BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040748
(584 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 141/296 (47%), Gaps = 20/296 (6%)
Query: 252 DGTIMPPDGPESWLQKNSKRQWLVFY-KINELSLQGGGTIDGRGHKWWDLPCKPHKGING 310
DG+ + +G S+ K K + F K +++ G IDG G +WWD KG NG
Sbjct: 41 DGSTITFEGTTSFGYKEWKGPLIRFGGKDLTVTMADGAVIDGDGSRWWD-----SKGTNG 95
Query: 311 TTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPN- 369
+ P + + T + + IK++P NVH+ I N
Sbjct: 96 GKTK-----PKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSDGDDNG 149
Query: 370 ---TDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426
TDG I + GV I + + N DDC++I SG + TC GHG+SIGS+G +
Sbjct: 150 GHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVGGRD 208
Query: 427 SRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRN-PIIIDQYYCL 485
V N+T+ DS + S NGVRIKT +G VS IT+SNI ++ + + I+I+Q Y
Sbjct: 209 DNT-VKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYEN 267
Query: 486 TKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAK 541
++ + ++D+ + GT + + ++ C D C++ T S V+L K
Sbjct: 268 GSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDG-SCSDWTWSGVDLSGGK 322
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 102 bits (253), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/285 (29%), Positives = 142/285 (49%), Gaps = 31/285 (10%)
Query: 271 RQW---LVFYKINELSLQG--GGTIDGRGHKWWDLPCKPHKGING-TTSPGPCDSPIALR 324
++W L+ + +++ G G +ID +G +WWD KG NG T P +
Sbjct: 56 KEWEGPLISFSGTNININGASGHSIDCQGSRWWD-----SKGSNGGKTKP---------K 101
Query: 325 FFMSSNLT---VQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSP----NTDGIHIEN 377
FF + +L ++ L + ++P F ++ + + + I A NTD + +
Sbjct: 102 FFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGGHNTDAFDVGS 161
Query: 378 TNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVR 437
+ GV I + + N DDC++I SG ++ TC GHG+SIGS+G S V +T+
Sbjct: 162 STGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVGGR-SDNTVKTVTIS 219
Query: 438 DSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNV-RNPIIIDQYYCLTKDCTNKTSAV 496
+S I S+NGVRIKT G +G+VSG+T+S I ++N+ + I+I+Q Y T+ V
Sbjct: 220 NSKIVNSDNGVRIKTVSGATGSVSGVTYSGITLSNIAKYGIVIEQDYENGSPTGTPTNGV 279
Query: 497 YVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAK 541
++ + S I G+ ++ C+ C+N S V + K
Sbjct: 280 PITGLTLSKITGSVASSGTNVYILCASG-ACSNWKWSGVSVTGGK 323
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 104/213 (48%), Gaps = 24/213 (11%)
Query: 284 LQGGGTIDGRGH--------KWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQR 335
+ G GTIDG+G WW+L + ++P ++ S N T+
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAA------DAKVKKLKQNTPRLIQINKSKNFTLYN 166
Query: 336 LRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCV 395
+ + +SP FH F + I P+ + NTDGI ++ + I S I+ GDD V
Sbjct: 167 VSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNV 226
Query: 396 SIGSGCYDVDIRNITC-----GPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRI 450
+I + + RNI+ G GHG+SIGS V N+TV D + + NG+RI
Sbjct: 227 AIKAYKGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRI 281
Query: 451 KTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYY 483
K+ + +G V+G+ +SN+ M NV PI+ID Y
Sbjct: 282 KSDKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 36/268 (13%)
Query: 287 GGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNL---TVQRLRIKDSPQ 343
G I+ G +WWD KG +G P +FF + L ++ L IK++P
Sbjct: 104 GHLINCDGARWWD-----GKGTSGKKKP---------KFFYAHGLDSSSITGLNIKNTPL 149
Query: 344 FHFRFDNCKNVHIESIHITAPALS---------PNTDGIHIENTNGVEIYNSVISNGDDC 394
F +V I T ++ NTD + N+ GV I + N DDC
Sbjct: 150 MAF------SVQANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDC 203
Query: 395 VSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQ 454
+++ SG ++ TC GHG+SIGS+G+ S V N+T+ S + S N VRIKT
Sbjct: 204 LAVNSG-ENIWFTGGTCIGGHGLSIGSVGDR-SNNVVKNVTIEHSTVSNSENAVRIKTIS 261
Query: 455 GGSGAVSGITFSNIHMNNVRN-PIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIR 513
G +G+VS IT+SNI M+ + + ++I Q Y K T+ V + D+ ++ G+ D
Sbjct: 262 GATGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSG 321
Query: 514 SPPMHFACSDTVPCTNLTLSEVELLPAK 541
+ ++ C + C++ T +V++ K
Sbjct: 322 ATEIYLLCG-SGSCSDWTWDDVKVTGGK 348
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 93/369 (25%), Positives = 161/369 (43%), Gaps = 39/369 (10%)
Query: 191 DVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQ 250
++ +GAV D +D A W +AC K ++++P G + TG +I Q
Sbjct: 22 NILSYGAVADNSTDVGPAITSAW-AAC-KSGGLVYIPSGNYALNTWVTLTGGSATAI--Q 77
Query: 251 VDGTIM-PPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGIN 309
+DG I + + + +F ++ ++QG G + +G
Sbjct: 78 LDGIIYRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYV------------YHAEGTY 125
Query: 310 GTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPN 369
G LR ++ +V + + D+P FHF D C + + ++ I
Sbjct: 126 GAR---------ILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGG 175
Query: 370 TDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRA 429
DGI + +N + +++ ++N D+CV++ S ++ + +I C G ++GSLG
Sbjct: 176 LDGIDVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD-- 232
Query: 430 CVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDC 489
V++I R+ SN IK+ GGSG VS + N + + ID Y+
Sbjct: 233 -VTDIVYRNVYTWSSNQMYMIKS-NGGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV 290
Query: 490 TNKTSAVYVSDILYSNIKGTY--DIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSD 547
V +++I N KGT PP+ CSDT PCT+LTL ++ + G S+
Sbjct: 291 AGD--GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGS--SE 346
Query: 548 PF-CWNAYG 555
+ C +AYG
Sbjct: 347 LYLCRSAYG 355
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 31/284 (10%)
Query: 271 RQW---LVFYKINELSLQG--GGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRF 325
++W L+ ++L++ G G +I+G G +WWD G G T P +F
Sbjct: 60 KEWSGPLISVSGSDLTITGASGHSINGDGSRWWD----GEGGNGGKTKP---------KF 106
Query: 326 FMSSNLT---VQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPN----TDGIHIENT 378
F + +LT + L+I +SP F + ++ I I N TD I +
Sbjct: 107 FAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTS 166
Query: 379 NGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRD 438
V I + + N DDCV++ SG ++ C GHG+SIGS+G S V N+T D
Sbjct: 167 TYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGR-SDNTVKNVTFVD 224
Query: 439 SVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNV-RNPIIIDQYYCLTKDCTNKTSAVY 497
S I S+NGVRIKT +G+VS +T+ +I + ++ + I++ Q Y T + T+ V
Sbjct: 225 STIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTS--STPTTGVP 282
Query: 498 VSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAK 541
++D + N+ G+ + +C + C++ T ++V + K
Sbjct: 283 ITDFVLDNVHGSVVSSGTNILISCG-SGSCSDWTWTDVSVSGGK 325
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 119/260 (45%), Gaps = 23/260 (8%)
Query: 287 GGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHF 346
G IDG G +WD KG N ++ P D I ++ + N + L I++ P F
Sbjct: 78 GHVIDGNGQAYWD-----GKGSNSNSNQKP-DHFIVVQK-TTGNSKITNLNIQNWPVHCF 130
Query: 347 RFDNCKNVHIESIHITAPA------------LSPNTDGIHIENTNGVEIYNSVISNGDDC 394
+ I + + A + NTDG I +++ V + N+ + N DDC
Sbjct: 131 DITGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDC 190
Query: 395 VSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQ 454
V++ SG ++ + N+ C GHG+SIGS+G S V + S + S NG RIK+
Sbjct: 191 VAVTSGT-NIVVSNMYCSGGHGLSIGSVGGK-SDNVVDGVQFLSSQVVNSQNGCRIKSNS 248
Query: 455 GGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNK-TSAVYVSDILYSNIKGTYDIR 513
G +G ++ +T+ NI + N+ + Q L T K T+ V +S+I + + GT
Sbjct: 249 GATGTINNVTYQNIALTNISTYGVDVQQDYLNGGPTGKPTNGVKISNIKFIKVTGTVASS 308
Query: 514 SPPMHFACSDTVPCTNLTLS 533
+ C D C+ T S
Sbjct: 309 AQDWFILCGDG-SCSGFTFS 327
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 290 IDGRGHKWWDLPCKPHKGIN-GTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSP------ 342
DG G +WD KG N GT P P + + T ++ + +SP
Sbjct: 77 FDGNGALYWD-----GKGTNNGTHKPHPF-------LKIKGSGTYKKFEVLNSPAQAISV 124
Query: 343 ---QFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGS 399
H D + ++ L NTDG + N V I N ++ N DDC++I
Sbjct: 125 GPTDAHLTLDG---ITVDDFAGDTKNLGHNTDGFDVS-ANNVTIQNCIVKNQDDCIAIND 180
Query: 400 GCYDVDIRNITCGPGHGISIGSL--GNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGS 457
G ++ N C GHGISIGS+ G H VSN+ ++ + + S GVRIK + +
Sbjct: 181 G-NNIRFENNQCSGGHGISIGSIATGKH-----VSNVVIKGNTVTRSMYGVRIKAQRTAT 234
Query: 458 GA-VSGITF-SNIHMNNVRNPIIIDQYY 483
A VSG+T+ +N + ++I Q Y
Sbjct: 235 SASVSGVTYDANTISGIAKYGVLISQSY 262
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 145/382 (37%), Gaps = 76/382 (19%)
Query: 190 IDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGP--CQGSI 247
+++ FGA GDG +D +E+FK + ++ + VP G TGP + +I
Sbjct: 28 VNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEG-------VFLTGPIHLKSNI 80
Query: 248 VFQVDGTIMPPDGPESWLQKNSKR-QWLVFYKINEL---------SLQGGGTIDGRG--H 295
V GTI PE +L R + + Y + L ++ G G +DG
Sbjct: 81 ELHVKGTIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNE 140
Query: 296 KWW------------DLP-----CKPHKGINGTTSP--------GPCDSPIALRFFMSSN 330
WW LP K K + +P G P ++F+ N
Sbjct: 141 HWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRN 200
Query: 331 LTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISN 390
+ V+ ++I +SP + +NV I +I I++ PN DGI E+ + I
Sbjct: 201 VLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG--PNNDGIDPESCKYMLIEKCRFDT 258
Query: 391 GDDCVSIGSGCYDVDIRNITCGPGH---------------GISIGSLGNHNSRACVSNIT 435
GDD V I SG D D R I + G+ IGS V N+
Sbjct: 259 GDDSVVIKSG-RDADGRRIGVPSEYILVRDNLVISQASHGGLVIGS----EMSGGVRNVV 313
Query: 436 VRDSVIKVSNNGVRIKTWQGGSGAVSGITF-SNIHMNNVRNPIIIDQYYCLTKDCTNKTS 494
R++V +R+KT G + I F N+ +N I I+ Y D
Sbjct: 314 ARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRY----DNEEGEY 369
Query: 495 AVYVSDILYSNIK---GTYDIR 513
V + N+K G Y +R
Sbjct: 370 LPVVRSVFVKNLKATGGKYAVR 391
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 17/150 (11%)
Query: 342 PQFH--FRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGS 399
P FH +N V IH T A N DGI N+ V ++N+ GDDC++ +
Sbjct: 352 PAFHGIMNLENHNVVANGLIHQTYDA--NNGDGIEFGNSQNVMVFNNFFDTGDDCINFAA 409
Query: 400 GCYDVD----------IRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVR 449
G + + N GHG + G+H A + +I ++V+ +++ G+R
Sbjct: 410 GTGEKAQEQEPMKGAWLFNNYFRMGHGAIV--TGSHTG-AWIEDILAENNVMYLTDIGLR 466
Query: 450 IKTWQGGSGAVSGITFSNIHMNNVRNPIII 479
K+ G +TF N M ++ +++
Sbjct: 467 AKSTSTIGGGARNVTFRNNAMRDLAKQVMV 496
>pdb|3GQ7|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment
pdb|3GQ8|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With
2-(N-Cyclohexylamino)ethane Sulfonic Acid (Ches)
pdb|3GQ9|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In An Apo Form
pdb|3GQA|A Chain A, Crystal Structure Of The Bacteriophage Phi29 Gene Product
12 N- Terminal Fragment In Complex With Cobalt Ions
Length = 609
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 13/68 (19%)
Query: 190 IDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMI-------QSTIFTGP 242
+ V+ +GA GDG++DD AF + A + F V +VPYG +FM+ +T+ TG
Sbjct: 23 VSVKTYGAKGDGVTDDIRAF----EKAIESGFPV-YVPYG-TFMVSRGIKLPSNTVLTGA 76
Query: 243 CQGSIVFQ 250
+ + V +
Sbjct: 77 GKRNAVIR 84
>pdb|3SUC|A Chain A, Crystal Structure Of The Pre-Mature Bacteriophage Phi29
Gene Product 12
Length = 772
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 13/68 (19%)
Query: 190 IDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMI-------QSTIFTGP 242
+ V+ +GA GDG++DD AF + A + F V +VPYG +FM+ +T+ TG
Sbjct: 23 VSVKTYGAKGDGVTDDIRAF----EKAIESGFPV-YVPYG-TFMVSRGIKLPSNTVLTGA 76
Query: 243 CQGSIVFQ 250
+ + V +
Sbjct: 77 GKRNAVIR 84
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|B Chain B, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|C Chain C, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
pdb|3L0G|D Chain D, Crystal Structure Of Nicotinate-Nucleotide
Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a
Resolution
Length = 300
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 18/103 (17%)
Query: 328 SSNLTVQRLRIKDSPQFHFRFDNCKNVHI----ESIHITAPALSPNTDGIHIENTNGVEI 383
S L +QRLR N KN +I ++I +LS N D I ++N + EI
Sbjct: 193 SITLAIQRLR-----------KNLKNEYIAIECDNISQVEESLSNNVDMILLDNMSISEI 241
Query: 384 YNSV-ISNGDDCVSIGSGCYDV-DIRNITCGPGHGISIGSLGN 424
+V I NG + + SGC ++ ++RNI ISIG + N
Sbjct: 242 KKAVDIVNGKSVLEV-SGCVNIRNVRNIALTGVDYISIGCITN 283
>pdb|3TGH|A Chain A, Gap50 The Anchor In The Inner Membrane Complex Of
Plasmodium
Length = 342
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 403 DVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAV 460
D D+ +ITCG G +S G G NS++ + + V ++SNNG+ K G V
Sbjct: 242 DNDMAHITCGSG-SMSQGKSGMKNSKSLFFSSDIGFCVHELSNNGIVTKFVSSKKGEV 298
>pdb|2PYG|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYG|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module
pdb|2PYH|A Chain A, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
pdb|2PYH|B Chain B, Azotobacter Vinelandii Mannuronan C-5 Epimerase Alge4
A-Module Complexed With Mannuronan Trisaccharide
Length = 377
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 192 VRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYG 229
V+ FGA+GDG+SDD + + D+A +++P G
Sbjct: 5 VKDFGALGDGVSDDRASIQAAIDAAYAAGGGTVYLPAG 42
>pdb|3PET|A Chain A, Crystal Structure Of A Putative Adhesin (Bf0245) From
Bacteroides Fragilis Nctc 9343 At 2.07 A Resolution
pdb|3PET|B Chain B, Crystal Structure Of A Putative Adhesin (Bf0245) From
Bacteroides Fragilis Nctc 9343 At 2.07 A Resolution
Length = 221
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 317 CDSPIALRFFMSSNLT-VQRLRIKDSPQFHFRFDNCKNVH---IESIHITAPALSPNTDG 372
D L+ + N+ + ++ +KD+ F D K V I IT+P L +G
Sbjct: 38 TDGKTDLQIYGPDNIVALIQVAVKDNTLF-LSIDKSKKVRNFKKXKITITSPTL----NG 92
Query: 373 IHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITC 411
I + V I N + ++ D S G G +VDI+++TC
Sbjct: 93 ISFKGVGDVHIENGLTTDNLDIESKGVG--NVDIQSLTC 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,169,901
Number of Sequences: 62578
Number of extensions: 763008
Number of successful extensions: 1405
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1367
Number of HSP's gapped (non-prelim): 22
length of query: 584
length of database: 14,973,337
effective HSP length: 104
effective length of query: 480
effective length of database: 8,465,225
effective search space: 4063308000
effective search space used: 4063308000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)