BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040747
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
Nac Family Of Transcription Factors
pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
Length = 171
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 11/157 (7%)
Query: 10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
+SLPP FRF PTDEEL+V +L RK AG S+ I EID YKF+PW LP+KALFG+ EW+
Sbjct: 15 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
FFSP DRK P S PNRV G GYW+ +GTDKII+T G+++ G AP G K
Sbjct: 75 FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 132
Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
T WIMHEYRLIEP N S+KLDDW+LCRI + + S+
Sbjct: 133 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 169
>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
Derivative
pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
Length = 174
Score = 189 bits (481), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 111/157 (70%), Gaps = 11/157 (7%)
Query: 10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
+SLPP FRF PTDEEL+V +L RK AG S+ I EID YKF+PW LP+KALFG+ EW+
Sbjct: 18 LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKLA---------GNAPNGIK 120
FFSP DRK P S PNRV G GYW+ +GTDKII+T G+++ G AP G K
Sbjct: 78 FFSPRDRKYPNGSRPNRVAGSGYWK--ATGTDKIISTEGQRVGIKKALVFYIGKAPKGTK 135
Query: 121 TEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGSS 157
T WIMHEYRLIEP N S+KLDDW+LCRI + + S+
Sbjct: 136 TNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSA 172
>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
Stress-Responsive Nac1
Length = 174
Score = 156 bits (395), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 78/155 (50%), Positives = 99/155 (63%), Gaps = 16/155 (10%)
Query: 10 ISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWF 69
++LPP FRF PTD+EL+ +L RK AG+RL + I E+D YKF+PW+LP +ALFG EW+
Sbjct: 13 LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 70 FFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIK 120
FF+P DRK P S PNR G GYW+ +G DK + GR L AG AP G+K
Sbjct: 73 FFTPRDRKYPNGSRPNRAAGNGYWK--ATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 130
Query: 121 TEWIMHEYRL-----IEPHPNNDSSKLDDWILCRI 150
T+WIMHEYRL S +LDDW+LCR+
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL 165
>pdb|4H0A|A Chain A, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
pdb|4H0A|B Chain B, Crystal Structure Of A Hypothetical Protein (Sav1118) From
Staphylococcus Aureus Subsp. Aureus Mu50 At 1.90 A
Resolution
Length = 323
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 38/139 (27%)
Query: 2 GDVFDHDLISLPPCFR-------FSPTDEELLVLFLRR-----------KVAGRRLSINF 43
++F+H I+ P F+ F +DE+L L + + + + LS+ F
Sbjct: 112 AEIFNHTSINPEPSFKVDGKKYEFELSDEDLKTQTLIKYGDIYAQVYSDQQSKKVLSVRF 171
Query: 44 ITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWEDAGSGTDKI 103
+T+ EP++L S + S K P PN++ + +E
Sbjct: 172 LTKEXLADIEPYQLNSNST---------SEEHNKRPVEQNPNQL--ISLYE--------- 211
Query: 104 ITTAGRKLAGNAPNGIKTE 122
+T RKL G P I ++
Sbjct: 212 VTNEXRKLKGLKPLKINSD 230
>pdb|2PAM|A Chain A, Structure Of A H49n, H51n Double Mutant
Dtdp-4-Keto-6-Deoxy- D-Glucose-3,4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus Complexed With Tdp
pdb|2PAM|B Chain B, Structure Of A H49n, H51n Double Mutant
Dtdp-4-Keto-6-Deoxy- D-Glucose-3,4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus Complexed With Tdp
Length = 141
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 91 GYWEDAGSGTDKIITTAGRKLA----GNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWI 146
G+ E+ KII + G +A N P IK + + + + EP N + KL+ +
Sbjct: 1 GHMENKVINFKKIIDSRGSLVAIEENKNIPFSIKRVYYIFDTKGEEPRGFNANKKLEQVL 60
Query: 147 LCRISQCR 154
+C CR
Sbjct: 61 VCLNGSCR 68
>pdb|2PAE|A Chain A, Structure Of A H49n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus In Complex With Tdp
pdb|2PAE|B Chain B, Structure Of A H49n Mutant
Dtdp-4-Keto-6-Deoxy-D-Glucose-3, 4-Ketoisomerase From
Aneurinibacillus Thermoaerophilus In Complex With Tdp
Length = 141
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 91 GYWEDAGSGTDKIITTAGRKLA----GNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWI 146
G+ E+ KII + G +A N P IK + + + + EP N KL+ +
Sbjct: 1 GHMENKVINFKKIIDSRGSLVAIEENKNIPFSIKRVYYIFDTKGEEPRGFNAHKKLEQVL 60
Query: 147 LCRISQCR 154
+C CR
Sbjct: 61 VCLNGSCR 68
>pdb|3QRG|L Chain L, Crystal Structure Of Antirsvf Fab B21m
Length = 218
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 17/71 (23%)
Query: 35 AGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNRVTGVGYWE 94
A + + N I+ + +Y+ +P + P ++ NPE+ P+R +G
Sbjct: 25 ASQSVDYNGISYMHWYQQKPGQPPKLLIYA-----------ASNPESGVPDRFSG----- 68
Query: 95 DAGSGTDKIIT 105
+GSGTD +T
Sbjct: 69 -SGSGTDFTLT 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,308,785
Number of Sequences: 62578
Number of extensions: 221922
Number of successful extensions: 660
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 650
Number of HSP's gapped (non-prelim): 8
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)