Query 040747
Match_columns 157
No_of_seqs 112 out of 992
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 18:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 3.3E-56 1.1E-60 336.4 13.0 148 7-156 10-171 (174)
2 1ut7_A No apical meristem prot 100.0 2.5E-56 8.6E-61 336.6 11.4 148 7-156 12-168 (171)
3 1ldd_A APC2WHB, anaphase promo 52.1 8 0.00027 24.4 2.0 28 12-40 36-64 (74)
4 1cmb_A Met APO-repressor; DNA- 49.0 23 0.00079 23.1 3.9 38 19-60 50-87 (104)
5 4dox_A Coat protein; all helix 44.0 11 0.00037 28.8 2.0 31 5-35 148-178 (226)
6 3dct_B Nuclear receptor coacti 33.4 20 0.00067 16.8 1.2 13 19-32 2-14 (21)
7 3nr5_A MAF1, repressor of RNA 29.3 18 0.0006 26.3 1.0 32 44-75 119-154 (164)
8 1f6k_A N-acetylneuraminate lya 28.1 24 0.00082 27.4 1.7 19 12-31 106-124 (293)
9 2ehh_A DHDPS, dihydrodipicolin 28.1 24 0.00082 27.4 1.7 19 12-31 102-120 (294)
10 2ojp_A DHDPS, dihydrodipicolin 27.9 24 0.00083 27.4 1.7 18 12-30 103-120 (292)
11 3cpr_A Dihydrodipicolinate syn 27.8 25 0.00084 27.6 1.7 19 12-31 118-136 (304)
12 3dz1_A Dihydrodipicolinate syn 27.4 27 0.00093 27.5 1.9 18 12-31 109-126 (313)
13 2yxg_A DHDPS, dihydrodipicolin 27.1 26 0.00088 27.2 1.7 18 12-30 102-119 (289)
14 2rfg_A Dihydrodipicolinate syn 27.1 30 0.001 27.0 2.1 18 12-30 102-119 (297)
15 2nuw_A 2-keto-3-deoxygluconate 27.0 32 0.0011 26.7 2.2 19 12-31 98-117 (288)
16 2wkj_A N-acetylneuraminate lya 26.9 26 0.00089 27.4 1.7 19 12-31 113-131 (303)
17 2vc6_A MOSA, dihydrodipicolina 26.2 27 0.00093 27.1 1.7 19 12-31 102-120 (292)
18 3d0c_A Dihydrodipicolinate syn 26.2 33 0.0011 27.0 2.2 18 12-30 113-130 (314)
19 3b4u_A Dihydrodipicolinate syn 26.0 34 0.0012 26.6 2.2 19 12-31 105-124 (294)
20 1o5k_A DHDPS, dihydrodipicolin 25.8 28 0.00096 27.3 1.7 18 12-30 114-131 (306)
21 2v9d_A YAGE; dihydrodipicolini 24.9 30 0.001 27.7 1.7 18 12-30 133-150 (343)
22 2r91_A 2-keto-3-deoxy-(6-phosp 24.7 36 0.0012 26.3 2.2 19 12-31 97-116 (286)
23 3si9_A DHDPS, dihydrodipicolin 24.7 30 0.001 27.3 1.7 18 12-30 124-141 (315)
24 3e96_A Dihydrodipicolinate syn 24.6 37 0.0013 26.7 2.2 19 12-31 113-131 (316)
25 1xky_A Dihydrodipicolinate syn 24.4 31 0.0011 27.0 1.7 18 12-30 114-131 (301)
26 2c4b_A Barnase mcoeeti fusion; 24.3 69 0.0024 22.6 3.3 33 21-56 4-38 (143)
27 2r8w_A AGR_C_1641P; APC7498, d 24.3 38 0.0013 26.9 2.2 19 11-30 135-153 (332)
28 3g21_A GAG polyprotein, capsid 24.0 30 0.001 21.9 1.3 13 19-31 63-75 (77)
29 3na8_A Putative dihydrodipicol 23.5 40 0.0014 26.5 2.2 19 12-31 126-144 (315)
30 1w3i_A EDA, 2-keto-3-deoxy glu 23.0 35 0.0012 26.5 1.8 18 12-30 98-116 (293)
31 3h5d_A DHDPS, dihydrodipicolin 22.9 34 0.0012 26.9 1.7 18 12-30 110-127 (311)
32 3a5f_A Dihydrodipicolinate syn 22.8 26 0.00088 27.2 0.9 18 12-30 103-120 (291)
33 3fkr_A L-2-keto-3-deoxyarabona 22.5 43 0.0015 26.3 2.2 21 11-31 109-131 (309)
34 1ym0_B Fibrinotic enzyme compo 22.0 45 0.0016 16.2 1.4 11 5-15 17-27 (27)
35 3g1g_A GAG polyprotein, capsid 21.3 60 0.002 21.0 2.3 20 19-39 62-81 (87)
36 4dpp_A DHDPS 2, dihydrodipicol 21.2 36 0.0012 27.7 1.5 19 11-30 160-178 (360)
37 2jv2_A Putative uncharacterize 21.0 51 0.0018 20.9 1.9 28 23-51 27-54 (83)
38 3qze_A DHDPS, dihydrodipicolin 20.8 40 0.0014 26.5 1.7 19 12-31 125-143 (314)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=3.3e-56 Score=336.38 Aligned_cols=148 Identities=53% Similarity=1.092 Sum_probs=124.2
Q ss_pred CCCCCCCCCceecCCHHHHHHHHHHHHHcCCCCCCCeeEeccCCCCCCCCCCccccCCceEEEEEcccCCCCCCCCCCcc
Q 040747 7 HDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNR 86 (157)
Q Consensus 7 ~~~~~lP~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~~~~~~~~wyFF~~~~~k~~~g~R~~r 86 (157)
..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||++|||+||+.+..++.+|||||++++|+++|.|.+|
T Consensus 10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR 89 (174)
T 3ulx_A 10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR 89 (174)
T ss_dssp CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence 35779999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred cCccceeeecCCCCceEEecCCeEE---------ecCCCCCCCcceEEEEEeeCCCCCCC-----CCCCCCCEEEEEEEe
Q 040747 87 VTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIKTEWIMHEYRLIEPHPNN-----DSSKLDDWILCRISQ 152 (157)
Q Consensus 87 ~~~~G~Wk~~~~g~~~~i~~~g~~~---------~g~~~~~~kt~W~M~EY~l~~~~~~~-----~~~~~~~~VLCkI~~ 152 (157)
++++|+||+ +|+++.|...|..+ .|+++++.||+|+||||+|....... +....++|||||||+
T Consensus 90 ~t~~G~Wka--tG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~ 167 (174)
T 3ulx_A 90 AAGNGYWKA--TGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN 167 (174)
T ss_dssp EETTEEEEE--CSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred ecCCceEcc--CCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence 999999999 88999887665332 67888999999999999999864321 224568999999999
Q ss_pred ccCC
Q 040747 153 CRGS 156 (157)
Q Consensus 153 k~~~ 156 (157)
|++.
T Consensus 168 K~~~ 171 (174)
T 3ulx_A 168 KKNE 171 (174)
T ss_dssp SCC-
T ss_pred cCCC
Confidence 9864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=2.5e-56 Score=336.62 Aligned_cols=148 Identities=62% Similarity=1.168 Sum_probs=121.3
Q ss_pred CCCCCCCCCceecCCHHHHHHHHHHHHHcCCCCCCCeeEeccCCCCCCCCCCccccCCceEEEEEcccCCCCCCCCCCcc
Q 040747 7 HDLISLPPCFRFSPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSKALFGDYEWFFFSPMDRKNPEASEPNR 86 (157)
Q Consensus 7 ~~~~~lP~G~rF~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~~~~~~~~wyFF~~~~~k~~~g~R~~r 86 (157)
..++.|||||||+|||||||.|||++|+.|.+++.++|+++|||.+|||+||+.+..++++|||||++++++++|.|.+|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~R 91 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPNR 91 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CCE
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCcccc
Confidence 45789999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred cCccceeeecCCCCceEEecCCeEE---------ecCCCCCCCcceEEEEEeeCCCCCCCCCCCCCCEEEEEEEeccCC
Q 040747 87 VTGVGYWEDAGSGTDKIITTAGRKL---------AGNAPNGIKTEWIMHEYRLIEPHPNNDSSKLDDWILCRISQCRGS 156 (157)
Q Consensus 87 ~~~~G~Wk~~~~g~~~~i~~~g~~~---------~g~~~~~~kt~W~M~EY~l~~~~~~~~~~~~~~~VLCkI~~k~~~ 156 (157)
++++|+||+ +|+++.|...|..+ .|+++++.||+|+||||+|.......+....++|||||||+|+.+
T Consensus 92 ~t~~G~Wk~--tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~ 168 (171)
T 1ut7_A 92 VAGSGYWKA--TGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS 168 (171)
T ss_dssp EETTEEEEE--EEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred cCCCCEEec--cCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence 999999999 88888887766443 678889999999999999998754333356789999999999875
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=52.09 E-value=8 Score=24.37 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=22.9
Q ss_pred CCCCceecC-CHHHHHHHHHHHHHcCCCCC
Q 040747 12 LPPCFRFSP-TDEELLVLFLRRKVAGRRLS 40 (157)
Q Consensus 12 lP~G~rF~P-tDeELi~~yL~~k~~g~~~~ 40 (157)
.|.|+.|.. |++||-. ||..++...-+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 367899998 9999965 999999877653
No 4
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=48.97 E-value=23 Score=23.13 Aligned_cols=38 Identities=26% Similarity=0.313 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCCeeEeccCCCCCCCCCCcc
Q 040747 19 SPTDEELLVLFLRRKVAGRRLSINFITEIDFYKFEPWELPSK 60 (157)
Q Consensus 19 ~PtDeELi~~yL~~k~~g~~~~~~~I~~~Dvy~~~P~~Lp~~ 60 (157)
|-|-.||++.-...-..|+|+|. +.|+-...|.++|+.
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~----D~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPD----DADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCC----GGGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCC----chhhhhcCCccchHH
Confidence 56888999988888899999986 468888899999975
No 5
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=44.02 E-value=11 Score=28.84 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=20.4
Q ss_pred cCCCCCCCCCCceecCCHHHHHHHHHHHHHc
Q 040747 5 FDHDLISLPPCFRFSPTDEELLVLFLRRKVA 35 (157)
Q Consensus 5 ~~~~~~~lP~G~rF~PtDeELi~~yL~~k~~ 35 (157)
.+..-+.-+-|..+.||++|+|.|-..+++.
T Consensus 148 ~n~AAl~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 148 ENPAAMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp TCTTSCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred CCccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3444455566999999999999976555443
No 6
>3dct_B Nuclear receptor coactivator 1; FXR, GW4064, alpha-helical sandwich, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: 064; 2.50A {Homo sapiens} PDB: 3dcu_B* 3hc5_B* 3hc6_B* 3rvf_B*
Probab=33.37 E-value=20 Score=16.79 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHH
Q 040747 19 SPTDEELLVLFLRR 32 (157)
Q Consensus 19 ~PtDeELi~~yL~~ 32 (157)
.+.|.+|+. ||..
T Consensus 2 e~kdhqllr-ylld 14 (21)
T 3dct_B 2 ESKDHQLLR-YLLD 14 (26)
T ss_pred chhHHHHHH-HHHc
Confidence 367889987 5543
No 7
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=29.33 E-value=18 Score=26.30 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=19.0
Q ss_pred eEeccCCCCCCCCC--Ccc--ccCCceEEEEEcccC
Q 040747 44 ITEIDFYKFEPWEL--PSK--ALFGDYEWFFFSPMD 75 (157)
Q Consensus 44 I~~~Dvy~~~P~~L--p~~--~~~~~~~wyFF~~~~ 75 (157)
+.++|||++.|..- |-. +..=.-.+|||.++.
T Consensus 119 l~dC~IYsY~Pd~~~DPf~e~g~lWSfnYFFyNKkl 154 (164)
T 3nr5_A 119 LAECDIYSYNPDLDSDPFGEDGSLWSFNYFFYNKRL 154 (164)
T ss_dssp GGGCEEEEECCCGGGCTTCSCCCSCEEEEEEEETTT
T ss_pred ccCCeEEEEcCCCCCCCCCCCCceeeeeeeEEecCc
Confidence 56789999999832 321 111134577777653
No 8
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=28.13 E-value=24 Score=27.42 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=14.6
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+|| |.|.||+++|+.||-.
T Consensus 106 ~~P-~y~~~~~~~l~~~f~~ 124 (293)
T 1f6k_A 106 VTP-FYYKFSFPEIKHYYDT 124 (293)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 455 4488999999998753
No 9
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=28.12 E-value=24 Score=27.44 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=14.6
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+|| |.|.||+++|+.||-.
T Consensus 102 ~~P-~y~~~s~~~l~~~f~~ 120 (294)
T 2ehh_A 102 VVP-YYNKPTQRGLYEHFKT 120 (294)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 455 4488999999998853
No 10
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=27.92 E-value=24 Score=27.37 Aligned_cols=18 Identities=28% Similarity=0.516 Sum_probs=14.0
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 103 ~~P-~y~~~s~~~l~~~f~ 120 (292)
T 2ojp_A 103 VTP-YYNRPSQEGLYQHFK 120 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 448899999999774
No 11
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=27.75 E-value=25 Score=27.59 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=14.9
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+|| |.|.||+++|+.||-.
T Consensus 118 ~~P-~y~~~~~~~l~~~f~~ 136 (304)
T 3cpr_A 118 VTP-YYSKPSQEGLLAHFGA 136 (304)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 566 5588999999998753
No 12
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=27.36 E-value=27 Score=27.46 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=13.8
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+||- |.||+++|+.||-.
T Consensus 109 ~~P~--~~~s~~~l~~~f~~ 126 (313)
T 3dz1_A 109 APPP--SLRTDEQITTYFRQ 126 (313)
T ss_dssp CCCT--TCCSHHHHHHHHHH
T ss_pred CCCC--CCCCHHHHHHHHHH
Confidence 6664 56999999997753
No 13
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=27.15 E-value=26 Score=27.20 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=14.2
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 102 ITP-YYNKPTQEGLRKHFG 119 (289)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 448899999999874
No 14
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=27.06 E-value=30 Score=27.00 Aligned_cols=18 Identities=22% Similarity=0.349 Sum_probs=14.2
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 102 VAG-YYNRPSQEGLYQHFK 119 (297)
T ss_dssp CCC-TTTCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 456 448899999999874
No 15
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=27.01 E-value=32 Score=26.68 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=14.4
Q ss_pred CCCCceec-CCHHHHHHHHHH
Q 040747 12 LPPCFRFS-PTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~-PtDeELi~~yL~ 31 (157)
+||- .|. ||+++|+.||-.
T Consensus 98 ~~P~-y~~~~s~~~l~~~f~~ 117 (288)
T 2nuw_A 98 HSPY-YFPRLPEKFLAKYYEE 117 (288)
T ss_dssp CCCC-SSCSCCHHHHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHHH
Confidence 4554 477 999999998753
No 16
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=26.86 E-value=26 Score=27.42 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=14.6
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+||- .|.||+++|+.||-.
T Consensus 113 ~~P~-y~~~s~~~l~~~f~~ 131 (303)
T 2wkj_A 113 VTPF-YYPFSFEEHCDHYRA 131 (303)
T ss_dssp ECCC-SSCCCHHHHHHHHHH
T ss_pred cCCC-CCCCCHHHHHHHHHH
Confidence 4554 488999999998753
No 17
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=26.23 E-value=27 Score=27.09 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=14.8
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+|| |.|.||+++|+.||-.
T Consensus 102 ~~P-~y~~~s~~~l~~~f~~ 120 (292)
T 2vc6_A 102 VSP-YYNKPTQEGIYQHFKA 120 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHHH
Confidence 455 4588999999998853
No 18
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=26.19 E-value=33 Score=26.97 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=14.2
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 113 ~~P-~y~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 113 HQP-VHPYITDAGAVEYYR 130 (314)
T ss_dssp CCC-CCSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 458999999999874
No 19
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=26.03 E-value=34 Score=26.60 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=14.3
Q ss_pred CCCCceec-CCHHHHHHHHHH
Q 040747 12 LPPCFRFS-PTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~-PtDeELi~~yL~ 31 (157)
+||- .|. ||+++|+.||-.
T Consensus 105 ~~P~-y~~~~s~~~l~~~f~~ 124 (294)
T 3b4u_A 105 APPS-YFKNVSDDGLFAWFSA 124 (294)
T ss_dssp CCCC-SSCSCCHHHHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHHH
Confidence 4554 477 999999998753
No 20
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=25.82 E-value=28 Score=27.28 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=14.0
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 114 ~~P-~y~~~s~~~l~~~f~ 131 (306)
T 1o5k_A 114 VTP-YYNKPTQEGLYQHYK 131 (306)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 448899999999774
No 21
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=24.87 E-value=30 Score=27.70 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=14.1
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 133 ~~P-~Y~~~s~~~l~~~f~ 150 (343)
T 2v9d_A 133 INP-YYWKVSEANLIRYFE 150 (343)
T ss_dssp ECC-SSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 455 448899999999774
No 22
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=24.70 E-value=36 Score=26.28 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=14.5
Q ss_pred CCCCceec-CCHHHHHHHHHH
Q 040747 12 LPPCFRFS-PTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~-PtDeELi~~yL~ 31 (157)
+||- .|. ||+++|+.||-.
T Consensus 97 ~~P~-y~~~~s~~~l~~~f~~ 116 (286)
T 2r91_A 97 LPPY-YFPRLSERQIAKYFRD 116 (286)
T ss_dssp CCSC-SSTTCCHHHHHHHHHH
T ss_pred cCCc-CCCCCCHHHHHHHHHH
Confidence 4564 478 999999998753
No 23
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=24.66 E-value=30 Score=27.29 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=14.2
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 124 ~~P-~y~~~~~~~l~~~f~ 141 (315)
T 3si9_A 124 VTP-YYNRPNQRGLYTHFS 141 (315)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHH
Confidence 556 448899999999775
No 24
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=24.61 E-value=37 Score=26.69 Aligned_cols=19 Identities=16% Similarity=0.030 Sum_probs=14.6
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+||-| +.||+++|+.||-.
T Consensus 113 ~~P~y-~~~s~~~l~~~f~~ 131 (316)
T 3e96_A 113 HMPIH-PYVTAGGVYAYFRD 131 (316)
T ss_dssp CCCCC-SCCCHHHHHHHHHH
T ss_pred cCCCC-CCCCHHHHHHHHHH
Confidence 56644 88999999997753
No 25
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=24.39 E-value=31 Score=26.96 Aligned_cols=18 Identities=22% Similarity=0.503 Sum_probs=14.2
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 114 ~~P-~y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 114 VAP-YYNKPSQEGMYQHFK 131 (301)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 458899999999774
No 26
>2c4b_A Barnase mcoeeti fusion; squash inhibitor, hybrid microprotein, fusion protein, ribonuclease, endonuclease, hydrolase, nuclease; HET: 2PE MES; 1.3A {Bacillus amyloliquefaciens} SCOP: d.1.1.2 g.3.2.1 PDB: 1b3s_A 2kf3_A 2kf4_A 2kf5_A 2kf6_A 1a2p_A 1b27_A 1b2x_A 1bgs_A 1bni_A 1bnj_A 1bnr_A 1brn_L* 1brs_A 1fw7_A 1x1u_A 1x1w_A 1x1x_A 1yvs_A 3kch_A ...
Probab=24.30 E-value=69 Score=22.63 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCCCeeEe--ccCCCCCCCC
Q 040747 21 TDEELLVLFLRRKVAGRRLSINFITE--IDFYKFEPWE 56 (157)
Q Consensus 21 tDeELi~~yL~~k~~g~~~~~~~I~~--~Dvy~~~P~~ 56 (157)
|+.+-|..||.. ...||..+|.. ++-.+.+|.+
T Consensus 4 t~~~~V~~yl~~---~~~LP~~yiTK~eA~~~GW~p~k 38 (143)
T 2c4b_A 4 NTFDGVADYLQT---YHKLPDNYITKSEAQALGWVASK 38 (143)
T ss_dssp CSHHHHHHHHHH---HSSCCTTEECHHHHHHTTCCGGG
T ss_pred cchhHHHHHHHH---hCcCCcccccHHHHHHcCCCCCc
Confidence 444555668877 46778888874 6777888854
No 27
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=24.30 E-value=38 Score=26.94 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=14.5
Q ss_pred CCCCCceecCCHHHHHHHHH
Q 040747 11 SLPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 11 ~lP~G~rF~PtDeELi~~yL 30 (157)
-+||- .|.||+++|+.||-
T Consensus 135 v~~P~-Y~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 135 LAPVS-YTPLTQEEAYHHFA 153 (332)
T ss_dssp ECCCC-SSCCCHHHHHHHHH
T ss_pred ECCCC-CCCCCHHHHHHHHH
Confidence 35664 48899999999874
No 28
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=24.01 E-value=30 Score=21.89 Aligned_cols=13 Identities=23% Similarity=0.266 Sum_probs=10.0
Q ss_pred cCCHHHHHHHHHH
Q 040747 19 SPTDEELLVLFLR 31 (157)
Q Consensus 19 ~PtDeELi~~yL~ 31 (157)
.|+.+|||.|.|.
T Consensus 63 ~~~~~e~ik~~~~ 75 (77)
T 3g21_A 63 LTTPGEIIKYVLD 75 (77)
T ss_dssp CCSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHc
Confidence 4788999996554
No 29
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=23.54 E-value=40 Score=26.55 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=14.3
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+|| |.|.||+++|+.||-.
T Consensus 126 ~~P-~y~~~s~~~l~~~f~~ 144 (315)
T 3na8_A 126 LPI-SYWKLNEAEVFQHYRA 144 (315)
T ss_dssp CCC-CSSCCCHHHHHHHHHH
T ss_pred CCC-CCCCCCHHHHHHHHHH
Confidence 455 4478999999997753
No 30
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=23.01 E-value=35 Score=26.48 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=14.0
Q ss_pred CCCCceec-CCHHHHHHHHH
Q 040747 12 LPPCFRFS-PTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~-PtDeELi~~yL 30 (157)
+||- .|. ||+++|+.||-
T Consensus 98 ~~P~-y~~~~s~~~l~~~f~ 116 (293)
T 1w3i_A 98 YAPY-YYPRMSEKHLVKYFK 116 (293)
T ss_dssp ECCC-SCSSCCHHHHHHHHH
T ss_pred cCCC-CCCCCCHHHHHHHHH
Confidence 4554 477 99999999874
No 31
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=22.93 E-value=34 Score=26.89 Aligned_cols=18 Identities=22% Similarity=0.482 Sum_probs=13.8
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 110 ~~P-~y~~~s~~~l~~~f~ 127 (311)
T 3h5d_A 110 IVP-YYNKPSQEGMYQHFK 127 (311)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 458899999999764
No 32
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=22.84 E-value=26 Score=27.24 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=13.6
Q ss_pred CCCCceecCCHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL 30 (157)
+|| |.|.||+++|+.||-
T Consensus 103 ~~P-~y~~~s~~~l~~~f~ 120 (291)
T 3a5f_A 103 ITP-YYNKTTQKGLVKHFK 120 (291)
T ss_dssp ECC-CSSCCCHHHHHHHC-
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 448899999999774
No 33
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=22.51 E-value=43 Score=26.28 Aligned_cols=21 Identities=19% Similarity=0.643 Sum_probs=15.4
Q ss_pred CCCCCce--ecCCHHHHHHHHHH
Q 040747 11 SLPPCFR--FSPTDEELLVLFLR 31 (157)
Q Consensus 11 ~lP~G~r--F~PtDeELi~~yL~ 31 (157)
-+||-|- |.||+++|+.||-.
T Consensus 109 v~~Pyy~~~~~~s~~~l~~~f~~ 131 (309)
T 3fkr_A 109 AMPPYHGATFRVPEAQIFEFYAR 131 (309)
T ss_dssp ECCSCBTTTBCCCHHHHHHHHHH
T ss_pred EcCCCCccCCCCCHHHHHHHHHH
Confidence 3566332 89999999997753
No 34
>1ym0_B Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}
Probab=21.97 E-value=45 Score=16.23 Aligned_cols=11 Identities=36% Similarity=0.519 Sum_probs=8.1
Q ss_pred cCCCCCCCCCC
Q 040747 5 FDHDLISLPPC 15 (157)
Q Consensus 5 ~~~~~~~lP~G 15 (157)
-|+..+.||||
T Consensus 17 sdagdmelppg 27 (27)
T 1ym0_B 17 SDAGDMELPPG 27 (27)
T ss_dssp TTTTCCCCCCC
T ss_pred ccccccccCCC
Confidence 35667889987
No 35
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=21.29 E-value=60 Score=20.98 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=11.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCC
Q 040747 19 SPTDEELLVLFLRRKVAGRRL 39 (157)
Q Consensus 19 ~PtDeELi~~yL~~k~~g~~~ 39 (157)
.|+.+|||. |+..|..-.++
T Consensus 62 ~~~~~e~Ik-~~l~~~~~~~~ 81 (87)
T 3g1g_A 62 LTTPGEIIK-YVLDRQKTAPL 81 (87)
T ss_dssp CCSHHHHHH-HHHHHHC----
T ss_pred CCChHHHHH-HHHHHhhcCCc
Confidence 478899998 55555554444
No 36
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=21.22 E-value=36 Score=27.66 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.0
Q ss_pred CCCCCceecCCHHHHHHHHH
Q 040747 11 SLPPCFRFSPTDEELLVLFL 30 (157)
Q Consensus 11 ~lP~G~rF~PtDeELi~~yL 30 (157)
-+|| |.+.||+++|+.||-
T Consensus 160 vv~P-yY~k~sq~gl~~hf~ 178 (360)
T 4dpp_A 160 HINP-YYGKTSIEGLIAHFQ 178 (360)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred EcCC-CCCCCCHHHHHHHHH
Confidence 3566 668999999999774
No 37
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=21.03 E-value=51 Score=20.90 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCeeEeccCCC
Q 040747 23 EELLVLFLRRKVAGRRLSINFITEIDFYK 51 (157)
Q Consensus 23 eELi~~yL~~k~~g~~~~~~~I~~~Dvy~ 51 (157)
.++ ..||++++.|+|+...-+-.+++++
T Consensus 27 ~~~-~~~lk~~L~grPV~~GD~I~i~~~G 54 (83)
T 2jv2_A 27 PDF-VDVIRIKLQGKTVRTGDVIGISILG 54 (83)
T ss_dssp HHH-HHHHHHHHTTSEECTTCEEEEEETT
T ss_pred ccH-HHHHHHHHCCCCccCCCEEEEeeCC
Confidence 445 4699999999998764333355543
No 38
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=20.79 E-value=40 Score=26.52 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=14.3
Q ss_pred CCCCceecCCHHHHHHHHHH
Q 040747 12 LPPCFRFSPTDEELLVLFLR 31 (157)
Q Consensus 12 lP~G~rF~PtDeELi~~yL~ 31 (157)
+|| |.|.||+++|+.||-.
T Consensus 125 ~~P-~y~~~s~~~l~~~f~~ 143 (314)
T 3qze_A 125 VTP-YYNKPTQEGMYQHFRH 143 (314)
T ss_dssp ECC-CSSCCCHHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHHH
Confidence 455 4578999999997753
Done!