BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040744
(440 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2TBP5|TMM53_BOVIN Transmembrane protein 53 OS=Bos taurus GN=TMEM53 PE=2 SV=1
Length = 294
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 108/273 (39%), Gaps = 39/273 (14%)
Query: 167 VVVLLGWLGAKQKHLRKYAEWYTSKGFHVITFTFPMAEILSYQVGG------KAEQNIEL 220
+V+LLGW G K+L KY+ Y +G VI +T P + + G A++ +EL
Sbjct: 37 LVILLGWGGCSDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSETLGIPSLRVLAQKLLEL 96
Query: 221 LVNHLADCLEDEGKNLVFHTFSNTGWLTYGAILEKFQNKDPSLMGRIRGCIVDSAPVASP 280
L ++ E E + L+FH FSN G + Y +LE Q R+ G I DS P S
Sbjct: 97 LFDY-----EVEKEPLLFHVFSNAGVMLYRYVLELLQTHQRFCHLRVVGTIFDSGPGDS- 150
Query: 281 DPQVWASGFSAAFLKKNSVATKGIVYTNELETDELVGSRASGEPKPAVTETALLVVLEKF 340
N L + P + L F
Sbjct: 151 ---------------------------NLLGALRALAVVLEHRPAALRLLLLVAFTLVAF 183
Query: 341 FEVILHLPAVNRRLSDVLGLLSSGQPACPQLYIYSSADRVIPAESVESFIEEQRKAGREV 400
+L P + L P+LY+YS AD V+ A VE +E + V
Sbjct: 184 LFHVLLAPLTALFHTHFYDRLLDAASRWPELYLYSRADEVVLARDVERMVEARLAHQVLV 243
Query: 401 RACNFVSTPHVDHFRNDPKLYTTQLSQFLEDYV 433
R+ +FVS+ HV H R+ P YTT F+ V
Sbjct: 244 RSVDFVSSAHVSHLRDYPTYYTTLCINFMHSCV 276
>sp|Q9D0Z3|TMM53_MOUSE Transmembrane protein 53 OS=Mus musculus GN=Tmem53 PE=2 SV=1
Length = 276
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/279 (27%), Positives = 114/279 (40%), Gaps = 39/279 (13%)
Query: 161 AMKSRTVVVLLGWLGAKQKHLRKYAEWYTSKGFHVITFTFPMAEILSYQVGG------KA 214
A K + VV+LLGW G + K+L KY+ Y +G VI +T P + + G A
Sbjct: 29 AGKQQPVVILLGWGGCRDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVIA 88
Query: 215 EQNIELLVNHLADCLEDEGKNLVFHTFSNTGWLTYGAILEKFQNKDPSLMGRIRGCIVDS 274
++ +ELL ++ E E + L+FH FSN G + Y +LE Q + G I DS
Sbjct: 89 QKLLELLFDY-----EIEREPLLFHVFSNAGVMLYRYVLELLQTHQRFRHLHVVGTIFDS 143
Query: 275 APVASPDPQVWASGFSAAFLKKNSVATKGIVYTNELETDELVGSRASGEPKPAVTETALL 334
P G S ++AT + L
Sbjct: 144 GP-----------GDSNLIGALRALATI---------LERRPAVLRLLLLAAFALVVILF 183
Query: 335 VVLEKFFEVILHLPAVNRRLSDVLGLLSSGQPACPQLYIYSSADRVIPAESVESFIEEQR 394
L F + H +R L P+LY+YS AD+V+ A VE +E +
Sbjct: 184 HFLLAPFTALFHTHFYDR--------LQDSGSCWPELYLYSRADKVVSARDVERMVEARL 235
Query: 395 KAGREVRACNFVSTPHVDHFRNDPKLYTTQLSQFLEDYV 433
VR +FVS+ HV H R+ P YT+ F+ + V
Sbjct: 236 AHQVMVRGVDFVSSAHVSHLRDYPTYYTSLCVDFMHNCV 274
>sp|Q6DHN0|TMM53_DANRE Transmembrane protein 53 OS=Danio rerio GN=tmem53 PE=2 SV=1
Length = 281
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 120/278 (43%), Gaps = 44/278 (15%)
Query: 167 VVVLLGWLGAKQKHLRKYAEWYTSKGFHVITFTFPM-----AEILSY-QVGGKAEQNIEL 220
VV+LLGW G++ KHL KY+ Y +G + +T P+ +E L Y ++ A + +EL
Sbjct: 29 VVILLGWAGSRDKHLAKYSSIYNEQGCTTLRYTAPLKTVFISESLGYKELRSTAHKLLEL 88
Query: 221 LVNHLADCLEDEGKNLVFHTFSNTGWLTYGAILEKFQNKDPSLMGRIRGCIVDSAPVASP 280
L ++ E E + FH FSN G++ Y ++E + + G +VDSAP +
Sbjct: 89 LYDY-----EVENNPIFFHVFSNGGFMLYRYMVELLHSHKQFSTLCVVGTVVDSAPGS-- 141
Query: 281 DPQVWASGFSAAFLKKNSVATKGIVYTNELETDELVGSRASGEPKPAVTETALLVVL--- 337
+N V L + + PK V L+ L
Sbjct: 142 ---------------QNVVGA-------------LRALKTTLGPKVNVLLQYFLLALFAV 173
Query: 338 EKFFEVILHLPAVNRRLSDVLGLLSSGQPACPQLYIYSSADRVIPAESVESFIEEQRKAG 397
F I+ P + + PQ+Y+YS ADRVI VE ++ ++ G
Sbjct: 174 AVFLLRIVLYPLTKYFHRNHYDAMMEHPAPWPQMYLYSRADRVIRYRDVEKMVKGLQEKG 233
Query: 398 REVRACNFVSTPHVDHFRNDPKLYTTQLSQFLEDYVVT 435
V + +F++ HV FR+ P+ Y+ + FL + T
Sbjct: 234 LMVESFDFITPAHVSLFRDCPEDYSNRCRTFLSHCMTT 271
>sp|Q6DJC8|TM53B_XENLA Transmembrane protein 53-B OS=Xenopus laevis GN=tmem53-b PE=2 SV=1
Length = 285
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 119/273 (43%), Gaps = 38/273 (13%)
Query: 167 VVVLLGWLGAKQKHLRKYAEWYTSKGFHVITFTFP-----MAEILSY-QVGGKAEQNIEL 220
VV+LLGW G K ++L KY+ Y ++G VI +T ++E L + + A++ +EL
Sbjct: 29 VVILLGWGGCKDQYLAKYSAIYHNQGCTVIKYTAAWNAVFISESLGFSSLREDAKKLLEL 88
Query: 221 LVNHLADCLEDEGKNLVFHTFSNTGWLTYGAILEKFQNKDPSLMGRIRGCIVDSAPVASP 280
L ++ E E ++FH FSN G++ Y I+E + + G I DSAP
Sbjct: 89 LFDY-----EIEKSPILFHVFSNGGFMLYRYIVELLHSHCRLNKLHVVGTIFDSAP---- 139
Query: 281 DPQVWASGFSAAFLKKNSVATKGIVYTNELETDELVGSRASGEPKPAVTETALLVVLEKF 340
+ ++ + L S + A+ A++V++
Sbjct: 140 -------------------GNRNVIGSVRALDTILRTSTNNAIRFLALAAFAIMVII--- 177
Query: 341 FEVILHLPAVNRRLSDVLGLLSSGQPACPQLYIYSSADRVIPAESVESFIEEQRKAGREV 400
++L+ P + + PQLY+YS AD +I VES I +R+
Sbjct: 178 LRIVLY-PVTKFLHENHYDAMKKDSSRWPQLYLYSRADPIISYIDVESMIAARRRCCLPT 236
Query: 401 RACNFVSTPHVDHFRNDPKLYTTQLSQFLEDYV 433
A +F + HV HFR P Y+ + FL D V
Sbjct: 237 EALDFGKSEHVSHFRRFPHRYSEMCTSFLRDCV 269
>sp|Q6P2H8|TMM53_HUMAN Transmembrane protein 53 OS=Homo sapiens GN=TMEM53 PE=2 SV=1
Length = 277
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 12/116 (10%)
Query: 167 VVVLLGWLGAKQKHLRKYAEWYTSKGFHVITFTFPMAEILSYQVGG------KAEQNIEL 220
VV+LLGW G K K+L KY+ Y +G VI +T P + + G A++ +EL
Sbjct: 37 VVILLGWGGCKDKNLAKYSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLEL 96
Query: 221 LVNHLADCLEDEGKNLVFHTFSNTGWLTYGAILEKFQNKDPSLMGRIRGCIVDSAP 276
L ++ E E + L+FH FSN G + Y +LE Q + + R+ G I DSAP
Sbjct: 97 LFDY-----EIEKEPLLFHVFSNGGVMLYRYVLELLQTRRFCRL-RVVGTIFDSAP 146
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 369 PQLYIYSSADRVIPAESVESFIEEQRKAGREVRACNFVSTPHVDHFRNDPKLYTTQLSQF 428
P+LY+YS AD V+ A +E +E + R+ +FVS+ HV H R+ P YT+ F
Sbjct: 211 PELYLYSRADEVVLARDIERMVEARLARRVLARSVDFVSSAHVSHLRDYPTYYTSLCVDF 270
Query: 429 LEDYV 433
+ + V
Sbjct: 271 MRNCV 275
>sp|Q5PPS7|TM53A_XENLA Transmembrane protein 53-A OS=Xenopus laevis GN=tmem53-a PE=2 SV=1
Length = 285
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 11/116 (9%)
Query: 167 VVVLLGWLGAKQKHLRKYAEWYTSKGFHVITFTFPMAEILSYQVGG------KAEQNIEL 220
VV+LLGW G K +L KY+ Y ++G VI +T + + G A++ +EL
Sbjct: 29 VVILLGWGGCKDHYLAKYSAIYHNQGCTVIKYTAAWKAVFITESLGLNSLREDAKKLLEL 88
Query: 221 LVNHLADCLEDEGKNLVFHTFSNTGWLTYGAILEKFQNKDPSLMGRIRGCIVDSAP 276
L ++ E E +VFH FSN G++ Y I+E + P + G I DSAP
Sbjct: 89 LFDY-----EIEKSPIVFHVFSNGGFMLYRYIVELLHSHCPLNKLHVVGTIFDSAP 139
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 369 PQLYIYSSADRVIPAESVESFIEEQRKAGREVRACNFVSTPHVDHFRNDPKLYTTQLSQF 428
PQLY+YS AD +I VES I +R+ +F + HV HFR P+ Y+ + F
Sbjct: 205 PQLYLYSRADPIISYLDVESMIAARRRRCLPTETLDFGKSEHVSHFRRFPQRYSEICTSF 264
Query: 429 LEDYV 433
L D V
Sbjct: 265 LRDCV 269
>sp|Q67LB8|MDH_SYMTH Malate dehydrogenase OS=Symbiobacterium thermophilum (strain T /
IAM 14863) GN=mdh PE=3 SV=1
Length = 315
Score = 37.0 bits (84), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 12/112 (10%)
Query: 304 IVYTNELETDELVGSRASGEPKPAVTETALLVVLEKFFEVILHLPAVNRRLSDVLG--LL 361
IV TN +++ V +ASG PK V + ++ +F + + A+ DV+G L
Sbjct: 119 IVLTNPVDSMTYVALKASGFPKNRVIGQSGVLDTARFRTFLAN--AIGCSFQDVVGCVLG 176
Query: 362 SSGQPACPQLYIYSSA-----DRVIPAESVESFIEEQRKAGREVRACNFVST 408
G P L Y+SA ++++P E++++ +E RK G E+ N + T
Sbjct: 177 GHGDDMVP-LVRYTSAGGIPVEKLLPKETIDAIVERTRKGGGEI--VNLMGT 225
>sp|Q8EY78|SYS_LEPIN Serine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=serS
PE=3 SV=1
Length = 417
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 232 EGKNLVFHTFSNTGW---LTYGAILEKFQNKDPSL 263
+GKN + HT + +G TY AILE FQN+D +L
Sbjct: 373 DGKNQLVHTINGSGLALGRTYAAILENFQNEDGTL 407
>sp|Q72LS1|SYS_LEPIC Serine--tRNA ligase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=serS PE=3 SV=1
Length = 417
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 232 EGKNLVFHTFSNTGW---LTYGAILEKFQNKDPSL 263
+GKN + HT + +G TY AILE FQN+D +L
Sbjct: 373 DGKNQLVHTINGSGLALGRTYAAILENFQNEDGTL 407
>sp|P17571|NIA1_MAIZE Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2
Length = 621
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 58/159 (36%), Gaps = 34/159 (21%)
Query: 76 RVQVPVPSISFGVPSSGHKFI--------------PSNLCSSVASFPLLVNVYQSAELAK 121
R +P P G+P H F+ P+++ + F LLV VY K
Sbjct: 382 RFSLPSPDQVLGLPIGKHIFVCASIEGKLCMRAYTPTSMVDEIGHFDLLVKVY-----FK 436
Query: 122 ASKPTKTTGSIPASYSDVLYRWHLPETDAIDVSGTSDCLAMKSRTVVVLLGWLGAKQKHL 181
P G + Y D LP IDV G + R V+ G KQ+H
Sbjct: 437 NEHPKFPNGGLMTQYLD-----SLPVGSYIDVKGPLGHVEYTGRGSFVING----KQRHA 487
Query: 182 RKYAEWYTSKGFHVITFTFPMAEILSYQVGGKAEQNIEL 220
+ A G IT PM +I+ + + E + E+
Sbjct: 488 SRLAMICGGSG---IT---PMYQIIQAVLRDQPEDHTEM 520
>sp|O80722|PME4_ARATH Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1
Length = 588
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 24/108 (22%)
Query: 197 TFTFPMAEILSYQVGGKAEQNIELLV---NHLADCL----EDEGKNLVFHTFSNTGWLTY 249
T M E LS Q+G K +Q + L+ N+ DCL ED+ + + +N+ LT
Sbjct: 123 TIIEEMGEDLS-QIGSKIDQLKQWLIGVYNYQTDCLDDIEEDDLRKAIGEGIANSKILTT 181
Query: 250 GAI---------LEKFQNKDPSLMGRIRGC-------IVDSAPVASPD 281
AI + K NK L G +VD +PVA PD
Sbjct: 182 NAIDIFHTVVSAMAKINNKVDDLKNMTGGIPTPGAPPVVDESPVADPD 229
>sp|C4LA13|BIOH_TOLAT Pimelyl-[acyl-carrier protein] methyl ester esterase OS=Tolumonas
auensis (strain DSM 9187 / TA4) GN=bioH PE=3 SV=1
Length = 261
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 365 QPACPQLYIYSSADRVIPAESVESFIEEQRKAGREVRACNFVSTPHVDHFRNDPKLYTTQ 424
Q CP L IY D ++PA +V+ IE+ R V P + H P+ ++
Sbjct: 194 QLRCPVLGIYGRQDSLVPAAAVDP-IEKLITGSRSVVFAQAAHAPFISH----PQQFSEA 248
Query: 425 LSQFLE 430
L QFLE
Sbjct: 249 LRQFLE 254
>sp|P29195|CAPP1_SORBI Phosphoenolpyruvate carboxylase 1 OS=Sorghum bicolor GN=PEPC PE=2
SV=1
Length = 960
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 16/96 (16%)
Query: 340 FFEVILHLPAVNRRLSDVLGLLSSGQPACPQLYIYSSADRVIPAESVESFIEEQRKAGRE 399
FF V L L + + + G P +Y D+++ AE ++SF E+ RK E
Sbjct: 811 FFRVTLDLLEM---------VFAKGDPGIAAVY-----DKLLVAEDLQSFGEQLRKNYEE 856
Query: 400 VRACNFVSTPHVDHFRNDPKLYTTQLSQFLEDYVVT 435
+ H D DP Y Q + E Y+ T
Sbjct: 857 TKELLLQVAGHKDVLEGDP--YLKQRLRLRESYITT 890
>sp|Q8PXD4|Y1287_METMA UPF0313 protein MM_1287 OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_1287 PE=3 SV=1
Length = 626
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 31/132 (23%)
Query: 279 SPDPQVWASGFSAAFLKKNSVATKGIVYTN---------------ELETDELVGSRASGE 323
S D V+A F FL++N V KGIV + E E D + +GE
Sbjct: 250 SQDKAVFAKAFRTYFLEQNPVTGKGIVQPHPKTIIIQNKPMRPLTEAELDHVYELPYTGE 309
Query: 324 PKPAVTETALLVVLEKFFEVILHLPAVNRRLSDVLGLLSSGQPACPQLYIYSSADRVIPA 383
P+ TE + + KF L+ G C I R+I +
Sbjct: 310 THPSYTEPVPALEMVKF------------SLTTHRGCFG----GCSFCAITQHQGRMIAS 353
Query: 384 ESVESFIEEQRK 395
S+ES + E +K
Sbjct: 354 RSIESILREAKK 365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,156,602
Number of Sequences: 539616
Number of extensions: 6627464
Number of successful extensions: 16400
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 16333
Number of HSP's gapped (non-prelim): 90
length of query: 440
length of database: 191,569,459
effective HSP length: 121
effective length of query: 319
effective length of database: 126,275,923
effective search space: 40282019437
effective search space used: 40282019437
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)