-LVAASNELPEA----------DSSLEALYDRMLIR-LWLDKVQDKANFRSM----LTSQQDENDNP------------ 202 (500)
T ss_dssp E-EEEEESSCCCT----------TCTTHHHHTTCCEE-EECCSCCCHHHHHHH----HTCCCCTTSCC------------
T ss_pred h-hhhccccCCCc----------cccHHHHHHHHHHH-HHHHHhhhhhhHHHH----HhcccccCCCC------------
Confidence 7 56666764211 11568999999554 44566665 444444 33221110000
Q ss_pred CccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHH
Q 040742 475 TEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITAR 554 (581)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R 554 (581)
......++.+.+..+..+++.. .+++++.+++.+.+..+|.... ..++|.|
T Consensus 203 -----------------------~~~~~~~~~e~l~~~~~~~~~v---~v~d~v~e~i~~l~~~lr~~r~---~~~iS~R 253 (500)
T 3nbx_X 203 -----------------------VPDALQVTDEEYERWQKEIGEI---TLPDHVFELIFMLRQQLDKLPD---APYVSDR 253 (500)
T ss_dssp -----------------------SCTTTSBCHHHHHHHHHHHTTC---BCCHHHHHHHHHHHHHHHHCSS---SCCCCHH
T ss_pred -----------------------CCccceecHHHHHHHHhcCCcc---cCchHHHHHHHHHHHHhhcCCC---CCccchh
Confidence 0012357788888888777653 6899999999998877665442 3467999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 555 QLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 555 ~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
.+++++++|+|+|.+++++.|+++||.
T Consensus 254 ~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 254 RWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHHHHhhcCCccccchHHH
Confidence 999999999999999999999999984
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.90 E-value=9.3e-23 Score=211.50 Aligned_cols=255 Identities=24% Similarity=0.226 Sum_probs=182.3
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCc--------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATT-------- 325 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~-------- 325 (581)
.+++|++.+++++..++..+.. .|+||+||||||||++|+++++.+++..+..+....
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~--------------~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 89 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGI--------------GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIP 89 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGG--------------CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC
T ss_pred hhccChHHHHHHHHHHhhCCCC--------------ceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccccc
Confidence 4589999999887777665421 289999999999999999999998764332221100
Q ss_pred -------------------------cCCceeEEEecC--ccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHH
Q 040742 326 -------------------------KAGLTVAVVKDS--VTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAME 377 (581)
Q Consensus 326 -------------------------~~~l~~~~~~~~--~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me 377 (581)
..++.+...... ..+.+...+|.+..+++|++||||+++++.+.+ .|+.+|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le 169 (350)
T 1g8p_A 90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQ 169 (350)
T ss_dssp TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHH
T ss_pred chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHh
Confidence 001111100000 012244566777778899999999999999888 9999999
Q ss_pred ccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccC
Q 040742 378 QQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSG 457 (581)
Q Consensus 378 ~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~ 457 (581)
++...+...|.....+.++.+|+|+||..+. ++++|++||++.+.++..++.+.+..|..+.+.....
T Consensus 170 ~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~------------l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~ 237 (350)
T 1g8p_A 170 SGENVVERDGLSIRHPARFVLVGSGNPEEGD------------LRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD 237 (350)
T ss_dssp HSEEEECCTTCCEEEECCEEEEEEECSCSCC------------CCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHC
T ss_pred cCceEEEecceEEeeCCceEEEEEeCCCCCC------------CCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccC
Confidence 9988888888888889999999999985432 8899999999877777766777777777665543110
Q ss_pred CCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCC-CcCCHHHHHHHHHHH
Q 040742 458 YQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVF-PRMTKPAAEILQKFY 536 (581)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~-p~ls~~a~~~i~~~y 536 (581)
. . .+.. ........+++++.+++.... ..+++++.++|.+++
T Consensus 238 ~---~-----------------------~~~~-----------~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~ 280 (350)
T 1g8p_A 238 P---K-----------------------AFLE-----------EWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC 280 (350)
T ss_dssp H---H-----------------------HHHH-----------HHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH
T ss_pred c---h-----------------------hhcc-----------ccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 0 0 0000 001123457778877665432 269999999999988
Q ss_pred HHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 537 LKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 537 ~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
...+ .-++|.+..+++.|.++|.+++++.|+.+|+
T Consensus 281 ~~~~---------~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v 315 (350)
T 1g8p_A 281 IALG---------SDGLRGELTLLRSARALAALEGATAVGRDHL 315 (350)
T ss_dssp HHSS---------SCSHHHHHHHHHHHHHHHHHTTCSBCCHHHH
T ss_pred HHhC---------CCCccHHHHHHHHHHHHHHHcCCCcCCHHHH
Confidence 7653 1178999999999999999999999999987
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.79 E-value=1.6e-19 Score=200.60 Aligned_cols=232 Identities=27% Similarity=0.290 Sum_probs=161.4
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcE----EEecCCCc----
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGI----YVCGNATT---- 325 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~----~~~~~~~~---- 325 (581)
..++|++.+++.+..++..|. +++|+||||||||+||++++..++... .+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~----------------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR----------------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP 104 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC----------------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC
T ss_pred ceEECchhhHhhccccccCCC----------------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC
Confidence 458999999999999998874 899999999999999999999986432 12111111
Q ss_pred --------------------------------------------------------------cCCceeEEEecCc-----
Q 040742 326 --------------------------------------------------------------KAGLTVAVVKDSV----- 338 (581)
Q Consensus 326 --------------------------------------------------------------~~~l~~~~~~~~~----- 338 (581)
...+++....+..
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 0001111111100
Q ss_pred -cc-cceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCe----------eEeeCCCeEEEEeeCCC
Q 040742 339 -TN-DYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGL----------VASLSARTSVLAAANPV 405 (581)
Q Consensus 339 -~~-~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~----------~~~~~~~~~viaa~Np~ 405 (581)
++ ...+.+|.+..|++|++||||++++++..+ .|+++|+++.+.+. |. ....+.++.||+|+|+.
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~ 262 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLD 262 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHH
T ss_pred cccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEec--ccccccccccCCCCccceeEEEEEecCHH
Confidence 11 122477888889999999999999999888 99999999998876 33 45677899999999984
Q ss_pred CCCCCCccChhhhcCCChhhhccccE---eEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccc
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDL---VFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSV 482 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdl---i~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (581)
.. + .++++|++||++ .+.+.+....
T Consensus 263 ~~---------~--~l~~~l~~R~~v~~i~i~l~~~~~~----------------------------------------- 290 (604)
T 3k1j_A 263 TV---------D--KMHPALRSRIRGYGYEVYMRTTMPD----------------------------------------- 290 (604)
T ss_dssp HH---------H--HSCHHHHHHHHHHSEEEECCSEEEC-----------------------------------------
T ss_pred HH---------h--hcCHHHHHHhhccceEeeccccccC-----------------------------------------
Confidence 10 0 289999999973 3332221110
Q ss_pred cccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHH
Q 040742 483 KSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYART-----FVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLE 557 (581)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~-----~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~le 557 (581)
..+.++.|+.+..+ ...|.+++++.+.|.++|...... ....++++|+++
T Consensus 291 ----------------------~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~---r~~l~~~~R~l~ 345 (604)
T 3k1j_A 291 ----------------------TIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGR---KGHLTLRLRDLG 345 (604)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCS---TTEEECCHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcc---ccccccCHHHHH
Confidence 11123333332221 124679999999999988743211 123456899999
Q ss_pred HHHHHHHHHHhccCCCCCCcccc
Q 040742 558 SLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 558 slirla~a~A~l~~~~~V~~~Dv 580 (581)
+++|.|.++|+.++++.|+.+||
T Consensus 346 ~llr~A~~~A~~~~~~~I~~edv 368 (604)
T 3k1j_A 346 GIVRAAGDIAVKKGKKYVEREDV 368 (604)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHH
T ss_pred HHHHHHHHHHHhcCcccccHHHH
Confidence 99999999999999999999987
No 9
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.73 E-value=1.3e-17 Score=169.41 Aligned_cols=263 Identities=19% Similarity=0.232 Sum_probs=154.7
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCc-cccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCC
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKV-PVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNA 323 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~-~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~ 323 (581)
+.+.+.+.+.|+|++.+++++..++.......... ... .-+...++||+||||||||++|+++++.++..+. ++...
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~ 85 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQ-EPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSC-HHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhc-ccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchh
Confidence 34667777899999999999988776521000000 000 0011238999999999999999999999876554 44433
Q ss_pred CccCCceeEEEecCccccceeccceeeec-CceEEEEcCCCCCCHHH------------H-HHHHHHHccEEEEeeCCee
Q 040742 324 TTKAGLTVAVVKDSVTNDYAFEAGAMVLA-DSGLCCIDEFDKMSAEH------------Q-ALLEAMEQQCVSVAKAGLV 389 (581)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~g~l~~a-~~gil~iDEi~~~~~~~------------~-~L~~~me~~~i~i~k~g~~ 389 (581)
....++.+..........+...+|.+..+ .++|+||||++++..+. + .|+.+|+.+.+.... +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~-~-- 162 (310)
T 1ofh_A 86 FTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-G-- 162 (310)
T ss_dssp GSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETT-E--
T ss_pred cccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEeccc-c--
Confidence 32212211000000000001112333333 37899999999998543 5 889999988766531 2
Q ss_pred EeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcc
Q 040742 390 ASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPR 469 (581)
Q Consensus 390 ~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 469 (581)
.....++.+|+++|+.... ...++++|++||++++.++ .++.+....+. ..+..
T Consensus 163 ~~~~~~~~~i~~~~~~~~~---------~~~l~~~l~~R~~~~i~~~-~~~~~~~~~il----~~~~~------------ 216 (310)
T 1ofh_A 163 MVKTDHILFIASGAFQVAR---------PSDLIPELQGRLPIRVELT-ALSAADFERIL----TEPHA------------ 216 (310)
T ss_dssp EEECTTCEEEEEECCSSSC---------GGGSCHHHHHTCCEEEECC-CCCHHHHHHHH----HSSTT------------
T ss_pred cccCCcEEEEEcCCcccCC---------cccCCHHHHhhCCceEEcC-CcCHHHHHHHH----HhhHH------------
Confidence 2345678899998753110 0138899999999766654 45554444442 21100
Q ss_pred cccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHH-hcCCCcCCHHHHHHHHHHHHHHhhcCCCCCC
Q 040742 470 TAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYAR-TFVFPRMTKPAAEILQKFYLKLRDHNTSADS 548 (581)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar-~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~ 548 (581)
.++++|...++ ....+.+++++.+.|.++....+....
T Consensus 217 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~---- 255 (310)
T 1ofh_A 217 -------------------------------------SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE---- 255 (310)
T ss_dssp -------------------------------------CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC----
T ss_pred -------------------------------------HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc----
Confidence 12445544433 233457999999999988765432211
Q ss_pred ccccHHHHHHHHHHHHHHHhccCCC------CCCcccc
Q 040742 549 TPITARQLESLVRLAEARARLDLRE------EITAEDA 580 (581)
Q Consensus 549 ~~~t~R~leslirla~a~A~l~~~~------~V~~~Dv 580 (581)
..++|.+..+++.+.+.+.+.... .|+.+||
T Consensus 256 -~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v 292 (310)
T 1ofh_A 256 -NIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYV 292 (310)
T ss_dssp -CCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHH
T ss_pred -ccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHH
Confidence 237999999998876554433221 3777775
No 10
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=2.8e-17 Score=172.25 Aligned_cols=270 Identities=18% Similarity=0.164 Sum_probs=143.6
Q ss_pred HHHHhhCccccccHHHHHHHHHHHhcCcccccC----------CCC------CccccCceeeEEeCCCCChHHHHHHHHH
Q 040742 247 QIVQSICPSIYGHELVKAGITLALFGGVRKHSM----------YQN------KVPVRGDIHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 247 ~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~----------~~~------~~~~rg~~~iLL~G~pGtGKT~la~~la 310 (581)
.+.+.+...|+|++.+|+++..++......... +.+ ....++..++||+||||||||++|++++
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence 355666678999999999998887421100000 000 0001123489999999999999999999
Q ss_pred HHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH--------------HH-HHHH
Q 040742 311 AVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE--------------HQ-ALLE 374 (581)
Q Consensus 311 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~--------------~~-~L~~ 374 (581)
+.++..+. +........++.+..........+....+.+..+.++++||||++++... .+ .|+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~ 173 (376)
T 1um8_A 94 KHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLK 173 (376)
T ss_dssp HHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHH
T ss_pred HHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHH
Confidence 99976665 44433322232221111000111112234445567899999999999876 77 8999
Q ss_pred HHHccEEEEeeCCeeEeeCC--------CeEEEEeeCCC------CCCC-------CCc-c------Chh--------hh
Q 040742 375 AMEQQCVSVAKAGLVASLSA--------RTSVLAAANPV------GGHY-------NRA-K------TVN--------EN 418 (581)
Q Consensus 375 ~me~~~i~i~k~g~~~~~~~--------~~~viaa~Np~------~g~~-------~~~-~------~~~--------~~ 418 (581)
+|+.+.+.+...|.....+. ++.+|+|+|.. ..++ ... . .+. ..
T Consensus 174 ~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 253 (376)
T 1um8_A 174 IVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVT 253 (376)
T ss_dssp HHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHH
T ss_pred HhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhh
Confidence 99988776654454443333 34556665531 0011 000 0 000 02
Q ss_pred cCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCC
Q 040742 419 LKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKD 498 (581)
Q Consensus 419 ~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (581)
..+.++|++||+.++.+++... +....++.+.++
T Consensus 254 ~~~~p~l~~R~~~~i~~~~l~~-~~l~~i~~~~~~--------------------------------------------- 287 (376)
T 1um8_A 254 YGLIPELIGRLPVLSTLDSISL-EAMVDILQKPKN--------------------------------------------- 287 (376)
T ss_dssp TTCCHHHHTTCCEEEECCCCCH-HHHHHHHHSSTT---------------------------------------------
T ss_pred cCCChHHhcCCCceeeccCCCH-HHHHHHHhhhHH---------------------------------------------
Confidence 3578999999998877665544 333333211000
Q ss_pred CCCCCCCHHHHHHHHHHH-HhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCC----
Q 040742 499 GDFHPLPAPLLRKYIAYA-RTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLRE---- 573 (581)
Q Consensus 499 ~~~~~i~~~~lk~yi~~a-r~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~---- 573 (581)
.++++|.... .......+++++.+.|..+.... ..++|.|..++..+...+..+...
T Consensus 288 --------~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~----------~~~~R~L~~~le~~~~~~~~~~~~~~~~ 349 (376)
T 1um8_A 288 --------ALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALER----------KTGARGLRAIIEDFCLDIMFDLPKLKGS 349 (376)
T ss_dssp --------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT----------TCTGGGHHHHHHHHHHHHHHTGGGGTTS
T ss_pred --------HHHHHHHHHHhhcCceEEECHHHHHHHHHHhccc----------ccCcHHHHHHHHHHHHHHHhhccCCCCC
Confidence 1244444322 12234468999999998874421 246899888887766554443321
Q ss_pred --CCCcccc
Q 040742 574 --EITAEDA 580 (581)
Q Consensus 574 --~V~~~Dv 580 (581)
.|+.+|+
T Consensus 350 ~~~i~~~~v 358 (376)
T 1um8_A 350 EVRITKDCV 358 (376)
T ss_dssp EEEECHHHH
T ss_pred EEEEeHHHh
Confidence 4777665
No 11
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=2.2e-16 Score=157.18 Aligned_cols=234 Identities=19% Similarity=0.157 Sum_probs=137.1
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC----cEEEecCCCccC--
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR----GIYVCGNATTKA-- 327 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~----~~~~~~~~~~~~-- 327 (581)
.+++|++...+.++..+..... ...++||+||||||||++|+++++.+++ -++++.......
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~------------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~ 73 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP------------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT------------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhC------------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence 3467887777666544332110 0138999999999999999999998863 223443322110
Q ss_pred --CceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 328 --GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 328 --~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
.+.+. ......|......|.+..+++|++||||++.++.+.+ .|+.+|+++.+.. .|.....+.++.+|+|+|+
T Consensus 74 ~~~l~g~-~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 74 DSELFGH-EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELER--VGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp HHHHHCC-C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECC--CCC--CEECCCEEEEEESS
T ss_pred HHHhcCC-cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeec--CCCcccccCCeEEEEecCc
Confidence 00000 0001112222245566667889999999999999888 8999999987643 3555566778999999998
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEe-EEcCCCCCHHH-HHHHHHHHHhhccCCCCCcccccCcccccCCCccccccc
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLV-FILLDKPDELL-DKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSV 482 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli-~~~~d~~~~~~-d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (581)
.... ....-.+.++|++||+.+ +.+++..+... ...++.+.+.
T Consensus 151 ~~~~------~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~----------------------------- 195 (265)
T 2bjv_A 151 DLPA------MVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAI----------------------------- 195 (265)
T ss_dssp CHHH------HHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHH-----------------------------
T ss_pred CHHH------HHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHH-----------------------------
Confidence 5110 111123789999999743 44444333212 2222222222
Q ss_pred cccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHH
Q 040742 483 KSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRL 562 (581)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirl 562 (581)
++.......+.+.+++++.+.|..+ .++-++|+|+.+++.
T Consensus 196 ----------------------------~~~~~~~~~~~~~~~~~a~~~L~~~------------~~~gn~reL~~~l~~ 235 (265)
T 2bjv_A 196 ----------------------------QMCREIKLPLFPGFTERARETLLNY------------RWPGNIRELKNVVER 235 (265)
T ss_dssp ----------------------------HHHHHTTCSSCCCBCHHHHHHHHHS------------CCTTHHHHHHHHHHH
T ss_pred ----------------------------HHHHHhCCCcccCcCHHHHHHHHhC------------CCCCCHHHHHHHHHH
Confidence 2111001111147899999888753 346689999999998
Q ss_pred HHHHHhccCCCCCCcccc
Q 040742 563 AEARARLDLREEITAEDA 580 (581)
Q Consensus 563 a~a~A~l~~~~~V~~~Dv 580 (581)
+.+.+. ...|+.+|+
T Consensus 236 ~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 236 SVYRHG---TSDYPLDDI 250 (265)
T ss_dssp HHHHHC---CSSSCBCCC
T ss_pred HHHhCC---CCcCcHHHc
Confidence 877664 457777775
No 12
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.67 E-value=4.9e-16 Score=157.74 Aligned_cols=230 Identities=22% Similarity=0.261 Sum_probs=143.7
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc----EEEecCCCccCCce
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG----IYVCGNATTKAGLT 330 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~----~~~~~~~~~~~~l~ 330 (581)
.++|+....+.+...+.... ..+.++||+||||||||++|+++++.+++. +.++...... .+.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~-~l~ 69 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA------------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNE-SLL 69 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC------------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCH-HHH
T ss_pred CcEECCHHHHHHHHHHHHHh------------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCCh-HHH
Confidence 57787776666655443211 011389999999999999999999987542 2343322211 110
Q ss_pred eE----EEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 331 VA----VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 331 ~~----~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
.+ ......+|......|.+..+++|++||||++.++.+.+ .|+.+|+++.+.. .|.....+.++.+|+|+|+.
T Consensus 70 ~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~--~g~~~~~~~~~riI~atn~~ 147 (304)
T 1ojl_A 70 ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQR--VGSNQTISVDVRLIAATHRD 147 (304)
T ss_dssp HHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCB--TTBCCCCBCCCEEEEEESSC
T ss_pred HHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeee--cCCcccccCCeEEEEecCcc
Confidence 00 00111123223345667778899999999999999888 8999999987643 36666777889999999985
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEE-cCCCCCHHHH-HHHHHHHHhhccCCCCCcccccCcccccCCCcccccccc
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFI-LLDKPDELLD-KRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVK 483 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~-~~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (581)
.. .....-.+.++|++||+.+.+ +|+..+...| ..++.+.+.
T Consensus 148 l~------~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~------------------------------ 191 (304)
T 1ojl_A 148 LA------EEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLR------------------------------ 191 (304)
T ss_dssp HH------HHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHH------------------------------
T ss_pred HH------HHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHH------------------------------
Confidence 10 111122378999999975433 4433322222 222222222
Q ss_pred ccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhc--CCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHH
Q 040742 484 SGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTF--VFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVR 561 (581)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~--i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslir 561 (581)
++ ++.. -.+.+++++.+.|..| .+|-++|+|+.+++
T Consensus 192 ---------------------------~~---~~~~~~~~~~~s~~a~~~L~~~------------~wpGnvReL~~~l~ 229 (304)
T 1ojl_A 192 ---------------------------RF---AERNRKVVKGFTPQAMDLLIHY------------DWPGNIRELENAIE 229 (304)
T ss_dssp ---------------------------HH---HHHTTCCCCCBCHHHHHHHHHC------------CCSSHHHHHHHHHH
T ss_pred ---------------------------HH---HHHhccCccCCCHHHHHHHHcC------------CCCCCHHHHHHHHH
Confidence 22 1111 1246899999988874 35779999999999
Q ss_pred HHHHHHhccCCCCCCcccc
Q 040742 562 LAEARARLDLREEITAEDA 580 (581)
Q Consensus 562 la~a~A~l~~~~~V~~~Dv 580 (581)
.+...|. ...|+.+|+
T Consensus 230 ~~~~~~~---~~~i~~~~l 245 (304)
T 1ojl_A 230 RAVVLLT---GEYISEREL 245 (304)
T ss_dssp HHHHHCC---SSSBCGGGS
T ss_pred HHHHhCC---CCcccHHhh
Confidence 8877654 456777775
No 13
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.66 E-value=2e-17 Score=172.47 Aligned_cols=260 Identities=19% Similarity=0.198 Sum_probs=139.4
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCC-CccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCc
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQN-KVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATT 325 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~-~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~ 325 (581)
+.+.+...|+|++.+++.+..++............ ........++||+||||||||++|+++++.++..++ ++.....
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 44445556999999999998877422110000000 000012248999999999999999999999977665 4433222
Q ss_pred cCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH--------------HH-HHHHHHHccEEEEeeCCeeE
Q 040742 326 KAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE--------------HQ-ALLEAMEQQCVSVAKAGLVA 390 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~--------------~~-~L~~~me~~~i~i~k~g~~~ 390 (581)
..++.+..........+...++.+..+.++|+||||++++... .+ .|+++|+...+.+...+...
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 89 EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----------
T ss_pred ccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccc
Confidence 2222111000000011111223334456899999999988765 67 89999994444332222221
Q ss_pred e--------eCCCeEEEEeeCCCC---------CC-----CCC----------ccChhhhc--------CCChhhhcccc
Q 040742 391 S--------LSARTSVLAAANPVG---------GH-----YNR----------AKTVNENL--------KMSAALLSRFD 430 (581)
Q Consensus 391 ~--------~~~~~~viaa~Np~~---------g~-----~~~----------~~~~~~~~--------~l~~all~RFd 430 (581)
. .-.+..+|+|+|... ++ |.. ...+.+.+ .+.++|++|||
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~ 248 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCC
T ss_pred cCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccC
Confidence 1 223445555555420 00 000 00011111 27899999999
Q ss_pred EeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHH
Q 040742 431 LVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLR 510 (581)
Q Consensus 431 li~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk 510 (581)
.++.+. .++.+....|+...++ .+++
T Consensus 249 ~~~~~~-pl~~~~~~~I~~~~~~-----------------------------------------------------~l~~ 274 (363)
T 3hws_A 249 VVATLN-ELSEEALIQILKEPKN-----------------------------------------------------ALTK 274 (363)
T ss_dssp EEEECC-CCCHHHHHHHHHSSTT-----------------------------------------------------CHHH
T ss_pred eeeecC-CCCHHHHHHHHHHHHH-----------------------------------------------------HHHH
Confidence 877654 4555554444321000 1244
Q ss_pred HHHHHH-HhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccC
Q 040742 511 KYIAYA-RTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDL 571 (581)
Q Consensus 511 ~yi~~a-r~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~ 571 (581)
+|.... ...+...+++++.+.|..+-.. .+.++|.|+.+|.-+...+-.++
T Consensus 275 ~~~~~~~~~~~~l~~~~~a~~~L~~~~~~----------~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 275 QYQALFNLEGVDLEFRDEALDAIAKKAMA----------RKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHHH----------TTCTTTTHHHHHHHHHHHHHHST
T ss_pred HHHHHHHhcCceEEECHHHHHHHHHhhcC----------CccCchHHHHHHHHHHHHHHHhc
Confidence 554332 2234456899999999875222 25679999999987766655544
No 14
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.64 E-value=3.2e-15 Score=154.05 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=103.0
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
..+++|++.+++.+...+........ ...++||+||||||||++|+++++.++..+. +++......
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~~~---------~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~---- 94 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKRNE---------CLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKS---- 94 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHTTS---------CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSH----
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcCC---------CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccch----
Confidence 35699999999988777664321100 1138999999999999999999999876654 443222100
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCC------eeEeeCCCeEEEEeeCC
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAG------LVASLSARTSVLAAANP 404 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g------~~~~~~~~~~viaa~Np 404 (581)
+. +.......++++++||||++.++.+.+ .|+.+|+++.+.+..++ ....++ ++.+|+|+|.
T Consensus 95 --------~~--~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~ 163 (338)
T 3pfi_A 95 --------GD--LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTR 163 (338)
T ss_dssp --------HH--HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESC
T ss_pred --------hH--HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCC
Confidence 11 011111245789999999999998888 89999999876553211 112233 5899999998
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
.. .++++|++||+.++.+.. ++.+....+
T Consensus 164 ~~-------------~l~~~L~~R~~~~i~l~~-~~~~e~~~i 192 (338)
T 3pfi_A 164 AG-------------MLSNPLRDRFGMQFRLEF-YKDSELALI 192 (338)
T ss_dssp GG-------------GSCHHHHTTCSEEEECCC-CCHHHHHHH
T ss_pred cc-------------ccCHHHHhhcCEEeeCCC-cCHHHHHHH
Confidence 42 178999999988776544 444443433
No 15
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.64 E-value=3.3e-15 Score=151.95 Aligned_cols=201 Identities=12% Similarity=0.127 Sum_probs=121.3
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cEE-E
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-V 319 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~ 319 (581)
.+..+.+.+...++|++.+++.+...+..+..... . +.+...++||+||||||||++|+++++.+.+ .+. +
T Consensus 7 ~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~-~----~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 7 KLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLK-D----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp HHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCS-C----TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC-C----CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 34557777888999999999999888775421100 0 0112238999999999999999999998743 232 3
Q ss_pred ecCCCccCCceeEEEecCccccce-----eccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 320 CGNATTKAGLTVAVVKDSVTNDYA-----FEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~~-----~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
............... ....+... .-.+.+..+.++++||||+++++++.+ .|+++|+++.+... .+.....
T Consensus 82 ~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~- 158 (311)
T 4fcw_A 82 DMTEYMEKHAVSRLI-GAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDF- 158 (311)
T ss_dssp EGGGCCSTTHHHHHH-CCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT-TSCEEEC-
T ss_pred ecccccccccHHHhc-CCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEEC-
Confidence 332221110000000 00000000 111223334578999999999999888 99999999988743 2333332
Q ss_pred CCeEEEEeeCCC-------CCCCCCccChhhh------cCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 394 ARTSVLAAANPV-------GGHYNRAKTVNEN------LKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 394 ~~~~viaa~Np~-------~g~~~~~~~~~~~------~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
.++.+|+|+|+. .+.......+.+. -.++++|++|||.++.+.+ ++.+....|+.+.+.
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p-~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP-LTKEQIRQIVEIQMS 230 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCC-CCHHHHHHHHHHHTH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCC-CCHHHHHHHHHHHHH
Confidence 357799999983 1111111122221 1489999999998777655 556666666555544
No 16
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.55 E-value=4.9e-14 Score=160.88 Aligned_cols=199 Identities=12% Similarity=0.119 Sum_probs=124.5
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCC
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNA 323 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~ 323 (581)
+..+.+.+...++|++.++..+..++...... ..+ +.+...++||+||||||||++|+++++.++..+. ++...
T Consensus 449 l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g-~~~----~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~ 523 (758)
T 1r6b_X 449 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAG-LGH----EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE 523 (758)
T ss_dssp HHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTT-CSC----TTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHhcc-cCC----CCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechh
Confidence 55677889999999999998877665422100 000 0112238999999999999999999999876554 44322
Q ss_pred Cc----cCCceeEEEecCcccc--ceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe
Q 040742 324 TT----KAGLTVAVVKDSVTND--YAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART 396 (581)
Q Consensus 324 ~~----~~~l~~~~~~~~~~~~--~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~ 396 (581)
.. ...+.+... ...|. .....+.+..+.++|+||||+++++++.+ .|+++|+++.++.. .|....+ .++
T Consensus 524 ~~~~~~~~~l~g~~~--g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~ 599 (758)
T 1r6b_X 524 YMERHTVSRLIGAPP--GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNV 599 (758)
T ss_dssp CSSSSCCSSSCCCCS--CSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTE
T ss_pred hcchhhHhhhcCCCC--CCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC-CCCEEec-CCe
Confidence 21 112221100 00000 00012333456689999999999999988 99999999998874 3555555 678
Q ss_pred EEEEeeCCCCCC-------CCC---ccChhhhc--CCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 397 SVLAAANPVGGH-------YNR---AKTVNENL--KMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 397 ~viaa~Np~~g~-------~~~---~~~~~~~~--~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
.||+|+|+.... |.. ...+.+.+ .++++|++|||.++.+ +.++++....|+.+.+.
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~-~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWF-DHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEEC-CCCCHHHHHHHHHHHHH
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceee-CCCCHHHHHHHHHHHHH
Confidence 999999984211 000 00111111 4899999999987554 55666666666555544
No 17
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.55 E-value=1.3e-14 Score=147.55 Aligned_cols=224 Identities=17% Similarity=0.140 Sum_probs=134.6
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccC--CCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC------
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSM--YQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR------ 315 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~--~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~------ 315 (581)
.+..+.+.+..+|+|++.+|+.+...+......... .+.. .-++..|+||+||||||||++|+++++.+..
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~-~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~ 99 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLA-HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK 99 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCC-SSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCC-CCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC
Confidence 345677777778999999999887443211000000 0000 0112248999999999999999999987632
Q ss_pred -cE-EEecCCCccCCceeEEEecCccccc-eeccceeeecCceEEEEcCCCCC---------CHHHH-HHHHHHHccEEE
Q 040742 316 -GI-YVCGNATTKAGLTVAVVKDSVTNDY-AFEAGAMVLADSGLCCIDEFDKM---------SAEHQ-ALLEAMEQQCVS 382 (581)
Q Consensus 316 -~~-~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~l~~a~~gil~iDEi~~~---------~~~~~-~L~~~me~~~i~ 382 (581)
.+ +++..... ..+ .|.. ....+.+..+.++++||||++.+ ....+ .|+..|+++
T Consensus 100 ~~~~~~~~~~l~-~~~---------~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~--- 166 (309)
T 3syl_A 100 GHLVSVTRDDLV-GQY---------IGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN--- 166 (309)
T ss_dssp CCEEEECGGGTC-CSS---------TTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC---
T ss_pred CcEEEEcHHHhh-hhc---------ccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC---
Confidence 22 23221110 000 0100 01122333456889999999977 56666 889999863
Q ss_pred EeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCc
Q 040742 383 VAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHS 462 (581)
Q Consensus 383 i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~ 462 (581)
+.++.+|+++|+.. ......++++|.+||+.++.+ +.|+.+....+..+.+..
T Consensus 167 ----------~~~~~~i~~~~~~~--------~~~~~~~~~~l~~R~~~~i~~-~~~~~~~~~~il~~~l~~-------- 219 (309)
T 3syl_A 167 ----------RDDLVVILAGYADR--------MENFFQSNPGFRSRIAHHIEF-PDYSDEELFEIAGHMLDD-------- 219 (309)
T ss_dssp ----------TTTCEEEEEECHHH--------HHHHHHHSTTHHHHEEEEEEE-CCCCHHHHHHHHHHHHHH--------
T ss_pred ----------CCCEEEEEeCChHH--------HHHHHhhCHHHHHhCCeEEEc-CCcCHHHHHHHHHHHHHH--------
Confidence 24678899998741 001112578999999876665 455555555553333331
Q ss_pred ccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhc
Q 040742 463 SAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDH 542 (581)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~ 542 (581)
....+++++.+.+..+....+..
T Consensus 220 ---------------------------------------------------------~~~~~~~~~~~~l~~~~~~~~~~ 242 (309)
T 3syl_A 220 ---------------------------------------------------------QNYQMTPEAETALRAYIGLRRNQ 242 (309)
T ss_dssp ---------------------------------------------------------TTCEECHHHHHHHHHHHHHHTTS
T ss_pred ---------------------------------------------------------cCCCCCHHHHHHHHHHHHHhccC
Confidence 12257888888888776655432
Q ss_pred CCCCCCccccHHHHHHHHHHHHHHHhcc
Q 040742 543 NTSADSTPITARQLESLVRLAEARARLD 570 (581)
Q Consensus 543 ~~~~~~~~~t~R~leslirla~a~A~l~ 570 (581)
.++-++|.+..+++.+...+..+
T Consensus 243 -----~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 243 -----PHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp -----SSCCHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCcHHHHHHHHHHHHHHHHHH
Confidence 34557999999988877655443
No 18
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.54 E-value=7.4e-14 Score=144.71 Aligned_cols=164 Identities=20% Similarity=0.226 Sum_probs=96.6
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccC--Cc
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKA--GL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~--~l 329 (581)
.+|.|.+.+|+.|...+.-... ..... ++.++..-.+||+||||||||.||+++|..++..++ +++...... |-
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~--~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFE--SLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHH--HHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccch
Confidence 4688888888877644321000 00000 000111126999999999999999999999988776 555432111 10
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-----------HH----HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-----------HQ----ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-----------~~----~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
+...+++ -|. .+ ......|+||||+|.+... .+ .|+..|+. .. -..
T Consensus 226 se~~vr~----lF~-~A---r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg---------~~--~~~ 286 (405)
T 4b4t_J 226 GSRMVRE----LFV-MA---REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG---------FE--TSK 286 (405)
T ss_dssp HHHHHHH----HHH-HH---HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT---------TT--CCC
T ss_pred HHHHHHH----HHH-HH---HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc---------cC--CCC
Confidence 0000000 000 00 0113579999999987421 11 34455542 11 134
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
++.||||||.+.. |++||++ |||..+. .+.|+.+....|.+..+
T Consensus 287 ~V~vIaATNrpd~-------------LDpAllRpGRfD~~I~-i~lPd~~~R~~Il~~~~ 332 (405)
T 4b4t_J 287 NIKIIMATNRLDI-------------LDPALLRPGRIDRKIE-FPPPSVAARAEILRIHS 332 (405)
T ss_dssp CEEEEEEESCSSS-------------SCHHHHSTTSSCCEEE-CCCCCHHHHHHHHHHHH
T ss_pred CeEEEeccCChhh-------------CCHhHcCCCcCceEEE-cCCcCHHHHHHHHHHHh
Confidence 6789999998631 9999998 9998665 57899888887754444
No 19
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.52 E-value=1.8e-14 Score=157.53 Aligned_cols=172 Identities=19% Similarity=0.242 Sum_probs=96.4
Q ss_pred HhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC-ccC
Q 040742 250 QSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT-TKA 327 (581)
Q Consensus 250 ~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~-~~~ 327 (581)
+.+..+++|++.+++.+...+.-..... ..+| .++||+||||||||+||++++..++..+. +..... ...
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~-------~~~g-~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTK-------SLKG-PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSS-------SCCS-CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcc-------cCCC-CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 3345679999999998854433111000 0111 38999999999999999999999876544 332221 111
Q ss_pred CceeEEEecCccccceecccee----e--ecCceEEEEcCCCCCCHH----HH-HHHHHHHccEEE-EeeCCeeEeeC-C
Q 040742 328 GLTVAVVKDSVTNDYAFEAGAM----V--LADSGLCCIDEFDKMSAE----HQ-ALLEAMEQQCVS-VAKAGLVASLS-A 394 (581)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~g~l----~--~a~~gil~iDEi~~~~~~----~~-~L~~~me~~~i~-i~k~g~~~~~~-~ 394 (581)
.+.+.. + ...| ..+|.+ . ...++++||||++++..+ .+ .|+++|+.+... +...+.....+ .
T Consensus 149 ~~~g~~-~-~~ig---~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 149 EIRGHR-R-TYVG---AMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp --------------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred hhhhHH-H-HHhc---cCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 111100 0 0001 111111 1 125679999999999876 34 678888753211 11112222222 5
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHH
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~ 449 (581)
++.+|+|+|+.. .++++|++||++ +. .+.|+.+.+..|+.
T Consensus 224 ~v~iI~ttN~~~-------------~l~~aL~~R~~v-i~-~~~~~~~e~~~Il~ 263 (543)
T 3m6a_A 224 KVLFIATANNLA-------------TIPGPLRDRMEI-IN-IAGYTEIEKLEIVK 263 (543)
T ss_dssp SCEEEEECSSTT-------------TSCHHHHHHEEE-EE-CCCCCHHHHHHHHH
T ss_pred ceEEEeccCccc-------------cCCHHHHhhcce-ee-eCCCCHHHHHHHHH
Confidence 689999999863 289999999974 33 45566666655543
No 20
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.2e-14 Score=146.95 Aligned_cols=163 Identities=21% Similarity=0.260 Sum_probs=95.1
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|.|.+.+|+.|...+.-... ..... +..++-.-.+||+||||||||.||+++|..+...++ +++.......
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~--~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~--- 256 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYE--EMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKY--- 256 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHH--HHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSS---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhcc---
Confidence 4577888888777554321000 00000 000111126999999999999999999999988776 5543321110
Q ss_pred EEEecCccccceeccceee---ecCceEEEEcCCCCCCHH-----------HH-H---HHHHHHccEEEEeeCCeeEeeC
Q 040742 332 AVVKDSVTNDYAFEAGAMV---LADSGLCCIDEFDKMSAE-----------HQ-A---LLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~---~a~~gil~iDEi~~~~~~-----------~~-~---L~~~me~~~i~i~k~g~~~~~~ 393 (581)
..+ ++..+. ..+. .....|+||||+|.+... .. . |+..|+. ..-.
T Consensus 257 --vGe---sek~ir-~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg-----------~~~~ 319 (437)
T 4b4t_I 257 --LGD---GPRLCR-QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG-----------FDDR 319 (437)
T ss_dssp --SSH---HHHHHH-HHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH-----------CCCS
T ss_pred --Cch---HHHHHH-HHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC-----------cCCC
Confidence 000 000000 0000 113579999999976321 12 3 3444432 1123
Q ss_pred CCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 394 ARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 394 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
.++.||||||.+.. |++||++ |||..+ ..+.|+.+....|.+..+
T Consensus 320 ~~ViVIaATNrpd~-------------LDpALlRpGRfD~~I-~v~lPd~~~R~~Il~~~l 366 (437)
T 4b4t_I 320 GDVKVIMATNKIET-------------LDPALIRPGRIDRKI-LFENPDLSTKKKILGIHT 366 (437)
T ss_dssp SSEEEEEEESCSTT-------------CCTTSSCTTTEEEEE-CCCCCCHHHHHHHHHHHH
T ss_pred CCEEEEEeCCChhh-------------cCHHHhcCCceeEEE-EcCCcCHHHHHHHHHHHh
Confidence 46889999998631 9999998 999854 468899988887754444
No 21
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8.9e-14 Score=146.15 Aligned_cols=166 Identities=23% Similarity=0.277 Sum_probs=98.7
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccC--Cc
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKA--GL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~--~l 329 (581)
.+|.|.+.+|+.|...+.-... ..... ++.++..-.+||+||||||||+||+++|..++..++ +++...... |-
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~--~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge 249 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYE--QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGE 249 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHH--HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHH--hCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccch
Confidence 4688888888877654431100 00000 000111125999999999999999999999988776 554432111 10
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCH-----------HH---H-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA-----------EH---Q-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~---~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
+...+++ - +. - .......|+||||+|.+.. .. . .|+..|+. . .-..
T Consensus 250 ~e~~ir~----l--F~-~-A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg---------~--~~~~ 310 (428)
T 4b4t_K 250 GPRMVRD----V--FR-L-ARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG---------F--DQST 310 (428)
T ss_dssp HHHHHHH----H--HH-H-HHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH---------S--CSSC
T ss_pred hHHHHHH----H--HH-H-HHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC---------C--CCCC
Confidence 0000000 0 00 0 0011357999999975321 11 1 45555542 1 1134
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
++.||||||.+. . |++||++ |||..+.+++.|+.+....|.+.++.
T Consensus 311 ~v~vI~aTN~~~---~----------LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 311 NVKVIMATNRAD---T----------LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp SEEEEEEESCSS---S----------CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred CEEEEEecCChh---h----------cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 578999999863 1 9999998 99998888889999888887655554
No 22
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.51 E-value=7.9e-14 Score=159.05 Aligned_cols=185 Identities=12% Similarity=0.133 Sum_probs=112.9
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC---CcE-EEecCC
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP---RGI-YVCGNA 323 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~---~~~-~~~~~~ 323 (581)
+.+.+...++|++.+++.+..++....... ..+.+...++||+||||||||++|+++++.+. ..+ +++...
T Consensus 485 l~~~l~~~viGq~~a~~~l~~~i~~~~~~~-----~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 485 MENILHSRVIGQDEAVVAVAKAVRRARAGL-----KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE 559 (758)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTTC-----SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG
T ss_pred HHHHHhCcCcChHHHHHHHHHHHHHHHccc-----CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh
Confidence 445566789999999988877766432100 00112223799999999999999999999872 222 344322
Q ss_pred CccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEee
Q 040742 324 TTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAA 402 (581)
Q Consensus 324 ~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~ 402 (581)
..... ... .+.+ .+.+..+.++|+||||+++++++.+ .|+++|+++.++.. +.......++.+|+|+
T Consensus 560 ~~~~~-~~~------~~~l---~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 560 YMEKH-STS------GGQL---TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMTS 627 (758)
T ss_dssp GCSSC-CCC---------C---HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEE
T ss_pred ccccc-ccc------cchh---hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEeC
Confidence 21111 000 0111 1222234578999999999999988 99999999987764 2233345678999999
Q ss_pred CCCCCCCCCccChhhh--cCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 403 NPVGGHYNRAKTVNEN--LKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 403 Np~~g~~~~~~~~~~~--~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|......+ .+... -.+.++|++|||.++.+ +.++++....|+.+.+.
T Consensus 628 n~~~~~~~---~~~~~~~~~f~p~l~~Rl~~~i~~-~~l~~~~~~~i~~~~l~ 676 (758)
T 3pxi_A 628 NVGASEKD---KVMGELKRAFRPEFINRIDEIIVF-HSLEKKHLTEIVSLMSD 676 (758)
T ss_dssp SSSTTCCH---HHHHHHHHHSCHHHHTTSSEEEEC-C--CHHHHHHHHHHHHH
T ss_pred CCChhhHH---HHHHHHHhhCCHHHHhhCCeEEec-CCCCHHHHHHHHHHHHH
Confidence 97532211 11111 12889999999986665 45555665666555443
No 23
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.51 E-value=1.9e-13 Score=139.64 Aligned_cols=152 Identities=25% Similarity=0.322 Sum_probs=98.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+++|++.+++.+...+....... ....++||+||||||||++|+++++.++..+. +.+......
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~---------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~----- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK---------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC---------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH-----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC---------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh-----
Confidence 568899988887765554211000 01138999999999999999999998766554 333221110
Q ss_pred EEecCccccceecccee--eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCC-----eeEeeCCCeEEEEeeCC
Q 040742 333 VVKDSVTNDYAFEAGAM--VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAG-----LVASLSARTSVLAAANP 404 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l--~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g-----~~~~~~~~~~viaa~Np 404 (581)
+.. .+.+ .+++++++||||++.++...+ .|+.+|+++.+.+..+. .......++.+|+|+|.
T Consensus 78 -------~~l---~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~ 147 (324)
T 1hqc_A 78 -------GDL---AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTR 147 (324)
T ss_dssp -------HHH---HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESC
T ss_pred -------HHH---HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCC
Confidence 000 0011 135689999999999998887 89999999887654211 11112346889999997
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
.. . ++++|++||+.++.+.. ++.+.
T Consensus 148 ~~-~------------~~~~l~~R~~~~i~l~~-~~~~e 172 (324)
T 1hqc_A 148 PG-L------------ITAPLLSRFGIVEHLEY-YTPEE 172 (324)
T ss_dssp CS-S------------CSCSTTTTCSCEEECCC-CCHHH
T ss_pred cc-c------------CCHHHHhcccEEEecCC-CCHHH
Confidence 52 1 77899999976566544 44433
No 24
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.4e-13 Score=144.78 Aligned_cols=165 Identities=24% Similarity=0.309 Sum_probs=96.3
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccC--Cc
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKA--GL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~--~l 329 (581)
.+|.|.+.+|+.|...+.-.-. ..... +..++..-.+||+||||||||+||+++|..++..++ +++...... |.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~--~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFK--DMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccch
Confidence 4688888888877654321100 00000 000111126999999999999999999999988776 554432111 00
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCH-----------HHH----HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA-----------EHQ----ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~~----~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
+...++. .+. - .......|+||||+|.+.. ..+ .|+..|+. . .-..
T Consensus 259 se~~ir~------lF~-~-A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg---------~--~~~~ 319 (434)
T 4b4t_M 259 GAKLVRD------AFA-L-AKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG---------F--SSDD 319 (434)
T ss_dssp HHHHHHH------HHH-H-HHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT---------S--CSSC
T ss_pred HHHHHHH------HHH-H-HHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc---------c--CCCC
Confidence 0000000 000 0 0011367999999976421 111 34455542 1 1134
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
++.||||||.+. . |++||++ |||..+. .+.|+.+....|.+..+.
T Consensus 320 ~ViVIaaTNrp~---~----------LD~AllRpGRfD~~I~-i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 320 RVKVLAATNRVD---V----------LDPALLRSGRLDRKIE-FPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp SSEEEEECSSCC---C----------CCTTTCSTTSEEEEEE-CCCCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCch---h----------cCHhHhcCCceeEEEE-eCCcCHHHHHHHHHHHhc
Confidence 688999999863 1 9999998 9998665 578999888887554443
No 25
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.1e-13 Score=143.06 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=95.2
Q ss_pred ccccccHHHHHHHHHHHhcCc-ccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccC--Cc
Q 040742 254 PSIYGHELVKAGITLALFGGV-RKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKA--GL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~-~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~--~l 329 (581)
.+|.|.+.+|+.|...+.-.. ...... ++.++..-.+||+||||||||+||+++|..+...++ +++...... |-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~--~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFA--TLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHH--HHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHH--HCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCH
Confidence 457888888877754332100 000000 000111126999999999999999999999988776 554332111 00
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-----------HH----HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-----------HQ----ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-----------~~----~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
+...++. .+. - .......|+||||+|.+... .. .|+..|+. . .-..
T Consensus 287 sek~ir~------lF~-~-Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg---------~--~~~~ 347 (467)
T 4b4t_H 287 GARMVRE------LFE-M-ARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG---------F--DPRG 347 (467)
T ss_dssp HHHHHHH------HHH-H-HHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS---------S--CCTT
T ss_pred HHHHHHH------HHH-H-HHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc---------c--CCCC
Confidence 0000000 000 0 00113579999999986421 12 23444432 1 1234
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
++.||||||.+.. |++||++ |||..+. .+.|+.+....|.+..+
T Consensus 348 ~ViVIaATNrpd~-------------LDpALlRpGRFD~~I~-i~lPd~~~R~~Ilk~~l 393 (467)
T 4b4t_H 348 NIKVMFATNRPNT-------------LDPALLRPGRIDRKVE-FSLPDLEGRANIFRIHS 393 (467)
T ss_dssp TEEEEEECSCTTS-------------BCHHHHSTTTCCEEEC-CCCCCHHHHHHHHHHHH
T ss_pred cEEEEeCCCCccc-------------CChhhhccccccEEEE-eCCcCHHHHHHHHHHHh
Confidence 6889999998631 9999998 9998554 67899988888755444
No 26
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=6.7e-13 Score=139.68 Aligned_cols=163 Identities=18% Similarity=0.194 Sum_probs=95.8
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|.|.+.+|+.|...+.-... ..... ++.++..-.+||+||||||||+||+++|..++..++ +++.......
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~--~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~--- 255 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQ--RVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKY--- 255 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHH--HHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSS---
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHH--hCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcccc---
Confidence 4578888888777544321100 00000 000111126999999999999999999999988776 5543321110
Q ss_pred EEEecCccccce-eccceee---ecCceEEEEcCCCCCCHH-----------HH----HHHHHHHccEEEEeeCCeeEee
Q 040742 332 AVVKDSVTNDYA-FEAGAMV---LADSGLCCIDEFDKMSAE-----------HQ----ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 332 ~~~~~~~~~~~~-~~~g~l~---~a~~gil~iDEi~~~~~~-----------~~----~L~~~me~~~i~i~k~g~~~~~ 392 (581)
.|+-. .....+. .....|+||||+|.+... .. .|+..|+. . .-
T Consensus 256 -------~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg---------~--~~ 317 (437)
T 4b4t_L 256 -------IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDG---------F--DN 317 (437)
T ss_dssp -------SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHS---------S--SC
T ss_pred -------chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhc---------c--cC
Confidence 01000 0000000 123689999999976321 11 35555542 1 11
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcc--ccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSR--FDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~R--Fdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
..++.||||||.+. . |++||++| ||..+. .+.|+.+....|.+..+.
T Consensus 318 ~~~vivI~ATNrp~---~----------LDpAllRpGRfD~~I~-i~lPd~~~R~~Il~~~~~ 366 (437)
T 4b4t_L 318 LGQTKIIMATNRPD---T----------LDPALLRPGRLDRKVE-IPLPNEAGRLEIFKIHTA 366 (437)
T ss_dssp TTSSEEEEEESSTT---S----------SCTTTTSTTSEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCch---h----------hCHHHhCCCccceeee-cCCcCHHHHHHHHHHHhc
Confidence 34578999999863 1 89999975 998554 578999888887655443
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.49 E-value=1.2e-13 Score=138.63 Aligned_cols=169 Identities=21% Similarity=0.227 Sum_probs=94.7
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|+|++.+++.+...+...... .... .+......++||+||||||||++|+++++.+...++ +.+...... ..+
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~~ 93 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFE--KVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIG 93 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHH--HHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC-STT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHH--hcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh-ccc
Confidence 45788888888776554321000 0000 000111238999999999999999999999877665 443221110 000
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCC-----------CHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEE
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKM-----------SAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVL 399 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~-----------~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~vi 399 (581)
.. ................+|+||||++.+ ....+ .|...++... + ...+.++.+|
T Consensus 94 ----~~-~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~------~--~~~~~~~~vI 160 (285)
T 3h4m_A 94 ----EG-ASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD------G--FDARGDVKII 160 (285)
T ss_dssp ----HH-HHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH------T--TCSSSSEEEE
T ss_pred ----hH-HHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh------C--CCCCCCEEEE
Confidence 00 000000000011123479999999987 33334 5555554310 1 1123468899
Q ss_pred EeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 400 AAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 400 aa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
+|+|... .+++++++ ||+.++. .+.|+.+....|.++.+
T Consensus 161 ~ttn~~~-------------~l~~~l~~~~Rf~~~i~-~~~p~~~~r~~il~~~~ 201 (285)
T 3h4m_A 161 GATNRPD-------------ILDPAILRPGRFDRIIE-VPAPDEKGRLEILKIHT 201 (285)
T ss_dssp EECSCGG-------------GBCHHHHSTTSEEEEEE-CCCCCHHHHHHHHHHHH
T ss_pred EeCCCch-------------hcCHHHcCCCcCCeEEE-ECCCCHHHHHHHHHHHH
Confidence 9999852 18899999 9988555 56777777666654443
No 28
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.48 E-value=1.3e-13 Score=147.04 Aligned_cols=205 Identities=15% Similarity=0.179 Sum_probs=127.0
Q ss_pred ccccccHHHH---HHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCc
Q 040742 254 PSIYGHELVK---AGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk---~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l 329 (581)
.+++|++.++ +.+...+..+.. .++||+||||||||++|+.+++.+...+. ++........
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~--------------~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~- 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL--------------HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKE- 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC--------------CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHH-
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC--------------cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHH-
Confidence 5699999998 677777766631 18999999999999999999999977655 4432211100
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCC
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGH 408 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~ 408 (581)
.+ ..+.........+.++++||||++.++...+ .|+..|+++. +.+|++++... .
T Consensus 91 ----ir----~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~---------------v~lI~att~n~-~ 146 (447)
T 3pvs_A 91 ----IR----EAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT---------------ITFIGATTENP-S 146 (447)
T ss_dssp ----HH----HHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS---------------CEEEEEESSCG-G
T ss_pred ----HH----HHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc---------------eEEEecCCCCc-c
Confidence 00 0000000001124578999999999998877 8999999743 44566664321 0
Q ss_pred CCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchh
Q 040742 409 YNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLV 488 (581)
Q Consensus 409 ~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (581)
+ .+.++|++||.+ +.+ ..++.+....+..+.+........
T Consensus 147 ~----------~l~~aL~sR~~v-~~l-~~l~~edi~~il~~~l~~~~~~~~---------------------------- 186 (447)
T 3pvs_A 147 F----------ELNSALLSRARV-YLL-KSLSTEDIEQVLTQAMEDKTRGYG---------------------------- 186 (447)
T ss_dssp G----------SSCHHHHTTEEE-EEC-CCCCHHHHHHHHHHHHHCTTTSST----------------------------
T ss_pred c----------ccCHHHhCceeE-Eee-CCcCHHHHHHHHHHHHHHHhhhhc----------------------------
Confidence 1 288999999964 444 455555555555555542111000
Q ss_pred hhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHh
Q 040742 489 SKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARAR 568 (581)
Q Consensus 489 ~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~ 568 (581)
. -...+++++.+.|..++ +-++|.+..+++.+.+.|.
T Consensus 187 ----------------------------~--~~~~i~~~al~~L~~~~-------------~Gd~R~lln~Le~a~~~a~ 223 (447)
T 3pvs_A 187 ----------------------------G--QDIVLPDETRRAIAELV-------------NGDARRALNTLEMMADMAE 223 (447)
T ss_dssp ----------------------------T--SSEECCHHHHHHHHHHH-------------CSCHHHHHHHHHHHHHHSC
T ss_pred ----------------------------c--ccCcCCHHHHHHHHHHC-------------CCCHHHHHHHHHHHHHhcc
Confidence 0 02357888888887752 2378999999998887776
Q ss_pred cc--CCCCCCcccc
Q 040742 569 LD--LREEITAEDA 580 (581)
Q Consensus 569 l~--~~~~V~~~Dv 580 (581)
.. ....|+.+||
T Consensus 224 ~~~~~~~~It~e~v 237 (447)
T 3pvs_A 224 VDDSGKRVLKPELL 237 (447)
T ss_dssp BCTTSCEECCHHHH
T ss_pred cccCCCCccCHHHH
Confidence 54 4567888775
No 29
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.46 E-value=1.6e-13 Score=143.90 Aligned_cols=207 Identities=23% Similarity=0.282 Sum_probs=136.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC---cEE-EecCCCcc----CCceeEEEecCccccceeccceeeecCceEEEEcC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR---GIY-VCGNATTK----AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDE 361 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~---~~~-~~~~~~~~----~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDE 361 (581)
.++|+.|++||||+.+|++++..+++ .+. ++...... ..|.+ ..+...+|.....+|.+..|++|++||||
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg-~~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG-YEKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHC-BCTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcC-CCCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 48999999999999999999999864 222 33322111 00111 11112234444567888899999999999
Q ss_pred CCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE-cCCCC
Q 040742 362 FDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI-LLDKP 439 (581)
Q Consensus 362 i~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~-~~d~~ 439 (581)
++.++.+.| .|+.+|+++.+... |.....+.++.+|+|||..- ....+.-.+.+.|+.|+..+.+ +|+..
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~~~l------~~~~~~g~fr~dl~~rl~~~~i~lPpLr 311 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKFYRL--GGRKEIEVNVRILAATNRNI------KELVKEGKFREDLYYRLGVIEIEIPPLR 311 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEECCB--TCCSBEECCCEEEEEESSCH------HHHHHTTSSCHHHHHHHTTEEEECCCGG
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeC--CCCceeeccEEEEEeCCCCH------HHHHHcCCccHHHHHhhcCCeecCCcch
Confidence 999999999 99999999987654 66666778899999999751 0111122377899999975544 33333
Q ss_pred CHHHH-HHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHh
Q 040742 440 DELLD-KRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYART 518 (581)
Q Consensus 440 ~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~ 518 (581)
+...| ..++.|.+. ++ +++
T Consensus 312 eR~~Di~~l~~~~l~---------------------------------------------------------~~---~~~ 331 (387)
T 1ny5_A 312 ERKEDIIPLANHFLK---------------------------------------------------------KF---SRK 331 (387)
T ss_dssp GCHHHHHHHHHHHHH---------------------------------------------------------HH---HHH
T ss_pred hccccHHHHHHHHHH---------------------------------------------------------HH---HHH
Confidence 32222 223333332 22 222
Q ss_pred cC--CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 519 FV--FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 519 ~i--~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
.- .+.+++++.+.+..| .+|-++|+|+.+++.|...|. ...++.+|+
T Consensus 332 ~~~~~~~~~~~a~~~l~~~------------~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l 380 (387)
T 1ny5_A 332 YAKEVEGFTKSAQELLLSY------------PWYGNVRELKNVIERAVLFSE---GKFIDRGEL 380 (387)
T ss_dssp TTCCCCEECHHHHHHHHHS------------CCTTHHHHHHHHHHHHHHHCC---SSEECHHHH
T ss_pred cCCCCCCCCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHhCC---CCcCcHHHC
Confidence 11 245899999998874 568899999999998887664 346666654
No 30
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.46 E-value=4.3e-13 Score=140.95 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=98.3
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|+|++.+++.+...+...... .... +. .....++||+||||||||++|+++++.++..++ ++... +..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~-----l~~ 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFT--GL-RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS-----LTS 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSC--GG-GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC-----C--
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhc--cc-CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH-----hhc
Confidence 46899999999887766321110 0000 00 011248999999999999999999999887665 44322 111
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCCC-----------HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEE
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS-----------AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVL 399 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~-----------~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~vi 399 (581)
...... ................+|+||||++.+. ...+ .|+..|+. .....+.++.||
T Consensus 187 ~~~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~~~~~~v~vI 256 (389)
T 3vfd_A 187 KYVGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG---------VQSAGDDRVLVM 256 (389)
T ss_dssp -----C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH---------HC-----CEEEE
T ss_pred cccchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc---------ccccCCCCEEEE
Confidence 111000 0000000000111235899999999873 2223 55666653 222234578999
Q ss_pred EeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 400 AAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 400 aa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
+|+|+.. . +++++++||+.++. .+.|+.+....+..+++.
T Consensus 257 ~atn~~~---~----------l~~~l~~R~~~~i~-i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 257 GATNRPQ---E----------LDEAVLRRFIKRVY-VSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp EEESCGG---G----------CCHHHHTTCCEEEE-CCCCCHHHHHHHHHHHHT
T ss_pred EecCCch---h----------cCHHHHcCcceEEE-cCCcCHHHHHHHHHHHHH
Confidence 9999852 1 88999999986444 567888887777766665
No 31
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.45 E-value=8.8e-13 Score=137.24 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=133.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCc--EE-EecCCCccCCcee----EEEecCccccceeccceeeecCceEEEEcCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRG--IY-VCGNATTKAGLTV----AVVKDSVTNDYAFEAGAMVLADSGLCCIDEF 362 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~--~~-~~~~~~~~~~l~~----~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi 362 (581)
.++|+.|++||||+.+|++++...++. +. ++..... ..+.. ...+...+|.....+|.+..|++|++||||+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~-~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIP-QELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSC-TTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCC-hHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecCh
Confidence 389999999999999999999987653 32 4433321 12211 1222333444445678888999999999999
Q ss_pred CCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEE-cCCCCC
Q 040742 363 DKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFI-LLDKPD 440 (581)
Q Consensus 363 ~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~-~~d~~~ 440 (581)
+.++...| .|+.+|+++.+... |.....+.++.+|+|+|... ......-.+.+.|+.|+..+-+ +|+..+
T Consensus 232 ~~l~~~~Q~~Ll~~l~~~~~~~~--g~~~~~~~~~rii~at~~~l------~~~v~~g~fr~dL~~rl~~~~i~lPpLre 303 (368)
T 3dzd_A 232 GELDQRVQAKLLRVLETGSFTRL--GGNQKIEVDIRVISATNKNL------EEEIKKGNFREDLYYRLSVFQIYLPPLRE 303 (368)
T ss_dssp GGSCHHHHHHHHHHHHHSEECCB--TCCCBEECCCEEEEEESSCH------HHHHHTTSSCHHHHHHHTSEEEECCCGGG
T ss_pred hhCCHHHHHHHHHHHHhCCcccC--CCCcceeeeeEEEEecCCCH------HHHHHcCCccHHHHHHhCCeEEeCCChhh
Confidence 99999999 99999999988755 55666778899999999751 0111122377899999977544 343322
Q ss_pred HHHH-HHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 040742 441 ELLD-KRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTF 519 (581)
Q Consensus 441 ~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~ 519 (581)
...| ..++.|.+. ++ ++..
T Consensus 304 R~~Di~~l~~~~l~---------------------------------------------------------~~---~~~~ 323 (368)
T 3dzd_A 304 RGKDVILLAEYFLK---------------------------------------------------------KF---AKEY 323 (368)
T ss_dssp STTHHHHHHHHHHH---------------------------------------------------------HH---HHHT
T ss_pred chhhHHHHHHHHHH---------------------------------------------------------HH---HHHc
Confidence 2222 223333322 22 2221
Q ss_pred C--CCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHH
Q 040742 520 V--FPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARA 567 (581)
Q Consensus 520 i--~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A 567 (581)
- .+.+++++.+.|..| .+|-++|+|+.+++.+...+
T Consensus 324 ~~~~~~~~~~a~~~L~~~------------~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 324 KKNCFELSEETKEYLMKQ------------EWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp TCCCCCBCHHHHHHHHTC------------CCTTHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCHHHHHHHHhC------------CCCcHHHHHHHHHHHHHHhC
Confidence 1 246999999999864 56889999999999877554
No 32
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.45 E-value=1.5e-12 Score=133.24 Aligned_cols=166 Identities=17% Similarity=0.165 Sum_probs=95.7
Q ss_pred ccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC-CCcEE-EecCCCccCCce
Q 040742 254 PSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS-PRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~-~~~~~-~~~~~~~~~~l~ 330 (581)
.+|.|++.+|+.+...+..... .....+. .....++||+||||||||+||+++++.+ ...++ +++...... ..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~---~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~-~~ 87 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGK---RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WL 87 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTT---CCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS-SC
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCC---CCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh-hh
Confidence 4689999999988765532110 0010000 1111379999999999999999999988 44443 444322110 00
Q ss_pred eEEEecCccccceeccceeeecCceEEEEcCCCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 331 VAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
+ .. .......-........+|+||||++.+.. ... .|+..|+.- . ..+.++.|
T Consensus 88 g----~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~---------~-~~~~~v~v 152 (322)
T 1xwi_A 88 G----ES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV---------G-VDNDGILV 152 (322)
T ss_dssp C----SC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS---------S-SCCTTEEE
T ss_pred h----HH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc---------c-ccCCCEEE
Confidence 0 00 00000000001122468999999998732 112 455555421 1 12356889
Q ss_pred EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
|+|+|.+. . +++++++|||..+. .+.|+.+....|.++.+
T Consensus 153 I~atn~~~---~----------ld~al~rRf~~~i~-i~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 153 LGATNIPW---V----------LDSAIRRRFEKRIY-IPLPEPHARAAMFKLHL 192 (322)
T ss_dssp EEEESCTT---T----------SCHHHHHTCCEEEE-CCCCCHHHHHHHHHHHH
T ss_pred EEecCCcc---c----------CCHHHHhhcCeEEE-eCCcCHHHHHHHHHHHH
Confidence 99999863 2 88999999987554 56788777776654444
No 33
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.44 E-value=1.7e-13 Score=140.33 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=98.7
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|+|++.+|+.+...+...... ..... ..+...++||+||||||||++|+++++.++..++ +++...... .
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~---~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~-- 91 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-W-- 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT---TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT-T--
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc---CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc-c--
Confidence 46899999999987766321110 00000 0122248999999999999999999999877655 433221000 0
Q ss_pred EEEecCccccce-eccce---eeecCceEEEEcCCCCCCHH-----------HH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 332 AVVKDSVTNDYA-FEAGA---MVLADSGLCCIDEFDKMSAE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 332 ~~~~~~~~~~~~-~~~g~---l~~a~~gil~iDEi~~~~~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
.|... ..... ......+|+||||++.+... .+ .|+..|+.-. ....+
T Consensus 92 -------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~ 154 (322)
T 3eie_A 92 -------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQG 154 (322)
T ss_dssp -------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCC
T ss_pred -------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCc
Confidence 01000 00000 11124589999999988642 23 5556554210 12346
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
+.||+|+|.+. . +++++++||+..+ ..+.|+.+....|.++.+.
T Consensus 155 v~vi~atn~~~---~----------ld~al~~Rf~~~i-~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 155 VLVLGATNIPW---Q----------LDSAIRRRFERRI-YIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp EEEEEEESCGG---G----------SCHHHHHHCCEEE-ECCCCCHHHHHHHHHHHHT
T ss_pred eEEEEecCChh---h----------CCHHHHcccCeEE-EeCCCCHHHHHHHHHHHhc
Confidence 88999999852 1 8999999998865 4567888877777555443
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.43 E-value=7.2e-13 Score=131.03 Aligned_cols=166 Identities=18% Similarity=0.210 Sum_probs=90.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+|+|++.+|+.+...+......... .........++||+||||||||++|+++++.+...++ +.+..... ..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~--~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~--~~-- 79 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERF--LQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE--VI-- 79 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS--SS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHH--HHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh--hc--
Confidence 56899999998875443211100000 0001122248999999999999999999998876554 44433210 00
Q ss_pred EEecCccccce-eccceeee---cCceEEEEcCCCCCCH------------HHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 333 VVKDSVTNDYA-FEAGAMVL---ADSGLCCIDEFDKMSA------------EHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 333 ~~~~~~~~~~~-~~~g~l~~---a~~gil~iDEi~~~~~------------~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
.+... ...+.+.. ...+++||||++.+.. ..+ .+.+.++.- . +. ..+.+
T Consensus 80 ------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~----~--~~--~~~~~ 145 (262)
T 2qz4_A 80 ------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEM----D--GM--GTTDH 145 (262)
T ss_dssp ------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHH----H--TC--CTTCC
T ss_pred ------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHh----h--Cc--CCCCC
Confidence 01000 00001111 1258999999999832 222 333333210 0 10 11346
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
+.+|+|+|... .+++++++ |||..+. .+.|+.+....+.++.+.
T Consensus 146 ~~vi~~tn~~~-------------~ld~~l~~~~R~~~~i~-i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 146 VIVLASTNRAD-------------ILDGALMRPGRLDRHVF-IDLPTLQERREIFEQHLK 191 (262)
T ss_dssp EEEEEEESCGG-------------GGGSGGGSTTSCCEEEE-CCSCCHHHHHHHHHHHHH
T ss_pred EEEEecCCChh-------------hcCHHHhcCCcCCeEEE-eCCcCHHHHHHHHHHHHH
Confidence 88999999752 17789998 9987555 567777776666555444
No 35
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.43 E-value=2.4e-12 Score=135.63 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=49.3
Q ss_pred HHHhhCccccccHHHHHHHHHHHhcCcccc-cCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 248 IVQSICPSIYGHELVKAGITLALFGGVRKH-SMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 248 l~~s~~p~I~G~e~vk~~lll~l~~g~~~~-~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+.+.+...|+|++.+|+++..++.....+. .....+... ...|+||+||||||||++++++|+.++..++
T Consensus 9 i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~-~~~~iLl~GppGtGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 9 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEV-TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTC-CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhhhcccccccccc-CCceEEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence 556667889999999999998886532111 000000000 1138999999999999999999999987665
No 36
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.42 E-value=1.5e-12 Score=128.62 Aligned_cols=162 Identities=20% Similarity=0.217 Sum_probs=90.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+|+|++.+|+.+...+..-....... ....+...++||+||||||||+++++++..++..++ +++...... +.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~- 87 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQ--KLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG- 87 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCC-
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHH--HcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhh-
Confidence 468899988887754322100000000 000111237999999999999999999998875544 544332111 100
Q ss_pred EEecCccccceeccceeee---cCceEEEEcCCCCCCH--------------HHH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 333 VVKDSVTNDYAFEAGAMVL---ADSGLCCIDEFDKMSA--------------EHQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~---a~~gil~iDEi~~~~~--------------~~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
. +...+ ...+.. ...+++||||++.+.. ... .++..|+.- .-+.
T Consensus 88 ---~---~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-----------~~~~ 149 (257)
T 1lv7_A 88 ---V---GASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNE 149 (257)
T ss_dssp ---C---CHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC-----------CSSS
T ss_pred ---h---hHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCc-----------ccCC
Confidence 0 00000 000111 1246999999966532 111 344545421 1145
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHH
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHI 451 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~i 451 (581)
++.||+|+|... . +++++++ |||..+. .+.|+.+....|.++.
T Consensus 150 ~~~vI~~tn~~~---~----------l~~~l~r~~rf~~~i~-i~~P~~~~r~~il~~~ 194 (257)
T 1lv7_A 150 GIIVIAATNRPD---V----------LDPALLRPGRFDRQVV-VGLPDVRGREQILKVH 194 (257)
T ss_dssp CEEEEEEESCTT---T----------SCGGGGSTTSSCEEEE-CCCCCHHHHHHHHHHH
T ss_pred CEEEEEeeCCch---h----------CCHHHcCCCcCCeEEE-eCCCCHHHHHHHHHHH
Confidence 688999999863 1 7889988 9998554 5667776666654433
No 37
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.42 E-value=2e-12 Score=130.52 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=97.4
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|+|++.+++.+...+...... .... +. .....++||+||||||||++|+++++.+...+. +++...... ..+
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~--~~-~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~~ 96 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFT--GL-RAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK-YVG 96 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSC--GG-GCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS-SCS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHh--cC-CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc-ccc
Confidence 56899999999887765432110 0000 00 011238999999999999999999999876554 443322110 000
Q ss_pred EEEecCccccce-eccceeeecCceEEEEcCCCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 332 AVVKDSVTNDYA-FEAGAMVLADSGLCCIDEFDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 332 ~~~~~~~~~~~~-~~~g~l~~a~~gil~iDEi~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
. .+... ...........+++||||++.+.. ..+ .|+..|+..... ....++.|
T Consensus 97 ~------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~v 162 (297)
T 3b9p_A 97 D------GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVV 162 (297)
T ss_dssp C------HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEE
T ss_pred h------HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEE
Confidence 0 00000 000011123468999999988742 223 466666542211 11245789
Q ss_pred EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|+|+|.+. . +++++++||+..+. .+.|+.+....+..+++.
T Consensus 163 i~~tn~~~---~----------l~~~l~~R~~~~i~-~~~p~~~~r~~il~~~~~ 203 (297)
T 3b9p_A 163 LAATNRPQ---E----------LDEAALRRFTKRVY-VSLPDEQTRELLLNRLLQ 203 (297)
T ss_dssp EEEESCGG---G----------BCHHHHHHCCEEEE-CCCCCHHHHHHHHHHHHG
T ss_pred EeecCChh---h----------CCHHHHhhCCeEEE-eCCcCHHHHHHHHHHHHH
Confidence 99999752 1 88999999987554 567777776666555544
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.42 E-value=9.5e-13 Score=136.63 Aligned_cols=169 Identities=18% Similarity=0.204 Sum_probs=99.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.+|+|++.+++.+...+........ ...+. .+...++||+||||||||++|+++++.+...++ +++...... ..+
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~-~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~-~~g- 159 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPD-IFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVG- 159 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTT-TSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS-STT-
T ss_pred HHhCChHHHHHHHHHHHHHHhhChH-hHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc-ccc-
Confidence 5689999999988776542110000 00000 111238999999999999999999999876655 443322110 000
Q ss_pred EEecCccccceeccceeeecCceEEEEcCCCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEE
Q 040742 333 VVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLA 400 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~via 400 (581)
.. ................+|+||||++.+.. ..+ .|+..|+. .....+.++.||+
T Consensus 160 ---~~-~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---------~~~~~~~~v~vI~ 226 (357)
T 3d8b_A 160 ---EG-EKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG---------ATTSSEDRILVVG 226 (357)
T ss_dssp ---HH-HHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEE
T ss_pred ---hH-HHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc---------ccccCCCCEEEEE
Confidence 00 00000000001123468999999987632 122 45565653 2222345789999
Q ss_pred eeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 401 AANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 401 a~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
|+|... . +++++++||+..+. .+.|+.+....+..+++.
T Consensus 227 atn~~~---~----------l~~~l~~Rf~~~i~-i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 227 ATNRPQ---E----------IDEAARRRLVKRLY-IPLPEASARKQIVINLMS 265 (357)
T ss_dssp EESCGG---G----------BCHHHHTTCCEEEE-CCCCCHHHHHHHHHHHHH
T ss_pred ecCChh---h----------CCHHHHhhCceEEE-eCCcCHHHHHHHHHHHHh
Confidence 999852 1 88999999986544 567887777777666665
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.39 E-value=4.8e-12 Score=131.68 Aligned_cols=133 Identities=18% Similarity=0.158 Sum_probs=82.9
Q ss_pred ceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEe
Q 040742 354 SGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLV 432 (581)
Q Consensus 354 ~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli 432 (581)
.+|+||||++.++.+.+ .|+..+++....+. ....+..+.++++++.. ....++++|++||..
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~----ii~t~~~~~~i~~t~~~-----------~~~~l~~~l~sR~~~- 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMAPVL----IMATNRGITRIRGTSYQ-----------SPHGIPIDLLDRLLI- 253 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE----EEEESCSEEECBTSSCE-----------EETTCCHHHHTTEEE-
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCCCee----eeecccceeeeeccCCC-----------CcccCCHHHHhhccE-
Confidence 36999999999998877 88888876321110 00001112222222211 001288999999966
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHH
Q 040742 433 FILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKY 512 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~y 512 (581)
+.+ +.++.+....+..+.+.
T Consensus 254 i~~-~~~~~~e~~~il~~~~~----------------------------------------------------------- 273 (368)
T 3uk6_A 254 VST-TPYSEKDTKQILRIRCE----------------------------------------------------------- 273 (368)
T ss_dssp EEE-CCCCHHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred EEe-cCCCHHHHHHHHHHHHH-----------------------------------------------------------
Confidence 343 44455544444222221
Q ss_pred HHHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 513 IAYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 513 i~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
. -...+++++.+.|.++.. +-++|.+..+++.|...|..+.+..|+.+||
T Consensus 274 -----~-~~~~~~~~~l~~l~~~~~------------~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v 323 (368)
T 3uk6_A 274 -----E-EDVEMSEDAYTVLTRIGL------------ETSLRYAIQLITAASLVCRKRKGTEVQVDDI 323 (368)
T ss_dssp -----H-TTCCBCHHHHHHHHHHHH------------HSCHHHHHHHHHHHHHHHHHTTCSSBCHHHH
T ss_pred -----H-cCCCCCHHHHHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 1 123578888887776543 1379999999999999999999999999886
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.38 E-value=1.5e-12 Score=134.96 Aligned_cols=168 Identities=20% Similarity=0.187 Sum_probs=98.2
Q ss_pred hCccccccHHHHHHHHHHHhcCcc-cccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCc
Q 040742 252 ICPSIYGHELVKAGITLALFGGVR-KHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGL 329 (581)
Q Consensus 252 ~~p~I~G~e~vk~~lll~l~~g~~-~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l 329 (581)
-..+|+|++.+|+.+...+..... ...... ..+...++||+||||||||+||+++++.+...++ +++.... ..+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~---~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~-~~~ 124 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKG---NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKW 124 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS---SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH-SCC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc---CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh-hhh
Confidence 346799999999988776532110 000000 0112237999999999999999999999876655 4332110 001
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-----------HH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
.+. . ................+|+||||++.+... .. .|+..|+.-. ..+.++.
T Consensus 125 ~g~----~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~ 189 (355)
T 2qp9_X 125 MGE----S-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVL 189 (355)
T ss_dssp -------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEE
T ss_pred cch----H-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeE
Confidence 000 0 000000000001124689999999998732 13 5566665311 1134688
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
||+|+|.+. .+++++++||+..+. .+.|+.+....|.++.+
T Consensus 190 vI~atn~~~-------------~ld~al~rRf~~~i~-i~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 190 VLGATNIPW-------------QLDSAIRRRFERRIY-IPLPDLAARTTMFEINV 230 (355)
T ss_dssp EEEEESCGG-------------GSCHHHHHTCCEEEE-CCCCCHHHHHHHHHHHH
T ss_pred EEeecCCcc-------------cCCHHHHcccCEEEE-eCCcCHHHHHHHHHHHH
Confidence 999999863 188999999988665 56788777776654444
No 41
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.38 E-value=1.6e-12 Score=150.10 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=113.8
Q ss_pred HhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cE-EEecCCCc
Q 040742 250 QSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GI-YVCGNATT 325 (581)
Q Consensus 250 ~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~-~~~~~~~~ 325 (581)
+.+...|+|++.+++.+..++...... ..+ +-+...++||+||||||||++|+++++.+.+ .+ +++.....
T Consensus 554 ~~l~~~viG~~~a~~~l~~~i~~~~~g-~~~----~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~ 628 (854)
T 1qvr_A 554 EELHKRVVGQDEAIRAVADAIRRARAG-LKD----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 628 (854)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHHHGGG-CSC----SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred HHHhcccCCcHHHHHHHHHHHHHHhcc-cCC----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhcc
Confidence 344467899999988887766543210 000 0111238999999999999999999998732 33 34433221
Q ss_pred cC----CceeEEE---ecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 326 KA----GLTVAVV---KDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 326 ~~----~l~~~~~---~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
.. .+.+... .....+.+ .+.+..+.++++||||+++++++.+ .|+++|+++.++.. .|..... .++.
T Consensus 629 ~~~~~s~l~g~~~~~~G~~~~g~l---~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~i 703 (854)
T 1qvr_A 629 EKHAVSRLIGAPPGYVGYEEGGQL---TEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTV 703 (854)
T ss_dssp SSGGGGGC--------------CH---HHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEE
T ss_pred chhHHHHHcCCCCCCcCccccchH---HHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeE
Confidence 11 1111100 00000111 1122234578999999999999988 89999999987643 2333333 3578
Q ss_pred EEEeeCCCCCCCCC-------ccChhh------hcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 398 VLAAANPVGGHYNR-------AKTVNE------NLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 398 viaa~Np~~g~~~~-------~~~~~~------~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
||+|+|.....+.. ...+.+ .-.+.++|++|||.++++.+ ++.+....|+.+.+.
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p-l~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP-LTKEQIRQIVEIQLS 771 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCC-CCHHHHHHHHHHHHH
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCC-CCHHHHHHHHHHHHH
Confidence 99999973111100 001111 12488999999998777655 566666666555554
No 42
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.38 E-value=5.4e-12 Score=134.70 Aligned_cols=166 Identities=18% Similarity=0.174 Sum_probs=94.0
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC-CCcEE-EecCCCccCCce
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS-PRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~-~~~~~-~~~~~~~~~~l~ 330 (581)
.+|+|++.+|+.+...+...... ....+ ......++||+||||||||+||+++++.+ ...++ +++.. +.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~---~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~-----l~ 205 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTG---KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD-----LV 205 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSG---GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhc---cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH-----HH
Confidence 56899999999888665321000 00000 01112379999999999999999999998 44333 33322 11
Q ss_pred eEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-----------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEE
Q 040742 331 VAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSV 398 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~v 398 (581)
........ ...............+|+||||++.+... .. .|+..|+. .. ..+.++.|
T Consensus 206 ~~~~g~~~-~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---------~~-~~~~~v~v 274 (444)
T 2zan_A 206 SKWLGESE-KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG---------VG-VDNDGILV 274 (444)
T ss_dssp ------CC-CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC---------SS-CCCSSCEE
T ss_pred hhhcchHH-HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC---------cc-cCCCCEEE
Confidence 11111100 00000000011124689999999988321 22 34444432 11 12456899
Q ss_pred EEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 399 LAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 399 iaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
|+|+|.+. . ++++|++||+.++. .+.|+.+....|.++.+
T Consensus 275 I~atn~~~---~----------ld~al~rRf~~~i~-i~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 275 LGATNIPW---V----------LDSAIRRRFEKRIY-IPLPEAHARAAMFRLHL 314 (444)
T ss_dssp EEEESCGG---G----------SCHHHHTTCCEEEE-CCCCCHHHHHHHHHHHH
T ss_pred EecCCCcc---c----------cCHHHHhhcceEEE-eCCcCHHHHHHHHHHHH
Confidence 99999862 1 88999999987554 57788777766644443
No 43
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.34 E-value=1.7e-11 Score=126.01 Aligned_cols=156 Identities=26% Similarity=0.315 Sum_probs=94.1
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEE
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAV 333 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~ 333 (581)
.++|++.++..+...+..|...... .-|++|+||||+|||+|+++++..++..+. ++|......
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~---------~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~------ 90 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEV---------LDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ------ 90 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCC---------CCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH------
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCC---------CCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH------
Confidence 4779999999888877654211000 028999999999999999999998865543 444322100
Q ss_pred EecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEe--eC---CeeEeeCCCeEEEEeeCCCCC
Q 040742 334 VKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVA--KA---GLVASLSARTSVLAAANPVGG 407 (581)
Q Consensus 334 ~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~--k~---g~~~~~~~~~~viaa~Np~~g 407 (581)
+... .-.-......|++|||++.+.+..+ .|+..|+...+.+. .+ .........+.+++++|...
T Consensus 91 ------~~l~--~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~- 161 (334)
T 1in4_A 91 ------GDMA--AILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG- 161 (334)
T ss_dssp ------HHHH--HHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-
T ss_pred ------HHHH--HHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-
Confidence 0000 0000122467999999999998666 78888876532210 00 00111223577777777642
Q ss_pred CCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 408 HYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 408 ~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
.+++++.+||.+... .|.++.+....+
T Consensus 162 ------------~Ls~~l~sR~~l~~~-Ld~~~~~~l~~i 188 (334)
T 1in4_A 162 ------------LLSSPLRSRFGIILE-LDFYTVKELKEI 188 (334)
T ss_dssp ------------GSCHHHHTTCSEEEE-CCCCCHHHHHHH
T ss_pred ------------cCCHHHHHhcCceee-CCCCCHHHHHHH
Confidence 189999999976544 466665554444
No 44
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.31 E-value=1.7e-12 Score=116.73 Aligned_cols=132 Identities=15% Similarity=0.124 Sum_probs=85.0
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC---cEEEecCCCccCCcee
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGNATTKAGLTV 331 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~~~~~~~l~~ 331 (581)
+++|+....+.+...+..-. ..+.|+||+||||||||++|+++++.+++ .+.+........
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a------------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS------------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT------------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcc----
Confidence 46777776666655443210 01138999999999999999999998743 221222211100
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCC
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYN 410 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~ 410 (581)
....|.+..+++|++||||++.++.+.| .|+.+|+. .+.++.+|+|+|....
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~-------------~~~~~~~I~~t~~~~~--- 118 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQ-------------EHRPFRLIGIGDTSLV--- 118 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHS-------------SSCSSCEEEEESSCHH---
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhh-------------cCCCEEEEEECCcCHH---
Confidence 1223455567889999999999999888 89999832 2345789999997521
Q ss_pred CccChhhhcCCChhhhccccEe
Q 040742 411 RAKTVNENLKMSAALLSRFDLV 432 (581)
Q Consensus 411 ~~~~~~~~~~l~~all~RFdli 432 (581)
.....-.+.+.|+.|+..+
T Consensus 119 ---~~~~~~~~~~~L~~rl~~~ 137 (145)
T 3n70_A 119 ---ELAASNHIIAELYYCFAMT 137 (145)
T ss_dssp ---HHHHHSCCCHHHHHHHHHH
T ss_pred ---HHHHcCCCCHHHHHHhcCC
Confidence 1112223778999998654
No 45
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.29 E-value=3.3e-11 Score=129.22 Aligned_cols=134 Identities=18% Similarity=0.118 Sum_probs=84.3
Q ss_pred eEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeE
Q 040742 355 GLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVF 433 (581)
Q Consensus 355 gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~ 433 (581)
+|++|||+++|+.+.+ +|+..||+. +..+.|++| |+....-.-...+...-.++++++|||.. +
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~-------------~~~~~il~t-n~~~~~i~~~~~~~~~~~l~~~i~sR~~~-~ 361 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESS-------------IAPIVIFAS-NRGNCVIRGTEDITSPHGIPLDLLDRVMI-I 361 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTST-------------TCCEEEEEE-CCSEEECBTTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcc-------------CCCEEEEec-CCccccccccccccccccCChhHHhhcce-e
Confidence 6999999999998887 999999863 222333344 54200000000001112389999999955 4
Q ss_pred EcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHH
Q 040742 434 ILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYI 513 (581)
Q Consensus 434 ~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi 513 (581)
. ...++.+....+..+...
T Consensus 362 ~-~~~~~~~e~~~iL~~~~~------------------------------------------------------------ 380 (456)
T 2c9o_A 362 R-TMLYTPQEMKQIIKIRAQ------------------------------------------------------------ 380 (456)
T ss_dssp E-CCCCCHHHHHHHHHHHHH------------------------------------------------------------
T ss_pred e-CCCCCHHHHHHHHHHHHH------------------------------------------------------------
Confidence 4 344444443333222211
Q ss_pred HHHHhcCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCccccC
Q 040742 514 AYARTFVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDAL 581 (581)
Q Consensus 514 ~~ar~~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv~ 581 (581)
. . ...+++++.+.|..+... -++|....+++.|.+.|.++++..|+.+||+
T Consensus 381 -~--~--~~~~~~~~~~~i~~~a~~------------g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~ 431 (456)
T 2c9o_A 381 -T--E--GINISEEALNHLGEIGTK------------TTLRYSVQLLTPANLLAKINGKDSIEKEHVE 431 (456)
T ss_dssp -H--H--TCCBCHHHHHHHHHHHHH------------SCHHHHHHTHHHHHHHHHHTTCSSBCHHHHH
T ss_pred -H--h--CCCCCHHHHHHHHHHccC------------CCHHHHHHHHHHHHHHHhhcCCCccCHHHHH
Confidence 0 1 124788888877764321 2799999999999999999999999999973
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.29 E-value=2.3e-11 Score=130.64 Aligned_cols=209 Identities=13% Similarity=0.177 Sum_probs=123.6
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC----------CcEE-Eec
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP----------RGIY-VCG 321 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~----------~~~~-~~~ 321 (581)
...|+|++...+.+...+..... .|+||+||||||||++++++++.+. ..++ ++.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~--------------~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTK--------------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSS--------------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCccCcHHHHHHHHHHHhccCC--------------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 34699999999988877765321 2899999999999999999998862 1222 110
Q ss_pred CCCccCCceeEEEecCccccceeccc----eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe
Q 040742 322 NATTKAGLTVAVVKDSVTNDYAFEAG----AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART 396 (581)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~g----~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~ 396 (581)
. ....|.+..... .+..+.++|+||| ...+.+ .|+.+|+.+ .+
T Consensus 245 ~-------------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g---------------~v 292 (468)
T 3pxg_A 245 G-------------TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------EL 292 (468)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SC
T ss_pred C-------------ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC---------------CE
Confidence 0 001122111101 1112346899999 333344 455666533 47
Q ss_pred EEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCc
Q 040742 397 SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTE 476 (581)
Q Consensus 397 ~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 476 (581)
.+|+|+|+... ...+.++++|.+||.. +..+.|+.+....|..+++..+...
T Consensus 293 ~vI~at~~~e~--------~~~~~~~~al~~Rf~~--i~v~~p~~e~~~~iL~~~~~~~~~~------------------ 344 (468)
T 3pxg_A 293 QCIGATTLDEY--------RKYIEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEAH------------------ 344 (468)
T ss_dssp EEEEECCTTTT--------HHHHTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGGG------------------
T ss_pred EEEecCCHHHH--------HHHhhcCHHHHHhCcc--ceeCCCCHHHHHHHHHHHHHHHHHh------------------
Confidence 79999998631 1122388999999974 4457888887777766555432210
Q ss_pred cccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cCCHHHHHHHHHHHHHHhhcCCCCCCccccHHH
Q 040742 477 GLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFP-RMTKPAAEILQKFYLKLRDHNTSADSTPITARQ 555 (581)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p-~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~ 555 (581)
....++.+.+.....++.+++.- .+++.+.+++...-...+-.. ...|..++.
T Consensus 345 -----------------------~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~---~~~p~~i~~ 398 (468)
T 3pxg_A 345 -----------------------HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS---FTTPPNLKE 398 (468)
T ss_dssp -----------------------SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT---TSCCSSTHH
T ss_pred -----------------------cCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhcc---CCCchHHHH
Confidence 01236677777777787776543 367888888877655444322 234667777
Q ss_pred HHHHHH
Q 040742 556 LESLVR 561 (581)
Q Consensus 556 leslir 561 (581)
++..+.
T Consensus 399 l~~~i~ 404 (468)
T 3pxg_A 399 LEQKLD 404 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 47
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.28 E-value=6e-13 Score=119.40 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=84.9
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEE
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAV 333 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~ 333 (581)
+++|++...+.+...+.... ..+.++||+||||||||++|+++++.++ .+. ++... +.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~-----~~--- 63 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVE-----YL--- 63 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTT-----HH---
T ss_pred CceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhh-----CC---
Confidence 46777766666555443211 0113899999999999999999998776 222 22211 10
Q ss_pred EecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCc
Q 040742 334 VKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRA 412 (581)
Q Consensus 334 ~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~ 412 (581)
.. ...|.+..+++|++||||++.++.+.+ .|+++|+++. +.++.+|+|+|.....+
T Consensus 64 ------~~--~~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~~--- 120 (143)
T 3co5_A 64 ------ID--MPMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE------------RCRVRVIASCSYAAGSD--- 120 (143)
T ss_dssp ------HH--CHHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT------------TTTCEEEEEEEECTTTC---
T ss_pred ------hH--hhhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC------------CCCEEEEEecCCCHHHH---
Confidence 00 134455567789999999999999888 8999998752 45688999999752211
Q ss_pred cChhhhcCCChhhhccccEeEE
Q 040742 413 KTVNENLKMSAALLSRFDLVFI 434 (581)
Q Consensus 413 ~~~~~~~~l~~all~RFdli~~ 434 (581)
..- +.+.|+.||..+.+
T Consensus 121 ----~~~-~~~~L~~rl~~~~i 137 (143)
T 3co5_A 121 ----GIS-CEEKLAGLFSESVV 137 (143)
T ss_dssp ------C-HHHHHHHHSSSEEE
T ss_pred ----HhC-ccHHHHHHhcCcEE
Confidence 111 56788999765433
No 48
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=3.7e-11 Score=114.75 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=86.7
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC-----cEE-EecCCCcc
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR-----GIY-VCGNATTK 326 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~-----~~~-~~~~~~~~ 326 (581)
..+++|++.++..+...+..+.. .+++|+||||||||++++.+++.+.. .+. +.......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~~--------------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKNI--------------PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCC--------------CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred HHHHcCcHHHHHHHHHHHhCCCC--------------CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 34688999999888877765421 17999999999999999999986521 111 22211100
Q ss_pred CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 327 AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
... .... -..+ ............+++|||++.+..+.+ .|+..++.. +.++.+|+++|..
T Consensus 82 ~~~----~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~~~ 142 (226)
T 2chg_A 82 IDV----VRHK-IKEF-ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYV 142 (226)
T ss_dssp HHH----HHHH-HHHH-HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCG
T ss_pred hHH----HHHH-HHHH-hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCh
Confidence 000 0000 0000 000011123568999999999998776 888888752 2356788888864
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHH
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDEL 442 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~ 442 (581)
. .+.+++.+||. .+.+ ..++.+
T Consensus 143 ~-------------~~~~~l~~r~~-~i~~-~~~~~~ 164 (226)
T 2chg_A 143 S-------------RIIEPIQSRCA-VFRF-KPVPKE 164 (226)
T ss_dssp G-------------GSCHHHHTTSE-EEEC-CCCCHH
T ss_pred h-------------hcCHHHHHhCc-eeec-CCCCHH
Confidence 2 17789999997 3443 334433
No 49
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.26 E-value=2.6e-11 Score=129.54 Aligned_cols=161 Identities=24% Similarity=0.295 Sum_probs=92.6
Q ss_pred ccccccHHHHHHHHHHHh--cCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCce
Q 040742 254 PSIYGHELVKAGITLALF--GGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~--~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~ 330 (581)
.+|.|++.+|..+...+. .....- . ....+-..++||+||||||||+||++++..++..++ +++...... +.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~--~--~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~-~~ 90 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKF--N--RIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FV 90 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHH--H--TTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-CT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHH--h--hcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-Hh
Confidence 457888888776654322 110000 0 000111126999999999999999999998876655 544332110 00
Q ss_pred eEEEecCccccceeccceeeec---CceEEEEcCCCCCCHH--------------HH-HHHHHHHccEEEEeeCCeeEee
Q 040742 331 VAVVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMSAE--------------HQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~~~--------------~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
+ . +... ..+.+..+ ...|+||||++.+... .. .|+..|+.- ..
T Consensus 91 g------~-~~~~-~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~-----------~~ 151 (476)
T 2ce7_A 91 G------V-GAAR-VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF-----------DS 151 (476)
T ss_dssp T------H-HHHH-HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS-----------CG
T ss_pred c------c-cHHH-HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc-----------CC
Confidence 0 0 0000 00111111 3579999999887531 12 455555520 01
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
+.++.||+|+|.+. .+++++++ |||..+. .+.|+.+....|.++.+
T Consensus 152 ~~~viVIaaTn~~~-------------~Ld~allR~gRFd~~i~-i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 152 KEGIIVMAATNRPD-------------ILDPALLRPGRFDKKIV-VDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GGTEEEEEEESCGG-------------GSCGGGGSTTSSCEEEE-CCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCChh-------------hhchhhcccCcceeEee-cCCCCHHHHHHHHHHHH
Confidence 34688999999852 17889987 9998655 46788777666654433
No 50
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.24 E-value=5.2e-11 Score=121.65 Aligned_cols=150 Identities=20% Similarity=0.243 Sum_probs=96.5
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
..+++|++.+++.+...+..+... ..+|+.||||||||++++++++.++..+. +++......
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~-------------~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~---- 87 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIP-------------HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKID---- 87 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCC-------------SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHH----
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCC-------------eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHH----
Confidence 357899999999888777765311 14677788999999999999999875554 443321100
Q ss_pred EEEecCccccceeccceeeecCceEEEEcCCCCCC-HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCC
Q 040742 332 AVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS-AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHY 409 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~-~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~ 409 (581)
..++.. ..+ ....-.....++++|||++.+. .+.+ .|+..|+.. +..+.+|+|+|+..
T Consensus 88 -~i~~~~-~~~--~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~-------------~~~~~iI~~~n~~~--- 147 (324)
T 3u61_B 88 -FVRGPL-TNF--ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAY-------------SSNCSIIITANNID--- 147 (324)
T ss_dssp -HHHTHH-HHH--HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHH-------------GGGCEEEEEESSGG---
T ss_pred -HHHHHH-HHH--HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhC-------------CCCcEEEEEeCCcc---
Confidence 000000 000 0000111256899999999999 7777 899988852 24567888999752
Q ss_pred CCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHH
Q 040742 410 NRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHI 451 (581)
Q Consensus 410 ~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~i 451 (581)
.+.++|.+||.. + -...|+.+....+...+
T Consensus 148 ----------~l~~~l~sR~~~-i-~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 148 ----------GIIKPLQSRCRV-I-TFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp ----------GSCTTHHHHSEE-E-ECCCCCHHHHHHHHHHH
T ss_pred ----------ccCHHHHhhCcE-E-EeCCCCHHHHHHHHHHH
Confidence 288999999953 3 34566666555544333
No 51
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.23 E-value=9.6e-12 Score=125.41 Aligned_cols=145 Identities=14% Similarity=0.143 Sum_probs=79.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccc-eeeecCceEEEEcCCCCCCH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAG-AMVLADSGLCCIDEFDKMSA 367 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g-~l~~a~~gil~iDEi~~~~~ 367 (581)
..+||+||||||||+||+++|+.++..++ +++.... ....+.. .......+. .+. .......+|+||||+|++..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~-~~~~g~~-~~~i~~~f~-~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYR-EAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHH-CC---HH-HHHHHHHHH-HHHHHHTTSSCCCEEEECCC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhh-hccCchh-HHHHHHHHH-HHHHHHhcCCCeEEEEechhhhcC
Confidence 47999999999999999999999876654 4432210 0000000 000000000 000 00012468999999988764
Q ss_pred -------------HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccE
Q 040742 368 -------------EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDL 431 (581)
Q Consensus 368 -------------~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdl 431 (581)
..+ .|++.|+........+........++.||+|+|.... ++++|++ |||.
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~-------------ld~al~R~~R~d~ 180 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST-------------LYAPLIRDGRMEK 180 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC---------------CHHHHHHHEEE
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCccc-------------CCHHHhCCCCCce
Confidence 133 6888887543222111111223456889999997631 8899995 9998
Q ss_pred eEEcCCCCCHHHHHHHHHHHHh
Q 040742 432 VFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 432 i~~~~d~~~~~~d~~i~~~il~ 453 (581)
++. .|+.+....|.+.++.
T Consensus 181 ~i~---~P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 181 FYW---APTREDRIGVCTGIFR 199 (293)
T ss_dssp EEE---CCCHHHHHHHHHHHHG
T ss_pred eEe---CcCHHHHHHHHHHhcc
Confidence 665 3578887888776654
No 52
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=4.5e-11 Score=123.35 Aligned_cols=144 Identities=20% Similarity=0.199 Sum_probs=88.3
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC------cE-EEecCCCc
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR------GI-YVCGNATT 325 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~------~~-~~~~~~~~ 325 (581)
..+++|++.+++.+...+..+.. .|+||+||||||||++++++++.+.. .+ .+......
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~~--------------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSANL--------------PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTTC--------------CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred HHHhhCCHHHHHHHHHHHhcCCC--------------CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 35789999999988888776531 17999999999999999999987531 12 12221110
Q ss_pred cCCceeEEEecCccccceec---------cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 326 KAGLTVAVVKDSVTNDYAFE---------AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~---------~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
..+. ..+.. ..+... .+.......++++|||++.++...+ .|+..|++.. ..
T Consensus 102 ~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~ 163 (353)
T 1sxj_D 102 GISI----VREKV-KNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------------GV 163 (353)
T ss_dssp CHHH----HTTHH-HHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------------TT
T ss_pred chHH----HHHHH-HHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------------CC
Confidence 0000 00000 000000 0001123457999999999998877 8999998631 23
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
..++.++|... .+.+++.+||. .+.+. .++.+.
T Consensus 164 ~~~il~~~~~~-------------~l~~~l~sR~~-~i~~~-~~~~~~ 196 (353)
T 1sxj_D 164 TRFCLICNYVT-------------RIIDPLASQCS-KFRFK-ALDASN 196 (353)
T ss_dssp EEEEEEESCGG-------------GSCHHHHHHSE-EEECC-CCCHHH
T ss_pred ceEEEEeCchh-------------hCcchhhccCc-eEEeC-CCCHHH
Confidence 55666777542 17899999996 34433 344433
No 53
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.21 E-value=1.3e-10 Score=124.89 Aligned_cols=156 Identities=24% Similarity=0.281 Sum_probs=89.1
Q ss_pred ccccccHHHHHHHHHHHh--cCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCce
Q 040742 254 PSIYGHELVKAGITLALF--GGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~--~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~ 330 (581)
.+|.|++.+|..+...+. .... ....-+... .-++||+||||||||+|+++++..+...++ +++...... .
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~--~~~~lg~~i--p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~-~- 104 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPS--RFHEMGARI--PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-F- 104 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGG--GTTTTSCCC--CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS-C-
T ss_pred HHcCCcHHHHHHHHHHHHHhhchh--hhhhccCCC--CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh-h-
Confidence 457888888776654322 1111 001111111 125999999999999999999999876554 555432110 0
Q ss_pred eEEEecCccccceecc-ceeeec---CceEEEEcCCCCCCH-----------HH-H---HHHHHHHccEEEEeeCCeeEe
Q 040742 331 VAVVKDSVTNDYAFEA-GAMVLA---DSGLCCIDEFDKMSA-----------EH-Q---ALLEAMEQQCVSVAKAGLVAS 391 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~-g~l~~a---~~gil~iDEi~~~~~-----------~~-~---~L~~~me~~~i~i~k~g~~~~ 391 (581)
.+...... ..+..+ ..+++||||++.+.. +. + .|+..|+.+.
T Consensus 105 --------~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~----------- 165 (499)
T 2dhr_A 105 --------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE----------- 165 (499)
T ss_dssp --------TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------
T ss_pred --------hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------
Confidence 01000000 001111 247999999987641 11 1 3444444211
Q ss_pred eCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHH
Q 040742 392 LSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVS 448 (581)
Q Consensus 392 ~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~ 448 (581)
.+..+.++|++|.+.- +++++++ |||..+. .+.|+.+....|.
T Consensus 166 ~~~~viviAatn~p~~-------------LD~aLlr~gRfdr~i~-i~~Pd~~~R~~IL 210 (499)
T 2dhr_A 166 KDTAIVVMAATNRPDI-------------LDPALLRPGRFDRQIA-IDAPDVKGREQIL 210 (499)
T ss_dssp SSCCCEEEECCSCGGG-------------SCTTTSSTTSSCCEEE-CCCCCHHHHHHHH
T ss_pred cCccEEEEEecCChhh-------------cCcccccccccceEEe-cCCCCHHHHHHHH
Confidence 2345789999998621 8889998 8998554 5778877666653
No 54
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.20 E-value=4.3e-12 Score=126.06 Aligned_cols=129 Identities=27% Similarity=0.338 Sum_probs=74.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeec---CceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA---DSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a---~~gil~iDEi~~~~ 366 (581)
++||+||||||||++|+++++.+...++ +.+.... ..+.+ .... . ..+.+..+ ..+++||||++.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~-~~~~~------~~~~-~-~~~~~~~a~~~~~~vl~iDEid~l~ 116 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI-EMFVG------LGAS-R-VRDLFETAKKQAPSIIFIDEIDAIG 116 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT-TSCSS------SCSS-S-SSTTHHHHHHSCSCEEEESCGGGTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH-Hhhcc------hHHH-H-HHHHHHHHHhcCCeEEEEeChhhhc
Confidence 6999999999999999999998765443 3222111 00000 0000 0 00111111 34899999999987
Q ss_pred HHH---------------H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--c
Q 040742 367 AEH---------------Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--R 428 (581)
Q Consensus 367 ~~~---------------~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--R 428 (581)
... + .|+..|+. . ...+.++.||+|+|.... +++++++ |
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~---------~-~~~~~~v~vi~ttn~~~~-------------ld~~l~r~~R 173 (268)
T 2r62_A 117 KSRAAGGVVSGNDEREQTLNQLLAEMDG---------F-GSENAPVIVLAATNRPEI-------------LDPALMRPGR 173 (268)
T ss_dssp C----------CCCSCSSTTTTTTTTTC---------S-SCSCSCCEEEECBSCCTT-------------SCGGGGSSSS
T ss_pred ccccccccCCCchhHHHHHHHHHHHhhC---------c-ccCCCCEEEEEecCCchh-------------cCHhHcCCCC
Confidence 532 1 23333321 0 012345889999998631 7889998 9
Q ss_pred ccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 429 FDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 429 Fdli~~~~d~~~~~~d~~i~~~il 452 (581)
|+..+. .+.|+.+....+.++.+
T Consensus 174 f~~~i~-i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 174 FDRQVL-VDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCCCCB-CCCCCTTTHHHHHHHHT
T ss_pred CCeEEE-ecCcCHHHHHHHHHHHH
Confidence 987554 45566666555544433
No 55
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.20 E-value=6.1e-11 Score=120.00 Aligned_cols=164 Identities=20% Similarity=0.214 Sum_probs=96.3
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|.|++.+|+.+...+...... ... .+.......++||+||||||||++|++++..+...++ +++... ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~--~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l-----~~ 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKF--LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL-----LT 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHH--HHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH-----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHH--HHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH-----Hh
Confidence 35788888888776554321000 000 0000111137999999999999999999999876554 332211 00
Q ss_pred EEEecCccccceeccceeee---cCceEEEEcCCCCCCHH--------------HH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 332 AVVKDSVTNDYAFEAGAMVL---ADSGLCCIDEFDKMSAE--------------HQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l~~---a~~gil~iDEi~~~~~~--------------~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
... .. .... ..+.+.. ...+++||||++.+... .+ .|+..|+.- ...
T Consensus 88 ~~~-g~-~~~~--~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~-----------~~~ 152 (301)
T 3cf0_A 88 MWF-GE-SEAN--VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-----------STK 152 (301)
T ss_dssp HHH-TT-CTTH--HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS-----------CTT
T ss_pred hhc-Cc-hHHH--HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc-----------cCC
Confidence 000 00 0000 0011111 13589999999976533 23 677777631 113
Q ss_pred CCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 394 ARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 394 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
.++.||+|+|... . +++++++ ||+..+. .+.|+.+....|.++.+.
T Consensus 153 ~~v~vi~atn~~~---~----------ld~al~r~gRf~~~i~-i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 153 KNVFIIGATNRPD---I----------IDPAILRPGRLDQLIY-IPLPDEKSRVAILKANLR 200 (301)
T ss_dssp SSEEEEEEESCGG---G----------SCGGGGSTTSSCEEEE-CCCCCHHHHHHHHHHHHT
T ss_pred CCEEEEEecCCcc---c----------cChHHhcCCccceEEe-cCCcCHHHHHHHHHHHHc
Confidence 5689999999862 1 8899998 9997554 567888777777666665
No 56
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.18 E-value=1.2e-10 Score=145.48 Aligned_cols=152 Identities=18% Similarity=0.177 Sum_probs=95.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc-EE-EecCCCccCCceeEEEecCccccceeccceee----ecCceEEEEcCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG-IY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMV----LADSGLCCIDEFDK 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~----~a~~gil~iDEi~~ 364 (581)
|+||+||||||||++|+.+....+.. +. ++....+.+..+........ .......|... .....|+||||+|.
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~-~~~~~~~g~~~~P~~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHT-NYVTTSKGLTLLPKSDIKNLVLFCDEINL 1347 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHB-CCEEETTTEEEEEBSSSSCEEEEEETTTC
T ss_pred eEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHh-hhccccCCccccCCCCCceEEEEeccccc
Confidence 89999999999999996655544332 22 22211111110000000000 00001112221 11246999999987
Q ss_pred CCHH------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC--CCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 365 MSAE------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV--GGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 365 ~~~~------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
...+ .. .|.+.||.+.+...+.+....+ .++.+||||||+ .|++. ++++|++||.+ +.
T Consensus 1348 p~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~gGR~~----------l~~rllRrf~v--i~ 1414 (2695)
T 4akg_A 1348 PKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDPGRIP----------MSERFTRHAAI--LY 1414 (2695)
T ss_dssp SCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTSTTCCC----------CCHHHHTTEEE--EE
T ss_pred ccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccCCCcc----------CChhhhheeeE--EE
Confidence 5533 33 6788999988877665555555 679999999998 67777 99999999944 34
Q ss_pred CCCCCHHHHHHHHHHHHhhcc
Q 040742 436 LDKPDELLDKRVSEHIMSLHS 456 (581)
Q Consensus 436 ~d~~~~~~d~~i~~~il~~~~ 456 (581)
.+.|+.+....|...++..+.
T Consensus 1415 i~~P~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1415 LGYPSGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp CCCCTTTHHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHHHHh
Confidence 578888888888877777554
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=6.6e-11 Score=120.60 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=91.5
Q ss_pred hCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC------cEEEecCCCc
Q 040742 252 ICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR------GIYVCGNATT 325 (581)
Q Consensus 252 ~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~------~~~~~~~~~~ 325 (581)
-..+++|++.+++.+...+..+.. .|+||+||||||||++++++++.+.. .+.+.+....
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~~--------------~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGSM--------------PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER 88 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTCC--------------CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCCC--------------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC
Confidence 345799999999988877766521 28999999999999999999987521 1112221110
Q ss_pred cCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCC
Q 040742 326 KAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANP 404 (581)
Q Consensus 326 ~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np 404 (581)
..+. .++. -..+ ...+.+..+..++++|||++.++.+.+ .|+..|++. +..+.+|.++|.
T Consensus 89 ~~~~----~~~~-~~~~-~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~ 149 (327)
T 1iqp_A 89 GINV----IREK-VKEF-ARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNY 149 (327)
T ss_dssp HHHT----THHH-HHHH-HHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESC
T ss_pred chHH----HHHH-HHHH-HhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCC
Confidence 0000 0000 0000 011222224578999999999998877 899999862 234567777776
Q ss_pred CCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 405 VGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 405 ~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
.. .+.+++.+||. ++.+.+ ++.+....+
T Consensus 150 ~~-------------~l~~~l~sr~~-~~~~~~-l~~~~~~~~ 177 (327)
T 1iqp_A 150 SS-------------KIIEPIQSRCA-IFRFRP-LRDEDIAKR 177 (327)
T ss_dssp GG-------------GSCHHHHHTEE-EEECCC-CCHHHHHHH
T ss_pred cc-------------ccCHHHHhhCc-EEEecC-CCHHHHHHH
Confidence 42 17789999996 344443 444443333
No 58
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.14 E-value=1.2e-10 Score=125.22 Aligned_cols=161 Identities=22% Similarity=0.236 Sum_probs=96.2
Q ss_pred ccccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|.|++.+++.+...+...... ... ..+......++||+||||||||++|+++++.+...++ +++.... ..+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~--~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~-~~~~- 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALF--KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLA- 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHH--HHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH-TSCT-
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHH--HhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh-hhhc-
Confidence 46899998888876554321000 000 0000111238999999999999999999999876554 4432211 0010
Q ss_pred EEEecCccccc-eeccceeeec---CceEEEEcCCCCCCH-----------HHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 332 AVVKDSVTNDY-AFEAGAMVLA---DSGLCCIDEFDKMSA-----------EHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 332 ~~~~~~~~~~~-~~~~g~l~~a---~~gil~iDEi~~~~~-----------~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
|.. ....+.+..+ ..+++||||++.+.. ..+ .|+..|+.. ..+.+
T Consensus 280 --------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~-----------~~~~~ 340 (489)
T 3hu3_A 280 --------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAH 340 (489)
T ss_dssp --------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS-----------CTTSC
T ss_pred --------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc-----------ccCCc
Confidence 000 0001112122 246999999966542 345 688888742 12456
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHH
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHI 451 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~i 451 (581)
+.||+|+|... .+++++++ ||+..+. ...|+.+....|.+..
T Consensus 341 v~vIaaTn~~~-------------~Ld~al~r~gRf~~~i~-i~~P~~~eR~~IL~~~ 384 (489)
T 3hu3_A 341 VIVMAATNRPN-------------SIDPALRRFGRFDREVD-IGIPDATGRLEILQIH 384 (489)
T ss_dssp EEEEEEESCGG-------------GBCGGGGSTTSSCEEEE-CCCCCHHHHHHHHHHH
T ss_pred eEEEEecCCcc-------------ccCHHHhCCCcCceEEE-eCCCCHHHHHHHHHHH
Confidence 89999999862 17899998 9988654 5677777766664433
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.13 E-value=3.2e-10 Score=129.28 Aligned_cols=191 Identities=14% Similarity=0.203 Sum_probs=114.5
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC----------CCcEE-Eec
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS----------PRGIY-VCG 321 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~----------~~~~~-~~~ 321 (581)
...++|++...+.+...|..... .|+||+||||||||++|+++++.+ ...++ ++.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~--------------~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTK--------------NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSS--------------CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCccCchHHHHHHHHHHhCCCC--------------CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 45699999999998887765421 289999999999999999999886 22222 111
Q ss_pred CCCccCCceeEEEecCccccceec----cceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCe
Q 040742 322 NATTKAGLTVAVVKDSVTNDYAFE----AGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSART 396 (581)
Q Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~----~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~ 396 (581)
+... .|.+... .+....+.++|+||| ...+.+ .|+.+|+.+ .+
T Consensus 245 ---------g~~~----~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~---------------~v 292 (758)
T 3pxi_A 245 ---------GTKY----RGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG---------------EL 292 (758)
T ss_dssp ---------------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS---------------SC
T ss_pred ---------cccc----cchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcC---------------CE
Confidence 0000 1211111 011112357899999 333344 455555532 47
Q ss_pred EEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCc
Q 040742 397 SVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTE 476 (581)
Q Consensus 397 ~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 476 (581)
.+|+|+|+.. | ...+.++++|.+||.. +..+.|+.+....|.+++...+...
T Consensus 293 ~~I~at~~~~--~------~~~~~~d~al~rRf~~--i~v~~p~~~~~~~il~~~~~~~~~~------------------ 344 (758)
T 3pxi_A 293 QCIGATTLDE--Y------RKYIEKDAALERRFQP--IQVDQPSVDESIQILQGLRDRYEAH------------------ 344 (758)
T ss_dssp EEEEECCTTT--T------HHHHTTCSHHHHSEEE--EECCCCCHHHHHHHHHHTTTTSGGG------------------
T ss_pred EEEeCCChHH--H------HHHhhccHHHHhhCcE--EEeCCCCHHHHHHHHHHHHHHHHHh------------------
Confidence 7899999863 1 1122389999999954 4457788877777766554432110
Q ss_pred cccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHHHHHHh
Q 040742 477 GLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKFYLKLR 540 (581)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~y~~lR 540 (581)
....++.+.+.....++.+++... +++.+.+++.......+
T Consensus 345 -----------------------~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~ 386 (758)
T 3pxi_A 345 -----------------------HRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVR 386 (758)
T ss_dssp -----------------------SSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHH
T ss_pred -----------------------cCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHH
Confidence 012366777887788887776544 67788888877654443
No 60
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.12 E-value=2.1e-10 Score=116.47 Aligned_cols=146 Identities=21% Similarity=0.218 Sum_probs=88.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC-C-----cEEEecCCCccC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP-R-----GIYVCGNATTKA 327 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~-~-----~~~~~~~~~~~~ 327 (581)
.+++|++.+++.+...+..+.. .|+||+||||||||++++++++.+. . .+.++.......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~--------------~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNI--------------PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCC--------------CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred HHHhCCHHHHHHHHHHHhCCCC--------------CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 4688999998887766554321 2799999999999999999998751 1 122333221111
Q ss_pred CceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC
Q 040742 328 GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG 406 (581)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~ 406 (581)
+.. ++.. ..+. ....+.....++++|||++.++.+.+ .|+..|++ .+..+.+|+++|...
T Consensus 83 ~~~----~~~~-~~~~-~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-------------~~~~~~~i~~~~~~~ 143 (319)
T 2chq_A 83 DVV----RHKI-KEFA-RTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-------------YSKSCRFILSCNYVS 143 (319)
T ss_dssp TTS----SHHH-HHHH-HSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-------------SSSSEEEEEEESCGG
T ss_pred HHH----HHHH-HHHH-hcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-------------cCCCCeEEEEeCChh
Confidence 100 0000 0000 01111123468999999999998776 77777764 234577888888642
Q ss_pred CCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 407 GHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 407 g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
.+.+++.+||. ++.+ ..++.+....+
T Consensus 144 -------------~l~~~l~sr~~-~i~~-~~~~~~~~~~~ 169 (319)
T 2chq_A 144 -------------RIIEPIQSRCA-VFRF-KPVPKEAMKKR 169 (319)
T ss_dssp -------------GSCHHHHTTCE-EEEC-CCCCHHHHHHH
T ss_pred -------------hcchHHHhhCe-EEEe-cCCCHHHHHHH
Confidence 27899999995 3444 34444443333
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.12 E-value=9.6e-11 Score=115.36 Aligned_cols=123 Identities=27% Similarity=0.336 Sum_probs=71.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceecccee-ee---cCceEEEEcCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAM-VL---ADSGLCCIDEFDKM 365 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l-~~---a~~gil~iDEi~~~ 365 (581)
+++|+||||||||+|+++++..+..... +.+...... ..+.....-+.+ .. ....++++||++.+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~----------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l 120 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM----------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 120 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS----------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH----------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhh
Confidence 5999999999999999999998865443 443221000 000000000000 01 12479999999754
Q ss_pred C-----------HHH---H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--c
Q 040742 366 S-----------AEH---Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--R 428 (581)
Q Consensus 366 ~-----------~~~---~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--R 428 (581)
. ... . .++..|+.+. ....+.++|++|.+. .+++++++ |
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~-------------~ld~~l~r~~r 176 (254)
T 1ixz_A 121 GRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPD-------------ILDPALLRPGR 176 (254)
T ss_dssp HC---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGG-------------GSCGGGGSTTS
T ss_pred hcccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCch-------------hCCHHHcCCCc
Confidence 2 111 1 3444444211 123367888888752 18899998 9
Q ss_pred ccEeEEcCCCCCHHHHHHHH
Q 040742 429 FDLVFILLDKPDELLDKRVS 448 (581)
Q Consensus 429 Fdli~~~~d~~~~~~d~~i~ 448 (581)
||..+. .+.|+.+....|.
T Consensus 177 f~~~i~-i~~p~~~~r~~il 195 (254)
T 1ixz_A 177 FDRQIA-IDAPDVKGREQIL 195 (254)
T ss_dssp SCEEEE-CCSCCHHHHHHHH
T ss_pred CCeEEe-eCCcCHHHHHHHH
Confidence 998555 5778877666664
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.09 E-value=2.4e-10 Score=119.17 Aligned_cols=168 Identities=14% Similarity=0.079 Sum_probs=88.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC---------CCcE-EEecCC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS---------PRGI-YVCGNA 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~---------~~~~-~~~~~~ 323 (581)
..++|++.....+...+...... ....+++|+||||||||++++.+++.+ +..+ ++++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~----------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG----------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS----------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 56889999888887666332100 001289999999999999999999876 2222 344332
Q ss_pred CccC-CceeEEEe-----cCccccceec-ccee--eecC---ceEEEEcCCCCCCHH--HH-HHHHHHHccEEEEeeCCe
Q 040742 324 TTKA-GLTVAVVK-----DSVTNDYAFE-AGAM--VLAD---SGLCCIDEFDKMSAE--HQ-ALLEAMEQQCVSVAKAGL 388 (581)
Q Consensus 324 ~~~~-~l~~~~~~-----~~~~~~~~~~-~g~l--~~a~---~gil~iDEi~~~~~~--~~-~L~~~me~~~i~i~k~g~ 388 (581)
.... .+...... .+..+.-.-. ...+ .+.. ..+++|||++.+... .+ .|...++...-
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~------- 161 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE------- 161 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC-------
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh-------
Confidence 1100 00000000 0000000000 0000 0111 348999999998765 44 56555542110
Q ss_pred eEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHH
Q 040742 389 VASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 389 ~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~ 449 (581)
...+.++.+|+++|...-.. .+.+++.+||....+..+.++.+....+..
T Consensus 162 -~~~~~~~~~I~~t~~~~~~~----------~l~~~l~~r~~~~~i~l~~l~~~~~~~il~ 211 (387)
T 2v1u_A 162 -LGDRVWVSLVGITNSLGFVE----------NLEPRVKSSLGEVELVFPPYTAPQLRDILE 211 (387)
T ss_dssp -C-----CEEEEECSCSTTSS----------SSCHHHHTTTTSEECCBCCCCHHHHHHHHH
T ss_pred -cCCCceEEEEEEECCCchHh----------hhCHHHHhcCCCeEEeeCCCCHHHHHHHHH
Confidence 00034678899998752111 178999999976344445555555444433
No 63
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.08 E-value=1.5e-09 Score=136.32 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=95.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE--EecCCCcc-CCceeEEEecCccccceecc--ceeeecC----ceEEEEcC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY--VCGNATTK-AGLTVAVVKDSVTNDYAFEA--GAMVLAD----SGLCCIDE 361 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~--~~~~~~~~-~~l~~~~~~~~~~~~~~~~~--g~l~~a~----~gil~iDE 361 (581)
|+||+||||||||.++......++.... ++-...+. ..+.... +. ..++.... |.+..+. ..|+||||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~--e~-~~e~~~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTF--DH-HCEYKRTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHH--HH-HEEEEECTTSCEEEEESSTTCEEEEEETT
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHH--hh-cceEEeccCCCcccCCCcCCceEEEEecc
Confidence 8999999999999888766555544222 22111111 1111100 00 00111111 4444332 24899999
Q ss_pred CCCCCHH------HH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC--CCCCCCccChhhhcCCChhhhccccEe
Q 040742 362 FDKMSAE------HQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV--GGHYNRAKTVNENLKMSAALLSRFDLV 432 (581)
Q Consensus 362 i~~~~~~------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~--~g~~~~~~~~~~~~~l~~all~RFdli 432 (581)
+|....+ .. .|.++|+.+.+...+.+....+ .++.++||+||+ .|+.+ ++++|++||-++
T Consensus 1383 iNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~gGr~~----------l~~Rf~r~F~vi 1451 (3245)
T 3vkg_A 1383 INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDAGRVQ----------LTHRFLRHAPIL 1451 (3245)
T ss_dssp TTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTSTTCCC----------CCHHHHTTCCEE
T ss_pred cCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCCCCcc----------CCHHHHhhceEE
Confidence 9987754 33 6789999988887655555555 789999999998 47776 999999999653
Q ss_pred EEcCCCCCHHHHHHHHHHHHhhc
Q 040742 433 FILLDKPDELLDKRVSEHIMSLH 455 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~~il~~~ 455 (581)
..+.|+.+....|-..++..+
T Consensus 1452 --~i~~ps~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1452 --LVDFPSTSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp --ECCCCCHHHHHHHHHHHHHHH
T ss_pred --EeCCCCHHHHHHHHHHHHHHH
Confidence 348888888888866665543
No 64
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.08 E-value=2e-09 Score=134.47 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=124.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCC-ccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNAT-TKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE 368 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~ 368 (581)
++++.||||||||.+++++|+.+++.++ ++.... ...++ |.. -.|+ ...|.++|+||||+++++
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~l----------g~~--~~g~--~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVL----------SRL--LVGI--TQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHH----------HHH--HHHH--HHHTCEEEEETTTSSCHH
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHh----------hHH--HHHH--HhcCCEeeehhhhhcChH
Confidence 7899999999999999999999998776 443321 11111 110 1111 123789999999999988
Q ss_pred HH-HH-------HHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC-CCCCCCccChhhhcCCChhhhccccEeEEcCCCC
Q 040742 369 HQ-AL-------LEAMEQQCVSVAKAGLVASLSARTSVLAAANPV-GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP 439 (581)
Q Consensus 369 ~~-~L-------~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~ 439 (581)
.. .+ .++|.++..++...|....++..+.+++|+||. .|+.+ |+++|.+|| . .+..+.|
T Consensus 713 vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~e----------LP~~Lk~~F-r-~v~m~~P 780 (2695)
T 4akg_A 713 VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSE----------LPENLKKSF-R-EFSMKSP 780 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCC----------CCHHHHTTE-E-EEECCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCccc----------ccHHHHhhe-E-EEEeeCC
Confidence 65 44 577777665555568889999999999999997 35554 999999999 4 3344678
Q ss_pred CHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhc
Q 040742 440 DELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTF 519 (581)
Q Consensus 440 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~ 519 (581)
|.+...+| ++. +..
T Consensus 781 d~~~i~ei---~l~--------------------------------------------------------------s~G- 794 (2695)
T 4akg_A 781 QSGTIAEM---ILQ--------------------------------------------------------------IMG- 794 (2695)
T ss_dssp CHHHHHHH---HHH--------------------------------------------------------------HHH-
T ss_pred CHHHHHHH---HHH--------------------------------------------------------------hcC-
Confidence 76554433 111 111
Q ss_pred CCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHh
Q 040742 520 VFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARAR 568 (581)
Q Consensus 520 i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~ 568 (581)
+...+.....+..+|..+|........+..+.|.+.++++.|.+..+
T Consensus 795 --f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lkr 841 (2695)
T 4akg_A 795 --FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLIS 841 (2695)
T ss_dssp --CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred --CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhhc
Confidence 12234555666677777776555444556689999999998765544
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.07 E-value=8.8e-10 Score=125.69 Aligned_cols=226 Identities=14% Similarity=0.167 Sum_probs=124.3
Q ss_pred HHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCC----------C
Q 040742 246 RQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSP----------R 315 (581)
Q Consensus 246 ~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~----------~ 315 (581)
......-...++|++...+.+...|..... .|+||+||||||||++++++++.+. .
T Consensus 178 ~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~--------------~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~ 243 (758)
T 1r6b_X 178 QLARVGGIDPLIGREKELERAIQVLCRRRK--------------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADC 243 (758)
T ss_dssp HHHHTTCSCCCCSCHHHHHHHHHHHTSSSS--------------CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTC
T ss_pred HHHhcCCCCCccCCHHHHHHHHHHHhccCC--------------CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 333333445689999988887776654321 2899999999999999999998752 1
Q ss_pred cEEEecCCCccCCceeEEEecCccccceecc----ceeeecCceEEEEcCCCCCC--------H-HHH-HHHHHHHccEE
Q 040742 316 GIYVCGNATTKAGLTVAVVKDSVTNDYAFEA----GAMVLADSGLCCIDEFDKMS--------A-EHQ-ALLEAMEQQCV 381 (581)
Q Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----g~l~~a~~gil~iDEi~~~~--------~-~~~-~L~~~me~~~i 381 (581)
.++... ...+... ....|.+.... ..+..+.++++||||++.+. . +.. .|..+++.
T Consensus 244 ~~~~~~----~~~l~~~---~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--- 313 (758)
T 1r6b_X 244 TIYSLD----IGSLLAG---TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--- 313 (758)
T ss_dssp EEEECC----CC---CC---CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS---
T ss_pred EEEEEc----HHHHhcc---ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC---
Confidence 222110 0111100 00112211000 01112346899999999882 1 122 22233322
Q ss_pred EEeeCCeeEeeCCCeEEEEeeCCCC--CCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhccCCC
Q 040742 382 SVAKAGLVASLSARTSVLAAANPVG--GHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHSGYQ 459 (581)
Q Consensus 382 ~i~k~g~~~~~~~~~~viaa~Np~~--g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~~~~ 459 (581)
..+.+|+++|+.. +.+ .++++|.+||+. +..+.|+.+....+...+...+....
T Consensus 314 ------------~~~~~I~at~~~~~~~~~----------~~d~aL~~Rf~~--i~v~~p~~~e~~~il~~l~~~~~~~~ 369 (758)
T 1r6b_X 314 ------------GKIRVIGSTTYQEFSNIF----------EKDRALARRFQK--IDITEPSIEETVQIINGLKPKYEAHH 369 (758)
T ss_dssp ------------CCCEEEEEECHHHHHCCC----------CCTTSSGGGEEE--EECCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCeEEEEEeCchHHhhhh----------hcCHHHHhCceE--EEcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3467889988752 222 278999999974 44577887777777666654321100
Q ss_pred CCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCC-cCCHHHHHHHHHHHHH
Q 040742 460 EHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFP-RMTKPAAEILQKFYLK 538 (581)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p-~ls~~a~~~i~~~y~~ 538 (581)
...++.+.+.....++..++.- .+++.+.+++......
T Consensus 370 -----------------------------------------~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~ 408 (758)
T 1r6b_X 370 -----------------------------------------DVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_dssp -----------------------------------------TCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHH
T ss_pred -----------------------------------------CCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHH
Confidence 0124555566666666555433 3567777777665444
Q ss_pred HhhcCCCCCCccccHHHHHHHH
Q 040742 539 LRDHNTSADSTPITARQLESLV 560 (581)
Q Consensus 539 lR~~~~~~~~~~~t~R~lesli 560 (581)
.+..........++...+...+
T Consensus 409 ~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 409 ARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHSSSCCCCCSCCHHHHHHHH
T ss_pred HhcccccccCCccCHHHHHHHH
Confidence 4332111122345665555443
No 66
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.07 E-value=3.4e-10 Score=113.08 Aligned_cols=128 Identities=27% Similarity=0.319 Sum_probs=71.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC---
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS--- 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~--- 366 (581)
+++|+||||||||+|+++++..+...+. +.+....... ... ... .-...++.. ......++++||++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~-~~~-~~~--~i~~~~~~~--~~~~~~i~~iDeid~l~~~~ 148 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF-VGV-GAA--RVRDLFETA--KRHAPCIVFIDEIDAVGRKR 148 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST-TTH-HHH--HHHHHHHHH--HTSCSEEEEEETHHHHHCC-
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH-hhH-HHH--HHHHHHHHH--HhcCCcEEehhhhHhhhccc
Confidence 5999999999999999999999865443 4332210000 000 000 000001100 00124799999997542
Q ss_pred --------HHHH-H---HHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEe
Q 040742 367 --------AEHQ-A---LLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLV 432 (581)
Q Consensus 367 --------~~~~-~---L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli 432 (581)
.... . ++..|+.+ . ....+.++|++|.+.- +++++++ |||..
T Consensus 149 ~~~~~~~~~~~~~~~~~ll~~lsgg--------~---~~~~~i~~a~t~~p~~-------------ld~~l~r~~rf~~~ 204 (278)
T 1iy2_A 149 GSGVGGGNDEREQTLNQLLVEMDGF--------E---KDTAIVVMAATNRPDI-------------LDPALLRPGRFDRQ 204 (278)
T ss_dssp -------CHHHHHHHHHHHHHHTTC--------C---TTCCEEEEEEESCTTS-------------SCHHHHSTTSSCCE
T ss_pred ccccCCcchHHHHHHHHHHHHHhCC--------C---CCCCEEEEEecCCchh-------------CCHhHcCCCcCCeE
Confidence 1112 2 23333221 1 1234678888887621 8899997 99985
Q ss_pred EEcCCCCCHHHHHHHHH
Q 040742 433 FILLDKPDELLDKRVSE 449 (581)
Q Consensus 433 ~~~~d~~~~~~d~~i~~ 449 (581)
+. .+.|+.+....|.+
T Consensus 205 i~-i~~p~~~~r~~il~ 220 (278)
T 1iy2_A 205 IA-IDAPDVKGREQILR 220 (278)
T ss_dssp EE-CCCCCHHHHHHHHH
T ss_pred EE-eCCcCHHHHHHHHH
Confidence 55 56777776666643
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.06 E-value=3.4e-09 Score=102.23 Aligned_cols=146 Identities=21% Similarity=0.214 Sum_probs=85.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCC----------
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNA---------- 323 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~---------- 323 (581)
.+++|++.++..+...+..+... ..++|+||||+|||++++.+++.+..........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~-------------~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIH-------------HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCC-------------SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCC-------------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 56899999999888877655210 1699999999999999999998763311100000
Q ss_pred --CccCCceeEEEecCccccc------eecc-c-eeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEee
Q 040742 324 --TTKAGLTVAVVKDSVTNDY------AFEA-G-AMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASL 392 (581)
Q Consensus 324 --~~~~~l~~~~~~~~~~~~~------~~~~-g-~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~ 392 (581)
....++. ..+...... .+.. . ........+++|||++.+....+ .|+..+++.
T Consensus 90 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~------------- 153 (250)
T 1njg_A 90 EQGRFVDLI---EIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP------------- 153 (250)
T ss_dssp HTTCCSSEE---EEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------
T ss_pred hccCCcceE---EecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------
Confidence 0000111 001000000 0000 0 00112357999999999998766 888888642
Q ss_pred CCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHH
Q 040742 393 SARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELL 443 (581)
Q Consensus 393 ~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~ 443 (581)
+..+.+|+++|... .+.+++++|+ ..+.+ +.++.+.
T Consensus 154 ~~~~~~i~~t~~~~-------------~~~~~l~~r~-~~i~l-~~l~~~e 189 (250)
T 1njg_A 154 PEHVKFLLATTDPQ-------------KLPVTILSRC-LQFHL-KALDVEQ 189 (250)
T ss_dssp CTTEEEEEEESCGG-------------GSCHHHHTTS-EEEEC-CCCCHHH
T ss_pred CCceEEEEEeCChH-------------hCCHHHHHHh-hhccC-CCCCHHH
Confidence 34567788887632 1778999997 33443 3444433
No 68
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.05 E-value=1.8e-10 Score=129.70 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=89.4
Q ss_pred cccccHHHHHHHHHHHhcCccc-ccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 255 SIYGHELVKAGITLALFGGVRK-HSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~-~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
+|.|.+.+|+.+...+.-.... ... .++..+....+||+||||||||.+|+++|..+...++ +.+.. +...
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f--~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~-----l~s~ 550 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKF--LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE-----LLTM 550 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGG--SSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH-----HHTT
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHH--HhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch-----hhcc
Confidence 4568999999887665432111 110 1111222346999999999999999999999987665 33221 1110
Q ss_pred EEecCccccceeccceee---ecCceEEEEcCCCCCCHH--------------HH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 333 VVKDSVTNDYAFEAGAMV---LADSGLCCIDEFDKMSAE--------------HQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~l~---~a~~gil~iDEi~~~~~~--------------~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
.+.+ .+..+. ..+. .....|+||||+|.+-.. .. .|+..|+. . .-..
T Consensus 551 ~vGe---se~~vr-~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg---------~--~~~~ 615 (806)
T 3cf2_A 551 WFGE---SEANVR-EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG---------M--STKK 615 (806)
T ss_dssp TCSS---CHHHHH-HHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHS---------S--CSSS
T ss_pred ccch---HHHHHH-HHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhC---------C--CCCC
Confidence 0000 000000 0011 123689999999987432 11 45566652 1 1134
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHH
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i 447 (581)
++.||||||.+. . |++||++ |||..+. .+.|+.+....|
T Consensus 616 ~V~vi~aTN~p~---~----------lD~AllRpgRfd~~i~-v~lPd~~~R~~i 656 (806)
T 3cf2_A 616 NVFIIGATNRPD---I----------IDPAILRPGRLDQLIY-IPLPDEKSRVAI 656 (806)
T ss_dssp SEEEECC-CCSS---S----------SCHHHHSTTTSCCEEE-C-----CHHHHT
T ss_pred CEEEEEeCCCch---h----------CCHhHcCCCcceEEEE-ECCcCHHHHHHH
Confidence 688999999863 2 9999999 9998665 577888777665
No 69
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.04 E-value=2.7e-10 Score=128.18 Aligned_cols=161 Identities=22% Similarity=0.247 Sum_probs=93.8
Q ss_pred ccccccHHHHHHHHHHHhcC-cccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCcc--CCc
Q 040742 254 PSIYGHELVKAGITLALFGG-VRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTK--AGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g-~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~--~~l 329 (581)
.+|.|.+.+|+.|...+.-. ....... ++..+..-+|||+||||||||+||+++|+.++..++ +++..... .+-
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~--~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFK--AIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGT--SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHh--hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchH
Confidence 45778877776665433210 0001111 111222347999999999999999999999987766 44432110 000
Q ss_pred eeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-----------HH-HHHHHHHccEEEEeeCCeeEeeCCCeE
Q 040742 330 TVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSARTS 397 (581)
Q Consensus 330 ~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~~~~ 397 (581)
+....+ ..| ..+ ......|+||||+|.+.+. .. .|+..|+.- .-..++.
T Consensus 282 se~~lr----~lF-~~A---~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~-----------~~~~~V~ 342 (806)
T 3cf2_A 282 SESNLR----KAF-EEA---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL-----------KQRAHVI 342 (806)
T ss_dssp HHHHHH----HHH-HHH---TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHC-----------CGGGCEE
T ss_pred HHHHHH----HHH-HHH---HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcc-----------cccCCEE
Confidence 000000 000 000 0113689999999987532 11 455555431 1123588
Q ss_pred EEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHH
Q 040742 398 VLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 398 viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~ 449 (581)
||||+|.+.. |+++|++ |||..+. .+.|+.+....|.+
T Consensus 343 VIaaTN~~d~-------------LD~ALrR~GRFd~~I~-i~~Pd~~~R~~IL~ 382 (806)
T 3cf2_A 343 VMAATNRPNS-------------IDPALRRFGRFDREVD-IGIPDATGRLEILQ 382 (806)
T ss_dssp EEEECSSTTT-------------SCTTTTSTTSSCEEEE-CCCCCHHHHHHHHH
T ss_pred EEEecCChhh-------------cCHHHhCCcccceEEe-cCCCCHHHHHHHHH
Confidence 9999998631 8999998 9998655 57888888877743
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=9.3e-10 Score=113.23 Aligned_cols=152 Identities=24% Similarity=0.311 Sum_probs=92.9
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc-----EE-EecCCCcc
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG-----IY-VCGNATTK 326 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~-----~~-~~~~~~~~ 326 (581)
..+++|++.++..+...+..|.. .|+||+||||||||++++++++.+... +. .+... .
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~--------------~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~--~ 87 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKL--------------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD--D 87 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCC--------------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS--C
T ss_pred HHHhcCcHHHHHHHHHHHhcCCC--------------ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc--c
Confidence 35688999999998888877631 179999999999999999999886321 11 11111 0
Q ss_pred CCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCC
Q 040742 327 AGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPV 405 (581)
Q Consensus 327 ~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~ 405 (581)
.+. ...++. -+.+ ...+....+...+++|||++.++.+.+ +|+..||+. +..+.++.++|..
T Consensus 88 ~~~--~~ir~~-i~~~-~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~ 150 (340)
T 1sxj_C 88 RGI--DVVRNQ-IKDF-ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYA 150 (340)
T ss_dssp CSH--HHHHTH-HHHH-HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCG
T ss_pred ccH--HHHHHH-HHHH-HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCc
Confidence 000 000000 0000 001111223467999999999998877 899999862 2345566777764
Q ss_pred CCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 406 GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 406 ~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
. .+.+++.+|+. ++.+...+ .+.......+++
T Consensus 151 ~-------------~i~~~i~sR~~-~~~~~~l~-~~~~~~~l~~~~ 182 (340)
T 1sxj_C 151 H-------------KLTPALLSQCT-RFRFQPLP-QEAIERRIANVL 182 (340)
T ss_dssp G-------------GSCHHHHTTSE-EEECCCCC-HHHHHHHHHHHH
T ss_pred c-------------ccchhHHhhce-eEeccCCC-HHHHHHHHHHHH
Confidence 2 27899999995 45544444 444344444444
No 71
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.03 E-value=4e-09 Score=102.11 Aligned_cols=174 Identities=16% Similarity=0.166 Sum_probs=101.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---c-EEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---G-IYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+||||||||++++.+++.+.. . +++....... .+ ... + -.+...++++|||++.+.
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~-~~---------~~~--~----~~~~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS-IS---------TAL--L----EGLEQFDLICIDDVDAVA 117 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG-SC---------GGG--G----TTGGGSSEEEEETGGGGT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH-HH---------HHH--H----HhccCCCEEEEecccccc
Confidence 8999999999999999999987632 2 2233221100 00 000 0 012346899999999987
Q ss_pred HHH--H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCCCCH
Q 040742 367 AEH--Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDKPDE 441 (581)
Q Consensus 367 ~~~--~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~~~~ 441 (581)
... + .|+..++... -.....+|.++|.....+. .+.+++.+||+ .++.+ +.++.
T Consensus 118 ~~~~~~~~l~~~l~~~~-----------~~~~~~ii~~~~~~~~~~~---------~~~~~l~~r~~~~~~i~l-~~~~~ 176 (242)
T 3bos_A 118 GHPLWEEAIFDLYNRVA-----------EQKRGSLIVSASASPMEAG---------FVLPDLVSRMHWGLTYQL-QPMMD 176 (242)
T ss_dssp TCHHHHHHHHHHHHHHH-----------HHCSCEEEEEESSCTTTTT---------CCCHHHHHHHHHSEEEEC-CCCCG
T ss_pred CCHHHHHHHHHHHHHHH-----------HcCCCeEEEEcCCCHHHHH---------HhhhhhhhHhhcCceEEe-CCCCH
Confidence 543 4 6777765421 0112335555664322222 15589999995 55554 44444
Q ss_pred HHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 040742 442 LLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVF 521 (581)
Q Consensus 442 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~ 521 (581)
+....+. ++++. +. .
T Consensus 177 ~~~~~~l-------------------------------------------------------------~~~~~--~~--~ 191 (242)
T 3bos_A 177 DEKLAAL-------------------------------------------------------------QRRAA--MR--G 191 (242)
T ss_dssp GGHHHHH-------------------------------------------------------------HHHHH--HT--T
T ss_pred HHHHHHH-------------------------------------------------------------HHHHH--Hc--C
Confidence 4433332 22221 11 2
Q ss_pred CcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 522 PRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 522 p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
..+++++.+.+..++ +-++|.+..+++.+.+.|.... ..|+.+|+
T Consensus 192 ~~~~~~~~~~l~~~~-------------~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v 236 (242)
T 3bos_A 192 LQLPEDVGRFLLNRM-------------ARDLRTLFDVLDRLDKASMVHQ-RKLTIPFV 236 (242)
T ss_dssp CCCCHHHHHHHHHHT-------------TTCHHHHHHHHHHHHHHHHHHT-CCCCHHHH
T ss_pred CCCCHHHHHHHHHHc-------------cCCHHHHHHHHHHHHHHHHHhC-CCCcHHHH
Confidence 257777777776532 2378999999998888876554 45888775
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.00 E-value=1.6e-09 Score=125.05 Aligned_cols=211 Identities=15% Similarity=0.215 Sum_probs=120.0
Q ss_pred chHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC--------
Q 040742 242 SDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS-------- 313 (581)
Q Consensus 242 ~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~-------- 313 (581)
.++-......-...++|++...+.+...|..+.. -|+||+||||||||++++.+++.+
T Consensus 158 ~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~--------------~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~ 223 (854)
T 1qvr_A 158 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTK--------------NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEG 223 (854)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSC--------------CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTT
T ss_pred HhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCC--------------CceEEEcCCCCCHHHHHHHHHHHHhcCCCchh
Confidence 3455555555556689999988888877765421 279999999999999999999876
Q ss_pred --CCcEE-EecCCCccCCceeEEEecCccccceecccee----ee-cCceEEEEcCCCCCCH--------HHH-HHHHHH
Q 040742 314 --PRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAM----VL-ADSGLCCIDEFDKMSA--------EHQ-ALLEAM 376 (581)
Q Consensus 314 --~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l----~~-a~~gil~iDEi~~~~~--------~~~-~L~~~m 376 (581)
...++ +... .+.+... ..|.+...-..+ .. ....|+||||++.+.. +.. .|..++
T Consensus 224 l~~~~~~~l~~~-----~l~~g~~---~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l 295 (854)
T 1qvr_A 224 LKGKRIVSLQMG-----SLLAGAK---YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL 295 (854)
T ss_dssp STTCEEEEECC-------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH
T ss_pred hcCCeEEEeehH-----HhhccCc---cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH
Confidence 22232 2211 1111000 011111000000 00 1246999999999862 222 355556
Q ss_pred HccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHHhhcc
Q 040742 377 EQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIMSLHS 456 (581)
Q Consensus 377 e~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il~~~~ 456 (581)
+.+ .+.+|+|+|+... .. +.++++|.+||+.+. .+.|+.+....+.+.++..+.
T Consensus 296 ~~~---------------~i~~I~at~~~~~--------~~-~~~d~aL~rRf~~i~--l~~p~~~e~~~iL~~~~~~~~ 349 (854)
T 1qvr_A 296 ARG---------------ELRLIGATTLDEY--------RE-IEKDPALERRFQPVY--VDEPTVEETISILRGLKEKYE 349 (854)
T ss_dssp HTT---------------CCCEEEEECHHHH--------HH-HTTCTTTCSCCCCEE--ECCCCHHHHHHHHHHHHHHHH
T ss_pred hCC---------------CeEEEEecCchHH--------hh-hccCHHHHhCCceEE--eCCCCHHHHHHHHHhhhhhhh
Confidence 543 3557888886420 01 237899999998633 467787777777777665432
Q ss_pred CCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHhcCCCc-CCHHHHHHHHHH
Q 040742 457 GYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYARTFVFPR-MTKPAAEILQKF 535 (581)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~~i~p~-ls~~a~~~i~~~ 535 (581)
..+ ...++.+.+...+.++..++... +++.+.+++...
T Consensus 350 ~~~-----------------------------------------~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea 388 (854)
T 1qvr_A 350 VHH-----------------------------------------GVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA 388 (854)
T ss_dssp HHT-----------------------------------------TCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred hhc-----------------------------------------CCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHH
Confidence 110 11345666777777887776654 567788888776
Q ss_pred HHHHhh
Q 040742 536 YLKLRD 541 (581)
Q Consensus 536 y~~lR~ 541 (581)
....|-
T Consensus 389 ~a~~~~ 394 (854)
T 1qvr_A 389 AARLRM 394 (854)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 655553
No 73
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.96 E-value=1.9e-10 Score=114.43 Aligned_cols=123 Identities=13% Similarity=0.178 Sum_probs=69.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCC---
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKM--- 365 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~--- 365 (581)
.++||+||||||||++|+++++.++..+. +.... .+.+...... .+..............++++|||++.+
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~----~~~g~~~~~~-~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 139 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD----KMIGFSETAK-CQAMKKIFDDAYKSQLSCVVVDDIERLLDY 139 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG----GCTTCCHHHH-HHHHHHHHHHHHTSSEEEEEECCHHHHTTC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH----HhcCCchHHH-HHHHHHHHHHHHhcCCcEEEEEChhhhhcc
Confidence 38999999999999999999998766543 33211 1110000000 000000000001134689999999886
Q ss_pred -------CHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCCh-hhhccccEeEEcC
Q 040742 366 -------SAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSA-ALLSRFDLVFILL 436 (581)
Q Consensus 366 -------~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~-all~RFdli~~~~ 436 (581)
..... .|.+.++. ....+.++.+|+|+|.... +++ .+.+||+..+.++
T Consensus 140 ~~~~~~~~~~~l~~L~~~~~~----------~~~~~~~~~ii~ttn~~~~-------------l~~~~l~~rf~~~i~~p 196 (272)
T 1d2n_A 140 VPIGPRFSNLVLQALLVLLKK----------APPQGRKLLIIGTTSRKDV-------------LQEMEMLNAFSTTIHVP 196 (272)
T ss_dssp BTTTTBCCHHHHHHHHHHTTC----------CCSTTCEEEEEEEESCHHH-------------HHHTTCTTTSSEEEECC
T ss_pred CCCChhHHHHHHHHHHHHhcC----------ccCCCCCEEEEEecCChhh-------------cchhhhhcccceEEcCC
Confidence 22222 34444331 1112345779999998520 334 6789998888776
Q ss_pred CCCC
Q 040742 437 DKPD 440 (581)
Q Consensus 437 d~~~ 440 (581)
+..+
T Consensus 197 ~l~~ 200 (272)
T 1d2n_A 197 NIAT 200 (272)
T ss_dssp CEEE
T ss_pred CccH
Confidence 5554
No 74
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.95 E-value=1.6e-09 Score=112.93 Aligned_cols=163 Identities=15% Similarity=0.083 Sum_probs=86.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC-----------CCcE-EEec
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS-----------PRGI-YVCG 321 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~-----------~~~~-~~~~ 321 (581)
.+++|++.....+...+....... ...+++|+||||||||++++.+++.+ +..+ +++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~----------~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~ 89 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNE----------VKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC 89 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTC----------CCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC----------CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence 668999988887765543311000 00279999999999999999999875 3322 2442
Q ss_pred CCCc--cCCceeEEEec------Ccccc---ceecc-ceeeecCceEEEEcCCCCCCHHH-H-H-HHHHHHccEEEEeeC
Q 040742 322 NATT--KAGLTVAVVKD------SVTND---YAFEA-GAMVLADSGLCCIDEFDKMSAEH-Q-A-LLEAMEQQCVSVAKA 386 (581)
Q Consensus 322 ~~~~--~~~l~~~~~~~------~~~~~---~~~~~-g~l~~a~~gil~iDEi~~~~~~~-~-~-L~~~me~~~i~i~k~ 386 (581)
.... ...+....... ...+. -.+.. .......+.+++|||++.+.... + . +...++..
T Consensus 90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~------- 162 (384)
T 2qby_B 90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD------- 162 (384)
T ss_dssp HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-------
T ss_pred ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-------
Confidence 2111 00000000000 00000 00000 00011123399999999886542 3 4 44444321
Q ss_pred CeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHH
Q 040742 387 GLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHI 451 (581)
Q Consensus 387 g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~i 451 (581)
.++.+|+|+|...... .+.+++++||+..+.+ +.++.+....+..+.
T Consensus 163 -------~~~~iI~~t~~~~~~~----------~l~~~l~sr~~~~i~l-~~l~~~~~~~il~~~ 209 (384)
T 2qby_B 163 -------ANISVIMISNDINVRD----------YMEPRVLSSLGPSVIF-KPYDAEQLKFILSKY 209 (384)
T ss_dssp -------SCEEEEEECSSTTTTT----------TSCHHHHHTCCCEEEE-CCCCHHHHHHHHHHH
T ss_pred -------cceEEEEEECCCchHh----------hhCHHHHhcCCCeEEE-CCCCHHHHHHHHHHH
Confidence 4678899998752111 1789999999765554 444555544444333
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.94 E-value=1.8e-08 Score=104.52 Aligned_cols=154 Identities=21% Similarity=0.184 Sum_probs=88.5
Q ss_pred CccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEecCC---------
Q 040742 253 CPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNA--------- 323 (581)
Q Consensus 253 ~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~--------- 323 (581)
..+++|++.+++.+...+..+... ..+||+||||||||++++++++.+..........
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~~~~-------------~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLGRIH-------------HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHTCCC-------------SEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhCCCC-------------eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 356899999999888877665310 1479999999999999999998764311100000
Q ss_pred ---CccCCceeEEEecCccc--cc--eec-cce-eeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 324 ---TTKAGLTVAVVKDSVTN--DY--AFE-AGA-MVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 324 ---~~~~~l~~~~~~~~~~~--~~--~~~-~g~-l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
....++.. .......+ .. ... ... -......+++|||++.++...+ .|+..+++ .+
T Consensus 82 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-------------~~ 147 (373)
T 1jr3_A 82 IEQGRFVDLIE-IDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-------------PP 147 (373)
T ss_dssp HHTSCCSSCEE-EETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-------------CC
T ss_pred HhccCCCceEE-ecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-------------CC
Confidence 00001110 00000000 00 000 000 0122357999999999998776 88888875 13
Q ss_pred CCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHH
Q 040742 394 ARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVS 448 (581)
Q Consensus 394 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~ 448 (581)
..+.+|.++|... .+.+++.+|+ ..+.+ ..++.+....+.
T Consensus 148 ~~~~~Il~~~~~~-------------~l~~~l~sr~-~~i~~-~~l~~~~~~~~l 187 (373)
T 1jr3_A 148 EHVKFLLATTDPQ-------------KLPVTILSRC-LQFHL-KALDVEQIRHQL 187 (373)
T ss_dssp SSEEEEEEESCGG-------------GSCHHHHTTS-EEEEC-CCCCHHHHHHHH
T ss_pred CceEEEEEeCChH-------------hCcHHHHhhe-eEeeC-CCCCHHHHHHHH
Confidence 4566777776432 1778999998 44443 444444444443
No 76
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.93 E-value=1.1e-09 Score=116.56 Aligned_cols=182 Identities=19% Similarity=0.259 Sum_probs=102.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC-----CCc-EEEecCCCccCCceeEEEecCccccceeccceeeec-CceEEEEcCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS-----PRG-IYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLA-DSGLCCIDEFD 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~-----~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a-~~gil~iDEi~ 363 (581)
+++|+||||+|||+||+++++.+ ... ++++..... ..+.... . .+.. ..-.-... ...+++|||++
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~-~~~~~~~-~---~~~~--~~~~~~~~~~~~vL~IDEi~ 204 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL-NDLVDSM-K---EGKL--NEFREKYRKKVDILLIDDVQ 204 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH-HHHHHHH-H---TTCH--HHHHHHHTTTCSEEEEECGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH-HHHHHHH-H---cccH--HHHHHHhcCCCCEEEEeCcc
Confidence 89999999999999999999876 222 233322110 0000000 0 0000 00000112 46799999999
Q ss_pred CCCH--HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCC
Q 040742 364 KMSA--EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDK 438 (581)
Q Consensus 364 ~~~~--~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~ 438 (581)
.+.. ..+ .|+..++... . .....|+++.|+... +. .+.++|++||+ .++. ...
T Consensus 205 ~l~~~~~~q~~l~~~l~~l~----~-------~~~~iIitt~~~~~~-l~---------~l~~~L~sR~~~g~~i~-l~~ 262 (440)
T 2z4s_A 205 FLIGKTGVQTELFHTFNELH----D-------SGKQIVICSDREPQK-LS---------EFQDRLVSRFQMGLVAK-LEP 262 (440)
T ss_dssp GGSSCHHHHHHHHHHHHHHH----T-------TTCEEEEEESSCGGG-CS---------SCCHHHHHHHHSSBCCB-CCC
T ss_pred cccCChHHHHHHHHHHHHHH----H-------CCCeEEEEECCCHHH-HH---------HHHHHHHhhccCCeEEE-eCC
Confidence 9875 445 6777765321 0 112344555554321 11 27899999996 4443 355
Q ss_pred CCHHHHHHHHHHHHhhccCCCCCcccccCcccccCCCccccccccccchhhhhccCCCCCCCCCCCCHHHHHHHHHHHHh
Q 040742 439 PDELLDKRVSEHIMSLHSGYQEHSSAAKKPRTAYHNTEGLDLSVKSGSLVSKLRLDPKKDGDFHPLPAPLLRKYIAYART 518 (581)
Q Consensus 439 ~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lk~yi~~ar~ 518 (581)
|+.+....+. ++.+.. .
T Consensus 263 p~~e~r~~iL-------------------------------------------------------------~~~~~~--~ 279 (440)
T 2z4s_A 263 PDEETRKSIA-------------------------------------------------------------RKMLEI--E 279 (440)
T ss_dssp CCHHHHHHHH-------------------------------------------------------------HHHHHH--H
T ss_pred CCHHHHHHHH-------------------------------------------------------------HHHHHH--c
Confidence 6655544442 222211 1
Q ss_pred cCCCcCCHHHHHHHHHHHHHHhhcCCCCCCccccHHHHHHHHHHHHHHHhccCCCCCCcccc
Q 040742 519 FVFPRMTKPAAEILQKFYLKLRDHNTSADSTPITARQLESLVRLAEARARLDLREEITAEDA 580 (581)
Q Consensus 519 ~i~p~ls~~a~~~i~~~y~~lR~~~~~~~~~~~t~R~leslirla~a~A~l~~~~~V~~~Dv 580 (581)
...+++++.+.|.... +-++|.++.+++.+.+.|...++ .|+.+++
T Consensus 280 --~~~i~~e~l~~la~~~-------------~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~ 325 (440)
T 2z4s_A 280 --HGELPEEVLNFVAENV-------------DDNLRRLRGAIIKLLVYKETTGK-EVDLKEA 325 (440)
T ss_dssp --TCCCCTTHHHHHHHHC-------------CSCHHHHHHHHHHHHHHHHHSSS-CCCHHHH
T ss_pred --CCCCCHHHHHHHHHhc-------------CCCHHHHHHHHHHHHHHHHHhCC-CCCHHHH
Confidence 1246777777666421 23799999999999988887665 4776654
No 77
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=6.2e-09 Score=105.65 Aligned_cols=151 Identities=23% Similarity=0.247 Sum_probs=90.4
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC------cEEEecCCCccC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR------GIYVCGNATTKA 327 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~------~~~~~~~~~~~~ 327 (581)
.+++|++.+++.+...+..+.. .|+||+||||+|||++++.+++.+.. .+++++... .
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~--------------~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~ 84 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNM--------------PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD--R 84 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCC--------------CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC--C
T ss_pred HHHHCCHHHHHHHHHHHHcCCC--------------CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc--c
Confidence 4688999999988877766521 17999999999999999999987521 112322211 0
Q ss_pred CceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC
Q 040742 328 GLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG 406 (581)
Q Consensus 328 ~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~ 406 (581)
+. ...++.. ..+......+......+++|||++.+....+ .|+..+++. +..+.+|.++|...
T Consensus 85 ~~--~~i~~~~-~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 85 GI--DVVRNQI-KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSN 148 (323)
T ss_dssp SH--HHHHTHH-HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG
T ss_pred Ch--HHHHHHH-HHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChh
Confidence 00 0000000 0000000011012367999999999998776 888888752 24466777777632
Q ss_pred CCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHH
Q 040742 407 GHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHI 451 (581)
Q Consensus 407 g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~i 451 (581)
.+.+++.+|+. ++.+ ..++.+....+....
T Consensus 149 -------------~l~~~l~sr~~-~i~~-~~~~~~~~~~~l~~~ 178 (323)
T 1sxj_B 149 -------------KIIEPLQSQCA-ILRY-SKLSDEDVLKRLLQI 178 (323)
T ss_dssp -------------GSCHHHHTTSE-EEEC-CCCCHHHHHHHHHHH
T ss_pred -------------hchhHHHhhce-EEee-cCCCHHHHHHHHHHH
Confidence 27899999995 3443 445554444443333
No 78
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.91 E-value=2.9e-09 Score=108.73 Aligned_cols=132 Identities=18% Similarity=0.283 Sum_probs=72.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcE-EEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGI-YVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
+++|+||||||||+|++++++.+ ...+ +++..... ..+.... .......+ . -...+.+++||||++.+.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~-~~~~~~~-~~~~~~~~--~---~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA-QAMVEHL-KKGTINEF--R---NMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH-HHHHHHH-HHTCHHHH--H---HHHHTCSEEEEECGGGGT
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH-HHHHHHH-HcCcHHHH--H---HHhcCCCEEEEcCccccc
Confidence 79999999999999999999876 3333 34322110 0000000 00000000 0 011246899999999988
Q ss_pred H--HHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhcccc--EeEEcCCCCCH
Q 040742 367 A--EHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFD--LVFILLDKPDE 441 (581)
Q Consensus 367 ~--~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFd--li~~~~d~~~~ 441 (581)
. ..+ .++..++... . .....|++++|+..... .++++|++||+ +++.+++ +.
T Consensus 112 ~~~~~~~~l~~~l~~~~----~-------~~~~iii~~~~~~~~l~----------~l~~~L~sR~~~~~~i~l~~--~~ 168 (324)
T 1l8q_A 112 GKERTQIEFFHIFNTLY----L-------LEKQIILASDRHPQKLD----------GVSDRLVSRFEGGILVEIEL--DN 168 (324)
T ss_dssp TCHHHHHHHHHHHHHHH----H-------TTCEEEEEESSCGGGCT----------TSCHHHHHHHHTSEEEECCC--CH
T ss_pred CChHHHHHHHHHHHHHH----H-------CCCeEEEEecCChHHHH----------HhhhHhhhcccCceEEEeCC--CH
Confidence 5 444 6666654310 0 11134555555542111 28899999997 5555555 55
Q ss_pred HHHHHHHHHHH
Q 040742 442 LLDKRVSEHIM 452 (581)
Q Consensus 442 ~~d~~i~~~il 452 (581)
+....+..+.+
T Consensus 169 ~e~~~il~~~~ 179 (324)
T 1l8q_A 169 KTRFKIIKEKL 179 (324)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544433
No 79
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.88 E-value=2.9e-09 Score=106.01 Aligned_cols=162 Identities=19% Similarity=0.205 Sum_probs=92.4
Q ss_pred ccccccHHHHHHHHHHHhcC--cccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCce
Q 040742 254 PSIYGHELVKAGITLALFGG--VRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g--~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~ 330 (581)
.+|.|.+.+|+.+...+... ..... ..-.+.... +++|+||||||||+|+++++..++...+ +.|.......
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l-~~~~l~~~~--GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~-- 84 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQF-KALGLVTPA--GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY-- 84 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHH-HHTTCCCCS--EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST--
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHH-HHcCCCCCC--eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh--
Confidence 45778888887775543211 00000 000111111 5999999999999999999999876543 5554331110
Q ss_pred eEEEecCccccceeccceee----ecCceEEEEcCCCCCCHH-----------HH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 331 VAVVKDSVTNDYAFEAGAMV----LADSGLCCIDEFDKMSAE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l~----~a~~gil~iDEi~~~~~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
.+.....-+.+. .....++++||++.+... .. .++..|..+. ...
T Consensus 85 --------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~ 145 (274)
T 2x8a_A 85 --------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQ 145 (274)
T ss_dssp --------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----------STT
T ss_pred --------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----------ccC
Confidence 010000000111 112579999999986421 11 3344444321 123
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHHh
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIMS 453 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il~ 453 (581)
.+.++|++|.+.- +++++++ |||..+. .+.|+.+....|.+.++.
T Consensus 146 ~~i~ia~tn~p~~-------------LD~al~r~gRfd~~i~-~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDI-------------IDPAILRPGRLDKTLF-VGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGG-------------SCHHHHSTTSSCEEEE-CCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhh-------------CCHhhcCcccCCeEEE-eCCcCHHHHHHHHHHHHh
Confidence 4678899997631 8999998 9998555 688999888888666553
No 80
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.88 E-value=1.7e-09 Score=100.49 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=43.8
Q ss_pred HHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 244 IFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 244 ~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+-..+...-...++|++...+.+...+..+.. .+++|+||||||||++++++++.+
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~--------------~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 12 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTK--------------NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS--------------CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccchHHHHHHHHHHhcCCC--------------CceEEECCCCCCHHHHHHHHHHHH
Confidence 44445555667799999988888877765321 289999999999999999999875
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.83 E-value=3.8e-10 Score=104.70 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=42.5
Q ss_pred HHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 245 FRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 245 ~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+.+...-...++|++...+.+...+..+.. .++||+||||||||++++++++.+
T Consensus 13 ~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~--------------~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 13 TALARAGKLDPVIGRDTEIRRAIQILSRRTK--------------NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS--------------CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHhccccchhhcchHHHHHHHHHHhCCCC--------------CceEEECCCCCCHHHHHHHHHHHH
Confidence 3344455557799999988888777765321 289999999999999999999876
No 82
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.82 E-value=1.2e-08 Score=103.22 Aligned_cols=144 Identities=10% Similarity=-0.014 Sum_probs=77.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC-----------CcEEEecCCCccCC---------ceeE-EEecCccc--cceeccc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP-----------RGIYVCGNATTKAG---------LTVA-VVKDSVTN--DYAFEAG 347 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~-----------~~~~~~~~~~~~~~---------l~~~-~~~~~~~~--~~~~~~g 347 (581)
+++|+||||||||++++++++.+. ..+++++....... +.+. ........ ...+...
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~ 126 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV 126 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 899999999999999999998772 12346654432110 0000 00000000 0000000
Q ss_pred eeeecCceEEEEcCCCCCCHHHHHHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc
Q 040742 348 AMVLADSGLCCIDEFDKMSAEHQALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS 427 (581)
Q Consensus 348 ~l~~a~~gil~iDEi~~~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~ 427 (581)
.-......|++|||+|.+. +...|+..++-.. .-..++.+|+.+|...-.+ ..+++++.|
T Consensus 127 ~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~----------~~~s~~~vI~i~n~~d~~~---------~~L~~~v~S 186 (318)
T 3te6_A 127 PKAKKRKTLILIQNPENLL-SEKILQYFEKWIS----------SKNSKLSIICVGGHNVTIR---------EQINIMPSL 186 (318)
T ss_dssp CGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHH----------CSSCCEEEEEECCSSCCCH---------HHHHTCHHH
T ss_pred hhccCCceEEEEecHHHhh-cchHHHHHHhccc----------ccCCcEEEEEEecCcccch---------hhcchhhhc
Confidence 0001124689999999998 2225555443100 1134688999999753100 015567789
Q ss_pred cccEeEEcCCCCCHHHHHHHHHHHHhh
Q 040742 428 RFDLVFILLDKPDELLDKRVSEHIMSL 454 (581)
Q Consensus 428 RFdli~~~~d~~~~~~d~~i~~~il~~ 454 (581)
||+...+.+...+.++...|.++-+..
T Consensus 187 R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 187 KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 998544445666666666666665553
No 83
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.81 E-value=2.1e-08 Score=104.50 Aligned_cols=167 Identities=9% Similarity=0.041 Sum_probs=86.9
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCc-----EEEecCCCcc-C
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRG-----IYVCGNATTK-A 327 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~-----~~~~~~~~~~-~ 327 (581)
+.++|++...+.+...+......... . ..+++|+||||||||++++.+++.+... +++++..... .
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~---~-----~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGH---H-----YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTS---S-----CCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCC---C-----CCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 56889998888776666542110000 0 0169999999999999999999887432 2344322110 0
Q ss_pred CceeEEEec-----Ccccc-ce--e-ccceeeec--CceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 328 GLTVAVVKD-----SVTND-YA--F-EAGAMVLA--DSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 328 ~l~~~~~~~-----~~~~~-~~--~-~~g~l~~a--~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
.+....... +..+. .. . .......+ ...+++|||++.++.+.+ .|+.++++.. + ....+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~------~---~~~~~ 159 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD------K---LGAFR 159 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH------H---HSSCC
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC------C---CCcCC
Confidence 000000000 00000 00 0 00000011 134899999999987766 7777775421 0 00135
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
+.+|+++|... +.. .+.+++.+||....+..+.++.+....+
T Consensus 160 ~~iI~~~~~~~--------~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~ 201 (389)
T 1fnn_A 160 IALVIVGHNDA--------VLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDI 201 (389)
T ss_dssp EEEEEEESSTH--------HHH--TSCHHHHHHHTTCEEECCCCBHHHHHHH
T ss_pred EEEEEEECCch--------HHH--HhCHHhhhcCCCceEEeCCCCHHHHHHH
Confidence 77888888641 001 2778899999752233344444433333
No 84
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=5.4e-08 Score=100.28 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=86.1
Q ss_pred ccccccHHHHHHHHHHH-hcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHH-HCCC---cEEEecCCCccC-
Q 040742 254 PSIYGHELVKAGITLAL-FGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAA-VSPR---GIYVCGNATTKA- 327 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l-~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~-~~~~---~~~~~~~~~~~~- 327 (581)
.+++|++.+++.+...+ ..+. . .|++|+||||+|||++++.+++ +.+. .+.+.+......
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-------------~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~ 79 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-------------L-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS 79 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-------------C-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-------------C-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc
Confidence 45889999988777665 3321 0 2799999999999999999999 4432 122211110000
Q ss_pred ------Cce---eEEEecCc-cccc---ee--------cccee--------eecCceEEEEcCCCCCCHHHH-HHHHHHH
Q 040742 328 ------GLT---VAVVKDSV-TNDY---AF--------EAGAM--------VLADSGLCCIDEFDKMSAEHQ-ALLEAME 377 (581)
Q Consensus 328 ------~l~---~~~~~~~~-~~~~---~~--------~~g~l--------~~a~~gil~iDEi~~~~~~~~-~L~~~me 377 (581)
+.. ........ .+.. .. ....+ ...+..+++|||++.++...+ .|+..|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 80 NRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp ------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred cccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 000 00000000 0000 00 00000 022456999999999998877 8999887
Q ss_pred ccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 378 QQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 378 ~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
+- +.++.+|.++|... .+.+++.+|+ ..+.+ ..++.+....+..++.
T Consensus 160 ~~-------------~~~~~~Il~t~~~~-------------~l~~~l~sR~-~~~~~-~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 160 KY-------------SKNIRLIMVCDSMS-------------PIIAPIKSQC-LLIRC-PAPSDSEISTILSDVV 206 (354)
T ss_dssp HS-------------TTTEEEEEEESCSC-------------SSCHHHHTTS-EEEEC-CCCCHHHHHHHHHHHH
T ss_pred hh-------------cCCCEEEEEeCCHH-------------HHHHHHHhhc-eEEec-CCcCHHHHHHHHHHHH
Confidence 52 23456666666542 1778999999 54554 4555555444444443
No 85
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.70 E-value=5.1e-08 Score=101.25 Aligned_cols=50 Identities=16% Similarity=0.109 Sum_probs=36.8
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..++|++...+.+...+....... ...+++|+||||||||+|++.+++.+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~----------~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREE----------KPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTC----------CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC----------CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 568899888887776555321000 01279999999999999999999876
No 86
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=1.3e-07 Score=102.65 Aligned_cols=125 Identities=17% Similarity=0.101 Sum_probs=65.2
Q ss_pred ccccccHHHHHHHHHHHhcCcccc---cCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCc
Q 040742 254 PSIYGHELVKAGITLALFGGVRKH---SMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGL 329 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~---~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l 329 (581)
.+++|++.+++.+...+....... ......-.....-++||+||||||||++|+++++.++..+. ++........+
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 468999999888877665421100 00000000001138999999999999999999999876554 44332211100
Q ss_pred eeEEEecC-----ccccceec-cceeeecCceEEEEcCCCCCCHHH----HHHHHHHHc
Q 040742 330 TVAVVKDS-----VTNDYAFE-AGAMVLADSGLCCIDEFDKMSAEH----QALLEAMEQ 378 (581)
Q Consensus 330 ~~~~~~~~-----~~~~~~~~-~g~l~~a~~gil~iDEi~~~~~~~----~~L~~~me~ 378 (581)
........ ..+.+... ........+.+++|||++.+.... ..|+..++.
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 00000000 00000000 000112346799999999997542 356666664
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.61 E-value=5.9e-10 Score=127.24 Aligned_cols=160 Identities=21% Similarity=0.204 Sum_probs=89.6
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeE
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVA 332 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~ 332 (581)
.++.|.+.+|+.+...+.-..... ....++..+..-++||+||||||||+||++++..+...++ +.+... ...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~-~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l-----~~~ 550 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHP-DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL-----LTM 550 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSC-TTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS-----TTC
T ss_pred cccccchhhhhhHHHHHHhhhhch-HHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh-----hhh
Confidence 357788889988876554321110 0111122233348999999999999999999999865443 333221 100
Q ss_pred EEecCccccceeccce-ee---ecCceEEEEcCCCCCCHH--------------HH-HHHHHHHccEEEEeeCCeeEeeC
Q 040742 333 VVKDSVTNDYAFEAGA-MV---LADSGLCCIDEFDKMSAE--------------HQ-ALLEAMEQQCVSVAKAGLVASLS 393 (581)
Q Consensus 333 ~~~~~~~~~~~~~~g~-l~---~a~~gil~iDEi~~~~~~--------------~~-~L~~~me~~~i~i~k~g~~~~~~ 393 (581)
.. |......+. +. ....+|+||||++.+... .. .|+..|+.. .-.
T Consensus 551 ~~-----g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~-----------~~~ 614 (806)
T 1ypw_A 551 WF-----GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM-----------STK 614 (806)
T ss_dssp CT-----TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC----------------
T ss_pred hc-----CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc-----------ccc
Confidence 00 110000000 00 112469999999875310 11 333333321 112
Q ss_pred CCeEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHH
Q 040742 394 ARTSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSE 449 (581)
Q Consensus 394 ~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~ 449 (581)
.++.||+|+|.+. . +++++++ |||.++. .+.|+.+....|.+
T Consensus 615 ~~v~vI~tTN~~~---~----------ld~allrpgRf~~~i~-~~~p~~~~r~~Il~ 658 (806)
T 1ypw_A 615 KNVFIIGATNRPD---I----------IDPAILRPGRLDQLIY-IPLPDEKSRVAILK 658 (806)
T ss_dssp -CCBCCCCCBSCG---G----------GSCTTSSGGGTTSCCC-CCCCCCSHHHHHTT
T ss_pred CCeEEEEecCCcc---c----------CCHHHhCccccCceee-cCCCCHHHHHHHHH
Confidence 4688999999863 1 8899999 9986544 46677766666633
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=2.2e-07 Score=93.75 Aligned_cols=139 Identities=10% Similarity=0.105 Sum_probs=80.1
Q ss_pred ccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHC------CCcEE-EecCCCccCCce
Q 040742 258 GHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVS------PRGIY-VCGNATTKAGLT 330 (581)
Q Consensus 258 G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~------~~~~~-~~~~~~~~~~l~ 330 (581)
||+++.+.+...+-.|. . .++||+||||+|||++++++++.+ ...+. +.+... ...
T Consensus 1 g~~~~~~~L~~~i~~~~-~-------------~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-G-------------ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTCS-S-------------EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CBC
T ss_pred ChHHHHHHHHHHHHCCC-C-------------cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CCC
Confidence 67777777777777653 1 289999999999999999999852 11221 221110 000
Q ss_pred eEEEecCccccceecccee-eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCC
Q 040742 331 VAVVKDSVTNDYAFEAGAM-VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGH 408 (581)
Q Consensus 331 ~~~~~~~~~~~~~~~~g~l-~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~ 408 (581)
...++ ...-..... ..+...|++|||++.|+...+ +|+..||+. +..+.+|.++|.+.
T Consensus 64 id~ir-----~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~~-- 123 (305)
T 2gno_A 64 IDDIR-----TIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRWH-- 123 (305)
T ss_dssp HHHHH-----HHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCGG--
T ss_pred HHHHH-----HHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECChH--
Confidence 00000 000000000 123467999999999998877 999999862 23344444444321
Q ss_pred CCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHHHH
Q 040742 409 YNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDKRV 447 (581)
Q Consensus 409 ~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~~i 447 (581)
++.+++.|| ++.+...++++....+
T Consensus 124 -----------kl~~tI~SR---~~~f~~l~~~~i~~~L 148 (305)
T 2gno_A 124 -----------YLLPTIKSR---VFRVVVNVPKEFRDLV 148 (305)
T ss_dssp -----------GSCHHHHTT---SEEEECCCCHHHHHHH
T ss_pred -----------hChHHHHce---eEeCCCCCHHHHHHHH
Confidence 288999999 4555555555444433
No 89
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.57 E-value=6.3e-07 Score=112.97 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=86.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEH 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~ 369 (581)
...+.||+|||||.+++.+|+.+++.++ ++.... +..... |. +-.|.. ..|.++|+||||+++.+.
T Consensus 606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~----~d~~~~-----g~--i~~G~~--~~GaW~cfDEfNrl~~~v 672 (3245)
T 3vkg_A 606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEG----FDLQAM-----SR--IFVGLC--QCGAWGCFDEFNRLEERI 672 (3245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSC----CCHHHH-----HH--HHHHHH--HHTCEEEEETTTSSCHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCC----CCHHHH-----HH--HHhhHh--hcCcEEEehhhhcCCHHH
Confidence 4678899999999999999999999876 333211 110000 11 112322 247899999999999886
Q ss_pred H-HHHHH-------HHccEEEEeeC-CeeEeeCCCeEEEEeeCCC-CCCCCCccChhhhcCCChhhhccccEeEEcCCCC
Q 040742 370 Q-ALLEA-------MEQQCVSVAKA-GLVASLSARTSVLAAANPV-GGHYNRAKTVNENLKMSAALLSRFDLVFILLDKP 439 (581)
Q Consensus 370 ~-~L~~~-------me~~~i~i~k~-g~~~~~~~~~~viaa~Np~-~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~ 439 (581)
. .+.+. +.++.-.+.-. |....++..+.+++|+||. .|+.. |+++|.+|| .. +-...|
T Consensus 673 LSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~e----------LP~nLk~lF-r~-v~m~~P 740 (3245)
T 3vkg_A 673 LSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSN----------LPDNLKKLF-RS-MAMIKP 740 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCC----------SCHHHHTTE-EE-EECCSC
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCccc----------ChHHHHhhc-EE-EEEeCC
Confidence 5 44443 33333333333 6778899999999999997 35544 999999999 43 334677
Q ss_pred CHHHHHHH
Q 040742 440 DELLDKRV 447 (581)
Q Consensus 440 ~~~~d~~i 447 (581)
|.+...+|
T Consensus 741 d~~~i~ei 748 (3245)
T 3vkg_A 741 DREMIAQV 748 (3245)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 76554433
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.50 E-value=9.3e-08 Score=109.13 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=93.7
Q ss_pred ccccccHHHHHHHHHHHhcCc-ccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEE-EecCCCccCCcee
Q 040742 254 PSIYGHELVKAGITLALFGGV-RKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIY-VCGNATTKAGLTV 331 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~-~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~-~~~~~~~~~~l~~ 331 (581)
.+|.|++.+++.+...+.... ..... ..+.+...-++||+||||||||+||++++..++..++ +++......
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~--~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~---- 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALF--KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK---- 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGG--TSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHH--HhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh----
Confidence 458888877777655443200 00000 0111222348999999999999999999999876654 444221100
Q ss_pred EEEecCccccceecccee----eecCceEEEEcCCCCCCHH-----------HH-HHHHHHHccEEEEeeCCeeEeeCCC
Q 040742 332 AVVKDSVTNDYAFEAGAM----VLADSGLCCIDEFDKMSAE-----------HQ-ALLEAMEQQCVSVAKAGLVASLSAR 395 (581)
Q Consensus 332 ~~~~~~~~~~~~~~~g~l----~~a~~gil~iDEi~~~~~~-----------~~-~L~~~me~~~i~i~k~g~~~~~~~~ 395 (581)
..+...-.-+.+ .....+++||||++.+... .. .|+..|+... ....
T Consensus 278 ------~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~ 340 (806)
T 1ypw_A 278 ------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAH 340 (806)
T ss_dssp ------STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSC
T ss_pred ------hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----------cccc
Confidence 001110000000 1123579999999766421 22 5666665321 1246
Q ss_pred eEEEEeeCCCCCCCCCccChhhhcCCChhhhc--cccEeEEcCCCCCHHHHHHHHHHHH
Q 040742 396 TSVLAAANPVGGHYNRAKTVNENLKMSAALLS--RFDLVFILLDKPDELLDKRVSEHIM 452 (581)
Q Consensus 396 ~~viaa~Np~~g~~~~~~~~~~~~~l~~all~--RFdli~~~~d~~~~~~d~~i~~~il 452 (581)
+.+++|+|+... +++++.+ ||+..+ ....|+.+....+...+.
T Consensus 341 v~vI~atn~~~~-------------ld~al~r~gRf~~~i-~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 341 VIVMAATNRPNS-------------IDPALRRFGRFDREV-DIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CEEEEECSCTTT-------------SCTTTTSTTSSCEEE-CCCCCCHHHHHHHHHHTT
T ss_pred EEEecccCCchh-------------cCHHHhccccccccc-ccCCCCHHHHHHHHHHHH
Confidence 789999998631 7778877 998644 456777777777655443
No 91
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.46 E-value=6.7e-07 Score=91.53 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEE----ecCC--------Ccc
Q 040742 259 HELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYV----CGNA--------TTK 326 (581)
Q Consensus 259 ~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~----~~~~--------~~~ 326 (581)
++.+.+.+..++..|... -.+||+||||+|||++|+++++.+...... +|.- .+.
T Consensus 7 ~~~~~~~l~~~i~~~~~~-------------~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~ 73 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGH-------------HALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTH 73 (334)
T ss_dssp GHHHHHHHHHHHHTTCCC-------------SEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHcCCcc-------------eeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 566677777777665311 139999999999999999999876421100 0000 000
Q ss_pred CCceeEEEecCc--cccce-------e-cccee-eecCceEEEEcCCCCCCHHHH-HHHHHHHccEEEEeeCCeeEeeCC
Q 040742 327 AGLTVAVVKDSV--TNDYA-------F-EAGAM-VLADSGLCCIDEFDKMSAEHQ-ALLEAMEQQCVSVAKAGLVASLSA 394 (581)
Q Consensus 327 ~~l~~~~~~~~~--~~~~~-------~-~~g~l-~~a~~gil~iDEi~~~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~ 394 (581)
.++. ..++. ..... . ..... ......|++|||+++|+.+.+ +|+..||+. +.
T Consensus 74 ~d~~---~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-------------~~ 137 (334)
T 1a5t_A 74 PDYY---TLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-------------PA 137 (334)
T ss_dssp TTEE---EECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CT
T ss_pred CCEE---EEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CC
Confidence 1111 01110 00000 0 00000 123457999999999998877 899999852 33
Q ss_pred CeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcCCCCCHHHHH
Q 040742 395 RTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILLDKPDELLDK 445 (581)
Q Consensus 395 ~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~d~~~~~~d~ 445 (581)
.+.+|.++|... ++.+++.||+. ++.+ ..++++...
T Consensus 138 ~~~~Il~t~~~~-------------~l~~ti~SRc~-~~~~-~~~~~~~~~ 173 (334)
T 1a5t_A 138 ETWFFLATREPE-------------RLLATLRSRCR-LHYL-APPPEQYAV 173 (334)
T ss_dssp TEEEEEEESCGG-------------GSCHHHHTTSE-EEEC-CCCCHHHHH
T ss_pred CeEEEEEeCChH-------------hCcHHHhhcce-eeeC-CCCCHHHHH
Confidence 455666666431 28899999994 4554 445544433
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.41 E-value=3.8e-07 Score=81.92 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=61.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC----cEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR----GIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMS 366 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~ 366 (581)
.++|+||+|+|||+|+++++..+.. .+++.+...... ....+..+++|||++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------------GGGGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------------HHHhCCCEEEEeCccccC
Confidence 7999999999999999999987631 233443322110 012245799999999988
Q ss_pred HHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccE
Q 040742 367 AEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDL 431 (581)
Q Consensus 367 ~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdl 431 (581)
...+ .|++.++... ..| ...+|.|+|.....|. .+ +.|.|||..
T Consensus 97 ~~~~~~l~~li~~~~----~~g-------~~~iiits~~~p~~l~---------~~-~~L~SRl~~ 141 (149)
T 2kjq_A 97 NEEQALLFSIFNRFR----NSG-------KGFLLLGSEYTPQQLV---------IR-EDLRTRMAY 141 (149)
T ss_dssp SHHHHHHHHHHHHHH----HHT-------CCEEEEEESSCTTTSS---------CC-HHHHHHGGG
T ss_pred hHHHHHHHHHHHHHH----HcC-------CcEEEEECCCCHHHcc---------cc-HHHHHHHhc
Confidence 6545 7777775321 001 1224456664333333 14 899999843
No 93
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.14 E-value=2.4e-06 Score=79.93 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=63.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHH-H
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAE-H 369 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~-~ 369 (581)
++|++||||||||++|.++++.+...+. .-.. . ...+.+. .+.+..+++|||++...-+ .
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~-~fan------------s--~s~f~l~----~l~~~kIiiLDEad~~~~~~~ 120 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVI-SFVN------------S--TSHFWLE----PLTDTKVAMLDDATTTCWTYF 120 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEEC-CCCC------------S--SSCGGGG----GGTTCSSEEEEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee-eEEe------------c--cchhhhc----ccCCCCEEEEECCCchhHHHH
Confidence 7999999999999999999998754321 0000 0 0011111 1223458999999854322 2
Q ss_pred H-HHHHHHHccEEEEeeCCee-EeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEcC
Q 040742 370 Q-ALLEAMEQQCVSVAKAGLV-ASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFILL 436 (581)
Q Consensus 370 ~-~L~~~me~~~i~i~k~g~~-~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~~ 436 (581)
+ .+..+|+...+.+.+-... ...+ ...+|.|+|-....-. .-+.|.||+ ..|-++
T Consensus 121 d~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~~~~~~----------~~~~L~SRi-~~f~F~ 177 (212)
T 1tue_A 121 DTYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIHPAKDN----------RWPYLESRI-TVFEFP 177 (212)
T ss_dssp HHHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSCTTSSS----------SCHHHHTSC-EEEECC
T ss_pred HHHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCCccccc----------chhhhhhhE-EEEEcC
Confidence 2 5667777666655321111 1111 2357788886421111 236899999 445544
No 94
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.05 E-value=0.0001 Score=72.06 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=62.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCCCCHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDKMSAEHQ 370 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~~~~~~~ 370 (581)
+++|+||||||||.++.++++.++..-.++. +. ..+.+.+ ..+.-+++.||.........
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l~G~vn~---~~-------------~~f~l~~----~~~k~i~l~Ee~~~~~d~~~ 165 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPFYGCVNW---TN-------------ENFPFND----CVDKMVIWWEEGKMTAKVVE 165 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEECCT---TC-------------SSCTTGG----GSSCSEEEECSCCEETTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcccceeec---cc-------------ccccccc----ccccEEEEeccccchhHHHH
Confidence 7999999999999999999997643111110 00 1111111 12345667777765554334
Q ss_pred HHHHHHHccEEEEeeCCe-eEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChhhhccccEeEEc
Q 040742 371 ALLEAMEQQCVSVAKAGL-VASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLVFIL 435 (581)
Q Consensus 371 ~L~~~me~~~i~i~k~g~-~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~all~RFdli~~~ 435 (581)
.+..+++-..+.+..... .... .+..+|.|+|-.-..+-..... .-...++|.||. .+|-+
T Consensus 166 ~lr~i~~G~~~~id~K~k~~~~v-~~tPvIitsN~~i~~~~~g~~~--s~~~~~~L~sR~-~~f~F 227 (267)
T 1u0j_A 166 SAKAILGGSKVRVDQKCKSSAQI-DPTPVIVTSNTNMCAVIDGNST--TFEHQQPLQDRM-FKFEL 227 (267)
T ss_dssp HHHHHHTTCCEEC------CCEE-CCCCEEEEESSCTTCEEETTEE--ECTTHHHHHTTE-EEEEC
T ss_pred HHHHHhCCCcEEEecCcCCcccc-cCCCEEEEecCCcccccccCcc--chhhhHHHhhhE-EEEEC
Confidence 777777766665542111 1111 3455777788531110000000 002457899998 54544
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.88 E-value=2.7e-05 Score=81.41 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=34.4
Q ss_pred ccccccHHHHHHHHHHH-h---cCcccccCCCCCccccCceeeEE--eCCCCChHHHHHHHHHHHC
Q 040742 254 PSIYGHELVKAGITLAL-F---GGVRKHSMYQNKVPVRGDIHVIV--VGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l-~---~g~~~~~~~~~~~~~rg~~~iLL--~G~pGtGKT~la~~la~~~ 313 (581)
+.++|.+.....+...+ . .+.. ....++++ +|+||+|||+|++.+++.+
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~-----------~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAG-----------LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSC-----------BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCC-----------CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 56889887766665555 2 2200 00127888 9999999999999999775
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.82 E-value=1.9e-06 Score=79.70 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=52.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC-----CcEEEecCCCccCCceeEEEecCccccceeccceeeecCceEEEEcCCCC-
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP-----RGIYVCGNATTKAGLTVAVVKDSVTNDYAFEAGAMVLADSGLCCIDEFDK- 364 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~l~~a~~gil~iDEi~~- 364 (581)
+++|+||||+|||+|+++++..+. ..++++.... ..........+.. ..-.-.+.+..+++|||++.
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL-----IFRLKHLMDEGKD--TKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH-----HHHHHHHHHHTCC--SHHHHHHHTCSEEEEETCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH-----HHHHHHHhcCchH--HHHHHHhcCCCEEEEeCCCCC
Confidence 799999999999999999998763 1122221110 0000000000000 00001123568999999984
Q ss_pred -CCHHHH-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCC
Q 040742 365 -MSAEHQ-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVG 406 (581)
Q Consensus 365 -~~~~~~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~ 406 (581)
+++..+ .|++.++... ..+..+|.|+|...
T Consensus 113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYSL 144 (180)
T ss_dssp CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCCS
T ss_pred cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCCh
Confidence 455554 6667665321 12356778888754
No 97
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.43 E-value=0.00028 Score=66.22 Aligned_cols=120 Identities=12% Similarity=0.128 Sum_probs=64.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC--------C-CcEEEec-CCCccCCceeEEEec----Cccccceecccee----eec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS--------P-RGIYVCG-NATTKAGLTVAVVKD----SVTNDYAFEAGAM----VLA 352 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~--------~-~~~~~~~-~~~~~~~l~~~~~~~----~~~~~~~~~~g~l----~~a 352 (581)
..|+.|+||+|||+++...+... + +.+++++ .+.. .+........ ....+- ..+..+ ..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~-~~~~~~~~~k~~~~~~~~~~-~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLK-IPHTYIETDAKKLPKSTDEQ-LSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBC-SCCEEEECCTTTCSSCCSSC-EEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCcc-ccccccchhhhhccccCccc-ccHHHHHHHhhcc
Confidence 68899999999999998864432 2 5566444 2221 1221100000 000000 000000 013
Q ss_pred C--ceEEEEcCCCCCC--H-HH--H-HHHHHHHccEEEEeeCCeeEeeCCCeEEEEeeCCCCCCCCCccChhhhcCCChh
Q 040742 353 D--SGLCCIDEFDKMS--A-EH--Q-ALLEAMEQQCVSVAKAGLVASLSARTSVLAAANPVGGHYNRAKTVNENLKMSAA 424 (581)
Q Consensus 353 ~--~gil~iDEi~~~~--~-~~--~-~L~~~me~~~i~i~k~g~~~~~~~~~~viaa~Np~~g~~~~~~~~~~~~~l~~a 424 (581)
. +.+++|||++.+. . +. . .++..++..+ ...+.+|.++++.. .|+.+
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~~-------------~l~~~ 139 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGPK-------------LLDQN 139 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCGG-------------GBCHH
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCHH-------------HHhHH
Confidence 3 7899999999872 1 11 1 4455554321 22355666667631 18889
Q ss_pred hhccccEeEEcCC
Q 040742 425 LLSRFDLVFILLD 437 (581)
Q Consensus 425 ll~RFdli~~~~d 437 (581)
+.+|++..+.+..
T Consensus 140 lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 140 LRTLVRKHYHIAS 152 (199)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHhheEEEEcC
Confidence 9999998887655
No 98
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.45 E-value=0.0069 Score=55.83 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=16.9
Q ss_pred eeEEeCCCCChHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~ 311 (581)
-.+++|+||+|||+++..++.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999855543
No 99
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.37 E-value=0.0014 Score=61.11 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+++|+||||||||+|+++++..+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999876
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.24 E-value=0.007 Score=64.31 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
++++.|+||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 89999999999999999988765
No 101
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.10 E-value=0.0038 Score=56.75 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=24.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.|+|+|+||+|||++++.+++.++..++
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~ 32 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWL 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 6899999999999999999999875543
No 102
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.01 E-value=0.0027 Score=63.81 Aligned_cols=24 Identities=42% Similarity=0.508 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
+++|+||||||||+||.+++..+.
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999997654
No 103
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.96 E-value=0.0049 Score=55.73 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+|+||+|||++++.++..++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999998764
No 104
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.95 E-value=0.0044 Score=57.73 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++|+|+||+|||++++.+++.++..+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 799999999999999999998875443
No 105
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.93 E-value=0.0043 Score=56.85 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=24.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
+|+|+|+||+|||++++.+++.++..+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l~~~~ 33 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLTKRIL 33 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 799999999999999999999876544
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.84 E-value=0.018 Score=58.42 Aligned_cols=75 Identities=13% Similarity=0.045 Sum_probs=45.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC----cEE-EecCCCccCCceeEEEecCccccce--eccceeeecCceEEEEcCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR----GIY-VCGNATTKAGLTVAVVKDSVTNDYA--FEAGAMVLADSGLCCIDEFD 363 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~----~~~-~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~l~~a~~gil~iDEi~ 363 (581)
..||+||+|+||++.++.+++.+.. ... +.-.. ..+. .... ....++ .++..|++|||.+
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~----------~~l~~~~~~~pl-f~~~kvvii~~~~ 86 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--NTDW----------NAIFSLCQAMSL-FASRQTLLLLLPE 86 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--TCCH----------HHHHHHHHHHHH-CCSCEEEEEECCS
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--CCCH----------HHHHHHhcCcCC-ccCCeEEEEECCC
Confidence 6899999999999999999875421 111 11000 0000 0000 001111 2456799999999
Q ss_pred C-CCHHHH-HHHHHHHc
Q 040742 364 K-MSAEHQ-ALLEAMEQ 378 (581)
Q Consensus 364 ~-~~~~~~-~L~~~me~ 378 (581)
. ++.+.+ +|+..+|+
T Consensus 87 ~kl~~~~~~aLl~~le~ 103 (343)
T 1jr3_D 87 NGPNAAINEQLLTLTGL 103 (343)
T ss_dssp SCCCTTHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHhc
Confidence 9 887766 89998875
No 107
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.72 E-value=0.007 Score=55.66 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=26.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~~ 322 (581)
.+.|+|++|+|||++++.++......+++.+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d 35 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGD 35 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEEEEHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEEEccc
Confidence 57899999999999999999866555666553
No 108
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.71 E-value=0.0062 Score=54.86 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
+++|.|.||+|||++++.+++.++..++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 8999999999999999999998765443
No 109
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.71 E-value=0.0056 Score=55.62 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
+++|+|+||+|||++++.+++.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 69999999999999999999987643
No 110
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.65 E-value=0.011 Score=64.44 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+++.|+||||||+++..++..+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998754
No 111
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.61 E-value=0.013 Score=59.05 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHhhcC----chHHHHHHHhhCccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCC
Q 040742 223 FSFSPRDLEFIVKFSEESG----SDIFRQIVQSICPSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDP 298 (581)
Q Consensus 223 ~~~~~~~~~~i~~~~~~~~----~~~~~~l~~s~~p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~p 298 (581)
..+|++|++.+..+....+ .++|.-|++.+.-. +|.......+...+.++... ....-+.|.|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~~~-~~~~~~l~~~~~~~l~~~~~----------~~p~iigI~Gps 101 (321)
T 3tqc_A 33 LTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLSFY-VTARQTLQQATYQFLGKPEP----------KVPYIIGIAGSV 101 (321)
T ss_dssp CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHHHH-HHHHHHHHHHHHHHHTCCCC----------CCCEEEEEECCT
T ss_pred CCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHhccCCC----------CCCEEEEEECCC
Confidence 5689999888866653211 34555555554443 45555555666666655211 112468999999
Q ss_pred CChHHHHHHHHHHHCC
Q 040742 299 GLGKSQLLQAAAAVSP 314 (581)
Q Consensus 299 GtGKT~la~~la~~~~ 314 (581)
|+|||++++.++.++.
T Consensus 102 GSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 102 AVGKSTTSRVLKALLS 117 (321)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998864
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.61 E-value=0.0065 Score=54.63 Aligned_cols=26 Identities=15% Similarity=-0.017 Sum_probs=22.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.|+|.|+||+|||++++.+++.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 58999999999999999999887543
No 113
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.60 E-value=0.017 Score=58.29 Aligned_cols=51 Identities=25% Similarity=0.291 Sum_probs=39.5
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
+.++|.+.....+...+..|. .++++|++|+|||+|++.+++..+ .++++.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~~----------------~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~~~ 62 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENYP----------------LTLLLGIRRVGKSSLLRAFLNERP-GILIDC 62 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHCS----------------EEEEECCTTSSHHHHHHHHHHHSS-EEEEEH
T ss_pred HhcCChHHHHHHHHHHHhcCC----------------eEEEECCCcCCHHHHHHHHHHHcC-cEEEEe
Confidence 457898887777766665431 799999999999999999998875 555543
No 114
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.46 E-value=0.0078 Score=54.88 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
+|+|+|+||+|||++++.+++.++..+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 799999999999999999998876544
No 115
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.41 E-value=0.025 Score=56.05 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=25.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC-cEEEec
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR-GIYVCG 321 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~-~~~~~~ 321 (581)
..++|.|+||+|||++++.+++.++. .+++++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 36999999999999999999988753 334543
No 116
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.40 E-value=0.0085 Score=54.90 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
++.|+||+|+|||+|++.++..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 117
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.39 E-value=0.0078 Score=54.57 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.|+|+|+||+|||++++.+++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 5899999999999999999983
No 118
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.38 E-value=0.011 Score=55.62 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=23.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
+|+|.|+||+|||++++.+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 28 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPH 28 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 589999999999999999998876544
No 119
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.34 E-value=0.0091 Score=54.56 Aligned_cols=27 Identities=33% Similarity=0.490 Sum_probs=23.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+|+|+||+|||++++.+++.++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 30 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGL 30 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 589999999999999999999776443
No 120
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.33 E-value=0.0095 Score=53.43 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+||.|+|||+|++.++..+|
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 588999999999999999999884
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.32 E-value=0.011 Score=53.05 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+|+|+||+|||++++.+ +.++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~ 28 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKV 28 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcE
Confidence 6899999999999999999 6665443
No 122
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.29 E-value=0.011 Score=55.13 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=24.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
.+.|+|++|+|||++++.++..++ .+++.+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g-~~~i~~ 60 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETG-LEFAEA 60 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC-CEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC-CeEEcc
Confidence 689999999999999999998773 344444
No 123
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.28 E-value=0.022 Score=55.12 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=26.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCc-EEEecC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRG-IYVCGN 322 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~-~~~~~~ 322 (581)
..++|+|+||+|||++++.+++.++.. +++++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D 66 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGD 66 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecH
Confidence 379999999999999999999988643 344543
No 124
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.25 E-value=0.013 Score=54.32 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=24.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
-+.|+||+|+|||+|++.++...+ .+.+.+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~ 38 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKALA-EIKISI 38 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSS-SEEECC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC-CeEEec
Confidence 588999999999999999999976 444443
No 125
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.23 E-value=0.011 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=22.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH-CC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV-SP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~-~~ 314 (581)
.+++|+|+||+|||++++.+++. ++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 37999999999999999999998 44
No 126
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.16 E-value=0.011 Score=53.19 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=23.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.|+|.|+||+|||++++.+++.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 59999999999999999999977643
No 127
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.13 E-value=0.011 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|+|+||+|||++++.+++.++.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999988753
No 128
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.12 E-value=0.01 Score=54.03 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=20.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.|+|.|+||+|||++++.+++.++..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 6999999999999999999998876543
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.11 E-value=0.01 Score=54.44 Aligned_cols=25 Identities=40% Similarity=0.454 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|+|+||+|||++++.+++.++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 6999999999999999999987653
No 130
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.08 E-value=0.012 Score=53.31 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=24.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
.++|+|+||+|||++++.++..++ .+++.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g-~~~i~~ 39 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLH-AAFLDG 39 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHT-CEEEEG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhC-cEEEeC
Confidence 689999999999999999998764 334443
No 131
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.08 E-value=0.012 Score=53.64 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.++|+|+||+|||++++.+++.++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~ 30 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGF 30 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999987653
No 132
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.07 E-value=0.013 Score=55.11 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+|.|+||+|||++++.+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~ 28 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPH 28 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 589999999999999999988765443
No 133
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.06 E-value=0.012 Score=57.11 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=23.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++++|+||+|||+|++.+++.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~ 29 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPV 29 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeE
Confidence 488999999999999999998876443
No 134
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.05 E-value=0.013 Score=54.53 Aligned_cols=28 Identities=25% Similarity=0.325 Sum_probs=24.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
..|+|+|+||+|||++++.+++.++..+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~ 48 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQ 48 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 3699999999999999999998765443
No 135
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.04 E-value=0.013 Score=53.52 Aligned_cols=25 Identities=16% Similarity=0.509 Sum_probs=22.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++...+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~~ 31 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHPD 31 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 5899999999999999999998763
No 136
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.04 E-value=0.014 Score=56.58 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=24.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.+.|+|++|+|||++++.+++.++..+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~ 76 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTF 76 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcE
Confidence 799999999999999999999876544
No 137
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.01 E-value=0.014 Score=52.27 Aligned_cols=27 Identities=15% Similarity=0.054 Sum_probs=23.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+|.|+||+|||++++.+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 589999999999999999999765443
No 138
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.97 E-value=0.012 Score=54.07 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|+||+|||++++.++....
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~ 34 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPG 34 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 689999999999999999998743
No 139
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.93 E-value=0.019 Score=52.94 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=24.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.|+|+||+|+|||+|++.+.+..|..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 6999999999999999999988876554
No 140
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.90 E-value=0.016 Score=54.74 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=23.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
..|+|+|+||+|||++++.+++.++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 379999999999999999999987643
No 141
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.89 E-value=0.015 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.570 Sum_probs=22.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.++|+|+||+|||++++.+++.++.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCcc
Confidence 6899999999999999999998864
No 142
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.87 E-value=0.014 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|+||||+||+|.++.+++.++-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999998754
No 143
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.86 E-value=0.015 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|+|+||+|||++++.+++.++.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999987654
No 144
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.82 E-value=0.014 Score=53.74 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=23.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.|+|+|+||+|||++++.+++.++..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~ 37 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTH 37 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 699999999999999999998776443
No 145
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.80 E-value=0.039 Score=56.34 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++++||+|+|||+++++++...+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 799999999999999999988764
No 146
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.77 E-value=0.011 Score=54.12 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.|+|.|+||+|||++++.+++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 147
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.73 E-value=0.015 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.|+|.|+||+|||++++.+++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999998764
No 148
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.72 E-value=0.018 Score=53.33 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|.|.|+||+|||++++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5899999999999999999998764
No 149
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.69 E-value=0.018 Score=54.63 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=23.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.|+|+|+||+|||++++.+++.++..
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 69999999999999999999887543
No 150
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.69 E-value=0.015 Score=53.56 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|+|+||+|||++++.+++.++.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~~ 38 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYGF 38 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999998764
No 151
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.59 E-value=0.019 Score=54.75 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
..|+|+|+||+|||++++.+++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 379999999999999999999887643
No 152
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.59 E-value=0.017 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|+|+||+|||++++.+++.++.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~~ 32 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999987654
No 153
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.57 E-value=0.015 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.|+|++|+|||++++.++..+
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999886
No 154
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.55 E-value=0.016 Score=53.98 Aligned_cols=25 Identities=20% Similarity=0.061 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|.|+||+|||++++.+++.++.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 6899999999999999999987653
No 155
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.52 E-value=0.03 Score=52.92 Aligned_cols=29 Identities=24% Similarity=0.519 Sum_probs=24.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYV 319 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~ 319 (581)
.+.|+||+|+|||+|++.++...|..+++
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 58899999999999999999988634544
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.50 E-value=0.018 Score=53.90 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||++++.++...+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCC
Confidence 5889999999999999999998864
No 157
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.50 E-value=0.019 Score=53.91 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=23.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
+|+|.|+||+|||++++.+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~ 28 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQ 28 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 589999999999999999998765433
No 158
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.48 E-value=0.019 Score=54.26 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.+.|+|++|+|||++++.+++.++..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 69999999999999999999876543
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.48 E-value=0.025 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
..|+|+|+||+|||++++.+++.++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36899999999999999999988764
No 160
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.44 E-value=0.02 Score=54.00 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=24.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
..|+|+|+||+|||++++.+++.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~ 33 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAH 33 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceE
Confidence 3799999999999999999999875433
No 161
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.38 E-value=0.018 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|+||+|||++++.+++.++
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999997654
No 162
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.35 E-value=0.019 Score=54.35 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-|+|+||||+||+|.++.+++.++-
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5788999999999999999988753
No 163
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.33 E-value=0.017 Score=54.64 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|+|+||+|||++++.+++.++.
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6999999999999999999988763
No 164
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.30 E-value=0.023 Score=54.72 Aligned_cols=28 Identities=21% Similarity=0.140 Sum_probs=23.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
..|+|.|+||+|||++++.+++.++...
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~ 57 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCH 57 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 3799999999999999999998765433
No 165
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.27 E-value=0.023 Score=52.15 Aligned_cols=25 Identities=36% Similarity=0.565 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++...+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 4789999999999999999999864
No 166
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.21 E-value=0.026 Score=53.44 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|+|.|+||+|||++++.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~ 26 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL 26 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987754
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.19 E-value=0.025 Score=52.41 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.|+|++|+|||++++.++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68999999999999999999987
No 168
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.18 E-value=0.036 Score=52.24 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+.|+||+|+|||+|++.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999754
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.11 E-value=0.039 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.630 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.+++..+.
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCCc
Confidence 5889999999999999999998874
No 170
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.10 E-value=0.037 Score=52.52 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=18.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-++++|+||+|||+++..++..+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 47889999999999777766544
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.02 E-value=0.033 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|.|+|++|+|||++++.+++ ++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 589999999999999999999 643
No 172
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.00 E-value=0.037 Score=53.79 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.|+|+|+||+|||++++.+++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999987
No 173
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.95 E-value=0.026 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCc
Confidence 689999999999999999998875
No 174
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.93 E-value=0.043 Score=55.33 Aligned_cols=51 Identities=18% Similarity=0.130 Sum_probs=37.1
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHHCCC-cEEEecC
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAVSPR-GIYVCGN 322 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~~~~-~~~~~~~ 322 (581)
+.++|.+.....+.. +..+ .++++|++|+|||+|++.+++.+.. .++++..
T Consensus 13 ~~~~gR~~el~~L~~-l~~~-----------------~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRAP-----------------ITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCSS-----------------EEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred HHhcChHHHHHHHHH-hcCC-----------------cEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 457888877766665 3221 7999999999999999999887543 3455543
No 175
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.93 E-value=0.029 Score=52.41 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=21.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..|+|+|+||+|||++++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999999865
No 176
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.91 E-value=0.032 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+||+|+|||+|++.++.+.+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999986
No 177
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.87 E-value=0.038 Score=50.72 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-|.|.|++|+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999886
No 178
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.86 E-value=0.039 Score=56.01 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+++|+|+||+|||++++.+++.++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 7999999999999999999988754
No 179
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.83 E-value=0.04 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+|++|+|||++++.++. ++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 588999999999999999998 443
No 180
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.82 E-value=0.027 Score=51.50 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..++|+|+||+|||++++.++..+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998763
No 181
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.81 E-value=0.035 Score=50.82 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=21.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.|.|.|+||+|||++++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999876
No 182
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.75 E-value=0.033 Score=51.58 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.|.|.|+||+|||++++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999987
No 183
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.72 E-value=0.035 Score=53.10 Aligned_cols=28 Identities=29% Similarity=0.287 Sum_probs=24.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
..+.+.||||+|||++++.+++.++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 4799999999999999999998876433
No 184
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.71 E-value=0.041 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+..
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhhhcC
Confidence 689999999999999999999873
No 185
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.71 E-value=0.033 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.392 Sum_probs=20.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+||+|+|||+|++.++.+
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999987
No 186
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.69 E-value=0.038 Score=52.37 Aligned_cols=25 Identities=40% Similarity=0.480 Sum_probs=22.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++...+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred EEEEECCCCCCHHHHHHHHhccCCC
Confidence 5889999999999999999999863
No 187
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.64 E-value=0.041 Score=53.22 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=25.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~~~ 321 (581)
.+.|+|++|+|||++++.+++.++-..+.+|
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 6899999999999999999988865444333
No 188
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=93.63 E-value=0.044 Score=56.35 Aligned_cols=27 Identities=19% Similarity=0.113 Sum_probs=23.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++|+||||+|||+|++.++......+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~ 197 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKA 197 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcE
Confidence 799999999999999999998764433
No 189
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.56 E-value=0.067 Score=51.07 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=18.8
Q ss_pred eeEEeCCCCChHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la 310 (581)
-+.|+||+|+|||+|++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58899999999999999988
No 190
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.55 E-value=0.033 Score=57.04 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.++++||+|+|||+|++.++...+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7999999999999999999998763
No 191
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.53 E-value=0.039 Score=52.30 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=23.1
Q ss_pred cCceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 287 RGDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 287 rg~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
||.+++++.|+||+|||+++-.++..+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 567899999999999999987777554
No 192
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.52 E-value=0.047 Score=52.71 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=23.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
..|.|.|+||+|||++++.+++.++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 46999999999999999999997764
No 193
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.48 E-value=0.033 Score=50.38 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=17.2
Q ss_pred eeEEeCCCCChHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAA 309 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~l 309 (581)
-+.|+||+|+|||+|++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999973
No 194
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.46 E-value=0.034 Score=51.84 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=22.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..|+|.|+||+|||++++.+++.++
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999998653
No 195
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.45 E-value=0.045 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=24.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++|+||+|+|||+|++.+++.++..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~i 33 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCEL 33 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 689999999999999999999987433
No 196
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.45 E-value=0.034 Score=51.98 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.++||+|+|||+|++.++..++
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 688999999999999999998875
No 197
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.44 E-value=0.053 Score=53.71 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=23.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIYV 319 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~~ 319 (581)
.++|+|+||+|||++++.+++......++
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 58999999999999999999864333333
No 198
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.39 E-value=0.038 Score=55.24 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++|+||||+|||+|+..++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 4799999999999999999875
No 199
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.33 E-value=0.048 Score=50.76 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=24.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYV 319 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~ 319 (581)
..+.++|+||+|||++++.+++.++...++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 368899999999999999999987433333
No 200
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.21 E-value=0.066 Score=57.44 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=23.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
+++++||+|+|||+++++++...+.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC
Confidence 7999999999999999999999864
No 201
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.11 E-value=0.053 Score=50.24 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=24.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.+.|.|++|+|||++++.+++.++..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~ 31 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYL 31 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 5889999999999999999997765443
No 202
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.04 E-value=0.046 Score=53.54 Aligned_cols=25 Identities=36% Similarity=0.610 Sum_probs=22.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++.++||+|+|||+|++.++....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999999999999999998753
No 203
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.02 E-value=0.053 Score=49.13 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.|+|++|+|||++++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999875
No 204
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.02 E-value=0.057 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988753
No 205
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.00 E-value=0.063 Score=54.22 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=26.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~ 322 (581)
.++++|++|+|||+|++.++...+. .+.+.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 7999999999999999999998853 3445543
No 206
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.95 E-value=0.047 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+-|.||+|+||||+++.++..++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 588999999999999999998764
No 207
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.92 E-value=0.058 Score=49.71 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=21.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.++++|++|+|||+|++.++...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999999764
No 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.91 E-value=0.053 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++|+|+||+|||+|++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998553
No 209
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.90 E-value=0.06 Score=47.52 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++++++|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998864
No 210
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.86 E-value=0.046 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++|+|+||+|||++++.+++.++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999998764
No 211
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.79 E-value=0.28 Score=47.08 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.4
Q ss_pred CceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 288 GDIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 288 g~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..+.|+|+|.||+|||+|+..+...-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 34789999999999999999987643
No 212
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.77 E-value=0.063 Score=47.43 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++++++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 213
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.76 E-value=0.062 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=19.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.++++|+||+|||+|+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999864
No 214
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.76 E-value=0.072 Score=49.07 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..|.|.|++|+|||++++.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999997
No 215
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.75 E-value=0.052 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999865
No 216
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.66 E-value=0.069 Score=47.23 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++++++|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998764
No 217
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.63 E-value=0.067 Score=49.46 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
..|.|+|.+|+|||++++.+++.++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~v 40 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHV 40 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 3588999999999999999999865433
No 218
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.62 E-value=0.068 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998854
No 219
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.61 E-value=0.066 Score=49.41 Aligned_cols=23 Identities=43% Similarity=0.837 Sum_probs=21.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.|+|++|+|||+|++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999875
No 220
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.59 E-value=0.058 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p 50 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKP 50 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999998753
No 221
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.56 E-value=0.092 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.262 Sum_probs=22.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
..|.|.|++|+|||++++.+++ ++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 3699999999999999999998 543
No 222
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.56 E-value=0.069 Score=53.79 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
.++|+||+|+|||+|+..+|+.++..+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~ei 68 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEV 68 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcE
Confidence 689999999999999999999987543
No 223
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.55 E-value=0.14 Score=56.27 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=19.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+++.|+||||||+++.++...+
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999888776543
No 224
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.54 E-value=0.062 Score=50.20 Aligned_cols=32 Identities=25% Similarity=0.217 Sum_probs=24.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC-cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR-GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~-~~~~~~~ 322 (581)
-++++|+||+|||+|+..++..... .+|++..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 5899999999999999999873222 3445543
No 225
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.54 E-value=0.064 Score=47.48 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+++|++|+|||+|+..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 226
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.54 E-value=0.072 Score=46.86 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++++++|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999998854
No 227
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.52 E-value=0.069 Score=47.54 Aligned_cols=22 Identities=41% Similarity=0.776 Sum_probs=20.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+++|+||+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 5899999999999999998874
No 228
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.52 E-value=0.071 Score=46.97 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|++.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998863
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.51 E-value=0.06 Score=51.18 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
-++|+||||+|||+|++.++..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5899999999999999999983
No 230
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.51 E-value=0.09 Score=47.95 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=21.7
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999865
No 231
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.48 E-value=0.075 Score=47.49 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++|+++|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 232
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.47 E-value=0.083 Score=53.78 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=26.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC--C-------Cc-EEEecCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS--P-------RG-IYVCGNA 323 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~--~-------~~-~~~~~~~ 323 (581)
-+.|+||||+|||+|++.++... + .. +|+++..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 58999999999999999999887 2 23 6776654
No 233
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.46 E-value=0.076 Score=47.54 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=21.3
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++|+++|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988764
No 234
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.46 E-value=0.051 Score=52.01 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 588999999999999999987764
No 235
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.42 E-value=0.066 Score=46.94 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999864
No 236
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.41 E-value=0.043 Score=52.14 Aligned_cols=25 Identities=12% Similarity=0.217 Sum_probs=15.4
Q ss_pred eeEEeCCCCChHHHHHHHHH-HHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAA-AVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la-~~~~~ 315 (581)
-+.|+||+|+|||++++.++ ...+.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp EEEEECSCC----CHHHHHHC----C
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 58899999999999999999 88754
No 237
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.40 E-value=0.09 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.2
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.++++|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998753
No 238
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.35 E-value=0.048 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999987764
No 239
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.34 E-value=0.078 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+++++|++|+|||+|+..+....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 240
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.32 E-value=0.078 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998763
No 241
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.31 E-value=0.077 Score=46.73 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
+++++|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 242
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.30 E-value=0.061 Score=48.83 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=20.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|++.++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998753
No 243
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.30 E-value=0.083 Score=46.29 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++++|++|+|||+|+..+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998653
No 244
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.28 E-value=0.083 Score=48.02 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.3
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+++|++|+|||+|++++.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 36899999999999999988876543
No 245
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.26 E-value=0.072 Score=47.11 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++|+++|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 58999999999999999998854
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.26 E-value=0.076 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=20.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..+.++|+||+|||+|++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999753
No 247
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.25 E-value=0.078 Score=48.06 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-.+|+|++|+|||+|+++|.-.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4689999999999999999988753
No 248
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.21 E-value=0.073 Score=51.80 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=25.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC----CcEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP----RGIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~----~~~~~~~~ 322 (581)
.++++||+|+|||++++.++...+ ..+.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 699999999999999999998763 34545554
No 249
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.21 E-value=0.079 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999998753
No 250
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.20 E-value=0.082 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++|+++|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999998864
No 251
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.19 E-value=0.11 Score=57.46 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=14.8
Q ss_pred eeEEeCCCCChHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAA 309 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~l 309 (581)
-.|+.||||||||+.+-.+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~ 225 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEI 225 (646)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHH
Confidence 4789999999999744433
No 252
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.19 E-value=0.074 Score=48.75 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..+.|+|++|+|||+|++.++....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 5799999999999999999987653
No 253
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.16 E-value=0.061 Score=50.72 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p 61 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKP 61 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5788999999999999999987653
No 254
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.07 E-value=0.11 Score=48.61 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=24.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.+.|.|++|+|||++++.+++.++..++
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~ 32 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYV 32 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcee
Confidence 6999999999999999999998865444
No 255
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.00 E-value=0.09 Score=46.89 Aligned_cols=23 Identities=39% Similarity=0.626 Sum_probs=21.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998864
No 256
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.99 E-value=0.095 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..++++|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998654
No 257
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.95 E-value=0.13 Score=55.65 Aligned_cols=44 Identities=20% Similarity=0.193 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHH
Q 040742 257 YGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 257 ~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~ 311 (581)
+|.+..+..|.-.|..+.... ...+.++|.+|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~-----------~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLD-----------SFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSS-----------SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCC-----------ceEEEEEcCCCCCHHHHHHHHHH
Confidence 699998888887775431100 12688999999999999999996
No 258
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.94 E-value=0.065 Score=52.22 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p 58 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKP 58 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999988753
No 259
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.93 E-value=0.071 Score=47.07 Aligned_cols=21 Identities=38% Similarity=0.722 Sum_probs=19.1
Q ss_pred eeeEEeCCCCChHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la 310 (581)
+.++++|+||+|||+|++.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 479999999999999998875
No 260
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.90 E-value=0.073 Score=49.35 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-++|.||+|+|||+|+..+++...
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 699999999999999999998765
No 261
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=91.89 E-value=0.024 Score=59.28 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=18.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
-.++.|+||+|||+++..++..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 4788999999999999887653
No 262
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=91.88 E-value=0.035 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-|.++|++|+|||++++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998874
No 263
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.88 E-value=0.094 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 58999999999999999999854
No 264
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.87 E-value=0.066 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p 59 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKA 59 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999988753
No 265
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.85 E-value=0.096 Score=47.74 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999998864
No 266
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.81 E-value=0.077 Score=50.52 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.-+.|.|+||+|||++++.+++.++
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 267
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.79 E-value=0.15 Score=55.64 Aligned_cols=46 Identities=22% Similarity=0.090 Sum_probs=34.6
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHH
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.++|.+.....+...|..... +.--++++|++|+|||+||..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~------------~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKG------------EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTT------------SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhcccC------------CCceEEEEcCCCCCHHHHHHHHHh
Confidence 4588999888888777764310 012689999999999999998853
No 268
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=91.79 E-value=0.18 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=21.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+.++|++|+|||++++.++..+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 269
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.78 E-value=0.098 Score=46.88 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 58999999999999999998754
No 270
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.75 E-value=0.069 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p 61 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIP 61 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999998754
No 271
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.74 E-value=0.07 Score=52.36 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p 60 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKP 60 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 5889999999999999999988754
No 272
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.69 E-value=0.073 Score=50.70 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcC
Confidence 5889999999999999999988753
No 273
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.69 E-value=0.1 Score=46.69 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.4
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++|+++|++|+|||+|+..+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 368999999999999999998764
No 274
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.69 E-value=0.072 Score=51.45 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5889999999999999999988753
No 275
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.67 E-value=0.057 Score=51.74 Aligned_cols=24 Identities=50% Similarity=0.516 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.+
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999998874
No 276
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.67 E-value=0.1 Score=47.46 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=20.8
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999877653
No 277
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.66 E-value=0.073 Score=51.88 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p 76 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDF 76 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Confidence 5889999999999999999988753
No 278
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=91.66 E-value=0.1 Score=46.93 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++|+++|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998854
No 279
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.65 E-value=0.072 Score=51.12 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p 58 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRA 58 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999988753
No 280
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.64 E-value=0.59 Score=46.46 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-++++|++|+|||+++..+|..+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHH
Confidence 58899999999999999999765
No 281
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.64 E-value=0.074 Score=51.15 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=25.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~ 322 (581)
.+.|+||+|+|||+|++.++.+.+. .+.+.|.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 64 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 6889999999999999999988753 4555543
No 282
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.63 E-value=0.091 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998753
No 283
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.62 E-value=0.1 Score=47.34 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999999864
No 284
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.62 E-value=0.095 Score=46.84 Aligned_cols=22 Identities=41% Similarity=0.762 Sum_probs=19.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+++|++|+|||+|+..+..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999988753
No 285
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.58 E-value=0.1 Score=47.60 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.5
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.++|+++|++|+|||+|+..+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 368999999999999999999863
No 286
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.58 E-value=0.11 Score=46.50 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..|+++|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 287
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.57 E-value=0.088 Score=47.31 Aligned_cols=23 Identities=43% Similarity=0.709 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++|+|+||+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 288
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.57 E-value=0.097 Score=46.79 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=21.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+..+...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998865
No 289
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=91.56 E-value=0.11 Score=46.84 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999988753
No 290
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.54 E-value=0.11 Score=51.75 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
-++++||+|+|||+|+..+++.++..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~ 37 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVE 37 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCc
Confidence 47889999999999999999998643
No 291
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.53 E-value=0.1 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.629 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++|+|++|+|||+|++.+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999753
No 292
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.52 E-value=0.097 Score=49.86 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
.+.|+|++|+|||++++.+++.++..++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 6899999999999999999987664443
No 293
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.50 E-value=0.085 Score=47.28 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998864
No 294
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.49 E-value=0.1 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+++.||+|+|||+|++.+++.++.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~ 33 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNG 33 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTE
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCC
Confidence 5899999999999999999999873
No 295
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.47 E-value=0.098 Score=47.35 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 296
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.44 E-value=0.079 Score=51.40 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p 67 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKP 67 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999988753
No 297
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.44 E-value=0.12 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998864
No 298
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.42 E-value=0.12 Score=52.98 Aligned_cols=25 Identities=36% Similarity=0.420 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+|++|+|||+|++.++...+.
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998754
No 299
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.41 E-value=0.11 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.1
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 368999999999999999888754
No 300
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.39 E-value=0.32 Score=46.85 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++|+|+|+||+|||+|+..+...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998753
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.36 E-value=0.081 Score=52.04 Aligned_cols=32 Identities=31% Similarity=0.470 Sum_probs=25.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~ 322 (581)
.+.|+||+|+|||+|++.++.+.+. .+.+.|.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~ 83 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTB
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCE
Confidence 5889999999999999999988753 3445443
No 302
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.36 E-value=0.12 Score=46.54 Aligned_cols=23 Identities=39% Similarity=0.426 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 68999999999999999998854
No 303
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.35 E-value=0.11 Score=47.24 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.0
Q ss_pred CceeeEEeCCCCChHHHHHHHHHHH
Q 040742 288 GDIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 288 g~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..+.|+++|++|+|||+|+..+...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3478999999999999999999864
No 304
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.35 E-value=0.077 Score=51.80 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 588999999999999999998874
No 305
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.31 E-value=0.081 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p 71 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQP 71 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC
Confidence 5889999999999999999998753
No 306
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.27 E-value=0.12 Score=46.95 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998764
No 307
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.25 E-value=0.11 Score=51.73 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+++.||+|+|||+|+..+++.++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc
Confidence 5789999999999999999998864
No 308
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.24 E-value=0.12 Score=47.20 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.5
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999998864
No 309
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.22 E-value=0.11 Score=46.90 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999998754
No 310
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.22 E-value=0.083 Score=55.17 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.-|+|+|+||+|||++++.+++.++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3588999999999999999987653
No 311
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.22 E-value=0.085 Score=51.09 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5889999999999999999988754
No 312
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.20 E-value=0.2 Score=47.60 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.9
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.|+|+|++|+|||+|+..+....
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 4689999999999999999988643
No 313
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.19 E-value=0.11 Score=47.84 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.1
Q ss_pred cCceeeEEeCCCCChHHHHHHHHHHH
Q 040742 287 RGDIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 287 rg~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
...+.|+++|++|+|||+|+..+...
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34478999999999999999998864
No 314
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.18 E-value=0.12 Score=46.28 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++++|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988754
No 315
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.15 E-value=0.12 Score=47.38 Aligned_cols=24 Identities=38% Similarity=0.353 Sum_probs=21.3
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998754
No 316
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.13 E-value=0.11 Score=47.40 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=21.1
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
...++++|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999998753
No 317
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.12 E-value=0.13 Score=46.89 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 68999999999999999998864
No 318
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.11 E-value=0.087 Score=51.39 Aligned_cols=25 Identities=40% Similarity=0.583 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.+.|+||+|+|||+|++.++.+.+.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5889999999999999999988753
No 319
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.09 E-value=0.13 Score=46.70 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.1
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998753
No 320
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=91.08 E-value=0.13 Score=47.35 Aligned_cols=24 Identities=33% Similarity=0.703 Sum_probs=21.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
++|+++|++|+|||+|+..+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 689999999999999999987643
No 321
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=91.07 E-value=0.11 Score=46.64 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
++|+++|++|+|||+|+..+..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5899999999999999999874
No 322
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.06 E-value=0.1 Score=51.58 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-++|+|+||+|||+|++.++..+
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998765
No 323
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.04 E-value=0.46 Score=50.29 Aligned_cols=32 Identities=19% Similarity=0.376 Sum_probs=25.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC---CCcEEEec
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS---PRGIYVCG 321 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~---~~~~~~~~ 321 (581)
--++|+|++|+|||++++.|+.++ ...+.+.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g 328 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAA 328 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEec
Confidence 468899999999999999999875 33455543
No 324
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.04 E-value=0.086 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 688999999999999999998875
No 325
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.02 E-value=0.1 Score=49.61 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=23.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC----CCcEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS----PRGIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~----~~~~~~~~~ 322 (581)
-++++|+||+|||+|+..++... ...+|++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 58999999999999987765432 234555544
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.00 E-value=0.12 Score=51.79 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.-+.|+|++|+|||||++.++..++
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHhhcc
Confidence 3688999999999999999999874
No 327
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.00 E-value=0.098 Score=47.30 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.|+++|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 7999999999999999998753
No 328
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.00 E-value=0.13 Score=46.66 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=21.4
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998764
No 329
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.96 E-value=0.12 Score=47.18 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999998764
No 330
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.94 E-value=0.13 Score=46.48 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=20.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.++++|++|+|||+|+..+..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998874
No 331
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=90.92 E-value=0.12 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998754
No 332
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.92 E-value=0.14 Score=46.70 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.4
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.++++|++|+|||+|+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999998864
No 333
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.83 E-value=0.13 Score=46.68 Aligned_cols=25 Identities=36% Similarity=0.328 Sum_probs=21.5
Q ss_pred CceeeEEeCCCCChHHHHHHHHHHH
Q 040742 288 GDIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 288 g~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
....++++|++|+|||+|+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3358999999999999999998754
No 334
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.83 E-value=0.14 Score=47.03 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=21.9
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.|+++|++|+|||+|+..+...-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3689999999999999999987643
No 335
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.80 E-value=0.11 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5889999999999999999998753
No 336
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.76 E-value=0.13 Score=46.94 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=22.2
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.|+++|++|+|||+|+..+...-
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3689999999999999999998754
No 337
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.75 E-value=0.1 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 5788999999999999999998754
No 338
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.71 E-value=0.13 Score=46.51 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+++|++|+|||+|+..+..
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999884
No 339
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=90.69 E-value=0.13 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998764
No 340
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.67 E-value=0.12 Score=53.11 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=25.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~ 322 (581)
-+.|+||+|+|||+|++.++.+.+. .+++.|.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 65 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEK 65 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCE
Confidence 5788999999999999999998853 3444443
No 341
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.65 E-value=0.11 Score=52.46 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=24.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~~~~~ 321 (581)
.+.|+|+||+|||+|++.++..+ ...+.+.+
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 68999999999999999999765 34454443
No 342
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.64 E-value=0.11 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.218 Sum_probs=20.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-++|+|+||+|||+|+..++..+
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998643
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.63 E-value=0.12 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 5788999999999999999998753
No 344
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.62 E-value=0.13 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++++|+||+|||+|++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999998863
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.61 E-value=0.12 Score=52.73 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=25.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~ 321 (581)
-+.|+||+|+|||+|++.++.+.+. .+++.|
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 64 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDD 64 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECC
Confidence 5788999999999999999998753 344444
No 346
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.60 E-value=0.11 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCccHHHHHHHHHcCCCC
Confidence 5889999999999999999998753
No 347
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.58 E-value=0.16 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.2
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999988754
No 348
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.57 E-value=0.15 Score=46.68 Aligned_cols=23 Identities=39% Similarity=0.689 Sum_probs=20.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..|+++|+||+|||+|+..+...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999988753
No 349
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.51 E-value=0.14 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++++|++|+|||+|++.+...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999988643
No 350
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.50 E-value=0.13 Score=49.69 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+||+|+|||+|++.++.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999987
No 351
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.49 E-value=0.14 Score=51.04 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=25.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---CcEEEecCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---RGIYVCGNA 323 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~~~~~~~~~ 323 (581)
.+.|+||+|+|||++++.++..+. ..+.+.+..
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D 139 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGD 139 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeec
Confidence 688999999999999999998763 345554443
No 352
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.48 E-value=0.21 Score=55.09 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++.||||||||+++..+...
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999977766543
No 353
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.47 E-value=0.13 Score=52.81 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=25.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~ 321 (581)
-+.|+||+|+|||+|++.++.+.+. .+++.|
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g 72 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGD 72 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECC
Confidence 5789999999999999999998753 344444
No 354
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.40 E-value=0.1 Score=46.94 Aligned_cols=21 Identities=24% Similarity=0.570 Sum_probs=18.9
Q ss_pred eeeEEeCCCCChHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la 310 (581)
+.|+++|++|+|||+|+..+.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 589999999999999997765
No 355
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.40 E-value=0.13 Score=50.10 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=21.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+.|+||+|+|||+|++.++.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999874
No 356
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.39 E-value=0.16 Score=46.97 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.3
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998753
No 357
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.37 E-value=0.14 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|++.+...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999988764
No 358
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.34 E-value=0.17 Score=50.34 Aligned_cols=24 Identities=21% Similarity=0.309 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+|++|+|||+|++.++..++
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998764
No 359
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=90.29 E-value=0.14 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred ceeeEEeCCCCChHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la 310 (581)
.+.|+++|++|+|||+|+..+.
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999875
No 360
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.29 E-value=0.13 Score=52.72 Aligned_cols=25 Identities=28% Similarity=0.507 Sum_probs=22.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEP 55 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCC
Confidence 5789999999999999999998753
No 361
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=90.28 E-value=0.13 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..|.|.|+||+|||++++.+++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~l 98 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKNL 98 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
Confidence 46999999999999999999964
No 362
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.28 E-value=0.099 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.629 Sum_probs=10.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+++|++|+|||+|+..+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999988764
No 363
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.28 E-value=0.15 Score=50.76 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=25.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC---CCcEEEecC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS---PRGIYVCGN 322 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~---~~~~~~~~~ 322 (581)
-.+.|+|++|+|||++++.++..+ ...+.+.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 368899999999999999999875 234554443
No 364
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.20 E-value=0.16 Score=46.45 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.7
Q ss_pred ceeeEEeCCCCChHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~ 311 (581)
.+.|+++|++|+|||+|+..+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999998874
No 365
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.19 E-value=0.15 Score=47.34 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 366
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.14 E-value=0.15 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=20.3
Q ss_pred ceeeEEeCCCCChHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~ 311 (581)
.+.|+++|++|+|||+|+..+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998764
No 367
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=90.12 E-value=0.14 Score=53.49 Aligned_cols=32 Identities=28% Similarity=0.343 Sum_probs=25.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~ 322 (581)
.++++||+|+|||+++++++..++. .+.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 6999999999999999999987642 4555443
No 368
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.11 E-value=0.16 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=21.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..|+++|++|+|||+|+..+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999988643
No 369
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.11 E-value=0.17 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 68999999999999999988753
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.07 E-value=0.18 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.++++||+|+|||++++.++...+
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 699999999999999999998763
No 371
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.06 E-value=0.1 Score=48.27 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..+.|+|++|+|||+|++.++..
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999887643
No 372
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.05 E-value=0.12 Score=46.48 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.5
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998854
No 373
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.01 E-value=0.13 Score=51.23 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++++|++|+|||+|++.++..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998753
No 374
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.01 E-value=0.15 Score=46.92 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred ceeeEEeCCCCChHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~ 311 (581)
.+.|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 36899999999999999999874
No 375
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.98 E-value=0.14 Score=47.11 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=19.6
Q ss_pred ceeeEEeCCCCChHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la 310 (581)
.+.|+++|++|+|||+|++.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999998864
No 376
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=89.95 E-value=0.14 Score=52.05 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=25.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---C-CcEEEecCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---P-RGIYVCGNA 323 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~-~~~~~~~~~ 323 (581)
-++++||||+|||+|+..++..+ + ..+|+++..
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 58999999999999999998764 2 345676554
No 377
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.93 E-value=0.12 Score=50.35 Aligned_cols=24 Identities=42% Similarity=0.746 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.|
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998773
No 378
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.83 E-value=0.17 Score=50.94 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
--+.|+||+|+|||++++.++..+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999875
No 379
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.80 E-value=0.17 Score=46.03 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.5
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999998864
No 380
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.77 E-value=0.12 Score=46.88 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.++|++|+|||+|++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998864
No 381
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.76 E-value=0.11 Score=52.84 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p 57 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVP 57 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 5788999999999999999998753
No 382
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.73 E-value=0.17 Score=46.78 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..|+++|++|+|||+|+..+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 58999999999999999998864
No 383
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=89.72 E-value=0.17 Score=46.57 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.3
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998864
No 384
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.70 E-value=0.17 Score=48.18 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.8
Q ss_pred eeEEeCCCCChHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la 310 (581)
-+++.|+||+|||+|+-.++
T Consensus 32 l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 58999999999999987765
No 385
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.69 E-value=0.15 Score=50.41 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=22.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.+.|++|+|||+|++.++..++
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999998875
No 386
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.69 E-value=0.2 Score=46.75 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.5
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999998764
No 387
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.69 E-value=0.18 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 68999999999999999998754
No 388
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.63 E-value=0.18 Score=46.57 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 68999999999999999888753
No 389
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.60 E-value=0.17 Score=47.21 Aligned_cols=22 Identities=45% Similarity=0.736 Sum_probs=20.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+++|++|+|||+|+..+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 5899999999999999998874
No 390
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.59 E-value=0.17 Score=46.39 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.7
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|++++...
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999977653
No 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.48 E-value=0.15 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999876
No 392
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.46 E-value=0.21 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.681 Sum_probs=21.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.|+++|++|+|||+|+..+...-
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 689999999999999999988653
No 393
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.46 E-value=0.21 Score=51.68 Aligned_cols=20 Identities=35% Similarity=0.341 Sum_probs=18.2
Q ss_pred eeEEeCCCCChHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la 310 (581)
-++|+||||+|||+|+..++
T Consensus 180 i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHH
Confidence 59999999999999999765
No 394
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.41 E-value=0.18 Score=45.58 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+.++|++|+|||+|+..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999998765
No 395
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.39 E-value=0.13 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.+
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 588999999999999999998875
No 396
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=89.35 E-value=0.15 Score=46.28 Aligned_cols=24 Identities=21% Similarity=0.486 Sum_probs=20.7
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999887643
No 397
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=89.33 E-value=0.17 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..+.|+|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 398
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.32 E-value=0.15 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
++.|+|++|+|||+|++.++...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 48999999999999999999763
No 399
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.29 E-value=0.73 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
--++++|++|+|||+++..+|..+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999998765
No 400
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.27 E-value=0.33 Score=51.80 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=23.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
..|.|.|.+|+|||++++++++.+..
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999998763
No 401
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.25 E-value=0.29 Score=55.44 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=18.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999977766543
No 402
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.23 E-value=0.22 Score=45.01 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.8
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..+||.|++|+|||+++..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47999999999999999998874
No 403
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.21 E-value=0.16 Score=46.80 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
..++++|++|+|||+|++.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4799999999999999998763
No 404
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.21 E-value=0.14 Score=51.01 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=25.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC---cEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR---GIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~---~~~~~~~ 322 (581)
.+.|+||+|+|||+|++.++.+.+. .+.+.|.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~ 116 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQ 116 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCE
Confidence 6899999999999999999998754 3445443
No 405
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.19 E-value=0.52 Score=43.33 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=17.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
-.+++|++|+|||+.+-.+++.
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r 31 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRR 31 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3677999999999766666544
No 406
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.16 E-value=0.33 Score=50.41 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++...+
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~ 94 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGN 94 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 799999999999999999998753
No 407
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=89.07 E-value=0.23 Score=45.05 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+.++|++|+|||+|++.+...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 58899999999999999998764
No 408
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.06 E-value=0.21 Score=43.90 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-.+++||.|+|||+|+.++.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999999998654
No 409
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.06 E-value=0.22 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=22.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..|+|+|.||+|||++++.+++.+
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999875
No 410
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=89.05 E-value=0.27 Score=45.62 Aligned_cols=28 Identities=14% Similarity=0.129 Sum_probs=25.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
-|.+.|++|+|||++++.+|+.++..++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 6899999999999999999999987655
No 411
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.02 E-value=0.26 Score=53.22 Aligned_cols=24 Identities=42% Similarity=0.396 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+|++|+|||+|++.++..+.
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhc
Confidence 699999999999999999998874
No 412
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.01 E-value=0.21 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=20.2
Q ss_pred ceeeEEeCCCCChHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~ 311 (581)
...|+++|++|+|||+|+..+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999988764
No 413
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=88.91 E-value=0.2 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.+.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p 80 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERP 80 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCC
Confidence 5889999999999999999998754
No 414
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.88 E-value=0.19 Score=52.40 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=21.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.+.|+|++|+|||+|++.++...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 578999999999999999998764
No 415
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=88.87 E-value=0.22 Score=50.79 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=25.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC---CCcEEEec
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS---PRGIYVCG 321 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~---~~~~~~~~ 321 (581)
-.++|+|++|+||||+++.++..+ ...+.+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 368899999999999999999876 23455444
No 416
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=88.81 E-value=0.16 Score=46.07 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.2
Q ss_pred eeeEEeCCCCChHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la 310 (581)
++|+++|++|+|||+|+..+.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999998874
No 417
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=88.81 E-value=0.24 Score=46.38 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=19.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+|+|+||+|||+|+..+..
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999988763
No 418
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=88.77 E-value=0.23 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=20.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+|+|+||+|||+|+.++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999998753
No 419
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=88.72 E-value=0.31 Score=46.43 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
.|.+.|.+|+|||++++.+++.++.
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999999854
No 420
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=88.68 E-value=0.25 Score=49.35 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
-++++|+||+|||+|+..++..
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 421
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.61 E-value=0.15 Score=52.60 Aligned_cols=24 Identities=38% Similarity=0.436 Sum_probs=21.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+||+|+|||+|++.++.+.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 588999999999999999998764
No 422
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.58 E-value=0.26 Score=44.91 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=19.4
Q ss_pred eEEeCCCCChHHHHHHHHHHH
Q 040742 292 VIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~ 312 (581)
+|++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999865
No 423
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.54 E-value=0.22 Score=47.11 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=23.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEEEe
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIYVC 320 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~~~ 320 (581)
.-+.|.|+.|+|||++++.++.. ...+.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 36889999999999999999987 3334443
No 424
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.51 E-value=0.36 Score=48.11 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=25.0
Q ss_pred ccCceeeEEeCCCCChHHHHHHHHHHHC------CCcEEEecCC
Q 040742 286 VRGDIHVIVVGDPGLGKSQLLQAAAAVS------PRGIYVCGNA 323 (581)
Q Consensus 286 ~rg~~~iLL~G~pGtGKT~la~~la~~~------~~~~~~~~~~ 323 (581)
.+| + +++.||||+|||+|+-.++..+ ...+|+++..
T Consensus 27 ~~G-i-teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 27 QSG-L-LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp CSE-E-EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred cCC-e-EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 456 4 8999999999999966654332 2345676654
No 425
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.49 E-value=0.25 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..|.|+|+||+|||+|+..+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999853
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.33 E-value=0.18 Score=47.87 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
.+-|.|+||+|||++++.+++.++-.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999999999876543
No 427
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=88.32 E-value=0.26 Score=49.84 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=20.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
-++++|+||+|||+|+..++..
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 428
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.23 E-value=0.23 Score=49.79 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-++++|+||+|||+|+..++..+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHhHHHHHHHHHH
Confidence 69999999999999999998764
No 429
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=88.23 E-value=0.14 Score=49.72 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.2
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
..|.|.|++|+|||++++.+++.+..
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999998754
No 430
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.20 E-value=0.12 Score=47.42 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=5.9
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+++|++|+|||+|+..+...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999988754
No 431
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.16 E-value=0.25 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=20.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++++|++|+|||+|+..++...
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 69999999999999999988764
No 432
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=88.11 E-value=0.22 Score=52.62 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC---C-c-EEEec
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP---R-G-IYVCG 321 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~---~-~-~~~~~ 321 (581)
-+.|+||+|+|||+|++.++.+.. . . +++.+
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 599999999999999999999873 3 3 66665
No 433
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=88.04 E-value=0.22 Score=50.54 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=24.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC----CCcEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS----PRGIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~----~~~~~~~~~ 322 (581)
-++++|+||+|||+|+..++..+ ...+|++..
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 58999999999999998887543 234566554
No 434
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.04 E-value=0.29 Score=49.59 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCc
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRG 316 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~ 316 (581)
-+.|+|++|+|||+|++.++......
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 58999999999999999999998643
No 435
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.01 E-value=0.2 Score=51.57 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
-+++.||+|+|||+|+..+++.++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~i 30 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEV 30 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeE
Confidence 588999999999999999999887543
No 436
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=88.01 E-value=0.3 Score=45.84 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
.-|+|+|++|+|||+|+..+..-
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 46999999999999999887754
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.00 E-value=0.24 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-+.|+||+|+|||+|++.++.....
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 6899999999999999999999854
No 438
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.98 E-value=0.34 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+|++|+|||+|++.++ ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 57899999999999999999 654
No 439
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.97 E-value=0.27 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++++|.+|+|||+|+..++..+
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 79999999999999999998764
No 440
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.96 E-value=0.2 Score=49.61 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=20.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++++|++|+|||+++..++..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998765
No 441
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.94 E-value=0.29 Score=50.40 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.8
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
+.|++++|++|+|||++++.++..+
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999988653
No 442
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=87.89 E-value=0.27 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
..|+++|++|+|||+|+..+..
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998764
No 443
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=87.88 E-value=0.25 Score=53.19 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=25.8
Q ss_pred eeEEeCCCCChHHHHHHH--HHHHCC---CcEEEecCC
Q 040742 291 HVIVVGDPGLGKSQLLQA--AAAVSP---RGIYVCGNA 323 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~--la~~~~---~~~~~~~~~ 323 (581)
.++|+||+|+|||+|++. ++.+.+ ..+++++..
T Consensus 41 ~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 689999999999999999 455543 467777754
No 444
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=87.67 E-value=0.25 Score=48.22 Aligned_cols=22 Identities=41% Similarity=0.786 Sum_probs=19.7
Q ss_pred ceeeEEeCCCCChHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAA 310 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la 310 (581)
.++|+++|+||+|||+|+..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 3689999999999999998864
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=87.60 E-value=0.23 Score=49.30 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+|++|+|||+|++.++....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 588999999999999999997764
No 446
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=87.37 E-value=0.27 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++|+|+|+||+|||+|+.++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999754
No 447
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=87.26 E-value=0.29 Score=49.76 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-+.|+|++|+|||+|++.++....
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 588999999999999999996553
No 448
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.25 E-value=0.28 Score=46.07 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-|.|.|++|+|||++++.+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998763
No 449
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.13 E-value=0.39 Score=48.74 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..+.|+|+||+|||+|+..+....
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 450
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=87.12 E-value=0.34 Score=48.12 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..++|+|+||+|||+|+..+...
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999987654
No 451
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.02 E-value=0.48 Score=44.87 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.1
Q ss_pred eeEEeCCCCChHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAA 309 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~l 309 (581)
.++++|++|+|||+++...
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 7999999999999866544
No 452
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=87.00 E-value=0.44 Score=53.97 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=17.1
Q ss_pred eeEEeCCCCChHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~ 311 (581)
..|+.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999987665543
No 453
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=86.86 E-value=0.39 Score=59.16 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=21.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+++|+||||||||+||.+++..+
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999987654
No 454
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=86.83 E-value=0.3 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=19.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.|+|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999998754
No 455
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.50 E-value=1 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+++.|+.|+|||+|++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 47889999999999999999875
No 456
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=86.41 E-value=0.37 Score=52.66 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC---CCcEE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS---PRGIY 318 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~---~~~~~ 318 (581)
.|+|+|.||+|||++++.+++.+ +..++
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v 84 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 84 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 69999999999999999999987 54444
No 457
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.39 E-value=0.43 Score=43.98 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.2
Q ss_pred eeEEeCCCCChHH-HHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKS-QLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT-~la~~la~~~ 313 (581)
=.+++|+.|+||| .|++++.+..
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~ 45 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQ 45 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 3678999999999 8888887654
No 458
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.20 E-value=0.37 Score=49.05 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=24.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC----CCcEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS----PRGIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~----~~~~~~~~~ 322 (581)
-+++.|+||+|||+|+..++..+ ...+|++..
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 58999999999999998887543 234566654
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=86.10 E-value=0.18 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=20.2
Q ss_pred ceeeEEeCCCCChHHHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~ 311 (581)
.+.|+++|++|+|||+|+..+..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999988764
No 460
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=86.09 E-value=0.37 Score=48.14 Aligned_cols=22 Identities=23% Similarity=0.452 Sum_probs=19.4
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
-+++.|+||+|||+|+..++..
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999999888754
No 461
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=86.07 E-value=0.21 Score=46.60 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=19.0
Q ss_pred ceeeEEeCCCCChHHHHHHHH
Q 040742 289 DIHVIVVGDPGLGKSQLLQAA 309 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~l 309 (581)
.+.|+++|++|+|||+|+..+
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTB
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999983
No 462
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=85.94 E-value=0.29 Score=45.54 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.4
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 58999999999999999988653
No 463
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=85.83 E-value=0.49 Score=44.68 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=25.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCCCcEE
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSPRGIY 318 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~~~~~ 318 (581)
..|.+.|++|+|||++++.+|+.++..++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 46899999999999999999998876553
No 464
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=85.80 E-value=0.27 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=18.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-|.|.|++|+|||++++.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998763
No 465
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=85.78 E-value=1.7 Score=43.99 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.3
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..+.++|+||+|||+|+..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998764
No 466
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=85.59 E-value=0.2 Score=47.49 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.1
Q ss_pred eEEeCCCCChHHHHHHHHHHHCC
Q 040742 292 VIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 292 iLL~G~pGtGKT~la~~la~~~~ 314 (581)
+.|+||+|+|||+|+++++..++
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 45679999999999999998875
No 467
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=85.75 E-value=0.16 Score=46.79 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=19.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
+.|+++|++|+|||+|+..+..
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 5899999999999999987753
No 468
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.52 E-value=0.39 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=22.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||+|++.++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEECCCCCcHHHHHHHHhcCCC
Confidence 688999999999999999998864
No 469
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=85.52 E-value=0.39 Score=44.55 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-.+++||.|+|||+++.++.-.+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhc
Confidence 468899999999999999986653
No 470
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.40 E-value=0.42 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.|+++|++|+|||+|+..+...
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.30 E-value=0.35 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-|.+.|++|+|||++++.+++.+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998876
No 472
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=85.29 E-value=0.43 Score=47.27 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.2
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.++|+||+|||+|+.++...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 7999999999999999999854
No 473
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.16 E-value=0.38 Score=45.22 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=23.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPR 315 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~ 315 (581)
-|.+.|++|+|||++++.+++.+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 6899999999999999999998765
No 474
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=85.12 E-value=0.41 Score=51.62 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.+.|+||+|+|||||++.++...+
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999998763
No 475
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.08 E-value=0.38 Score=49.02 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=19.7
Q ss_pred eeeEEeCCCCChHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~ 311 (581)
++|+++|++|+|||+|+..+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 4799999999999999999754
No 476
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=85.01 E-value=0.36 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..++++|++|+|||+++..++..+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999888665
No 477
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=84.96 E-value=0.67 Score=54.95 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=36.0
Q ss_pred ccccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHHH
Q 040742 254 PSIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 254 p~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+.++|.+.....|...|..+... ..-+.++|++|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~------------~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGE------------PGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTS------------CEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhccCC------------CCEEEEEeCCCCCHHHHHHHHhcC
Confidence 55889999998888887644210 025889999999999999888653
No 478
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.89 E-value=0.59 Score=56.78 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=25.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC----CCcEEEecCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS----PRGIYVCGNA 323 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~----~~~~~~~~~~ 323 (581)
.+|++||||||||+||++++... ...+|++...
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEccc
Confidence 49999999999999999988654 2345665443
No 479
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=84.80 E-value=0.51 Score=49.48 Aligned_cols=25 Identities=40% Similarity=0.624 Sum_probs=22.0
Q ss_pred ceeeEEeCCCCChHHHHHHHHHHHC
Q 040742 289 DIHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 289 ~~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.+.|+|+||+|||+|++.+....
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 3689999999999999999998653
No 480
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.33 E-value=0.42 Score=48.25 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+.++|+||+|||+++..++..+
T Consensus 58 ~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 58 RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998764
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.21 E-value=0.47 Score=51.03 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.+++.|+||+|||+|++.++...
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998765
No 482
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=84.19 E-value=0.48 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.1
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
.-|.+.|.+|+|||++++.+++.+.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999998764
No 483
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=84.14 E-value=0.24 Score=48.95 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=18.7
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
-|.+.|++|+|||++++.+++.++
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999998764
No 484
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=83.98 E-value=0.51 Score=45.55 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.9
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
++|+++|++|+|||+|+.++...
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998853
No 485
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=83.94 E-value=1.3 Score=41.39 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=17.4
Q ss_pred cCceeeEEeCCCCChHHHHHHHHHHH
Q 040742 287 RGDIHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 287 rg~~~iLL~G~pGtGKT~la~~la~~ 312 (581)
+|.+ .+++|+.|+|||+.|-.++..
T Consensus 27 ~G~l-~vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 27 NGWI-EVICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp SCEE-EEEECSTTSCHHHHHHHHHHH
T ss_pred CCEE-EEEECCCCCcHHHHHHHHHHH
Confidence 3433 457999999999766655543
No 486
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=83.88 E-value=0.45 Score=44.60 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=21.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-|.|.|++|+|||++++.+++.+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 487
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=83.63 E-value=0.27 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=19.5
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+.|+|+||+|||+|++.++...
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999987654
No 488
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=83.54 E-value=0.56 Score=49.40 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-+++.|+||+|||+|+..++..+
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999887643
No 489
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=83.47 E-value=0.62 Score=47.95 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHH
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~ 312 (581)
..+.|+|+||+|||+|++++...
T Consensus 21 ~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 21 LKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999873
No 490
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=83.34 E-value=0.43 Score=38.79 Aligned_cols=33 Identities=24% Similarity=0.529 Sum_probs=24.6
Q ss_pred EEEEEEEEeCCCCcEEEEeeCCCeecCCccccCCCCCCCC
Q 040742 65 LVVRMDFECSKCKSEILRIFPEGKFSPPLVCTLHGCKSKT 104 (581)
Q Consensus 65 ~~~~~~~~C~~C~~~~~~~~~~~~~~~p~~C~~~~C~~~~ 104 (581)
.+...-|+|.+||..| ......|..|+ .|++.+
T Consensus 62 ~L~v~p~~C~~CG~~F-----~~~~~kPsrCP--~CkSe~ 94 (105)
T 2gmg_A 62 VLLIKPAQCRKCGFVF-----KAEINIPSRCP--KCKSEW 94 (105)
T ss_dssp EEEECCCBBTTTCCBC-----CCCSSCCSSCS--SSCCCC
T ss_pred EEEEECcChhhCcCee-----cccCCCCCCCc--CCCCCc
Confidence 3455568999999997 33567789998 588863
No 491
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=83.29 E-value=1.8 Score=40.93 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=22.6
Q ss_pred eeEEeCCCCChHHHHHHHHHHHCCCcE
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVSPRGI 317 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~~~~~ 317 (581)
+++++||+|+|||.++-.++......+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~ 136 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPT 136 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCE
Confidence 699999999999999988887764433
No 492
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=83.20 E-value=0.5 Score=51.29 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.6
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHCC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVSP 314 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~~ 314 (581)
..|+|.|.||+|||++++.+++.+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999998865
No 493
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=83.15 E-value=0.58 Score=47.72 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=19.9
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
-.+++||+|+|||+|+.+++-.+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998664
No 494
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.11 E-value=0.54 Score=47.96 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=23.8
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC----CCcEEEecC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS----PRGIYVCGN 322 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~----~~~~~~~~~ 322 (581)
-+++.|+||+|||+|+..++..+ ...+|++..
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 47889999999999998887543 234556544
No 495
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=83.10 E-value=0.65 Score=45.99 Aligned_cols=22 Identities=45% Similarity=0.724 Sum_probs=20.1
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.++|.||+|||+|+.++...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999998753
No 496
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=83.07 E-value=0.82 Score=46.79 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=21.0
Q ss_pred eeEEeCCCCChHHHHHHHHHHHC
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~~ 313 (581)
.++++|++|+|||+|++.+++.+
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCChhHHHHHHHHHH
Confidence 79999999999999999988764
No 497
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=83.06 E-value=0.39 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.5
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..++++|+||+|||+++..++..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998765
No 498
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=82.83 E-value=1.1 Score=51.66 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=33.6
Q ss_pred cccccHHHHHHHHHHHhcCcccccCCCCCccccCceeeEEeCCCCChHHHHHHHHHH
Q 040742 255 SIYGHELVKAGITLALFGGVRKHSMYQNKVPVRGDIHVIVVGDPGLGKSQLLQAAAA 311 (581)
Q Consensus 255 ~I~G~e~vk~~lll~l~~g~~~~~~~~~~~~~rg~~~iLL~G~pGtGKT~la~~la~ 311 (581)
..+|.+.....|...|..... . .-+.++|++|+|||+||+.+++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~------~-------RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRP------A-------KNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCS------S-------CEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCC------C-------eEEEEEcCCCccHHHHHHHHHH
Confidence 348998888888777764210 0 1689999999999999999885
No 499
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=82.75 E-value=0.56 Score=49.00 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.0
Q ss_pred eeeEEeCCCCChHHHHHHHHHHHC
Q 040742 290 IHVIVVGDPGLGKSQLLQAAAAVS 313 (581)
Q Consensus 290 ~~iLL~G~pGtGKT~la~~la~~~ 313 (581)
..++++|+||+|||+++..++..+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHH
Confidence 479999999999999988888665
No 500
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=82.72 E-value=0.67 Score=47.33 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.3
Q ss_pred eeEEeCCCCChHHHHHHHHHHH
Q 040742 291 HVIVVGDPGLGKSQLLQAAAAV 312 (581)
Q Consensus 291 ~iLL~G~pGtGKT~la~~la~~ 312 (581)
.+.|+|+||+|||+|+.++...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999876
Done!