Query 040748
Match_columns 584
No_of_seqs 308 out of 1786
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:24:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02793 Probable polygalactur 100.0 1.1E-71 2.3E-76 603.1 45.7 382 187-579 50-433 (443)
2 PLN02218 polygalacturonase ADP 100.0 1.2E-68 2.6E-73 577.1 42.3 361 187-563 65-428 (431)
3 PLN03003 Probable polygalactur 100.0 4.3E-68 9.3E-73 571.9 42.2 366 187-572 21-393 (456)
4 PLN02155 polygalacturonase 100.0 1.3E-67 2.8E-72 563.2 42.7 366 187-569 25-393 (394)
5 PLN03010 polygalacturonase 100.0 6.6E-67 1.4E-71 559.2 43.5 356 187-568 44-403 (409)
6 PLN02188 polygalacturonase/gly 100.0 1.1E-65 2.5E-70 550.4 43.8 367 187-568 34-404 (404)
7 PF00295 Glyco_hydro_28: Glyco 100.0 9.4E-52 2E-56 434.3 28.5 319 221-557 6-324 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 3.2E-39 7E-44 352.6 28.7 279 187-480 80-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 4.7E-22 1E-26 212.1 22.7 172 187-397 35-208 (455)
10 PF12708 Pectate_lyase_3: Pect 99.8 7.8E-20 1.7E-24 179.8 17.1 213 189-448 1-224 (225)
11 PLN03003 Probable polygalactur 99.8 1.8E-17 3.8E-22 179.9 26.8 217 321-563 105-360 (456)
12 PLN02218 polygalacturonase ADP 99.8 2.3E-17 5.1E-22 179.0 26.9 195 322-541 149-384 (431)
13 PLN02793 Probable polygalactur 99.8 3.5E-17 7.5E-22 178.4 28.2 222 244-511 142-397 (443)
14 PLN02188 polygalacturonase/gly 99.8 4.5E-17 9.8E-22 175.6 27.5 224 244-511 121-377 (404)
15 PLN03010 polygalacturonase 99.8 9.8E-17 2.1E-21 172.9 28.2 206 321-552 131-360 (409)
16 PLN02155 polygalacturonase 99.8 3.4E-16 7.5E-21 168.2 27.6 217 322-563 108-366 (394)
17 PF00295 Glyco_hydro_28: Glyco 99.7 7.7E-17 1.7E-21 170.0 20.8 197 269-510 90-310 (326)
18 PF03718 Glyco_hydro_49: Glyco 99.7 1.7E-14 3.7E-19 155.8 27.3 273 222-541 233-555 (582)
19 TIGR03805 beta_helix_1 paralle 99.6 1.4E-13 2.9E-18 144.6 20.2 138 325-472 59-202 (314)
20 COG5434 PGU1 Endopygalactoruna 99.3 3.1E-11 6.6E-16 133.5 15.4 154 342-511 237-398 (542)
21 TIGR03805 beta_helix_1 paralle 98.8 3.8E-07 8.2E-12 96.1 20.8 228 209-482 1-252 (314)
22 PF13229 Beta_helix: Right han 98.6 3.4E-07 7.4E-12 84.3 11.5 138 323-479 3-144 (158)
23 PF12541 DUF3737: Protein of u 98.5 2.1E-06 4.6E-11 86.6 12.8 122 324-473 93-225 (277)
24 COG3866 PelB Pectate lyase [Ca 98.4 1E-05 2.2E-10 83.0 16.6 130 323-452 95-240 (345)
25 PF12541 DUF3737: Protein of u 98.4 1.1E-06 2.3E-11 88.7 8.9 100 324-450 132-231 (277)
26 PF13229 Beta_helix: Right han 98.3 6.3E-06 1.4E-10 75.9 12.3 130 322-470 25-158 (158)
27 PF05048 NosD: Periplasmic cop 98.3 1.4E-05 3E-10 80.3 14.6 133 323-478 16-150 (236)
28 TIGR03808 RR_plus_rpt_1 twin-a 98.3 9.5E-06 2.1E-10 88.0 13.6 146 322-480 108-291 (455)
29 PF05048 NosD: Periplasmic cop 98.3 2.3E-05 4.9E-10 78.8 15.4 114 322-451 37-152 (236)
30 smart00656 Amb_all Amb_all dom 98.2 6.7E-05 1.5E-09 73.6 16.0 143 344-506 32-189 (190)
31 PRK10123 wcaM putative colanic 98.1 0.00014 2.9E-09 74.4 17.4 56 187-258 32-91 (464)
32 COG3866 PelB Pectate lyase [Ca 98.1 0.00029 6.2E-09 72.6 19.2 160 274-478 95-281 (345)
33 PF03718 Glyco_hydro_49: Glyco 98.1 3.4E-05 7.4E-10 84.7 12.7 177 345-542 322-517 (582)
34 PF14592 Chondroitinas_B: Chon 98.0 0.00038 8.3E-09 75.5 19.8 26 205-233 3-28 (425)
35 PF07602 DUF1565: Protein of u 97.9 0.00036 7.9E-09 71.0 15.8 169 205-452 14-196 (246)
36 PF00544 Pec_lyase_C: Pectate 97.8 0.00016 3.6E-09 71.4 11.3 112 329-444 21-158 (200)
37 smart00656 Amb_all Amb_all dom 97.7 0.0013 2.9E-08 64.5 16.0 134 323-473 34-189 (190)
38 PF12708 Pectate_lyase_3: Pect 97.7 0.00076 1.7E-08 66.1 14.2 122 332-477 95-224 (225)
39 COG3420 NosD Nitrous oxidase a 97.7 0.0058 1.3E-07 64.1 20.0 116 326-452 104-223 (408)
40 PRK10531 acyl-CoA thioesterase 97.6 0.0053 1.1E-07 66.9 19.5 52 198-253 87-141 (422)
41 PLN02665 pectinesterase family 97.5 0.0083 1.8E-07 64.5 20.1 203 205-472 79-297 (366)
42 PLN02480 Probable pectinestera 97.5 0.0066 1.4E-07 64.8 19.0 81 324-413 127-217 (343)
43 PLN02682 pectinesterase family 97.5 0.012 2.6E-07 63.4 20.7 46 205-253 81-128 (369)
44 PLN02773 pectinesterase 97.5 0.0085 1.8E-07 63.3 18.7 50 200-253 12-63 (317)
45 PLN02170 probable pectinestera 97.4 0.015 3.2E-07 65.2 20.9 208 200-472 232-451 (529)
46 PLN02708 Probable pectinestera 97.4 0.0066 1.4E-07 68.8 18.3 50 200-253 248-300 (553)
47 PLN02506 putative pectinestera 97.2 0.012 2.6E-07 66.3 17.8 153 200-412 239-398 (537)
48 PLN02468 putative pectinestera 97.2 0.017 3.8E-07 65.6 18.8 207 205-472 269-489 (565)
49 PLN02484 probable pectinestera 97.2 0.016 3.5E-07 66.0 18.5 184 200-444 279-475 (587)
50 PLN02301 pectinesterase/pectin 97.2 0.019 4.1E-07 65.0 18.8 183 200-444 243-438 (548)
51 PLN02713 Probable pectinestera 97.2 0.016 3.5E-07 65.8 18.2 208 205-473 261-489 (566)
52 PLN02916 pectinesterase family 97.2 0.018 4E-07 64.2 18.2 148 205-412 198-356 (502)
53 PLN02201 probable pectinestera 97.2 0.026 5.7E-07 63.4 19.4 153 200-413 213-373 (520)
54 PLN02313 Pectinesterase/pectin 97.2 0.021 4.5E-07 65.2 18.9 183 200-444 282-477 (587)
55 PLN02416 probable pectinestera 97.2 0.021 4.4E-07 64.6 18.7 179 205-444 241-432 (541)
56 PLN02995 Probable pectinestera 97.2 0.023 5.1E-07 64.2 19.0 209 205-473 234-461 (539)
57 PLN02197 pectinesterase 97.1 0.029 6.2E-07 63.9 19.4 207 205-472 286-513 (588)
58 PLN02488 probable pectinestera 97.1 0.028 6.1E-07 62.6 18.6 148 205-412 208-363 (509)
59 PLN02933 Probable pectinestera 97.1 0.027 5.8E-07 63.4 18.7 148 205-412 229-384 (530)
60 PLN02304 probable pectinestera 97.1 0.039 8.5E-07 59.6 19.3 50 200-253 82-133 (379)
61 PLN02745 Putative pectinestera 97.1 0.037 8.1E-07 63.2 19.8 206 205-472 296-520 (596)
62 PLN02217 probable pectinestera 97.1 0.027 5.8E-07 65.0 18.7 208 205-473 261-486 (670)
63 PLN02634 probable pectinestera 97.1 0.022 4.8E-07 61.1 16.7 46 205-253 67-114 (359)
64 PLN02314 pectinesterase 97.1 0.035 7.7E-07 63.4 19.3 207 205-473 289-509 (586)
65 PLN03043 Probable pectinestera 97.1 0.033 7.1E-07 63.0 18.8 206 205-473 234-462 (538)
66 PLN02432 putative pectinestera 97.1 0.039 8.5E-07 57.8 18.0 46 205-253 22-69 (293)
67 PLN02176 putative pectinestera 97.0 0.076 1.6E-06 56.7 19.7 46 205-253 50-97 (340)
68 PF01095 Pectinesterase: Pecti 97.0 0.021 4.6E-07 60.0 15.2 47 204-253 10-58 (298)
69 PLN02671 pectinesterase 96.9 0.071 1.5E-06 57.3 19.2 50 200-253 66-117 (359)
70 PLN02990 Probable pectinestera 96.9 0.035 7.6E-07 63.2 17.7 180 205-444 270-462 (572)
71 PLN02497 probable pectinestera 96.9 0.055 1.2E-06 57.6 18.0 50 200-253 39-90 (331)
72 PF12218 End_N_terminal: N ter 96.9 0.001 2.2E-08 52.9 3.5 39 197-238 1-39 (67)
73 PF00544 Pec_lyase_C: Pectate 96.7 0.022 4.8E-07 56.4 12.6 128 326-470 43-200 (200)
74 PF01696 Adeno_E1B_55K: Adenov 96.6 0.19 4.1E-06 54.3 19.2 53 188-254 42-94 (386)
75 COG4677 PemB Pectin methyleste 95.9 0.14 3E-06 53.8 13.2 45 204-253 92-141 (405)
76 COG3420 NosD Nitrous oxidase a 95.7 0.11 2.5E-06 54.7 11.9 47 372-419 196-244 (408)
77 PRK10123 wcaM putative colanic 95.6 0.48 1E-05 49.1 15.5 21 217-237 67-87 (464)
78 PF03211 Pectate_lyase: Pectat 93.7 1 2.2E-05 45.2 12.2 127 353-505 62-194 (215)
79 PF14592 Chondroitinas_B: Chon 91.3 1.5 3.2E-05 48.3 10.6 121 328-452 66-222 (425)
80 PF08480 Disaggr_assoc: Disagg 90.9 1.6 3.5E-05 42.6 9.2 18 551-570 180-197 (198)
81 TIGR03804 para_beta_helix para 90.9 0.24 5.2E-06 36.5 2.9 39 372-411 1-39 (44)
82 TIGR03804 para_beta_helix para 90.4 0.45 9.8E-06 35.1 4.1 41 345-390 1-41 (44)
83 PLN02480 Probable pectinestera 89.8 4.5 9.7E-05 43.5 12.5 111 350-473 130-252 (343)
84 KOG1924 RhoA GTPase effector D 89.6 1.9 4.2E-05 50.1 9.9 19 91-109 536-554 (1102)
85 PF03211 Pectate_lyase: Pectat 88.2 10 0.00022 38.2 12.9 136 325-467 57-194 (215)
86 PLN02665 pectinesterase family 87.8 9.4 0.0002 41.5 13.3 116 347-474 149-273 (366)
87 PF09251 PhageP22-tail: Salmon 87.5 12 0.00025 41.2 13.6 88 432-542 311-400 (549)
88 PLN02682 pectinesterase family 87.2 7.7 0.00017 42.1 12.2 21 322-342 156-176 (369)
89 PLN02170 probable pectinestera 87.0 7.1 0.00015 44.3 12.3 116 346-474 307-428 (529)
90 PF07602 DUF1565: Protein of u 86.7 3.1 6.8E-05 42.6 8.6 79 394-481 116-196 (246)
91 KOG1924 RhoA GTPase effector D 86.6 5 0.00011 46.8 10.7 13 95-107 526-538 (1102)
92 PLN02217 probable pectinestera 85.8 5.6 0.00012 46.4 10.9 112 349-473 334-452 (670)
93 PF01696 Adeno_E1B_55K: Adenov 85.0 22 0.00048 38.8 14.3 106 327-450 119-226 (386)
94 PLN02301 pectinesterase/pectin 84.8 8 0.00017 44.2 11.5 114 347-473 318-438 (548)
95 PRK10531 acyl-CoA thioesterase 84.7 14 0.00031 40.8 12.9 21 322-342 199-219 (422)
96 PLN02468 putative pectinestera 84.4 8.4 0.00018 44.2 11.5 114 348-474 341-461 (565)
97 PLN02416 probable pectinestera 84.3 7.7 0.00017 44.2 11.1 114 348-473 313-432 (541)
98 PLN02197 pectinesterase 84.0 10 0.00022 43.8 11.8 114 348-474 360-481 (588)
99 PLN02698 Probable pectinestera 83.9 9 0.0002 43.3 11.3 140 324-473 265-419 (497)
100 PLN02745 Putative pectinestera 83.9 10 0.00022 43.8 11.8 114 348-474 368-488 (596)
101 PLN03043 Probable pectinestera 83.5 12 0.00026 42.7 12.1 114 347-473 308-428 (538)
102 PLN02314 pectinesterase 82.1 10 0.00022 43.8 11.0 115 348-474 361-481 (586)
103 PLN02995 Probable pectinestera 81.7 11 0.00023 43.2 10.8 112 349-473 309-427 (539)
104 PLN02634 probable pectinestera 81.5 28 0.00061 37.7 13.4 18 324-341 144-161 (359)
105 PLN02313 Pectinesterase/pectin 81.2 12 0.00027 43.0 11.3 115 348-474 358-478 (587)
106 PF08480 Disaggr_assoc: Disagg 78.4 7.9 0.00017 37.9 7.3 16 430-445 62-77 (198)
107 PLN02698 Probable pectinestera 78.0 24 0.00051 40.0 12.0 113 349-474 267-386 (497)
108 PLN02773 pectinesterase 72.2 52 0.0011 35.1 12.2 82 322-413 95-182 (317)
109 PF09251 PhageP22-tail: Salmon 67.3 15 0.00033 40.3 6.9 68 378-452 263-354 (549)
110 KOG1830 Wiskott Aldrich syndro 61.1 2.7E+02 0.0058 30.9 15.1 20 195-214 449-468 (518)
111 smart00722 CASH Domain present 61.0 89 0.0019 27.7 10.0 69 326-397 73-145 (146)
112 PLN02176 putative pectinestera 56.2 1.6E+02 0.0034 31.9 12.2 15 327-341 120-134 (340)
113 PF08047 His_leader: Histidine 52.9 6 0.00013 22.9 0.5 7 22-28 3-9 (16)
114 KOG3671 Actin regulatory prote 52.3 4E+02 0.0087 30.3 16.1 13 199-211 492-504 (569)
115 PLN02432 putative pectinestera 47.7 2.2E+02 0.0047 30.2 11.4 17 325-341 90-106 (293)
116 PRK09752 adhesin; Provisional 44.8 5.9E+02 0.013 32.2 15.6 62 352-413 121-191 (1250)
117 PF01095 Pectinesterase: Pecti 43.4 2.2E+02 0.0048 30.0 10.8 136 324-473 82-236 (298)
118 PLN02916 pectinesterase family 41.7 3.6E+02 0.0078 30.8 12.6 114 348-474 273-393 (502)
119 PRK09727 his operon leader pep 41.7 11 0.00023 24.4 0.4 12 31-42 6-17 (26)
120 PLN02671 pectinesterase 41.2 3.4E+02 0.0073 29.6 11.9 81 322-412 147-237 (359)
121 PLN02506 putative pectinestera 40.9 2.5E+02 0.0054 32.3 11.4 115 346-473 313-434 (537)
122 PLN02708 Probable pectinestera 40.2 2.2E+02 0.0047 32.9 10.8 20 323-342 324-343 (553)
123 KOG1777 Putative Zn-finger pro 39.9 39 0.00085 37.4 4.6 76 372-459 420-498 (625)
124 PF10813 DUF2733: Protein of u 39.7 15 0.00033 25.8 0.9 25 17-41 1-25 (32)
125 KOG2675 Adenylate cyclase-asso 37.3 1.5E+02 0.0033 32.9 8.4 174 151-380 229-428 (480)
126 KOG0260 RNA polymerase II, lar 36.2 1E+03 0.022 30.3 16.1 11 43-53 1435-1445(1605)
127 PLN02304 probable pectinestera 35.6 3.5E+02 0.0077 29.7 11.0 18 324-341 157-174 (379)
128 KOG0162 Myosin class I heavy c 33.9 1.7E+02 0.0037 34.7 8.5 12 154-165 1041-1053(1106)
129 smart00722 CASH Domain present 33.6 2.3E+02 0.0051 24.9 8.1 13 328-340 44-56 (146)
130 PLN02933 Probable pectinestera 33.5 6.1E+02 0.013 29.2 12.9 114 347-473 300-420 (530)
131 PLN02484 probable pectinestera 32.3 2.6E+02 0.0055 32.6 9.8 115 347-474 355-476 (587)
132 PLN02201 probable pectinestera 31.7 3.7E+02 0.008 30.8 10.8 113 348-473 289-408 (520)
133 PLN02713 Probable pectinestera 31.5 3.1E+02 0.0066 31.8 10.2 113 348-473 336-455 (566)
134 smart00710 PbH1 Parallel beta- 31.5 59 0.0013 19.7 2.8 18 380-397 3-21 (26)
135 COG4677 PemB Pectin methyleste 30.9 1.1E+02 0.0025 32.8 6.1 41 189-229 81-131 (405)
136 PLN02497 probable pectinestera 30.5 6.7E+02 0.015 27.0 12.0 18 325-342 111-128 (331)
137 PF01690 PLRV_ORF5: Potato lea 30.1 1.4E+02 0.003 33.5 6.9 12 352-363 162-173 (465)
138 KOG0917 Uncharacterized conser 30.1 1.7E+02 0.0037 30.6 7.0 25 30-54 138-162 (338)
139 PRK09752 adhesin; Provisional 29.9 1.2E+03 0.026 29.7 15.0 60 353-414 97-165 (1250)
140 PLN02990 Probable pectinestera 29.9 7.4E+02 0.016 28.8 13.0 114 348-474 343-463 (572)
141 PHA03358 Alkaline exonuclease; 29.1 17 0.00037 29.9 -0.2 27 17-43 1-27 (75)
142 PLN02488 probable pectinestera 28.5 5.4E+02 0.012 29.4 11.3 114 348-474 280-400 (509)
143 PRK09697 protein secretion pro 23.0 59 0.0013 29.4 2.0 47 6-54 24-92 (139)
144 PHA03307 transcriptional regul 22.3 1.7E+03 0.037 28.5 18.3 42 183-228 445-489 (1352)
145 KOG0162 Myosin class I heavy c 21.9 1E+03 0.022 28.7 11.8 10 187-196 1052-1061(1106)
146 KOG1094 Discoidin domain recep 20.2 1.4E+02 0.0031 34.7 4.8 28 36-63 436-463 (807)
No 1
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=1.1e-71 Score=603.10 Aligned_cols=382 Identities=46% Similarity=0.899 Sum_probs=343.8
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhc-CCcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCccc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQK-DFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWL 265 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~-~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~ 265 (584)
+.++||++|||+|||.+|||+|||+||++||+. +|++|+||+|++|+++++.|++|||++++|+++|+|+++.+..+|+
T Consensus 50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHcc
Confidence 479999999999999999999999999976664 4789999999779999999999999999999999999999999998
Q ss_pred ccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCce
Q 040748 266 QKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFH 345 (584)
Q Consensus 266 ~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~ 345 (584)
.. ....||++.+.+||+|+|.|+|||+|+.||....+... .+. -..||++|.|.+|+|++|+|++++|++.|+
T Consensus 130 ~~-~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~-~~~-----~~~rP~~i~f~~~~nv~v~gitl~nSp~~~ 202 (443)
T PLN02793 130 GL-NPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINH-TNP-----CRHAPTAITFHKCKDLRVENLNVIDSQQMH 202 (443)
T ss_pred CC-CCceEEEEecCceEEEEeceEEECCCcccccccccccC-CCC-----ccCCceEEEEEeeccEEEECeEEEcCCCeE
Confidence 64 34579999999999999999999999999975322111 010 015899999999999999999999999999
Q ss_pred eeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748 346 FRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH 425 (584)
Q Consensus 346 I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~ 425 (584)
+++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+|||+|||++++
T Consensus 203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~ 282 (443)
T PLN02793 203 IAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKS 282 (443)
T ss_pred EEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecC-CCCCCCCCCCeeEEeEEEE
Q 040748 426 NSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCL-TKDCTNKTSAVYVSDILYS 504 (584)
Q Consensus 426 ~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~-~~~~~~~~~~~~I~nItf~ 504 (584)
...+.|+||+|+||+|.++.+|+|||+|+++.|.|+||+|+||+|+++.+||.|+++|+. ...|.+....+.|+||+|+
T Consensus 283 ~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~ 362 (443)
T PLN02793 283 NSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFV 362 (443)
T ss_pred CCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEE
Confidence 667889999999999999999999999999999999999999999999999999999986 4468777788999999999
Q ss_pred eEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCCCCccccceeecceecCCccccCCccccCcCCCCCcccc
Q 040748 505 NIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDN 579 (584)
Q Consensus 505 NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~g~~~~~~~c~nv~G~~~~~t~~~~~~~~~~~~~~~~~~ 579 (584)
||+++...+ .++.+.|++..+|+||+|+||+|+...|.. ....|||++|...+...|| +||.++.| .+.|+
T Consensus 363 nI~Gt~~~~-~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~-~~~~C~n~~g~~~~~~~p~-~C~~~~~~-~~~~~ 433 (443)
T PLN02793 363 HIKGTSATE-EAIKFACSDSSPCEGLYLEDVQLLSSTGDF-TESFCWEAYGSSSGQVYPP-PCFSDSTS-FIKQK 433 (443)
T ss_pred EEEEEEccc-ccEEEEeCCCCCEeeEEEEeeEEEecCCCC-CCcEEEccEEeECCeEcCC-ccccCCCc-ccccc
Confidence 999998643 578999999999999999999999887663 4578999999999998888 99998875 44444
No 2
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=1.2e-68 Score=577.07 Aligned_cols=361 Identities=43% Similarity=0.802 Sum_probs=326.9
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhc-CCcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCccc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQK-DFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWL 265 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~-~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~ 265 (584)
..++||++|||+|||.+|||+|||+||++||+. ++++|+||+|++|+++++.|++||+++++|+++|+|+++.+..+|+
T Consensus 65 ~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks~~~l~l~g~L~~s~d~~~y~ 144 (431)
T PLN02218 65 PTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDYK 144 (431)
T ss_pred CcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCCceEEEEEEEEEeCCChhhcc
Confidence 379999999999999999999999999766655 4679999999779999999999999999999999999999988886
Q ss_pred ccCCcceeEEEeeeeceEEecC--eEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC
Q 040748 266 QKNSKRQWLVFYKINELSLQGG--GTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ 343 (584)
Q Consensus 266 ~~~~~~~lI~~~~~~NVtI~G~--G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~ 343 (584)
. ...||.+.+.+||+|+|. |+|||+|+.||...++..+ ..+ -..||++|.|.+|+|++|+||+++|+++
T Consensus 145 ~---~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~-----~~~-~~~rP~~i~f~~~~nv~I~gitl~nSp~ 215 (431)
T PLN02218 145 D---ISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNK-----AKP-CTKAPTALTFYNSKSLIVKNLRVRNAQQ 215 (431)
T ss_pred c---cccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCC-----cCc-cCcCCEEEEEEccccEEEeCeEEEcCCC
Confidence 4 346899999999999996 9999999999975432111 111 0158999999999999999999999999
Q ss_pred ceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccC
Q 040748 344 FHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLG 423 (584)
Q Consensus 344 ~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g 423 (584)
|++++..|+||+|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||++|++++||+|+||+|..+|||+|||++
T Consensus 216 w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g 295 (431)
T PLN02218 216 IQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLG 295 (431)
T ss_pred EEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCC
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEE
Q 040748 424 NHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILY 503 (584)
Q Consensus 424 ~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf 503 (584)
.+...+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++++||.|++.|+....|......+.|+||+|
T Consensus 296 ~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~Gg~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~ 375 (431)
T PLN02218 296 DDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQQSAVQVKNVVY 375 (431)
T ss_pred CCCCCceEEEEEEEccEEecCCcceEEeecCCCCeEEEEEEEEeEEEEcccccEEEEeeccCCCCCCCCCCCeEEEEEEE
Confidence 76667899999999999999999999999999999999999999999999999999999997666877677889999999
Q ss_pred EeEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCCCCccccceeecceecCCccccC
Q 040748 504 SNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIP 563 (584)
Q Consensus 504 ~NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~g~~~~~~~c~nv~G~~~~~t~~ 563 (584)
+||+++.... .++.+.|++..+|+||+|+||.|... ...|+||+|...+...|
T Consensus 376 ~NI~gtsa~~-~ai~l~cs~~~pc~nI~l~nV~i~~~------~~~c~n~~~~~~~~~~p 428 (431)
T PLN02218 376 RNISGTSASD-VAITFNCSKNYPCQGIVLDNVNIKGG------KATCTNANVVDKGAVSP 428 (431)
T ss_pred EeEEEEecCC-cEEEEEECCCCCEeeEEEEeEEEECC------eeeEEEeeEEEcccCCC
Confidence 9999987643 57889999999999999999999853 25799999999988666
No 3
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=4.3e-68 Score=571.88 Aligned_cols=366 Identities=41% Similarity=0.773 Sum_probs=327.4
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhc-CCcEEEEcCCeEEEeeeeeeecccCCc-eEEeeeeeecCCCCCCcc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQK-DFAVIHVPYGFSFMIQSTIFTGPCQGS-IVFQVDGTIMPPDGPESW 264 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~-~g~~v~~p~G~tY~i~~~~ltgp~ksn-vtL~l~GtL~~s~~~~~~ 264 (584)
+.++||++|||+|||.+|||+|||+||++||+. ++++|+||+|++|+++.+.|.+||++. +.++++|+|+++.. ..|
T Consensus 21 ~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~~-~~w 99 (456)
T PLN03003 21 SNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPSK-GNW 99 (456)
T ss_pred eeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCcc-ccc
Confidence 478999999999999999999999999998864 578999999988999999999999774 78888999988653 457
Q ss_pred cccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc
Q 040748 265 LQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF 344 (584)
Q Consensus 265 ~~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~ 344 (584)
... ...||.|.++++++|+|.|+|||+|+.||... ..||++|.|.+|+|++|+|++++|++.|
T Consensus 100 ~~~--~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~---------------~~rP~~l~f~~~~nv~I~gitl~NSp~w 162 (456)
T PLN03003 100 KGD--KDQWILFTDIEGLVIEGDGEINGQGSSWWEHK---------------GSRPTALKFRSCNNLRLSGLTHLDSPMA 162 (456)
T ss_pred cCC--CcceEEEEcccceEEeccceEeCCchhhhhcc---------------cCCceEEEEEecCCcEEeCeEEecCCcE
Confidence 542 45699999999999999999999999999741 1689999999999999999999999999
Q ss_pred eeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCC
Q 040748 345 HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGN 424 (584)
Q Consensus 345 ~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~ 424 (584)
++++..|++|+|++++|.++..++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|..+|||+|||++.
T Consensus 163 ~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~ 242 (456)
T PLN03003 163 HIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGK 242 (456)
T ss_pred EEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccC
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecCCC---CCCCCCCCeeEEeE
Q 040748 425 HNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTK---DCTNKTSAVYVSDI 501 (584)
Q Consensus 425 ~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~---~~~~~~~~~~I~nI 501 (584)
++..+.|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||.|+++.+||.|+++|+... .|....+.+.|+||
T Consensus 243 ~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~Gg~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI 322 (456)
T PLN03003 243 DGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKV 322 (456)
T ss_pred CCCcceEEEEEEEeeEEECCCcEEEEEEeCCCCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeE
Confidence 665678999999999999999999999999999999999999999999999999999998532 24445667999999
Q ss_pred EEEeEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCC-C-CccccceeecceecCCccccCCccccCcCC
Q 040748 502 LYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAK-G-DLVSDPFCWNAYGDLPTLTIPPVSCLLEGI 572 (584)
Q Consensus 502 tf~NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~-g-~~~~~~~c~nv~G~~~~~t~~~~~~~~~~~ 572 (584)
+|+||+++...+ .++.+.|++..+|+||+|+||.|+... | .......|+||+|... .+.||.+||..+.
T Consensus 323 ~f~NI~GTs~~~-~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~-~~~~~~~C~~~~~ 393 (456)
T PLN03003 323 VFSNFIGTSKSE-YGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGAST-IAVPGLECLELST 393 (456)
T ss_pred EEEeEEEEeCcc-ceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccC-ceECCCCccccCC
Confidence 999999987643 578899999999999999999998763 2 2335689999999876 5566669998765
No 4
>PLN02155 polygalacturonase
Probab=100.00 E-value=1.3e-67 Score=563.24 Aligned_cols=366 Identities=39% Similarity=0.744 Sum_probs=326.1
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhc-CCcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCccc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQK-DFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWL 265 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~-~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~ 265 (584)
+.++||++|||+|||.||||+|||+||+++|+. +|++|+||+| +|+++.+.|.+|||++++|+|+|+|+++.++..|.
T Consensus 25 ~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G-~yl~g~i~l~gpcksnv~l~l~G~l~~~~d~~~~~ 103 (394)
T PLN02155 25 SNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGPCKSKITFQVAGTVVAPEDYRTFG 103 (394)
T ss_pred CcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCC-cEEEEEEEEcccCCCCceEEEeeEEECcccccccc
Confidence 589999999999999999999999999755554 5789999999 79999999999999999999999999888777664
Q ss_pred ccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCce
Q 040748 266 QKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFH 345 (584)
Q Consensus 266 ~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~ 345 (584)
. ...|+.+.+.+|+.|+| |+|||+|+.||..... +... ..+|++|.|.+|++++|+||+++|++.|+
T Consensus 104 ~---~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~~~------~~~~---~~~p~~i~~~~~~nv~i~gitl~nSp~w~ 170 (394)
T PLN02155 104 N---SGYWILFNKVNRFSLVG-GTFDARANGFWSCRKS------GQNC---PPGVRSISFNSAKDVIISGVKSMNSQVSH 170 (394)
T ss_pred c---cceeEEEECcCCCEEEc-cEEecCceeEEEcccC------CCCC---CCcccceeEEEeeeEEEECeEEEcCCCeE
Confidence 3 23589999999999999 9999999999974211 1111 14678999999999999999999999999
Q ss_pred eeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748 346 FRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH 425 (584)
Q Consensus 346 I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~ 425 (584)
+++..|+||+|++++|.++..++|+||||+.+|++|+|+||+|.+|||||+++++++||+|+||+|..+|||+|||++++
T Consensus 171 i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~ 250 (394)
T PLN02155 171 MTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKE 250 (394)
T ss_pred EEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEecccccc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999765
Q ss_pred CCCCcEEeEEEEeeEEecCCceEEEEeecC-CCCeEEeEEEEceEEcCCcccEEEEEeecCCC-CCCCCCCCeeEEeEEE
Q 040748 426 NSRACVSNITVRDSVIKVSNNGVRIKTWQG-GSGAVSGITFSNIHMNNVRNPIIIDQYYCLTK-DCTNKTSAVYVSDILY 503 (584)
Q Consensus 426 ~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g-~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~-~~~~~~~~~~I~nItf 503 (584)
...+.++||+|+||+|.++.+|+|||+|.+ +.|.|+||+|+||+|+++++||.|++.|+... .|....+.+.|+||+|
T Consensus 251 ~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~ 330 (394)
T PLN02155 251 LNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTY 330 (394)
T ss_pred CCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEE
Confidence 456889999999999999999999999865 67999999999999999999999999998643 4655567789999999
Q ss_pred EeEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCCCCccccceeecceecCCccccCCccccC
Q 040748 504 SNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLL 569 (584)
Q Consensus 504 ~NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~g~~~~~~~c~nv~G~~~~~t~~~~~~~~ 569 (584)
+||+++...+ .++.+.|.+..+|+||+|+||+|+...+.. ....|+||+|....+..|+ +||.
T Consensus 331 ~ni~gt~~~~-~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~-~~~~C~n~~G~~~~~~~p~-~c~~ 393 (394)
T PLN02155 331 KNIQGTSATQ-EAMKLVCSKSSPCTGITLQDIKLTYNKGTP-ATSFCFNAVGKSLGVIQPT-SCLN 393 (394)
T ss_pred EeeEEEecCC-ceEEEEeCCCCCEEEEEEEeeEEEecCCCc-cCcEEeccEeEEcccCCcc-cccC
Confidence 9999997743 578999999999999999999999886653 4689999999998876544 9985
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=6.6e-67 Score=559.17 Aligned_cols=356 Identities=38% Similarity=0.737 Sum_probs=327.2
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhcCC--cEEEEcCCeEEEeeeeeeecccC-CceEEeeeeeecCCCCCCc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDF--AVIHVPYGFSFMIQSTIFTGPCQ-GSIVFQVDGTIMPPDGPES 263 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g--~~v~~p~G~tY~i~~~~ltgp~k-snvtL~l~GtL~~s~~~~~ 263 (584)
..++||++|||+|||.+|||+|||+||+++|+.+| ++|+||+|++|+++++.|.+||+ ++++|+++|+|+++.+...
T Consensus 44 ~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d~~~ 123 (409)
T PLN03010 44 GQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVA 123 (409)
T ss_pred CcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCChhh
Confidence 57899999999999999999999999998886433 69999999779999999999995 6899999999999999999
Q ss_pred ccccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC
Q 040748 264 WLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ 343 (584)
Q Consensus 264 ~~~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~ 343 (584)
|+.. ....|+.|.+++||+|+|.|+|||+|+.||. ++.|.+|+|++|+||+++|++.
T Consensus 124 w~~~-~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~----------------------~l~~~~~~nv~v~gitl~nsp~ 180 (409)
T PLN03010 124 WSNP-KSQMWISFSTVSGLMIDGSGTIDGRGSSFWE----------------------ALHISKCDNLTINGITSIDSPK 180 (409)
T ss_pred ccCC-CCcceEEEecccccEEeeceEEeCCCccccc----------------------eEEEEeecCeEEeeeEEEcCCc
Confidence 9753 2356899999999999999999999999995 4899999999999999999999
Q ss_pred ceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccC
Q 040748 344 FHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLG 423 (584)
Q Consensus 344 ~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g 423 (584)
|++++..|++|+|++++|.++..++|+||||+.+|++|+|+||+|.+|||||++|+++.++.|+++.|..+|||+|||++
T Consensus 181 ~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g 260 (409)
T PLN03010 181 NHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLG 260 (409)
T ss_pred eEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCC
Confidence 99999999999999999999887899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecCC-CCCCCCCCCeeEEeEE
Q 040748 424 NHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLT-KDCTNKTSAVYVSDIL 502 (584)
Q Consensus 424 ~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~-~~~~~~~~~~~I~nIt 502 (584)
.++....|+||+|+||+|.++.+|+|||+|+|+.|.|+||+|+||+|+++++||.|++.|+.. ..|....+.+.|+||+
T Consensus 261 ~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~ 340 (409)
T PLN03010 261 ADGANAKVSDVHVTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVK 340 (409)
T ss_pred CCCCCCeeEEEEEEeeEEeCCCcceEEEEecCCCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEE
Confidence 876667899999999999999999999999999999999999999999999999999999874 3577778899999999
Q ss_pred EEeEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCCCCccccceeecceecCCccccCCcccc
Q 040748 503 YSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCL 568 (584)
Q Consensus 503 f~NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~g~~~~~~~c~nv~G~~~~~t~~~~~~~ 568 (584)
|+||+++.... .++.|.|++..+|+||+|+||+|+...|.. +...|+|+.|.......|| +||
T Consensus 341 ~~ni~GT~~~~-~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~-~~~~C~nv~g~~~~~~~~~-~C~ 403 (409)
T PLN03010 341 YVGFRGTTSNE-NAITLKCSAITHCKDVVMDDIDVTMENGEK-PKVECQNVEGESSDTDLMR-DCF 403 (409)
T ss_pred EEeeEEEeCCC-ccEEEEeCCCCCEeceEEEEEEEEecCCCc-cceEeeCccccccCCCCCC-ccc
Confidence 99999987643 689999999999999999999999887654 4689999999988886666 899
No 6
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1.1e-65 Score=550.35 Aligned_cols=367 Identities=38% Similarity=0.683 Sum_probs=321.7
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhcC-CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCccc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKD-FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWL 265 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~-g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~ 265 (584)
..++||++|||+|||.+|||+|||+||+++|+.. |++|+||+| +|+++++.|.+||++...|.| +|+++.+..+|.
T Consensus 34 ~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G-~yl~g~i~lkgpc~~~s~v~l--~L~~s~d~~~y~ 110 (404)
T PLN02188 34 TFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYYIGPVQFHGPCTNVSSLTF--TLKAATDLSRYG 110 (404)
T ss_pred ceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCC-eEEEEeEEeCCCcCcceeEEE--EEEcCCCHHHCC
Confidence 4799999999999999999999999998666544 679999999 799999999999965544444 888999988887
Q ss_pred ccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCce
Q 040748 266 QKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFH 345 (584)
Q Consensus 266 ~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~ 345 (584)
. ...|+.+..++||+|+|.|+|||+|+.||........ .. ...||++|.|.+|++++|+|++++|++.|+
T Consensus 111 ~---~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~-~~------~~~rP~~i~f~~~~nv~i~gitl~nSp~w~ 180 (404)
T PLN02188 111 S---GNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIR-KD------CKLLPTSVKFVNMNNTVVRGITSVNSKFFH 180 (404)
T ss_pred C---ccceEEEeceeeEEEEeeEEEeCCCcccccccccccC-CC------CCcCceEEEEEeeeeEEEeCeEEEcCCCeE
Confidence 4 3568888889999999999999999999974311000 01 116899999999999999999999999999
Q ss_pred eeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748 346 FRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH 425 (584)
Q Consensus 346 I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~ 425 (584)
+++..|++|+|++++|.++..++|+||||+.+|++|+|+||+|.+|||||+++++++||+|+||.|..+|||+|||+|++
T Consensus 181 i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~ 260 (404)
T PLN02188 181 IALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRY 260 (404)
T ss_pred EEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCC
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999998876
Q ss_pred CCCCcEEeEEEEeeEEecCCceEEEEeecC--CCCeEEeEEEEceEEcCCcccEEEEEeecCCCCCCC-CCCCeeEEeEE
Q 040748 426 NSRACVSNITVRDSVIKVSNNGVRIKTWQG--GSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTN-KTSAVYVSDIL 502 (584)
Q Consensus 426 ~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g--~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~-~~~~~~I~nIt 502 (584)
...+.++||+|+||+|.++.+|+|||+|.+ +.|.|+||+|+||+|+++.+||.|++.|+....|.. ....+.|+||+
T Consensus 261 ~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt 340 (404)
T PLN02188 261 PNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIY 340 (404)
T ss_pred CcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeEE
Confidence 666889999999999999999999999976 458999999999999999999999999987655643 34568999999
Q ss_pred EEeEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCCCCccccceeecceecCCccccCCcccc
Q 040748 503 YSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCL 568 (584)
Q Consensus 503 f~NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~g~~~~~~~c~nv~G~~~~~t~~~~~~~ 568 (584)
|+||+++.... .++.+.|++..+|+||+|+||+|+...|.......|+||+|.......|| +|+
T Consensus 341 ~~nI~gt~~~~-~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~-~C~ 404 (404)
T PLN02188 341 FKNIRGTSSSQ-VAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPP-PCP 404 (404)
T ss_pred EEEEEEEecCc-eEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCC-CCC
Confidence 99999987633 57889999999999999999999988665444689999999999887665 885
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=9.4e-52 Score=434.33 Aligned_cols=319 Identities=37% Similarity=0.638 Sum_probs=273.2
Q ss_pred CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeeceEEecCeEEeCCCCccccC
Q 040748 221 FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDL 300 (584)
Q Consensus 221 g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~ 300 (584)
+++|+||+| +|+++.+.|.++|+.++.|.|+|++.+......|. ...||.+.+++|++|+|.|+|||+|+.||+.
T Consensus 6 ~~~v~vP~g-~~~~~~~~l~~~l~~~~~~~l~G~~~~~~~~~~~~----~~~~i~~~~~~ni~i~G~G~IDG~G~~w~~~ 80 (326)
T PF00295_consen 6 GGTVVVPAG-TYLLGPLFLKSTLHSDVGLTLDGTINFSYDNWEGP----NSALIYAENAENITITGKGTIDGNGQAWWDG 80 (326)
T ss_dssp EESEEESTS-TEEEEETSEETECETTCEEEEESEEEEG-EESTSE-----SEEEEEESEEEEECTTSSEEE--GGGTCSS
T ss_pred CCEEEECCC-CeEEceeEEEcccCCCeEEEEEEEEEeCCCcccCC----ccEEEEEEceEEEEecCCceEcCchhhhhcc
Confidence 568999999 79999998876777899999999987763333332 1678999999999999999999999999985
Q ss_pred CCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCccc
Q 040748 301 PCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNG 380 (584)
Q Consensus 301 ~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~n 380 (584)
..... . ....||++|.|.+|++++|+|++++|++.|++++..|+||+|++++|.++...+|+|||++.+|++
T Consensus 81 ~~~~~---~-----~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~n 152 (326)
T PF00295_consen 81 SGDAN---N-----NGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKN 152 (326)
T ss_dssp CTTHC---C-----SSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEE
T ss_pred ccccc---c-----ccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeE
Confidence 42100 0 112789999999999999999999999999999999999999999999987779999999999999
Q ss_pred EEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeE
Q 040748 381 VEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAV 460 (584)
Q Consensus 381 V~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V 460 (584)
|+|+||+|.++||||++|++..||+|+||+|.++||++|||++.+.....++||+|+||+|.++.+|++||++.++.|.|
T Consensus 153 v~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~~~G~v 232 (326)
T PF00295_consen 153 VTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPGGGGYV 232 (326)
T ss_dssp EEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETTTSEEE
T ss_pred EEEEEeecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecccceEE
Confidence 99999999999999999998889999999999999999999986544457999999999999999999999999999999
Q ss_pred EeEEEEceEEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcC
Q 040748 461 SGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPA 540 (584)
Q Consensus 461 ~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~ 540 (584)
+||+|+||+|+++.+||.|++.|.....|......+.|+||+|+||+++... ..++.+.|.+..+|+||+|+||.|++
T Consensus 233 ~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~-~~~i~i~~~~~~~~~ni~f~nv~i~~- 310 (326)
T PF00295_consen 233 SNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAG-SSAISIDCSPGSPCSNITFENVNITG- 310 (326)
T ss_dssp EEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEEST-SEEEEEE-BTTSSEEEEEEEEEEEES-
T ss_pred eceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEecc-ceEEEEEECCcCcEEeEEEEeEEEEc-
Confidence 9999999999999999999999988666666666789999999999999875 35789999999999999999999999
Q ss_pred CCCccccceeecceecC
Q 040748 541 KGDLVSDPFCWNAYGDL 557 (584)
Q Consensus 541 ~g~~~~~~~c~nv~G~~ 557 (584)
|. ....|.|+....
T Consensus 311 -g~--~~~~c~nv~~~~ 324 (326)
T PF00295_consen 311 -GK--KPAQCKNVPSGI 324 (326)
T ss_dssp -SB--SESEEBSCCTT-
T ss_pred -CC--cCeEEECCCCCC
Confidence 32 347999987543
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.2e-39 Score=352.64 Aligned_cols=279 Identities=29% Similarity=0.494 Sum_probs=237.1
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeeeeeeecccCCceEEeee-e-eecCCCCCCcc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVD-G-TIMPPDGPESW 264 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~-G-tL~~s~~~~~~ 264 (584)
...++|++|||+|||.+||++|||+||+++++.+|++|+||+| +|+.+.+.| ||+++|+++ | +|+++.++.+|
T Consensus 80 ~t~~sv~~~ga~gDG~t~~~~aiq~AI~~ca~a~Gg~V~lPaG-tylsg~l~L----KS~~~L~l~egatl~~~~~p~~y 154 (542)
T COG5434 80 DTAFSVSDDGAVGDGATDNTAAIQAAIDACASAGGGTVLLPAG-TYLSGPLFL----KSNVTLHLAEGATLLASSNPKDY 154 (542)
T ss_pred cceeeeccccccccCCccCHHHHHHHHHhhhhhcCceEEECCc-eeEeeeEEE----ecccEEEecCCceeeCCCChhhc
Confidence 5899999999999999999999999999887667999999999 899899988 999999995 6 89999999888
Q ss_pred cc--------cC-------Cc-------------ceeEEEeeeeceE-EecCeEEeCCC----CccccCCCCCCCCCCCC
Q 040748 265 LQ--------KN-------SK-------------RQWLVFYKINELS-LQGGGTIDGRG----HKWWDLPCKPHKGINGT 311 (584)
Q Consensus 265 ~~--------~~-------~~-------------~~lI~~~~~~NVt-I~G~G~IDGnG----~~ww~~~~~~~~g~~g~ 311 (584)
+. .. .. ..++.....+|.. |.|.|+++|++ ..||.... .-..
T Consensus 155 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g-----~~~~ 229 (542)
T COG5434 155 PSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLG-----AVET 229 (542)
T ss_pred cccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhccc-----chhh
Confidence 83 00 00 1223333445555 88888999864 22665432 0112
Q ss_pred CCCCCCCCCeeEEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecC
Q 040748 312 TSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNG 391 (584)
Q Consensus 312 ~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~g 391 (584)
++++.+.||.++.|..|+||+++|++|.+++.|.+++..|+|++++|++|.+.... |+|||++.+|+||+|++|+|.+|
T Consensus 230 ~i~~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtg 308 (542)
T COG5434 230 RIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTG 308 (542)
T ss_pred cccccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecC
Confidence 23322258999999999999999999999999999999999999999999998765 99999999999999999999999
Q ss_pred CCcEEeCCC-----------ceeEEEEecccCCCCc-ceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCe
Q 040748 392 DDCVSIGSG-----------CYDVDIRNITCGPGHG-ISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGA 459 (584)
Q Consensus 392 DDgIai~sg-----------s~NV~I~Nc~~~~g~G-I~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~ 459 (584)
||||+++++ +++|.|+||++..+|| +.+|||+ .++++||++|||.|.++.+|+|||+..+++|.
T Consensus 309 DD~I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~----~ggv~ni~ved~~~~~~d~GLRikt~~~~gG~ 384 (542)
T COG5434 309 DDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM----GGGVQNITVEDCVMDNTDRGLRIKTNDGRGGG 384 (542)
T ss_pred CceEEeecccCCcccccccccccEEEecceecccccceEeeeec----CCceeEEEEEeeeeccCcceeeeeeeccccee
Confidence 999999985 5899999999999998 8999996 68999999999999999999999999999999
Q ss_pred EEeEEEEceEEcCCcccEEEE
Q 040748 460 VSGITFSNIHMNNVRNPIIID 480 (584)
Q Consensus 460 V~NItf~NI~i~~v~~~I~I~ 480 (584)
++||+|+++.|.++..+..|.
T Consensus 385 v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 385 VRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEEEEecccccCcccceeee
Confidence 999999999999986554444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.89 E-value=4.7e-22 Score=212.08 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=130.3
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeeeeeeecccCCceEEeee-eeecCCCCCCccc
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVD-GTIMPPDGPESWL 265 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~-GtL~~s~~~~~~~ 265 (584)
..-+++++|||++||.+|+|+|||+||++|+ .++++|.||+| +|+.+.+.| +++++|.++ |... |.
T Consensus 35 ~r~~dv~~fGa~~dG~td~T~ALQaAIdaAa-~gG~tV~Lp~G-~Y~~G~L~L----~spltL~G~~gAt~-------~v 101 (455)
T TIGR03808 35 TLGRDATQYGVRPNSPDDQTRALQRAIDEAA-RAQTPLALPPG-VYRTGPLRL----PSGAQLIGVRGATR-------LV 101 (455)
T ss_pred ccCCCHHHcCcCCCCcchHHHHHHHHHHHhh-cCCCEEEECCC-ceecccEEE----CCCcEEEecCCcEE-------EE
Confidence 3448899999999999999999999999765 35678999999 799999998 788998886 4310 00
Q ss_pred ccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCce
Q 040748 266 QKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFH 345 (584)
Q Consensus 266 ~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~ 345 (584)
- .....++....+++|+|+|. +|+|.|..|. .|+.+|++..|++++|++++|+++..|+
T Consensus 102 I-dG~~~lIiai~A~nVTIsGL-tIdGsG~dl~-------------------~rdAgI~v~~a~~v~Iedn~L~gsg~FG 160 (455)
T TIGR03808 102 F-TGGPSLLSSEGADGIGLSGL-TLDGGGIPLP-------------------QRRGLIHCQGGRDVRITDCEITGSGGNG 160 (455)
T ss_pred E-cCCceEEEEecCCCeEEEee-EEEeCCCccc-------------------CCCCEEEEccCCceEEEeeEEEcCCcce
Confidence 0 01245677888999999997 9999986552 4677899999999999999999999999
Q ss_pred eeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEec-CCCcEEe
Q 040748 346 FRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISN-GDDCVSI 397 (584)
Q Consensus 346 I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~-gDDgIai 397 (584)
|.+..|+ ..|.+.+|... ...+|+++.+++++|++++|.. .|++|.+
T Consensus 161 I~L~~~~-~~I~~N~I~g~----~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i 208 (455)
T TIGR03808 161 IWLETVS-GDISGNTITQI----AVTAIVSFDALGLIVARNTIIGANDNGIEI 208 (455)
T ss_pred EEEEcCc-ceEecceEecc----ccceEEEeccCCCEEECCEEEccCCCCeEE
Confidence 9999999 55555555553 2234666666666666666653 4444443
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.83 E-value=7.8e-20 Score=179.75 Aligned_cols=213 Identities=28% Similarity=0.439 Sum_probs=116.9
Q ss_pred eEEEecccccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeee-eeeecccCCceEEeeeee----ecCCCCCCc
Q 040748 189 VIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQS-TIFTGPCQGSIVFQVDGT----IMPPDGPES 263 (584)
Q Consensus 189 ~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~-~~ltgp~ksnvtL~l~Gt----L~~s~~~~~ 263 (584)
++||++|||++||++|||+|||+||++++..++++||||+| +|+++. +.+ +++++|+++|. +........
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~~~~~g~~v~~P~G-~Y~i~~~l~~----~s~v~l~G~g~~~~~~~~~~~~~~ 75 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAAAAAGGGVVYFPPG-TYRISGTLII----PSNVTLRGAGGNSTILFLSGSGDS 75 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHHCSTTSEEEEE-SE-EEEESS-EEE-----TTEEEEESSTTTEEEEECTTTST
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhcccCCCeEEEEcCc-EEEEeCCeEc----CCCeEEEccCCCeeEEEecCcccc
Confidence 58999999999999999999999996666667999999999 899998 555 79999999852 332222222
Q ss_pred ccccCCcceeEEEee-eec--eEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEec
Q 040748 264 WLQKNSKRQWLVFYK-INE--LSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKD 340 (584)
Q Consensus 264 ~~~~~~~~~lI~~~~-~~N--VtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~n 340 (584)
+... .....+.. ..+ +.|++ -+|++.....- .....+.|..+++++|++|++.+
T Consensus 76 ~~~~---~~~~~~~~~~~~~~~~i~n-l~i~~~~~~~~-------------------~~~~~i~~~~~~~~~i~nv~~~~ 132 (225)
T PF12708_consen 76 FSVV---PGIGVFDSGNSNIGIQIRN-LTIDGNGIDPN-------------------NNNNGIRFNSSQNVSISNVRIEN 132 (225)
T ss_dssp SCCE---EEEEECCSCSCCEEEEEEE-EEEEETCGCE--------------------SCEEEEEETTEEEEEEEEEEEES
T ss_pred cccc---cceeeeecCCCCceEEEEe-eEEEcccccCC-------------------CCceEEEEEeCCeEEEEeEEEEc
Confidence 2100 01111111 011 11333 23333322110 01235677777778888888877
Q ss_pred CCCceeeeeccccEEEEeEEEECCCCCCCCCceeecC-cccEEEEceEEecCCCcEEeCCCceeEEEEecccCC--CCcc
Q 040748 341 SPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIEN-TNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGP--GHGI 417 (584)
Q Consensus 341 s~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~-S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~--g~GI 417 (584)
....++.+..+....+.+..... ++.+.+ +.++.+.+|.+..+++++... .++++|+||++.. ..||
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~n~~~~~~~~~gi 202 (225)
T PF12708_consen 133 SGGDGIYFNTGTDYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG--NNNITISNNTFEGNCGNGI 202 (225)
T ss_dssp -SS-SEEEECCEECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE--EEEEEEECEEEESSSSESE
T ss_pred cCccEEEEEccccCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee--cceEEEEeEEECCccceeE
Confidence 76666666644444433322221 222221 234555666666666663222 3566666666654 2455
Q ss_pred eeeccCCCCCCCcEEeEEEEeeEEecCCceE
Q 040748 418 SIGSLGNHNSRACVSNITVRDSVIKVSNNGV 448 (584)
Q Consensus 418 ~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI 448 (584)
.+-.. .+++|+|++|.++..||
T Consensus 203 ~i~~~---------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 203 NIEGG---------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EEEEC---------SEEEEEEEEEESSSEEE
T ss_pred EEECC---------eEEEEEeEEEECCccCc
Confidence 55321 23666666666665554
No 11
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.80 E-value=1.8e-17 Score=179.94 Aligned_cols=217 Identities=17% Similarity=0.207 Sum_probs=168.8
Q ss_pred eeEEEEeecCceEeeeeEecCC---Cc--------eeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEe
Q 040748 321 IALRFFMSSNLTVQRLRIKDSP---QF--------HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVIS 389 (584)
Q Consensus 321 ~~I~f~~s~nvtI~gvti~ns~---~~--------~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~ 389 (584)
.+|.|.+.++++|.|--..+.. +| .+.+..|+|+.|+++++.+++.+ .+++..|++|+|+++.|.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEe
Confidence 3789999999999985554432 23 48899999999999999998876 488999999999999998
Q ss_pred c-----CCCcEEeCCCceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecC--CCCeEE
Q 040748 390 N-----GDDCVSIGSGCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQG--GSGAVS 461 (584)
Q Consensus 390 ~-----gDDgIai~sgs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g--~~G~V~ 461 (584)
+ .-|||.+.+ ++||+|+||++..+ ++|+|++ +.+||+|+||++.. .+||.|++.-. ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGP-GHGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEEC-CCCeEEeeccCCCCcceEE
Confidence 6 468999976 89999999999998 5699976 25899999999976 57999998632 235799
Q ss_pred eEEEEceEEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeecCCCCCeEEecC--------------CCCce
Q 040748 462 GITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACS--------------DTVPC 527 (584)
Q Consensus 462 NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~~~~~~i~i~~~--------------~~~~~ 527 (584)
||+|+|++|.+..++++|+++.+ ..+.++||+|+||.+..... ++.+... ....+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G---------g~G~v~nItf~nI~m~nV~~--pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG---------GSGYARMITFNGITLDNVEN--PIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC---------CCeEEEEEEEEeEEecCccc--eEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999998732 35789999999999886643 5554311 12358
Q ss_pred ecEEEEeEEEEcCCCCcccccee------ecceecCCccccC
Q 040748 528 TNLTLSEVELLPAKGDLVSDPFC------WNAYGDLPTLTIP 563 (584)
Q Consensus 528 ~nItf~NI~i~~~~g~~~~~~~c------~nv~G~~~~~t~~ 563 (584)
+||+|+||+.+..... ...+.| .|+.=..++|+.+
T Consensus 320 snI~f~NI~GTs~~~~-ai~l~Cs~~~PC~nI~l~ni~l~~~ 360 (456)
T PLN03003 320 SKVVFSNFIGTSKSEY-GVDFRCSERVPCTEIFLRDMKIETA 360 (456)
T ss_pred EeEEEEeEEEEeCccc-eEEEEeCCCCCeeeEEEEEEEEEec
Confidence 9999999998765432 233444 4454455555543
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.79 E-value=2.3e-17 Score=179.00 Aligned_cols=195 Identities=21% Similarity=0.298 Sum_probs=156.5
Q ss_pred eEEEEeecCceEeee---eEecCC--C-----------------ceeeeeccccEEEEeEEEECCCCCCCCCceeecCcc
Q 040748 322 ALRFFMSSNLTVQRL---RIKDSP--Q-----------------FHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTN 379 (584)
Q Consensus 322 ~I~f~~s~nvtI~gv---ti~ns~--~-----------------~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~ 379 (584)
+|.|.+.+||+|.|- +|.... + ..+.+..|+|++|+++++.+++.| .+++..|+
T Consensus 149 wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w----~i~~~~~~ 224 (431)
T PLN02218 149 WIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQI----QISIEKCS 224 (431)
T ss_pred CEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCE----EEEEEcee
Confidence 577888888888872 232111 1 247889999999999999999877 48899999
Q ss_pred cEEEEceEEec-----CCCcEEeCCCceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEee
Q 040748 380 GVEIYNSVISN-----GDDCVSIGSGCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTW 453 (584)
Q Consensus 380 nV~I~n~~i~~-----gDDgIai~sgs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~ 453 (584)
+|+|+|++|.+ .-|||.+.+ ++||+|+||++..+ ++|+|++ +.+||+|+||++.. .+||.|++.
T Consensus 225 nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~-GHGisIGS~ 294 (431)
T PLN02218 225 NVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGP-GHGISIGSL 294 (431)
T ss_pred eEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEEC-CCCEEECcC
Confidence 99999999986 568999976 89999999999998 5699976 35899999999975 579999886
Q ss_pred cCC--CCeEEeEEEEceEEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeecCCCCCeEEecC---------
Q 040748 454 QGG--SGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACS--------- 522 (584)
Q Consensus 454 ~g~--~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~~~~~~i~i~~~--------- 522 (584)
-.+ .+.|+||+|+|++|.+..++++|+++. ...+.++||+|+||++..... ++.+...
T Consensus 295 g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~---------Gg~G~v~nI~f~ni~m~~V~~--pI~Idq~Y~~~~~~~~ 363 (431)
T PLN02218 295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ---------GGSGTASNIIFQNIQMENVKN--PIIIDQDYCDKSKCTS 363 (431)
T ss_pred CCCCCCceEEEEEEEccEEecCCcceEEeecC---------CCCeEEEEEEEEeEEEEcccc--cEEEEeeccCCCCCCC
Confidence 322 467999999999999999999999873 245799999999999987643 5655421
Q ss_pred --CCCceecEEEEeEEEEcCC
Q 040748 523 --DTVPCTNLTLSEVELLPAK 541 (584)
Q Consensus 523 --~~~~~~nItf~NI~i~~~~ 541 (584)
....++||+|+||+.+.+.
T Consensus 364 ~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 364 QQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCeEEEEEEEEeEEEEecC
Confidence 1234899999999998764
No 13
>PLN02793 Probable polygalacturonase
Probab=99.79 E-value=3.5e-17 Score=178.37 Aligned_cols=222 Identities=18% Similarity=0.248 Sum_probs=172.0
Q ss_pred CCceEEeeeeeecCCCCCCccccc---------CCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCC
Q 040748 244 QGSIVFQVDGTIMPPDGPESWLQK---------NSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSP 314 (584)
Q Consensus 244 ksnvtL~l~GtL~~s~~~~~~~~~---------~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~ 314 (584)
..+++|.+.|+|.+.. ..-|... ..++.+|.+.+++|++|+|.-+++.. .|
T Consensus 142 ~~ni~ItG~G~IDG~G-~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp---~~---------------- 201 (443)
T PLN02793 142 VNHLTVEGGGTVNGMG-HEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ---QM---------------- 201 (443)
T ss_pred CceEEEEeceEEECCC-cccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC---Ce----------------
Confidence 4677888888886532 2223210 12467899999999999996655422 22
Q ss_pred CCCCCCeeEEEEeecCceEeeeeEecCC----CceeeeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEe
Q 040748 315 GPCDSPIALRFFMSSNLTVQRLRIKDSP----QFHFRFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVIS 389 (584)
Q Consensus 315 g~~~rP~~I~f~~s~nvtI~gvti~ns~----~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~ 389 (584)
.+.+.+|+|++|++|+|.+.. ..+|++..|+||+|+|+.|.+. .|+|-+. +|+||+|+||.+.
T Consensus 202 -------~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~g-----DDcIaik~~s~nI~I~n~~c~ 269 (443)
T PLN02793 202 -------HIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTG-----DDCISIVGNSSRIKIRNIACG 269 (443)
T ss_pred -------EEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCC-----CCeEEecCCcCCEEEEEeEEe
Confidence 478899999999999998742 3589999999999999999994 5678885 7999999999998
Q ss_pred cCCCcEEeCC--------CceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCC----
Q 040748 390 NGDDCVSIGS--------GCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGG---- 456 (584)
Q Consensus 390 ~gDDgIai~s--------gs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~---- 456 (584)
.|+ ||+|++ +.+||+|+||++.+. .|+.|++..+ ..+.++||+|+|++|.+..++|.|......
T Consensus 270 ~Gh-GisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~ 346 (443)
T PLN02793 270 PGH-GISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKP 346 (443)
T ss_pred CCc-cEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCC
Confidence 876 699987 258999999999986 7999998643 357899999999999999999999875421
Q ss_pred ------CCeEEeEEEEceEEcCCc-ccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeec
Q 040748 457 ------SGAVSGITFSNIHMNNVR-NPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYD 511 (584)
Q Consensus 457 ------~G~V~NItf~NI~i~~v~-~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~ 511 (584)
...|+||+|+||+.+... .++.|.. .+..+++||+|+||+++..
T Consensus 347 ~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~c-----------s~~~pc~ni~l~nI~l~~~ 397 (443)
T PLN02793 347 CANQTSAVKVENISFVHIKGTSATEEAIKFAC-----------SDSSPCEGLYLEDVQLLSS 397 (443)
T ss_pred CCCCCCCeEEEeEEEEEEEEEEcccccEEEEe-----------CCCCCEeeEEEEeeEEEec
Confidence 135899999999887643 3555542 1345789999999998754
No 14
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.79 E-value=4.5e-17 Score=175.56 Aligned_cols=224 Identities=17% Similarity=0.257 Sum_probs=171.6
Q ss_pred CCceEEeeeeeecCCCCCCccccc--------CCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCC
Q 040748 244 QGSIVFQVDGTIMPPDGPESWLQK--------NSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPG 315 (584)
Q Consensus 244 ksnvtL~l~GtL~~s~~~~~~~~~--------~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g 315 (584)
..+++|...|+|.+... .-|... ..++.+|.|..++|+.|+|.-+.+ ..+|
T Consensus 121 ~~ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~n---Sp~w----------------- 179 (404)
T PLN02188 121 VNGLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN---SKFF----------------- 179 (404)
T ss_pred eeeEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEc---CCCe-----------------
Confidence 35777888888876432 233211 135678999999999999954442 1222
Q ss_pred CCCCCeeEEEEeecCceEeeeeEecCC----CceeeeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEec
Q 040748 316 PCDSPIALRFFMSSNLTVQRLRIKDSP----QFHFRFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISN 390 (584)
Q Consensus 316 ~~~rP~~I~f~~s~nvtI~gvti~ns~----~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~ 390 (584)
.+++..|++++|++++|.+.. ..+|++..|+||.|+|++|.+. .|+|.+. +++||+|+||.+..
T Consensus 180 ------~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~G-----DDcIaiksg~~nI~I~n~~c~~ 248 (404)
T PLN02188 180 ------HIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTG-----DDCISIGQGNSQVTITRIRCGP 248 (404)
T ss_pred ------EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCC-----CcEEEEccCCccEEEEEEEEcC
Confidence 589999999999999998642 3579999999999999999995 4688886 67899999999977
Q ss_pred CCCcEEeCC--------CceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecC------
Q 040748 391 GDDCVSIGS--------GCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQG------ 455 (584)
Q Consensus 391 gDDgIai~s--------gs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g------ 455 (584)
++ ||++++ +.+||+|+||++.++ +|+.|++.......+.++||+|+|++|.+..++|.|.....
T Consensus 249 gh-GisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~ 327 (404)
T PLN02188 249 GH-GISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCE 327 (404)
T ss_pred CC-cEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCC
Confidence 74 699877 268999999999986 79999886432235789999999999999999998876321
Q ss_pred ----CCCeEEeEEEEceEEcCC-cccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeec
Q 040748 456 ----GSGAVSGITFSNIHMNNV-RNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYD 511 (584)
Q Consensus 456 ----~~G~V~NItf~NI~i~~v-~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~ 511 (584)
....|+||+|+||+.+.. ..++.+.. .+..+++||+|+||+++..
T Consensus 328 ~~~~s~v~I~nIt~~nI~gt~~~~~a~~l~c-----------s~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 328 SKYPSGVTLSDIYFKNIRGTSSSQVAVLLKC-----------SRGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred cCCCCCcEEEeEEEEEEEEEecCceEEEEEE-----------CCCCCEeeEEEEeeEEEec
Confidence 125689999999999765 33454532 2346789999999998755
No 15
>PLN03010 polygalacturonase
Probab=99.78 E-value=9.8e-17 Score=172.86 Aligned_cols=206 Identities=19% Similarity=0.240 Sum_probs=162.6
Q ss_pred eeEEEEeecCceEeeeeEecC---CCc-eeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEec-----C
Q 040748 321 IALRFFMSSNLTVQRLRIKDS---PQF-HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISN-----G 391 (584)
Q Consensus 321 ~~I~f~~s~nvtI~gvti~ns---~~~-~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~-----g 391 (584)
..+.|.+.+|++|.|--+.+. .+| .+.+..|+|++|+++++.+++.| .|++..|++|+|+++.|.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCC
Confidence 368889999999998666654 344 58899999999999999998876 4888999999999999986 5
Q ss_pred CCcEEeCCCceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecC--CCCeEEeEEEEce
Q 040748 392 DDCVSIGSGCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQG--GSGAVSGITFSNI 468 (584)
Q Consensus 392 DDgIai~sgs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g--~~G~V~NItf~NI 468 (584)
-|||.+.. ++||+|+||++..+ ++|+|++. ..++.|+++++.. .+||.|++.-. ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEee
Confidence 68999976 89999999999998 56999773 3578888888865 46999998532 2246999999999
Q ss_pred EEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeecCCCCCeEEec-C-----------CCCceecEEEEeEE
Q 040748 469 HMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFAC-S-----------DTVPCTNLTLSEVE 536 (584)
Q Consensus 469 ~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~~~~~~i~i~~-~-----------~~~~~~nItf~NI~ 536 (584)
+|.+..++++|+.+.+ ..+.++||+|+||++..... ++.+.. + ....++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G---------~~G~v~nItf~nI~m~~v~~--pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG---------GQGYARNISFENITLINTKN--PIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC---------CCEEEEEeEEEeEEEecCCc--cEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999998743 35789999999999987643 565532 1 12357999999999
Q ss_pred EEcCCCCccccceeec
Q 040748 537 LLPAKGDLVSDPFCWN 552 (584)
Q Consensus 537 i~~~~g~~~~~~~c~n 552 (584)
.+..... ...+.|+.
T Consensus 346 GT~~~~~-~i~l~Cs~ 360 (409)
T PLN03010 346 GTTSNEN-AITLKCSA 360 (409)
T ss_pred EEeCCCc-cEEEEeCC
Confidence 9865432 34456643
No 16
>PLN02155 polygalacturonase
Probab=99.75 E-value=3.4e-16 Score=168.16 Aligned_cols=217 Identities=15% Similarity=0.205 Sum_probs=164.9
Q ss_pred eEEEEeecCceEeeeeEecC--CC--------------ceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEc
Q 040748 322 ALRFFMSSNLTVQRLRIKDS--PQ--------------FHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYN 385 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns--~~--------------~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n 385 (584)
++.|.+.+++.|.+=+|... .+ ..+.+..|++++|+++++.+++.| -+++..|++|+|++
T Consensus 108 wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w----~i~~~~~~nv~i~~ 183 (394)
T PLN02155 108 WILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVS----HMTLNGCTNVVVRN 183 (394)
T ss_pred eEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCe----EEEEECeeeEEEEE
Confidence 57778888888877333211 11 137899999999999999998876 48889999999999
Q ss_pred eEEec-----CCCcEEeCCCceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecC--CC
Q 040748 386 SVISN-----GDDCVSIGSGCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQG--GS 457 (584)
Q Consensus 386 ~~i~~-----gDDgIai~sgs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g--~~ 457 (584)
+.|.+ .-|||.+.+ ++||+|+||++..+ ++|+|++ +.+||+|+|+++.. .+|+.|++... ..
T Consensus 184 v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIaik~--------gs~nI~I~n~~c~~-GhGisIGS~g~~~~~ 253 (394)
T PLN02155 184 VKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVAIGP--------GTRNFLITKLACGP-GHGVSIGSLAKELNE 253 (394)
T ss_pred EEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEEcCC--------CCceEEEEEEEEEC-CceEEeccccccCCC
Confidence 99976 348999876 89999999999998 5699965 35899999999986 57999998621 35
Q ss_pred CeEEeEEEEceEEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeecCCCCCeEEe---cC---------CCC
Q 040748 458 GAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFA---CS---------DTV 525 (584)
Q Consensus 458 G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~~~~~~i~i~---~~---------~~~ 525 (584)
+.|+||+++|++|.+..++++|+++.+ ...+.++||+|+||++..... ++.+. |. ...
T Consensus 254 ~~V~nV~v~n~~~~~t~~GirIKT~~~--------~~gG~v~nI~f~ni~m~~v~~--pI~i~q~Y~~~~~~~~~~~s~v 323 (394)
T PLN02155 254 DGVENVTVSSSVFTGSQNGVRIKSWAR--------PSTGFVRNVFFQDLVMKNVEN--PIIIDQNYCPTHEGCPNEYSGV 323 (394)
T ss_pred CcEEEEEEEeeEEeCCCcEEEEEEecC--------CCCEEEEEEEEEeEEEcCccc--cEEEEecccCCCCCCcCCCCCe
Confidence 789999999999999999999998632 235789999999999887643 55553 11 113
Q ss_pred ceecEEEEeEEEEcCCCCccccce------eecceecCCccccC
Q 040748 526 PCTNLTLSEVELLPAKGDLVSDPF------CWNAYGDLPTLTIP 563 (584)
Q Consensus 526 ~~~nItf~NI~i~~~~g~~~~~~~------c~nv~G~~~~~t~~ 563 (584)
.++||+|+||+.+..... ...+. |.|+.=..++++.+
T Consensus 324 ~i~~It~~ni~gt~~~~~-a~~l~c~~~~pc~~I~l~nv~i~~~ 366 (394)
T PLN02155 324 KISQVTYKNIQGTSATQE-AMKLVCSKSSPCTGITLQDIKLTYN 366 (394)
T ss_pred EEEEEEEEeeEEEecCCc-eEEEEeCCCCCEEEEEEEeeEEEec
Confidence 589999999999876432 22334 55555555555543
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.75 E-value=7.7e-17 Score=169.98 Aligned_cols=197 Identities=25% Similarity=0.327 Sum_probs=156.8
Q ss_pred CcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCC----Cc
Q 040748 269 SKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSP----QF 344 (584)
Q Consensus 269 ~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~----~~ 344 (584)
.++.++.+.+++|++|+|.-+.+. ..| .+.+.+|+|++|++++|.+.. ..
T Consensus 90 ~rp~~i~~~~~~~~~i~~i~~~ns---p~w-----------------------~~~~~~~~nv~i~~i~I~~~~~~~NtD 143 (326)
T PF00295_consen 90 RRPRLIRFNNCKNVTIEGITIRNS---PFW-----------------------HIHINDCDNVTISNITINNPANSPNTD 143 (326)
T ss_dssp SSSESEEEEEEEEEEEESEEEES----SSE-----------------------SEEEESEEEEEEESEEEEEGGGCTS--
T ss_pred cccceeeeeeecceEEEeeEecCC---Cee-----------------------EEEEEccCCeEEcceEEEecCCCCCcc
Confidence 467889999999999999544432 122 478899999999999998754 34
Q ss_pred eeeeeccccEEEEeEEEECCCCCCCCCceeecCcc-cEEEEceEEecCCCcEEeCC---C-----ceeEEEEecccCCC-
Q 040748 345 HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTN-GVEIYNSVISNGDDCVSIGS---G-----CYDVDIRNITCGPG- 414 (584)
Q Consensus 345 ~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~-nV~I~n~~i~~gDDgIai~s---g-----s~NV~I~Nc~~~~g- 414 (584)
+|++..|+||+|+|+.|.+. .|+|.+.+.+ +|+|+||++..+. ++++++ + -+||+|+||++.++
T Consensus 144 Gid~~~s~nv~I~n~~i~~g-----DD~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~~~i~nV~~~n~~i~~t~ 217 (326)
T PF00295_consen 144 GIDIDSSKNVTIENCFIDNG-----DDCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQNDIRNVTFENCTIINTD 217 (326)
T ss_dssp SEEEESEEEEEEESEEEESS-----SESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE--EEEEEEEEEEEEESES
T ss_pred eEEEEeeeEEEEEEeecccc-----cCcccccccccceEEEeEEEeccc-cceeeeccCCccccEEEeEEEEEEEeeccc
Confidence 89999999999999999994 5789888555 9999999998765 488865 2 37999999999886
Q ss_pred CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecC---------CCCeEEeEEEEceEEcCCc-ccEEEEEeec
Q 040748 415 HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQG---------GSGAVSGITFSNIHMNNVR-NPIIIDQYYC 484 (584)
Q Consensus 415 ~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g---------~~G~V~NItf~NI~i~~v~-~~I~I~~~y~ 484 (584)
.|+.|++.. +..+.++||+|+|++|.+..++|.|..... ....|+||+|+||+..... .++.+...
T Consensus 218 ~gi~iKt~~--~~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~-- 293 (326)
T PF00295_consen 218 NGIRIKTWP--GGGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCS-- 293 (326)
T ss_dssp EEEEEEEET--TTSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-B--
T ss_pred eEEEEEEec--ccceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEEC--
Confidence 789998853 246899999999999999989998876421 1247999999999998765 56666521
Q ss_pred CCCCCCCCCCCeeEEeEEEEeEEEee
Q 040748 485 LTKDCTNKTSAVYVSDILYSNIKGTY 510 (584)
Q Consensus 485 ~~~~~~~~~~~~~I~nItf~NI~gt~ 510 (584)
+...++||+|+||+++.
T Consensus 294 ---------~~~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 294 ---------PGSPCSNITFENVNITG 310 (326)
T ss_dssp ---------TTSSEEEEEEEEEEEES
T ss_pred ---------CcCcEEeEEEEeEEEEc
Confidence 34568999999999886
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.68 E-value=1.7e-14 Score=155.77 Aligned_cols=273 Identities=15% Similarity=0.139 Sum_probs=151.3
Q ss_pred cEEEEcCCeEEEeee---eeeecccCCc-eEEeee-eeecCCCCCCcccccCCcceeEEEeeeeceEEecCeEEeCCCCc
Q 040748 222 AVIHVPYGFSFMIQS---TIFTGPCQGS-IVFQVD-GTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHK 296 (584)
Q Consensus 222 ~~v~~p~G~tY~i~~---~~ltgp~ksn-vtL~l~-GtL~~s~~~~~~~~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ 296 (584)
.+|||++| +|.++. +.| .++ -+++++ |.+.. .++.+....+|+.|.|.|+++|....
T Consensus 233 ~~lYF~PG-Vy~ig~~~~l~L----~sn~~~VYlApGAyVk-------------GAf~~~~~~~nv~i~G~GVLSGe~Yv 294 (582)
T PF03718_consen 233 DTLYFKPG-VYWIGSDYHLRL----PSNTKWVYLAPGAYVK-------------GAFEYTDTQQNVKITGRGVLSGEQYV 294 (582)
T ss_dssp SEEEE-SE-EEEEBCTC-EEE-----TT--EEEE-TTEEEE-------------S-EEE---SSEEEEESSSEEE-TTS-
T ss_pred ceEEeCCc-eEEeCCCccEEE----CCCccEEEEcCCcEEE-------------EEEEEccCCceEEEEeeEEEcCccee
Confidence 69999999 899886 455 556 478887 65421 23344467899999999999998766
Q ss_pred cccCCCCCCCCCCCCCCCC----CCCCCeeEEEE---eecCceEeeeeEecCCCceeeeeccc----cEEEEeEEEECCC
Q 040748 297 WWDLPCKPHKGINGTTSPG----PCDSPIALRFF---MSSNLTVQRLRIKDSPQFHFRFDNCK----NVHIESIHITAPA 365 (584)
Q Consensus 297 ww~~~~~~~~g~~g~~~~g----~~~rP~~I~f~---~s~nvtI~gvti~ns~~~~I~i~~s~----nV~I~nv~I~~~~ 365 (584)
|-.... +++..+-+ +..+-+|+.+. .+.+++++|++|.++|+|.+.+.+.. +..|+|.++....
T Consensus 295 y~A~~~-----e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW 369 (582)
T PF03718_consen 295 YEADTE-----ESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAW 369 (582)
T ss_dssp TTBBCC-----CTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---
T ss_pred EeccCC-----CCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeE
Confidence 522110 01110000 11122355544 35689999999999999999998555 4899999999865
Q ss_pred CCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC-Cc--ceeeccCCCCCCCcEEeEEEEeeEEe
Q 040748 366 LSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG-HG--ISIGSLGNHNSRACVSNITVRDSVIK 442 (584)
Q Consensus 366 ~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g-~G--I~IGS~g~~~~~~~v~nI~I~Nit~~ 442 (584)
. .++|||.+. ++-+|+||++++.||+|.+.. .++.|+||+++.. .| |.+|. ....+++|.|+|+.++
T Consensus 370 ~-~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW-----~pr~isnv~veni~II 439 (582)
T PF03718_consen 370 Y-FQTDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGW-----TPRNISNVSVENIDII 439 (582)
T ss_dssp C-TT----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--C-----S---EEEEEEEEEEEE
T ss_pred E-eccCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeec-----cccccCceEEeeeEEE
Confidence 4 599999997 466889999999999997765 6999999999975 23 66654 3567999999999999
Q ss_pred cCC---------ceEEEEeecC----C------CCeEEeEEEEceEEcCCcc-cEEEEEeecCCCCCCCCCCCeeEEeEE
Q 040748 443 VSN---------NGVRIKTWQG----G------SGAVSGITFSNIHMNNVRN-PIIIDQYYCLTKDCTNKTSAVYVSDIL 502 (584)
Q Consensus 443 ~s~---------~GI~Iks~~g----~------~G~V~NItf~NI~i~~v~~-~I~I~~~y~~~~~~~~~~~~~~I~nIt 502 (584)
... .+|.-.+... . .-.|++++|+|+++++.-. .+.|.. ....+|+.
T Consensus 440 h~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~p-------------lqn~~nl~ 506 (582)
T PF03718_consen 440 HNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYP-------------LQNYDNLV 506 (582)
T ss_dssp E---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE---------------SEEEEEEE
T ss_pred eeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEee-------------cCCCcceE
Confidence 762 2332222111 0 1247999999999998543 334432 22344555
Q ss_pred EEeEEEe-----ecCCCCCeEEecC------CCCceecEEEEeEEEEcCC
Q 040748 503 YSNIKGT-----YDIRSPPMHFACS------DTVPCTNLTLSEVELLPAK 541 (584)
Q Consensus 503 f~NI~gt-----~~~~~~~i~i~~~------~~~~~~nItf~NI~i~~~~ 541 (584)
++|+... .-.. ....+... ......+|.|+|.+|.++.
T Consensus 507 ikN~~~~~w~~~~~~~-~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~~ 555 (582)
T PF03718_consen 507 IKNVHFESWNGLDITS-QVSGLKAYYNMANNKQNDTMGIIIENWTVGGEK 555 (582)
T ss_dssp EEEEEECEET-CGCST-T-EEE---CCTTT--B--EEEEEEEEEEETTEE
T ss_pred EEEeecccccCccccc-ceeeccccccccccccccccceEEEeEEECCEE
Confidence 5555533 1100 01111111 1234789999999987653
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.57 E-value=1.4e-13 Score=144.63 Aligned_cols=138 Identities=15% Similarity=0.224 Sum_probs=94.1
Q ss_pred EEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCC---CCCCCceeecCcccEEEEceEEecC-CCcEEeCCC
Q 040748 325 FFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPAL---SPNTDGIHIENTNGVEIYNSVISNG-DDCVSIGSG 400 (584)
Q Consensus 325 f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~---~~ntDGI~i~~S~nV~I~n~~i~~g-DDgIai~sg 400 (584)
+..+++|+|+++++.++..++|.+..|++++|+++++..... ....+||.+..|++++|++|+++.. |+||.++.
T Consensus 59 ~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~- 137 (314)
T TIGR03805 59 LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ- 137 (314)
T ss_pred EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-
Confidence 345788888888888887788888888888888888863221 1245788888888888888888764 44787765
Q ss_pred ceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCC-CeEEeEEEEceEEcC
Q 040748 401 CYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGS-GAVSGITFSNIHMNN 472 (584)
Q Consensus 401 s~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~-G~V~NItf~NI~i~~ 472 (584)
+++++|+||+++.. .||.+.. ..++.|+++.+.+...|+.+...++.. ..-++++++++++.+
T Consensus 138 s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~ 202 (314)
T TIGR03805 138 SQNIVVRNNVAEENVAGIEIEN---------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFD 202 (314)
T ss_pred CCCeEEECCEEccCcceEEEEe---------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEEC
Confidence 67888888888765 5666632 356777788887766677775443321 123566666666654
No 20
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=3.1e-11 Score=133.46 Aligned_cols=154 Identities=21% Similarity=0.281 Sum_probs=127.4
Q ss_pred CCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCC----CcEEeCCCceeEEEEecccCCC-Cc
Q 040748 342 PQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGD----DCVSIGSGCYDVDIRNITCGPG-HG 416 (584)
Q Consensus 342 ~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gD----DgIai~sgs~NV~I~Nc~~~~g-~G 416 (584)
.-..+.+..|+||++++++|.+++.| ++|+..|++++++|.+|.+.+ |||.+.+ |+||.|++|+|..+ +.
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~~----~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPLW----TVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCcE----EEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 34568899999999999999998765 799999999999999998644 5998877 99999999999988 55
Q ss_pred ceeeccCCCC---CCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecCCCCCCCCC
Q 040748 417 ISIGSLGNHN---SRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKT 493 (584)
Q Consensus 417 I~IGS~g~~~---~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~ 493 (584)
|+|++-.... -.+..++|+|+||.|.....++.+.++. .|.|+||++||+.|.+..++++|+....
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~--~ggv~ni~ved~~~~~~d~GLRikt~~~--------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM--GGGVQNITVEDCVMDNTDRGLRIKTNDG--------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeeec--CCceeEEEEEeeeeccCcceeeeeeecc---------
Confidence 8887743211 2356699999999999777788887754 4589999999999999999999998643
Q ss_pred CCeeEEeEEEEeEEEeec
Q 040748 494 SAVYVSDILYSNIKGTYD 511 (584)
Q Consensus 494 ~~~~I~nItf~NI~gt~~ 511 (584)
.++.++||+|++++....
T Consensus 381 ~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred cceeEEEEEEecccccCc
Confidence 347899999999986544
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.82 E-value=3.8e-07 Score=96.11 Aligned_cols=228 Identities=17% Similarity=0.220 Sum_probs=160.4
Q ss_pred HHHHHHHHhhcCCcEEEEcCCeEEEee-eeeeecccCCceEEeeee---e-ecCCCCCCcccccCCcceeEEEeeeeceE
Q 040748 209 FKMTWDSACQKDFAVIHVPYGFSFMIQ-STIFTGPCQGSIVFQVDG---T-IMPPDGPESWLQKNSKRQWLVFYKINELS 283 (584)
Q Consensus 209 iq~Ai~~a~~~~g~~v~~p~G~tY~i~-~~~ltgp~ksnvtL~l~G---t-L~~s~~~~~~~~~~~~~~lI~~~~~~NVt 283 (584)
||+|+++|. .|++|+|++| +|.++ .+.+. +++++|...| + |.+.... .....+ ...+++|+
T Consensus 1 iQ~Ai~~A~--~GDtI~l~~G-~Y~~~~~l~I~---~~~Iti~G~g~~~tvid~~~~~-------~~~~~i-~v~a~~Vt 66 (314)
T TIGR03805 1 LQEALIAAQ--PGDTIVLPEG-VFQFDRTLSLD---ADGVTIRGAGMDETILDFSGQV-------GGAEGL-LVTSDDVT 66 (314)
T ss_pred CHhHHhhCC--CCCEEEECCC-EEEcceeEEEe---CCCeEEEecCCCccEEecccCC-------CCCceE-EEEeCCeE
Confidence 699999764 4899999999 89874 45553 5788888865 3 4332211 001122 33578999
Q ss_pred EecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEec-------CCCceeeeeccccEEE
Q 040748 284 LQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKD-------SPQFHFRFDNCKNVHI 356 (584)
Q Consensus 284 I~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~n-------s~~~~I~i~~s~nV~I 356 (584)
|+|..+.+.. ...|.+.+|++++|+++++.. ...++|.+..|++++|
T Consensus 67 I~~ltI~~~~--------------------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I 120 (314)
T TIGR03805 67 LSDLAVENTK--------------------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLV 120 (314)
T ss_pred EEeeEEEcCC--------------------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEE
Confidence 9994432110 115777899999999999962 3568999999999999
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEE
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNIT 435 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~ 435 (584)
+++++... ..+||.+..|++++|++|++.....||.+.. +.++.|+++++... .||.+...-.. .....++++
T Consensus 121 ~~n~i~g~----~d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~-~~~~s~~~~ 194 (314)
T TIGR03805 121 EDSYVRGA----SDAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGL-PQPGGSNVR 194 (314)
T ss_pred ECCEEECC----CcccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCC-CcCCccceE
Confidence 99999884 2359999999999999999998888998864 78999999998864 67877433211 123457999
Q ss_pred EEeeEEecCCc-eE-----EEEeecCCCCeE----EeEEEEceEEcCCcc-cEEEEEe
Q 040748 436 VRDSVIKVSNN-GV-----RIKTWQGGSGAV----SGITFSNIHMNNVRN-PIIIDQY 482 (584)
Q Consensus 436 I~Nit~~~s~~-GI-----~Iks~~g~~G~V----~NItf~NI~i~~v~~-~I~I~~~ 482 (584)
|+++.+.+... .+ .+...+.+.|.+ +++.|+|++|.+... +|.+..+
T Consensus 195 v~~N~i~~n~~~n~~~~gn~v~~~~~g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~~~ 252 (314)
T TIGR03805 195 VFDNIIFDNNTPNFAPAGSIVASVPAGTGVVVMANRDVEIFGNVISNNDTANVLISSY 252 (314)
T ss_pred EECCEEECCCCCCCcccCCceecCCCCcEEEEEcccceEEECCEEeCCcceeEEEEec
Confidence 99999986531 11 121122333443 899999999988765 5666443
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.62 E-value=3.4e-07 Score=84.35 Aligned_cols=138 Identities=22% Similarity=0.332 Sum_probs=98.4
Q ss_pred EEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCce
Q 040748 323 LRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCY 402 (584)
Q Consensus 323 I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~ 402 (584)
|.+....+++|++++|.+....+|.+..+..++|++++|.. ...||.+....+++|++|.+.....++.+. ...
T Consensus 3 i~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~~ 76 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GSS 76 (158)
T ss_dssp EEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-C
T ss_pred EEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ecC
Confidence 56777888999999999999999999999999999999998 456899998899999999999877777776 578
Q ss_pred eEEEEecccCCC--CcceeeccCCCCCCCcEEeEEEEeeEEecCC-ceEEEEeecCCCCeEEeEEEEceEEcCCc-ccEE
Q 040748 403 DVDIRNITCGPG--HGISIGSLGNHNSRACVSNITVRDSVIKVSN-NGVRIKTWQGGSGAVSGITFSNIHMNNVR-NPII 478 (584)
Q Consensus 403 NV~I~Nc~~~~g--~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~-~GI~Iks~~g~~G~V~NItf~NI~i~~v~-~~I~ 478 (584)
+++|++|.+... .||.+.. ...+++|++|+|.+.. .|+.+.... -.+++|+++++.+.. .+|.
T Consensus 77 ~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~-----~~~~~i~~n~i~~~~~~gi~ 143 (158)
T PF13229_consen 77 NITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS-----SPNVTIENNTISNNGGNGIY 143 (158)
T ss_dssp S-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC-------S-EEECEEEECESSEEEE
T ss_pred CceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC-----CCeEEEEEEEEEeCcceeEE
Confidence 999999999875 3777632 2467899999999876 688876632 236778888887654 4554
Q ss_pred E
Q 040748 479 I 479 (584)
Q Consensus 479 I 479 (584)
+
T Consensus 144 ~ 144 (158)
T PF13229_consen 144 L 144 (158)
T ss_dssp -
T ss_pred E
Confidence 4
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.45 E-value=2.1e-06 Score=86.57 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=72.7
Q ss_pred EEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCC-----CCcee------ecCcccEEEEceEEecCC
Q 040748 324 RFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPN-----TDGIH------IENTNGVEIYNSVISNGD 392 (584)
Q Consensus 324 ~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~n-----tDGI~------i~~S~nV~I~n~~i~~gD 392 (584)
.|+.|+++++++|+|.++... +..|++|+++|+++.+.....+ -|++. |++++||.|+|+.+.+.|
T Consensus 93 ~fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD 169 (277)
T PF12541_consen 93 MFRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD 169 (277)
T ss_pred HhhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc
Confidence 467889999999999887654 4577888888888855332111 12222 245667777777666655
Q ss_pred CcEEeCCCceeEEEEecccCCCCcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcC
Q 040748 393 DCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNN 472 (584)
Q Consensus 393 DgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~ 472 (584)
. +.. ++||+|+|+++. |=.+|- ..+||++.||++.+.. |+ .++.|++++|++|.+
T Consensus 170 A---FWn-~eNVtVyDS~i~---GEYLgW--------~SkNltliNC~I~g~Q-pL---------CY~~~L~l~nC~~~~ 224 (277)
T PF12541_consen 170 A---FWN-CENVTVYDSVIN---GEYLGW--------NSKNLTLINCTIEGTQ-PL---------CYCDNLVLENCTMID 224 (277)
T ss_pred c---ccc-CCceEEEcceEe---eeEEEE--------EcCCeEEEEeEEeccC-cc---------EeecceEEeCcEeec
Confidence 2 322 566666666664 322211 2356666666665432 22 356677777777765
Q ss_pred C
Q 040748 473 V 473 (584)
Q Consensus 473 v 473 (584)
.
T Consensus 225 t 225 (277)
T PF12541_consen 225 T 225 (277)
T ss_pred c
Confidence 4
No 24
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.41 E-value=1e-05 Score=83.05 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=98.3
Q ss_pred EEEEeecCceEeeeeEec-CCCceeeeeccccEEEEeEEEECCCCC-CCCCceee-cCcccEEEEceEEec---------
Q 040748 323 LRFFMSSNLTVQRLRIKD-SPQFHFRFDNCKNVHIESIHITAPALS-PNTDGIHI-ENTNGVEIYNSVISN--------- 390 (584)
Q Consensus 323 I~f~~s~nvtI~gvti~n-s~~~~I~i~~s~nV~I~nv~I~~~~~~-~ntDGI~i-~~S~nV~I~n~~i~~--------- 390 (584)
+.+.-+.|.+|.|+--.. -..|++.+...+||.|+|++|.....+ ++-|+|.+ ..++||.|++|++..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h 174 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSH 174 (345)
T ss_pred EEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccC
Confidence 677778888888876322 245889999999999999999886532 34599999 689999999999976
Q ss_pred CCCcEEeCCCceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCc---eEEEEe
Q 040748 391 GDDCVSIGSGCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNN---GVRIKT 452 (584)
Q Consensus 391 gDDgIai~sgs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~---GI~Iks 452 (584)
+|..+.++.++..|+|++|.|+.. -++-+|+.-.....+.-..|++++|.|++... -+|++.
T Consensus 175 ~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~ 240 (345)
T COG3866 175 GDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGM 240 (345)
T ss_pred CCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeE
Confidence 455678888899999999999875 46666665432233556789999999998632 345544
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.39 E-value=1.1e-06 Score=88.68 Aligned_cols=100 Identities=20% Similarity=0.360 Sum_probs=78.2
Q ss_pred EEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCcee
Q 040748 324 RFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYD 403 (584)
Q Consensus 324 ~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~N 403 (584)
.+.+|+|+.|+++.+.. .-.|++|+||+|+|.++.+.+ .||.|+||+|.|+++.. =.++-.++|
T Consensus 132 f~m~s~ni~id~l~~~G----nY~Fq~~kNvei~ns~l~sKD--------AFWn~eNVtVyDS~i~G----EYLgW~SkN 195 (277)
T PF12541_consen 132 FFMNSENIYIDNLVLDG----NYSFQYCKNVEIHNSKLDSKD--------AFWNCENVTVYDSVING----EYLGWNSKN 195 (277)
T ss_pred eeeeccceEEeceEEeC----CEEeeceeeEEEEccEEeccc--------ccccCCceEEEcceEee----eEEEEEcCC
Confidence 34556666666666643 246789999999999999854 26889999999999954 234445799
Q ss_pred EEEEecccCCCCcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEE
Q 040748 404 VDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRI 450 (584)
Q Consensus 404 V~I~Nc~~~~g~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~I 450 (584)
+++.||++.+.+|++ +++|++++||+|.++..++.-
T Consensus 196 ltliNC~I~g~QpLC-----------Y~~~L~l~nC~~~~tdlaFEy 231 (277)
T PF12541_consen 196 LTLINCTIEGTQPLC-----------YCDNLVLENCTMIDTDLAFEY 231 (277)
T ss_pred eEEEEeEEeccCccE-----------eecceEEeCcEeecceeeeee
Confidence 999999999888887 378999999999988766644
No 26
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.34 E-value=6.3e-06 Score=75.86 Aligned_cols=130 Identities=24% Similarity=0.318 Sum_probs=87.2
Q ss_pred eEEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecC-CCcEEeCCC
Q 040748 322 ALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNG-DDCVSIGSG 400 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~g-DDgIai~sg 400 (584)
.|.+..+..++|++.+|.+ ...++.+....++.|+++++.... .|+.+..+..++|++|.+... +.||.+...
T Consensus 25 gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~ 98 (158)
T PF13229_consen 25 GIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-----SGIYVSGSSNITIENNRIENNGDYGIYISNS 98 (158)
T ss_dssp CEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCE
T ss_pred EEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-----ceEEEEecCCceecCcEEEcCCCccEEEecc
Confidence 5788888889999999999 778899999999999999999843 688999999999999999864 449988732
Q ss_pred ceeEEEEecccCCC--CcceeeccCCCCCCCcEEeEEEEeeEEecCC-ceEEEEeecCCCCeEEeEEEEceEE
Q 040748 401 CYDVDIRNITCGPG--HGISIGSLGNHNSRACVSNITVRDSVIKVSN-NGVRIKTWQGGSGAVSGITFSNIHM 470 (584)
Q Consensus 401 s~NV~I~Nc~~~~g--~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~-~GI~Iks~~g~~G~V~NItf~NI~i 470 (584)
..+++|++|+|... .|+.+... .-.+++|++|++.+.. .|+.+.... .++++.|++|
T Consensus 99 ~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i~~~~~~gi~~~~~~------~~~~v~~n~~ 158 (158)
T PF13229_consen 99 SSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTISNNGGNGIYLISGS------SNCTVTNNTF 158 (158)
T ss_dssp ECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEEECESSEEEE-TT-S------S--EEES-E-
T ss_pred CCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEEEeCcceeEEEECCC------CeEEEECCCC
Confidence 67899999999874 67777432 1347899999999765 677665421 2566666654
No 27
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.29 E-value=1.4e-05 Score=80.34 Aligned_cols=133 Identities=23% Similarity=0.252 Sum_probs=87.1
Q ss_pred EEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCce
Q 040748 323 LRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCY 402 (584)
Q Consensus 323 I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~ 402 (584)
|.+..++++.|++.++.+. ..++.+..+.+++|++++|... ..||++..+++++|+++.+.....||.+....
T Consensus 16 i~l~~~~~~~i~~n~i~~~-~~gi~~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~- 88 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNS-RDGIYVENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMGSS- 88 (236)
T ss_pred EEEEeCCCCEEEcCEEEeC-CCEEEEEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEcCC-
Confidence 5666777777777777653 3556777777777777777762 45777777777777777777666777776533
Q ss_pred eEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCC-cccEE
Q 040748 403 DVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNV-RNPII 478 (584)
Q Consensus 403 NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v-~~~I~ 478 (584)
+.+|+++++... .||.+.. ..+.+|+++++.+...||.+... .+.++++++|.+. ..+|.
T Consensus 89 ~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s-------~~n~I~~N~i~~n~~~Gi~ 150 (236)
T PF05048_consen 89 NNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS-------SNNTITGNTISNNTDYGIY 150 (236)
T ss_pred CcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC-------CCCEEECeEEeCCCccceE
Confidence 347777777653 4665522 23466777777766667776542 4556666666665 55666
No 28
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.28 E-value=9.5e-06 Score=87.99 Aligned_cols=146 Identities=18% Similarity=0.213 Sum_probs=108.5
Q ss_pred eEEEEeecCceEeeeeEecCC------CceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEe-cCCCc
Q 040748 322 ALRFFMSSNLTVQRLRIKDSP------QFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVIS-NGDDC 394 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns~------~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~-~gDDg 394 (584)
++.-...++|+|+|++|.++. ...|++..|++++|++++|..+. .-||.+..|+ ..|.++.|. +.+.+
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 455677899999999998865 23689999999999999999853 2489999998 777777776 46667
Q ss_pred EEeCCCceeEEEEecccCCC--Ccceeecc------------------------CCCC---CCCcEEeEEEEeeEEecCC
Q 040748 395 VSIGSGCYDVDIRNITCGPG--HGISIGSL------------------------GNHN---SRACVSNITVRDSVIKVSN 445 (584)
Q Consensus 395 Iai~sgs~NV~I~Nc~~~~g--~GI~IGS~------------------------g~~~---~~~~v~nI~I~Nit~~~s~ 445 (584)
|.++. +.++.|+++++.+. .||.|--. ++++ .-=...+++|+++++.++.
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 77655 78899999998874 35655422 1111 0012357889999999888
Q ss_pred -ceEEEEeecCCCCeEEeEEEEceEEcCCcc-cEEEE
Q 040748 446 -NGVRIKTWQGGSGAVSGITFSNIHMNNVRN-PIIID 480 (584)
Q Consensus 446 -~GI~Iks~~g~~G~V~NItf~NI~i~~v~~-~I~I~ 480 (584)
.||++.+ .+|+.|++++++++.+ ++...
T Consensus 262 ~dgI~~ns-------ss~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNS-------ASNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEc-------ccCcEEECcEeeeeeeeEEEEE
Confidence 7888876 4678888888888777 66544
No 29
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.27 E-value=2.3e-05 Score=78.79 Aligned_cols=114 Identities=24% Similarity=0.252 Sum_probs=97.0
Q ss_pred eEEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCc
Q 040748 322 ALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGC 401 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs 401 (584)
.+.+..+.+++|++.++.+. .++|++..+++++|+++.+.. +..||.+..+.+.+|+++.|.....||.+.. +
T Consensus 37 gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~-----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s 109 (236)
T PF05048_consen 37 GIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN-----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-S 109 (236)
T ss_pred EEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc-----cCCCEEEEcCCCcEEECCEecCCCceEEEee-C
Confidence 46889999999999999987 889999999999999999998 3489999988888999999998777998876 5
Q ss_pred eeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecC-CceEEEE
Q 040748 402 YDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVS-NNGVRIK 451 (584)
Q Consensus 402 ~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s-~~GI~Ik 451 (584)
.+.+|+++++... .||.|.. ..+.+|++++|.+. ..||.+.
T Consensus 110 ~~~~I~~N~i~~~~~GI~l~~---------s~~n~I~~N~i~~n~~~Gi~~~ 152 (236)
T PF05048_consen 110 SNNTISNNTISNNGYGIYLSS---------SSNNTITGNTISNNTDYGIYFL 152 (236)
T ss_pred CceEEECcEEeCCCEEEEEEe---------CCCCEEECeEEeCCCccceEEe
Confidence 6788999999743 6788743 15788999999988 7898843
No 30
>smart00656 Amb_all Amb_all domain.
Probab=98.17 E-value=6.7e-05 Score=73.64 Aligned_cols=143 Identities=16% Similarity=0.152 Sum_probs=95.8
Q ss_pred ceeeeeccccEEEEeEEEECCCCC--CCCCceeecCcccEEEEceEEecC----------CCcEEeCCCceeEEEEeccc
Q 040748 344 FHFRFDNCKNVHIESIHITAPALS--PNTDGIHIENTNGVEIYNSVISNG----------DDCVSIGSGCYDVDIRNITC 411 (584)
Q Consensus 344 ~~I~i~~s~nV~I~nv~I~~~~~~--~ntDGI~i~~S~nV~I~n~~i~~g----------DDgIai~sgs~NV~I~Nc~~ 411 (584)
.++.+..++||.|+|++|+..... .+.|+|.+.++++|.|++|.+..+ |..+.++.++.+|+|++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 567777788999999999986432 367999999999999999999876 44567788889999999999
Q ss_pred CCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCC-ceEEEEeecCCCCeEEeEEEEceEEcCCc-ccEEEEEeecCCCC
Q 040748 412 GPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSN-NGVRIKTWQGGSGAVSGITFSNIHMNNVR-NPIIIDQYYCLTKD 488 (584)
Q Consensus 412 ~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~-~GI~Iks~~g~~G~V~NItf~NI~i~~v~-~~I~I~~~y~~~~~ 488 (584)
..- -+.-||+.-.. ......+|++.+|.+.+.. +.-+++. | .+.+-|+.+.+.. +++.+.
T Consensus 112 ~~h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~~~R~P~~r~-----g---~~hv~NN~~~n~~~~~~~~~-------- 174 (190)
T smart00656 112 HNHWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNLRQRAPRVRF-----G---YVHVYNNYYTGWTSYAIGGR-------- 174 (190)
T ss_pred ecCCEEEEEccCCCc-cccccceEEEECcEEcCcccCCCcccC-----C---EEEEEeeEEeCcccEeEecC--------
Confidence 754 45667653211 1122458999999998643 2334421 1 3455555555543 333222
Q ss_pred CCCCCCCeeEEeEEEEeE
Q 040748 489 CTNKTSAVYVSDILYSNI 506 (584)
Q Consensus 489 ~~~~~~~~~I~nItf~NI 506 (584)
......+++=.|++.
T Consensus 175 ---~~~~v~~E~N~F~~~ 189 (190)
T smart00656 175 ---MGATILSEGNYFEAP 189 (190)
T ss_pred ---CCcEEEEECeEEECC
Confidence 123466666666653
No 31
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=98.13 E-value=0.00014 Score=74.38 Aligned_cols=56 Identities=13% Similarity=0.281 Sum_probs=40.8
Q ss_pred CceEEEecccccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeee----eeeecccCCceEEeeeeeecCC
Q 040748 187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQS----TIFTGPCQGSIVFQVDGTIMPP 258 (584)
Q Consensus 187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~----~~ltgp~ksnvtL~l~GtL~~s 258 (584)
...+++.+|- ..|=.++|++||.. +.+|.+|+|- .... +.+ ..+-+|.+.|.|++.
T Consensus 32 ~~~vni~dy~-----~~dwiasfkqaf~e-----~qtvvvpagl--~cenint~ifi----p~gktl~v~g~l~gn 91 (464)
T PRK10123 32 RQSVNINDYN-----PHDWIASFKQAFSE-----GQTVVVPAGL--VCDNINTGIFI----PPGKTLHILGSLRGN 91 (464)
T ss_pred CceeehhhcC-----cccHHHHHHHHhcc-----CcEEEecCcc--EecccccceEe----CCCCeEEEEEEeecC
Confidence 5889999996 34677889998864 6899999992 3322 222 677788888888753
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.10 E-value=0.00029 Score=72.62 Aligned_cols=160 Identities=19% Similarity=0.247 Sum_probs=111.1
Q ss_pred EEEeeeeceEEecCe---EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCC-----Cce
Q 040748 274 LVFYKINELSLQGGG---TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSP-----QFH 345 (584)
Q Consensus 274 I~~~~~~NVtI~G~G---~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~-----~~~ 345 (584)
+....+.|++|.|.| ++.| .-|.+....||.|++|+|.... +..
T Consensus 95 ~~iki~sNkTivG~g~~a~~~g----------------------------~gl~i~~a~NVIirNltf~~~~~~d~~~D~ 146 (345)
T COG3866 95 ITIKIGSNKTIVGSGADATLVG----------------------------GGLKIRDAGNVIIRNLTFEGFYQGDPNYDA 146 (345)
T ss_pred EEEeeccccEEEeeccccEEEe----------------------------ceEEEEeCCcEEEEeeEEEeeccCCCCCCc
Confidence 666778899999954 2221 1356777899999999998876 456
Q ss_pred eee-eccccEEEEeEEEECCCCC---CCCCce-eec-CcccEEEEceEEecCCCcEEeCCC--------ceeEEEEeccc
Q 040748 346 FRF-DNCKNVHIESIHITAPALS---PNTDGI-HIE-NTNGVEIYNSVISNGDDCVSIGSG--------CYDVDIRNITC 411 (584)
Q Consensus 346 I~i-~~s~nV~I~nv~I~~~~~~---~ntDGI-~i~-~S~nV~I~n~~i~~gDDgIai~sg--------s~NV~I~Nc~~ 411 (584)
|.+ ...+|+-|++|++...... ...||. ++. .+.+|+|.+|.+...+-+.-++.. -.+|++.+|+|
T Consensus 147 Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF 226 (345)
T COG3866 147 ISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF 226 (345)
T ss_pred EEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc
Confidence 888 7899999999999985321 233443 444 678999999999987777666552 35799999999
Q ss_pred CCC--C--cceeeccCCCCCCCcEEeEEEEeeEEecCC-ceEEEEeecCCCCeEEeEEEEceEEcCCcccEE
Q 040748 412 GPG--H--GISIGSLGNHNSRACVSNITVRDSVIKVSN-NGVRIKTWQGGSGAVSGITFSNIHMNNVRNPII 478 (584)
Q Consensus 412 ~~g--~--GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~-~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~ 478 (584)
.+. + .|++|. +++-|+.+.... .|+.+.. |.--.|..|++.|++...++.
T Consensus 227 kn~~qR~PriRfG~------------vHvyNNYy~~~~~~g~a~~i-----G~~AkiyvE~NyF~~~~~~~~ 281 (345)
T COG3866 227 KNLYQRGPRIRFGM------------VHVYNNYYEGNPKFGVAITI-----GTSAKIYVENNYFENGSEGLG 281 (345)
T ss_pred ccccccCCceEeeE------------EEEeccccccCcccceEEee-----ccceEEEEecceeccCCCCce
Confidence 874 3 377654 467777777433 3443322 122457888888887665543
No 33
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.07 E-value=3.4e-05 Score=84.68 Aligned_cols=177 Identities=18% Similarity=0.236 Sum_probs=99.9
Q ss_pred eeeeeccccEEEEeEEEECCCCCCCCCceeecCcc----cEEEEceEEec----CCCcEEeCCCceeEEEEecccCCC-C
Q 040748 345 HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTN----GVEIYNSVISN----GDDCVSIGSGCYDVDIRNITCGPG-H 415 (584)
Q Consensus 345 ~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~----nV~I~n~~i~~----gDDgIai~sgs~NV~I~Nc~~~~g-~ 415 (584)
++....++++.+++++|..++++ .+++.+.. +..|+|..+-. +.|||.+.. +-+|+||+++.. +
T Consensus 322 ~~~~~g~q~~~~~GiTI~~pP~~----Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nDD 394 (582)
T PF03718_consen 322 HISANGGQTLTCEGITINDPPFH----SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVNDD 394 (582)
T ss_dssp ECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS-
T ss_pred hhccCCcceEEEEeeEecCCCcc----eEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecCc
Confidence 34566888999999999998865 46666433 47888887653 678998876 448899999876 5
Q ss_pred cceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCC---------cccEEEEE-eecC
Q 040748 416 GISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNV---------RNPIIIDQ-YYCL 485 (584)
Q Consensus 416 GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v---------~~~I~I~~-~y~~ 485 (584)
+|.+ . -+++.|+|+++....+|-.|..- .....++||.|+|+.+-.. ..+|+-.. .|..
T Consensus 395 ~iKl--Y--------hS~v~v~~~ViWk~~Ngpiiq~G-W~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~ 463 (582)
T PF03718_consen 395 AIKL--Y--------HSNVSVSNTVIWKNENGPIIQWG-WTPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDD 463 (582)
T ss_dssp SEE------------STTEEEEEEEEEE-SSS-SEE---CS---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS
T ss_pred hhhe--e--------ecCcceeeeEEEecCCCCeEEee-ccccccCceEEeeeEEEeeeeecccCCCCceeEeccccccc
Confidence 6765 1 26899999999988776545321 1234699999999998533 12333222 3421
Q ss_pred CCCCCCCCCCeeEEeEEEEeEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCCC
Q 040748 486 TKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKG 542 (584)
Q Consensus 486 ~~~~~~~~~~~~I~nItf~NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~g 542 (584)
........+.-+|++++|+||++.+... ..|.-.+...-.||.++|+.+..-.|
T Consensus 464 ~~s~~~adp~~ti~~~~~~nv~~EG~~~---~l~ri~plqn~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 464 MASTKTADPSTTIRNMTFSNVRCEGMCP---CLFRIYPLQNYDNLVIKNVHFESWNG 517 (582)
T ss_dssp -SSS--BEEEEEEEEEEEEEEEEECCE----ECEEE--SEEEEEEEEEEEEECEET-
T ss_pred ccCCCCCCcccceeeEEEEeEEEecccc---eeEEEeecCCCcceEEEEeecccccC
Confidence 1111123345688999999999876532 22323344456788888888874433
No 34
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.04 E-value=0.00038 Score=75.54 Aligned_cols=26 Identities=15% Similarity=0.175 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEcCCeEEE
Q 040748 205 DTEAFKMTWDSACQKDFAVIHVPYGFSFM 233 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~ 233 (584)
+.++||+|+++|. .|++|++..| +|.
T Consensus 3 s~~~lq~Ai~~a~--pGD~I~L~~G-ty~ 28 (425)
T PF14592_consen 3 SVAELQSAIDNAK--PGDTIVLADG-TYK 28 (425)
T ss_dssp SHHHHHHHHHH----TT-EEEE-SE-EEE
T ss_pred CHHHHHHHHHhCC--CCCEEEECCc-eee
Confidence 5789999999764 5899999999 896
No 35
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=97.91 E-value=0.00036 Score=70.97 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHhhcCCcEEEEcCCeEEEeeeeeeeccc--CCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPC--QGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~~~ltgp~--ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
--+-|++|++.|. .|.+|+|-+| +|....-. +.|+ +++++|+.+..-++. .++
T Consensus 14 P~~Ti~~A~~~a~--~g~~i~l~~G-tY~~~~ge-~fPi~i~~gVtl~G~~~~kG~---------------------~~i 68 (246)
T PF07602_consen 14 PFKTITKALQAAQ--PGDTIQLAPG-TYSEATGE-TFPIIIKPGVTLIGNESNKGQ---------------------IDI 68 (246)
T ss_pred CHHHHHHHHHhCC--CCCEEEECCc-eeccccCC-cccEEecCCeEEeecccCCCc---------------------ceE
Confidence 4578999998754 4889999999 89875321 1121 677777765322110 122
Q ss_pred EEecCe---EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecC---CCceeeeeccccEEE
Q 040748 283 SLQGGG---TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDS---PQFHFRFDNCKNVHI 356 (584)
Q Consensus 283 tI~G~G---~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns---~~~~I~i~~s~nV~I 356 (584)
.+.|.+ +|+|.+... . -..+.+....+.+|++++|.|. ...++.+..+ +.+|
T Consensus 69 l~~g~~~~~~I~g~~~~~--------------------~-~qn~tI~~~~~~~i~GvtItN~n~~~g~Gi~Iess-~~tI 126 (246)
T PF07602_consen 69 LITGGGTGPTISGGGPDL--------------------S-GQNVTIILANNATISGVTITNPNIARGTGIWIESS-SPTI 126 (246)
T ss_pred EecCCceEEeEeccCccc--------------------c-ceeEEEEecCCCEEEEEEEEcCCCCcceEEEEecC-CcEE
Confidence 233211 233333111 0 1234556677777777777775 2223444333 4444
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEe-----CCCceeEEEEecccCC-CCcceeeccCCCCCCCc
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSI-----GSGCYDVDIRNITCGP-GHGISIGSLGNHNSRAC 430 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai-----~sgs~NV~I~Nc~~~~-g~GI~IGS~g~~~~~~~ 430 (584)
+|++|... ..+||.+ +....+++|+++.+.. ..||++-.. ...
T Consensus 127 ~Nntf~~~--------------------------~~~GI~v~g~~~~~~i~~~vI~GN~~~~~~~Gi~i~~~-----~~~ 175 (246)
T PF07602_consen 127 ANNTFTNN--------------------------GREGIFVTGTSANPGINGNVISGNSIYFNKTGISISDN-----AAP 175 (246)
T ss_pred EeeEEECC--------------------------ccccEEEEeeecCCcccceEeecceEEecCcCeEEEcc-----cCC
Confidence 55444441 2334433 1223556677777765 367777432 122
Q ss_pred EEeEEEEeeEEecCCceEEEEe
Q 040748 431 VSNITVRDSVIKVSNNGVRIKT 452 (584)
Q Consensus 431 v~nI~I~Nit~~~s~~GI~Iks 452 (584)
++ ..|+|+.+.+...||.+..
T Consensus 176 ~~-n~I~NN~I~~N~~Gi~~~~ 196 (246)
T PF07602_consen 176 VE-NKIENNIIENNNIGIVAIG 196 (246)
T ss_pred cc-ceeeccEEEeCCcCeEeec
Confidence 33 3568888887766876543
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.81 E-value=0.00016 Score=71.44 Aligned_cols=112 Identities=24% Similarity=0.266 Sum_probs=75.9
Q ss_pred cCceEeee----eEecCCCceeeee-ccccEEEEeEEEECC-----------CCCCCCCceeecCcccEEEEceEEecC-
Q 040748 329 SNLTVQRL----RIKDSPQFHFRFD-NCKNVHIESIHITAP-----------ALSPNTDGIHIENTNGVEIYNSVISNG- 391 (584)
Q Consensus 329 ~nvtI~gv----ti~ns~~~~I~i~-~s~nV~I~nv~I~~~-----------~~~~ntDGI~i~~S~nV~I~n~~i~~g- 391 (584)
.|-+|.|+ ++.+ +++.+. .++||.|+|++|..- ......|+|.+..+++|.|++|.+..+
T Consensus 21 snkTi~G~g~~~~i~~---~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~ 97 (200)
T PF00544_consen 21 SNKTIIGIGAGATIIG---GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGN 97 (200)
T ss_dssp SSEEEEEETTTTEEES---SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETT
T ss_pred CCcEEEEccCCeEEEC---ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccc
Confidence 45566652 2222 456665 889999999999971 123578999999999999999999755
Q ss_pred --------CCcEEeCCCceeEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecC
Q 040748 392 --------DDCVSIGSGCYDVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVS 444 (584)
Q Consensus 392 --------DDgIai~sgs~NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s 444 (584)
|..+.++.++.+|+|++|.|... .+..+|+......... .+|++..|.+.++
T Consensus 98 ~~~~~~~~Dg~idi~~~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 98 FECNSDSSDGLIDIKKGSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp S-GGGSSSSSSEEEESSTEEEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred cccccccCCceEEEEeCCceEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 55678888899999999999864 4555666322212233 8999999999864
No 37
>smart00656 Amb_all Amb_all domain.
Probab=97.72 E-value=0.0013 Score=64.51 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=93.2
Q ss_pred EEEEeecCceEeeeeEecCCC------ceeeeeccccEEEEeEEEECCCC----CCCCCce-eec-CcccEEEEceEEec
Q 040748 323 LRFFMSSNLTVQRLRIKDSPQ------FHFRFDNCKNVHIESIHITAPAL----SPNTDGI-HIE-NTNGVEIYNSVISN 390 (584)
Q Consensus 323 I~f~~s~nvtI~gvti~ns~~------~~I~i~~s~nV~I~nv~I~~~~~----~~ntDGI-~i~-~S~nV~I~n~~i~~ 390 (584)
|.+..++||.|++|+|++... .+|.+..+++|-|++|++..... ....||+ ++. .+.+|+|.+|.|..
T Consensus 34 l~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~~ 113 (190)
T smart00656 34 LTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHN 113 (190)
T ss_pred EEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEec
Confidence 566778999999999998533 57999999999999999998511 1114554 444 67899999999987
Q ss_pred CCCcEEeCCCc-------eeEEEEecccCCCCc--ceeeccCCCCCCCcEEeEEEEeeEEecCC-ceEEEEeecCCCCeE
Q 040748 391 GDDCVSIGSGC-------YDVDIRNITCGPGHG--ISIGSLGNHNSRACVSNITVRDSVIKVSN-NGVRIKTWQGGSGAV 460 (584)
Q Consensus 391 gDDgIai~sgs-------~NV~I~Nc~~~~g~G--I~IGS~g~~~~~~~v~nI~I~Nit~~~s~-~GI~Iks~~g~~G~V 460 (584)
.+-+..++.+. .+|++.+|.+.+..+ =.+. .+ .+.+-|+.+.+.. +++.+.. +
T Consensus 114 h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r-------~g---~~hv~NN~~~n~~~~~~~~~~--~----- 176 (190)
T smart00656 114 HWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR-------FG---YVHVYNNYYTGWTSYAIGGRM--G----- 176 (190)
T ss_pred CCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc-------CC---EEEEEeeEEeCcccEeEecCC--C-----
Confidence 66666666542 279999999976422 2221 11 5788899998765 4444332 2
Q ss_pred EeEEEEceEEcCC
Q 040748 461 SGITFSNIHMNNV 473 (584)
Q Consensus 461 ~NItf~NI~i~~v 473 (584)
..|.+|++.|+++
T Consensus 177 ~~v~~E~N~F~~~ 189 (190)
T smart00656 177 ATILSEGNYFEAP 189 (190)
T ss_pred cEEEEECeEEECC
Confidence 2567777777653
No 38
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.71 E-value=0.00076 Score=66.12 Aligned_cols=122 Identities=27% Similarity=0.426 Sum_probs=80.2
Q ss_pred eEeeeeEecCC------CceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEE
Q 040748 332 TVQRLRIKDSP------QFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVD 405 (584)
Q Consensus 332 tI~gvti~ns~------~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~ 405 (584)
.|++++|.... ..++++..++++.|+||++.+. +.+||.+..+....+.+.... .++.+..++.++.
T Consensus 95 ~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~----~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 167 (225)
T PF12708_consen 95 QIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENS----GGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNVI 167 (225)
T ss_dssp EEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEEE
T ss_pred EEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEcc----CccEEEEEccccCcEeecccc---eeeeeccceeEEE
Confidence 37777765432 2458888889999999999873 556777775555444443321 1233333446777
Q ss_pred EEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEec-CCceEEEEeecCCCCeEEeEEEEceEEcCCcccE
Q 040748 406 IRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKV-SNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPI 477 (584)
Q Consensus 406 I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~-s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I 477 (584)
+.||.+..+ .|+..++ ++++|+||.+.+ ...||.+... .+++++|++|+++..+|
T Consensus 168 ~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~-------~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 168 VNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGG-------SNIIISNNTIENCDDGI 224 (225)
T ss_dssp EECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEEC-------SEEEEEEEEEESSSEEE
T ss_pred ECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECC-------eEEEEEeEEEECCccCc
Confidence 788877765 5643322 689999999987 6678888762 34888888888877665
No 39
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.0058 Score=64.07 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=85.3
Q ss_pred EeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCC---CCCCCceeecCcccEEEEceEEecCCCcEEeCCCce
Q 040748 326 FMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPAL---SPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCY 402 (584)
Q Consensus 326 ~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~---~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~ 402 (584)
...+.-.|+...+.. ..++|.+..+.++.|++.+|....+ ..-.+||+++++.+++|..+.|.-+.|||.... ++
T Consensus 104 ~~at~A~Vr~N~l~~-n~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~ 181 (408)
T COG3420 104 RTATGAVVRHNDLIG-NSFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQ 181 (408)
T ss_pred cCcccceEEcccccc-cceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cc
Confidence 345556666666654 4578999999999999999988654 245789999999999999999999999999877 66
Q ss_pred eEEEEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEe
Q 040748 403 DVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKT 452 (584)
Q Consensus 403 NV~I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks 452 (584)
.-.|+++.+... -|+.. ....+..++++...+...|+.+..
T Consensus 182 ~~~~~gnr~~~~RygvHy---------M~t~~s~i~dn~s~~N~vG~ALMy 223 (408)
T COG3420 182 HNVFKGNRFRDLRYGVHY---------MYTNDSRISDNSSRDNRVGYALMY 223 (408)
T ss_pred cceecccchhheeeeEEE---------EeccCcEeecccccCCcceEEEEE
Confidence 667888877654 34322 123456677777776666666543
No 40
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=97.59 E-value=0.0053 Score=66.91 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=35.4
Q ss_pred cCCCCcchHHHHHHHHHHHhhcC---CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 198 VGDGISDDTEAFKMTWDSACQKD---FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 198 ~gdg~tDdT~Aiq~Ai~~a~~~~---g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
.+||.. |-.-||+||+++.... -.+|+|.+| +|...=.+-.. |.+++|+++|
T Consensus 87 a~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~G-vY~EkV~Ip~~--kp~ItL~G~G 141 (422)
T PRK10531 87 AGTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPG-TYQGTVYVPAA--APPITLYGTG 141 (422)
T ss_pred CCCCCC-CccCHHHHHhhccccCCCceEEEEEeCc-eeEEEEEeCCC--CceEEEEecC
Confidence 456654 5888999999753322 358999999 89865332112 6788888765
No 41
>PLN02665 pectinesterase family protein
Probab=97.54 E-value=0.0083 Score=64.52 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-..||+||+++.... -.+|+|.+| +|...=.+-.. |.+++|+.++.= ..
T Consensus 79 df~TIq~AIdaiP~~~~~r~vI~Ik~G-vY~EkV~Ip~~--kp~Itl~G~~~~-------------------------~t 130 (366)
T PLN02665 79 DFKTITDAIKSIPAGNTQRVIIDIGPG-EYNEKITIDRS--KPFVTLYGSPGA-------------------------MP 130 (366)
T ss_pred CccCHHHHHhhCcccCCceEEEEEeCc-EEEEEEEecCC--CCEEEEEecCCC-------------------------CC
Confidence 5778999999765432 358999999 89854322111 566777766420 01
Q ss_pred EEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC---------ce--eeeecc
Q 040748 283 SLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ---------FH--FRFDNC 351 (584)
Q Consensus 283 tI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~---------~~--I~i~~s 351 (584)
.|+..+.. .. + | .....-....++++..+||+|+|... .. +.+ ..
T Consensus 131 iIt~~~~a----~~-~-----------g-------T~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v-~g 186 (366)
T PLN02665 131 TLTFDGTA----AK-Y-----------G-------TVYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRI-SG 186 (366)
T ss_pred EEEECCcc----CC-C-----------C-------CcceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEE-cC
Confidence 22221100 00 0 0 01123445678899999999998632 11 222 35
Q ss_pred ccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCC-CCcceeeccCCCC--CC
Q 040748 352 KNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGP-GHGISIGSLGNHN--SR 428 (584)
Q Consensus 352 ~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~-g~GI~IGS~g~~~--~~ 428 (584)
+.+.+.||+|... .|-+.... ..-.++||+|...=|-| ++ .....+++|++.. ..+. .|...... ..
T Consensus 187 Dka~f~~C~f~G~-----QDTL~~~~-gr~yf~~CyIeG~VDFI-FG--~g~a~fe~C~i~s~~~~~-~g~ITA~~r~~~ 256 (366)
T PLN02665 187 DKAAFYNCRFIGF-----QDTLCDDK-GRHFFKDCYIEGTVDFI-FG--SGKSLYLNTELHVVGDGG-LRVITAQARNSE 256 (366)
T ss_pred CcEEEEcceeccc-----cceeEeCC-CCEEEEeeEEeecccee-cc--ccceeeEccEEEEecCCC-cEEEEcCCCCCC
Confidence 6677777777763 33333222 24567777777665533 32 2456777777764 1220 01111100 11
Q ss_pred CcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcC
Q 040748 429 ACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNN 472 (584)
Q Consensus 429 ~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~ 472 (584)
..-....|.||++.+....+.++=-+ +.-..|.|.|..|.+
T Consensus 257 ~~~~GfvF~~C~itg~~~~~yLGRpW---~~ysrvVf~~t~m~~ 297 (366)
T PLN02665 257 AEDSGFSFVHCKVTGTGTGAYLGRAW---MSRPRVVFAYTEMSS 297 (366)
T ss_pred CCCceEEEEeeEEecCCCceeecCCC---CCcceEEEEccccCC
Confidence 22346677777777643223332111 123456777766654
No 42
>PLN02480 Probable pectinesterase
Probab=97.53 E-value=0.0066 Score=64.84 Aligned_cols=81 Identities=7% Similarity=-0.043 Sum_probs=45.5
Q ss_pred EEEeecCceEeeeeEecCCC---------ceeee-eccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCC
Q 040748 324 RFFMSSNLTVQRLRIKDSPQ---------FHFRF-DNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDD 393 (584)
Q Consensus 324 ~f~~s~nvtI~gvti~ns~~---------~~I~i-~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDD 393 (584)
.....++++++||+|+|... ..+-+ ...+.+.+.||+|... .|-+.... ..-.++||+|...=|
T Consensus 127 vtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~-----QDTLy~~~-gR~yf~~C~IeG~VD 200 (343)
T PLN02480 127 FTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYST-----HNTLFDYK-GRHYYHSCYIQGSID 200 (343)
T ss_pred EEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecc-----cceeEeCC-CCEEEEeCEEEeeee
Confidence 34456888999999988721 22322 3456677777777663 23332222 235666677765544
Q ss_pred cEEeCCCceeEEEEecccCC
Q 040748 394 CVSIGSGCYDVDIRNITCGP 413 (584)
Q Consensus 394 gIai~sgs~NV~I~Nc~~~~ 413 (584)
-| ++ .-...++||++..
T Consensus 201 FI-FG--~g~a~fe~C~i~s 217 (343)
T PLN02480 201 FI-FG--RGRSIFHNCEIFV 217 (343)
T ss_pred EE-cc--ceeEEEEccEEEE
Confidence 22 22 2456677776653
No 43
>PLN02682 pectinesterase family protein
Probab=97.51 E-value=0.012 Score=63.36 Aligned_cols=46 Identities=22% Similarity=0.194 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
|-.-||+||+++.... -.+|+|.+| +|...=.+-.. |.+++|+++|
T Consensus 81 df~TIQ~AIdavP~~~~~r~vI~Ik~G-~Y~EkV~Ip~~--k~~Itl~G~g 128 (369)
T PLN02682 81 DFTTIQAAIDSLPVINLVRVVIKVNAG-TYREKVNIPPL--KAYITLEGAG 128 (369)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeeEEEEEecc--CceEEEEecC
Confidence 5778999999765432 358999999 89755322112 6778887775
No 44
>PLN02773 pectinesterase
Probab=97.47 E-value=0.0085 Score=63.33 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=32.3
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
||.. |-.-||+||+++.... -.+|+|.+| +|... +.+... +.+++|..++
T Consensus 12 dGsG-df~TIq~Aida~P~~~~~~~~I~Ik~G-~Y~E~-V~I~~~-k~~itl~G~~ 63 (317)
T PLN02773 12 DGSG-DYCTVQDAIDAVPLCNRCRTVIRVAPG-VYRQP-VYVPKT-KNLITLAGLS 63 (317)
T ss_pred CCCC-CccCHHHHHhhchhcCCceEEEEEeCc-eEEEE-EEECcC-CccEEEEeCC
Confidence 3443 4788999999875432 358999999 89754 222111 4567777753
No 45
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=97.43 E-value=0.015 Score=65.23 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=107.5
Q ss_pred CCCcchHHHHHHHHHHHhhcC---CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEE
Q 040748 200 DGISDDTEAFKMTWDSACQKD---FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVF 276 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~---g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~ 276 (584)
||.. |..-||+||+++.... -.+|+|.+| +|...=.+-.. |.+++|.++|.
T Consensus 232 dGsG-~f~TIq~AI~a~~~~~~~~r~vI~Ik~G-vY~E~V~I~~~--k~nItl~G~g~---------------------- 285 (529)
T PLN02170 232 DGSG-THKTIGEALLSTSLESGGGRTVIYLKAG-TYHENLNIPTK--QKNVMLVGDGK---------------------- 285 (529)
T ss_pred CCCC-chhhHHHHHHhcccccCCceEEEEEeCC-eeEEEEecCCC--CceEEEEEcCC----------------------
Confidence 4443 5888999999654321 368999999 89754322111 56777777653
Q ss_pred eeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eee-eecc
Q 040748 277 YKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFR-FDNC 351 (584)
Q Consensus 277 ~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~-i~~s 351 (584)
++..|+|... .+.| | . .-...-.....+++..+|++|+|.... .+- ....
T Consensus 286 ---~~TiIt~~~~-~~~g--~-~------------------T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~g 340 (529)
T PLN02170 286 ---GKTVIVGSRS-NRGG--W-T------------------TYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGS 340 (529)
T ss_pred ---CCeEEEeCCc-CCCC--C-c------------------cccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecC
Confidence 1112233100 0001 0 0 001134556788899999999997421 121 2245
Q ss_pred ccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC----CcceeeccCCCCC
Q 040748 352 KNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG----HGISIGSLGNHNS 427 (584)
Q Consensus 352 ~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g----~GI~IGS~g~~~~ 427 (584)
+.+.+.+|+|... .|-+..... .-.+++|+|...=|-| ++ .....++||.+..- ..-.|-..+. ..
T Consensus 341 Dr~~fy~C~f~Gy-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-FG--~a~avFq~C~I~~~~~~~~~g~ITAq~R-~~ 410 (529)
T PLN02170 341 DKSVVYRCSVEGY-----QDSLYTHSK-RQFYRETDITGTVDFI-FG--NSAVVFQSCNIAARKPSGDRNYVTAQGR-SD 410 (529)
T ss_pred CcEEEEeeeEecc-----CCcceeCCC-CEEEEeeEEcccccee-cc--cceEEEeccEEEEecCCCCceEEEecCC-CC
Confidence 6677777777773 333333322 3466777777655533 32 34567777776531 1111111110 11
Q ss_pred CCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcC
Q 040748 428 RACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNN 472 (584)
Q Consensus 428 ~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~ 472 (584)
...-..+.|.||++.... -..++=-+ ..-..+.|.+..|.+
T Consensus 411 ~~~~~Gfvf~~C~it~~~-~~yLGRPW---~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 411 PNQNTGISIHNCRITAES-MTYLGRPW---KEYSRTVVMQSFIDG 451 (529)
T ss_pred CCCCceEEEEeeEEecCC-ceeeeCCC---CCCceEEEEecccCC
Confidence 223356777777776543 12222101 123456666666654
No 46
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=97.42 E-value=0.0066 Score=68.76 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCcchHHHHHHHHHHHhhcC---CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 200 DGISDDTEAFKMTWDSACQKD---FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~---g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
||.. |-.-||+||+++.... -.+|||.+| +|...=.+-.. +.+++|.++|
T Consensus 248 dGsg-~f~TIq~Av~a~p~~~~~~r~vI~vk~G-vY~E~V~i~~~--k~~v~l~G~g 300 (553)
T PLN02708 248 DGNC-CYKTVQEAVNAAPDNNGDRKFVIRIKEG-VYEETVRVPLE--KKNVVFLGDG 300 (553)
T ss_pred CCCC-CccCHHHHHHhhhhccCCccEEEEEeCc-eEEeeeeecCC--CccEEEEecC
Confidence 4443 5788999999875521 359999999 89864222111 5677777765
No 47
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.25 E-value=0.012 Score=66.33 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=81.6
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEe
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFY 277 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~ 277 (584)
||.. |-.-||+||+++.... ..+|+|.+| +|...=.+-.. +.+++|.++|.
T Consensus 239 dGsG-~f~TIq~Av~a~p~~~~~r~vI~Vk~G-vY~E~V~I~~~--k~~i~l~G~g~----------------------- 291 (537)
T PLN02506 239 DGSG-HYRTITEAINEAPNHSNRRYIIYVKKG-VYKENIDMKKK--KTNIMLVGDGI----------------------- 291 (537)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCC-eeeEEEeccCC--CceEEEEEcCC-----------------------
Confidence 4443 5788999999765432 359999999 89765433212 56676666642
Q ss_pred eeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eee-eeccc
Q 040748 278 KINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFR-FDNCK 352 (584)
Q Consensus 278 ~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~-i~~s~ 352 (584)
....|++.... ..| | .. .+ ..-.....+++..+||+|+|.... .+- ....+
T Consensus 292 --~~tiIt~~~~~-~~g--~-~T-----------------~~-saT~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D 347 (537)
T PLN02506 292 --GQTVVTGNRNF-MQG--W-TT-----------------FR-TATVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSD 347 (537)
T ss_pred --CCeEEEeCccc-cCC--C-Cc-----------------cc-ceEEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCC
Confidence 11122221100 001 0 00 01 133456788899999999986421 111 12356
Q ss_pred cEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccC
Q 040748 353 NVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCG 412 (584)
Q Consensus 353 nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~ 412 (584)
.+.+.+|+|... .|-+..... .-..++|+|...=|-| ++ .....++||.+.
T Consensus 348 ~~~fy~C~~~G~-----QDTLy~~~~-rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~ 398 (537)
T PLN02506 348 QSAFYRCSMEGY-----QDTLYAHSL-RQFYRECEIYGTIDFI-FG--NGAAVLQNCKIY 398 (537)
T ss_pred cEEEEcceeecc-----cccceecCC-ceEEEeeEEecccceE-cc--CceeEEeccEEE
Confidence 666667766663 233332222 3466666666554422 22 245666666664
No 48
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.22 E-value=0.017 Score=65.56 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=111.7
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-.-||+||+++.... -.+|||.+| +|... +.+... +.+++|.++|.= ..
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~G-vY~E~-V~i~~~-k~~i~~~G~g~~-------------------------~t 320 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKG-VYFEN-VRVEKK-KWNVVMVGDGMS-------------------------KT 320 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-ceEEE-EEecCC-CCeEEEEecCCC-------------------------CC
Confidence 5778999999765432 359999999 89764 322211 566777776521 01
Q ss_pred EEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eee-eeccccEEE
Q 040748 283 SLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFR-FDNCKNVHI 356 (584)
Q Consensus 283 tI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~-i~~s~nV~I 356 (584)
.|+|.. ..||.. .| + ..-.....+++..+|++|+|.... .+- ....+...+
T Consensus 321 iIt~~~~~~dg~~-t~---------------------~-saT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~f 377 (565)
T PLN02468 321 IVSGSLNFVDGTP-TF---------------------S-TATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVF 377 (565)
T ss_pred EEEeCCccCCCCC-cc---------------------c-eeeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEE
Confidence 222210 111110 00 1 123344578899999999986432 222 235677888
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC-----CcceeeccCCCCCCCcE
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG-----HGISIGSLGNHNSRACV 431 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g-----~GI~IGS~g~~~~~~~v 431 (584)
.+|+|... .|-+..... .-..++|+|...=|-| + |...+.++||.+..- ..-.|-..+. .+...-
T Consensus 378 y~c~~~G~-----QDTLy~~~~-rq~y~~C~I~GtvDFI-F--G~a~avfq~c~i~~~~~~~~~~~~iTA~~r-~~~~~~ 447 (565)
T PLN02468 378 YRCTMDAF-----QDTLYAHAQ-RQFYRECNIYGTVDFI-F--GNSAVVFQNCNILPRRPMKGQQNTITAQGR-TDPNQN 447 (565)
T ss_pred EEeEEEec-----cchhccCCC-ceEEEeeEEeccccee-e--ccceEEEeccEEEEecCCCCCCceEEecCC-CCCCCC
Confidence 88888874 333443333 3468888887665633 3 336778888887531 1111211111 122344
Q ss_pred EeEEEEeeEEecCCceEEEEeecCCC-CeEEeEEEEceEEcC
Q 040748 432 SNITVRDSVIKVSNNGVRIKTWQGGS-GAVSGITFSNIHMNN 472 (584)
Q Consensus 432 ~nI~I~Nit~~~s~~GI~Iks~~g~~-G~V~NItf~NI~i~~ 472 (584)
..+.|.||++......-..+.+-|+. .....+.|.+..|..
T Consensus 448 ~G~vf~~c~i~~~~~~~~~~~yLGRPW~~~sr~v~~~s~~~~ 489 (565)
T PLN02468 448 TGISIQNCTILPLGDLTSVKTFLGRPWKNYSTTVIMHSMMGS 489 (565)
T ss_pred ceEEEEccEEecCCCccccceeeecCCCCCceEEEEecccCC
Confidence 57888888888643211122222221 123456677766654
No 49
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.016 Score=66.03 Aligned_cols=184 Identities=13% Similarity=0.129 Sum_probs=97.0
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEe
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFY 277 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~ 277 (584)
||.. |..-||+||+++.... -.+|||.+| +|....+.+... |.+++|.++|.
T Consensus 279 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~~v~i~~~-k~ni~l~G~g~----------------------- 332 (587)
T PLN02484 279 DGNG-TFKTISEAIKKAPEHSSRRTIIYVKAG-RYEENNLKVGRK-KTNLMFIGDGK----------------------- 332 (587)
T ss_pred CCCC-CcccHHHHHHhccccCCCcEEEEEeCC-EEEEEEEEECCC-CceEEEEecCC-----------------------
Confidence 4443 5778999999765432 368999999 898854443211 56777777653
Q ss_pred eeeceEEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC----ceeee-ecc
Q 040748 278 KINELSLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ----FHFRF-DNC 351 (584)
Q Consensus 278 ~~~NVtI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~----~~I~i-~~s 351 (584)
....|+|.- ..++.+ .| -..-.....+++..+||+|+|... ..+-+ ...
T Consensus 333 --~~TiIt~~~~~~~~~~-t~----------------------~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~ 387 (587)
T PLN02484 333 --GKTVITGGKSIFDNLT-TF----------------------HTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGA 387 (587)
T ss_pred --CCeEEecCCcccCCCc-cc----------------------ceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecC
Confidence 011222210 001100 00 113344567888899999988642 12222 245
Q ss_pred ccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC-----CcceeeccCCCC
Q 040748 352 KNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG-----HGISIGSLGNHN 426 (584)
Q Consensus 352 ~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g-----~GI~IGS~g~~~ 426 (584)
+...+.+|+|... .|-+..... .-.+++|+|...=|-| + |.....++||.+..- ..-.|-..+ +.
T Consensus 388 D~~~fy~C~~~G~-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~~ITAq~-r~ 457 (587)
T PLN02484 388 DHAVVYRCNIIGY-----QDTLYVHSN-RQFFRECDIYGTVDFI-F--GNAAVVLQNCSIYARKPMAQQKNTITAQN-RK 457 (587)
T ss_pred CcEEEEeeeEecc-----CcccccCCC-cEEEEecEEEecccee-c--ccceeEEeccEEEEecCCCCCceEEEecC-CC
Confidence 6677777777763 333333322 3467777776655532 2 235667777776531 111111111 00
Q ss_pred CCCcEEeEEEEeeEEecC
Q 040748 427 SRACVSNITVRDSVIKVS 444 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s 444 (584)
....-..+.|.||++...
T Consensus 458 ~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 458 DPNQNTGISIHACRILAA 475 (587)
T ss_pred CCCCCcEEEEEeeEEecC
Confidence 122345677777777653
No 50
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.21 E-value=0.019 Score=64.95 Aligned_cols=183 Identities=17% Similarity=0.151 Sum_probs=101.7
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEe
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFY 277 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~ 277 (584)
||.. |-..||+||+++.... -.+|+|.+| +|...=. +... +.+++|.++|.=
T Consensus 243 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-~Y~E~V~-i~~~-k~~i~l~G~g~~---------------------- 296 (548)
T PLN02301 243 DGSG-KYKTVKEAVASAPDNSKTRYVIYVKKG-TYKENVE-IGKK-KKNLMLVGDGMD---------------------- 296 (548)
T ss_pred CCCC-CcccHHHHHHhhhhcCCceEEEEEeCc-eeeEEEE-ecCC-CceEEEEecCCC----------------------
Confidence 4443 5888999999765432 258999999 8976432 2111 567777776520
Q ss_pred eeeceEEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-ecc
Q 040748 278 KINELSLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNC 351 (584)
Q Consensus 278 ~~~NVtI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s 351 (584)
...|+|.. ..||.+ .--..-.....+++..+|++|+|.... .+-+ ..+
T Consensus 297 ---~TiIt~~~~~~dg~~-----------------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~ 350 (548)
T PLN02301 297 ---STIITGSLNVIDGST-----------------------TFRSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSA 350 (548)
T ss_pred ---CcEEEeCCccCCCCC-----------------------ceeeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecC
Confidence 01222210 011110 001134455678899999999986432 2222 246
Q ss_pred ccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC---Cc--ceeeccCCCC
Q 040748 352 KNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG---HG--ISIGSLGNHN 426 (584)
Q Consensus 352 ~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~ 426 (584)
+...+.+|+|... .|-+..... .-..+||+|...=|-| + |.....++||++..- .+ -.|-..+ +.
T Consensus 351 D~~~fy~C~~~G~-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-F--G~a~avfq~c~i~~~~~~~~~~~~iTAqg-r~ 420 (548)
T PLN02301 351 DQAVINRCRIDAY-----QDTLYAHSL-RQFYRDSYITGTVDFI-F--GNAAVVFQNCKIVARKPMAGQKNMVTAQG-RT 420 (548)
T ss_pred CcEEEEeeeeeec-----cccceecCC-cEEEEeeEEEecccee-c--ccceeEEeccEEEEecCCCCCCceEEecC-CC
Confidence 7788888888874 333443333 3578888887665633 3 235677888877541 11 1111111 11
Q ss_pred CCCcEEeEEEEeeEEecC
Q 040748 427 SRACVSNITVRDSVIKVS 444 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s 444 (584)
....-..+.|.||++...
T Consensus 421 ~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 421 DPNQNTGISIQKCDIIAS 438 (548)
T ss_pred CCCCCCEEEEEeeEEecC
Confidence 223345778888888754
No 51
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=97.20 E-value=0.016 Score=65.75 Aligned_cols=208 Identities=16% Similarity=0.185 Sum_probs=110.0
Q ss_pred hHHHHHHHHHHHhhcC-----CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeee
Q 040748 205 DTEAFKMTWDSACQKD-----FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKI 279 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~-----g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~ 279 (584)
|-.-||+||+++.... -.+|||.+| +|...=.+-.. |.+++|+++|.
T Consensus 261 ~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G-~Y~E~V~i~~~--k~~i~l~G~g~------------------------- 312 (566)
T PLN02713 261 NFTTINDAVAAAPNNTDGSNGYFVIYVTAG-VYEEYVSIPKN--KKYLMMIGDGI------------------------- 312 (566)
T ss_pred CCCCHHHHHHhhhcccCCCCceEEEEEcCc-EEEEEEEecCC--CceEEEEecCC-------------------------
Confidence 5788999999764421 258999999 89764332112 56777777652
Q ss_pred eceEEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eee-eecccc
Q 040748 280 NELSLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFR-FDNCKN 353 (584)
Q Consensus 280 ~NVtI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~-i~~s~n 353 (584)
....|+|.. ..|| |.. .+ ..-.....+++..+|++|+|.... .+- ....+.
T Consensus 313 ~~TiIt~~~~~~~g-----~~T-----------------~~-SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~ 369 (566)
T PLN02713 313 NQTVITGNRSVVDG-----WTT-----------------FN-SATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADL 369 (566)
T ss_pred CCcEEEcCCcccCC-----Ccc-----------------cc-ceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCc
Confidence 111222211 0111 110 01 123444678999999999996421 222 234667
Q ss_pred EEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC---Cc--ceeeccCCCCCC
Q 040748 354 VHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG---HG--ISIGSLGNHNSR 428 (584)
Q Consensus 354 V~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~~~ 428 (584)
..+.+|+|... .|-+..... .-.+++|+|...=|-| + |...+.++||.+..- .+ -.|-..+. ...
T Consensus 370 ~~fy~C~~~G~-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~~~~~~~~~~~iTAq~r-~~~ 439 (566)
T PLN02713 370 STFYSCSFEAY-----QDTLYTHSL-RQFYRECDIYGTVDFI-F--GNAAVVFQNCNLYPRLPMQGQFNTITAQGR-TDP 439 (566)
T ss_pred EEEEeeeeccC-----CcceEECCC-CEEEEeeEEeccccee-c--ccceEEEeccEEEEecCCCCCcceeeecCC-CCC
Confidence 78888888773 344444332 4577888887655533 3 235677888877531 11 11111110 112
Q ss_pred CcEEeEEEEeeEEecCCceE----EEEeecCCC-CeEEeEEEEceEEcCC
Q 040748 429 ACVSNITVRDSVIKVSNNGV----RIKTWQGGS-GAVSGITFSNIHMNNV 473 (584)
Q Consensus 429 ~~v~nI~I~Nit~~~s~~GI----~Iks~~g~~-G~V~NItf~NI~i~~v 473 (584)
..-..+.|.||+|....... ..+.+-|+. ..-..+.|.+..|.+.
T Consensus 440 ~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~V~~~s~~~~~ 489 (566)
T PLN02713 440 NQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYSRTVVMQSYIDGL 489 (566)
T ss_pred CCCCEEEEEcCEEecCCcccccccccceeeecCCCCcceEEEEecccCCe
Confidence 33457788888887543100 111221211 1235566777666553
No 52
>PLN02916 pectinesterase family protein
Probab=97.19 E-value=0.018 Score=64.18 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHhhc-----CCcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeee
Q 040748 205 DTEAFKMTWDSACQK-----DFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKI 279 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~-----~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~ 279 (584)
|-.-||+||+++.+. .-.+|+|.+| +|...=.+-.. +.+++|.++|.=
T Consensus 198 ~f~TIq~AI~a~P~~~~~~~~r~vI~Ik~G-vY~E~V~I~~~--k~~i~l~G~g~~------------------------ 250 (502)
T PLN02916 198 THRTINQALAALSRMGKSRTNRVIIYVKAG-VYNEKVEIDRH--MKNVMFVGDGMD------------------------ 250 (502)
T ss_pred CccCHHHHHHhcccccCCCCceEEEEEeCc-eeeEEEEecCC--CceEEEEecCCC------------------------
Confidence 577899999976531 1258999999 89854222111 567777776520
Q ss_pred eceEEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-ecccc
Q 040748 280 NELSLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNCKN 353 (584)
Q Consensus 280 ~NVtI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s~n 353 (584)
...|++.- ..+|.. .--..-.....+++..+||+|+|.... .+-+ ..++.
T Consensus 251 -~TiIt~~~~~~~g~~-----------------------T~~SAT~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~ 306 (502)
T PLN02916 251 -KTIITNNRNVPDGST-----------------------TYSSATFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDL 306 (502)
T ss_pred -CcEEEeCCccCCCCc-----------------------ceeeEEEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCc
Confidence 11222210 001100 001134455677888899999886321 1211 23456
Q ss_pred EEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccC
Q 040748 354 VHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCG 412 (584)
Q Consensus 354 V~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~ 412 (584)
..+.+|+|... .|-+..... .-.+++|+|...=|-| ++ ...+.++||.+.
T Consensus 307 a~fy~C~f~G~-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-FG--~a~avFq~C~I~ 356 (502)
T PLN02916 307 SVFYRCSFKGY-----QDTLFVHSL-RQFYRDCHIYGTIDFI-FG--DAAVVFQNCDIF 356 (502)
T ss_pred EEEEeeeEecc-----CceeEeCCC-CEEEEecEEeccccee-cc--CceEEEecCEEE
Confidence 66666666663 333333322 3456666666554422 22 345566666654
No 53
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.18 E-value=0.026 Score=63.39 Aligned_cols=153 Identities=14% Similarity=0.099 Sum_probs=84.1
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEe
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFY 277 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~ 277 (584)
||.. |-..||+||+++.... -.+|+|.+| +|...=.+-.. +.+++|.++|.=
T Consensus 213 dGsG-~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~V~I~~~--k~~i~l~G~g~~---------------------- 266 (520)
T PLN02201 213 DGTG-NFTTIMDAVLAAPDYSTKRYVIYIKKG-VYLENVEIKKK--KWNIMMVGDGID---------------------- 266 (520)
T ss_pred CCCC-CccCHHHHHHhchhcCCCcEEEEEeCc-eeEEEEEecCC--CceEEEEecCCC----------------------
Confidence 4443 6888999999765422 368999999 89765332112 566777776520
Q ss_pred eeeceEEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC----ceeee-ecc
Q 040748 278 KINELSLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ----FHFRF-DNC 351 (584)
Q Consensus 278 ~~~NVtI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~----~~I~i-~~s 351 (584)
...|+|.. ..|| |.. . -..-.....+++..+|++|+|... ..+-+ ...
T Consensus 267 ---~TiIt~~~~~~~g-----~~T-----------------~-~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~ 320 (520)
T PLN02201 267 ---ATVITGNRSFIDG-----WTT-----------------F-RSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDS 320 (520)
T ss_pred ---CcEEEeCCccCCC-----Ccc-----------------c-ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcC
Confidence 11222210 0111 000 0 113344567889999999998643 12222 235
Q ss_pred ccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCC
Q 040748 352 KNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGP 413 (584)
Q Consensus 352 ~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~ 413 (584)
+...+.+|+|... .|-+..... .-..++|+|...=|-| ++ .....++||++..
T Consensus 321 D~~~fy~C~f~G~-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~ 373 (520)
T PLN02201 321 DLSVFYRCAMRGY-----QDTLYTHTM-RQFYRECRITGTVDFI-FG--DATAVFQNCQILA 373 (520)
T ss_pred CcEEEEeeeeecc-----CCeeEeCCC-CEEEEeeEEeecccEE-ec--CceEEEEccEEEE
Confidence 6677777777763 333433332 3466777776655533 32 3456677776653
No 54
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.18 E-value=0.021 Score=65.22 Aligned_cols=183 Identities=14% Similarity=0.168 Sum_probs=99.2
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEe
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFY 277 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~ 277 (584)
||.. |-..||+||+++.... -.+|||.+| +|...=.+-.. +.+++|.++|.
T Consensus 282 dGsG-~f~TI~~Av~a~p~~~~~r~vI~ik~G-vY~E~V~i~~~--k~ni~l~Gdg~----------------------- 334 (587)
T PLN02313 282 DGSG-DFTTVAAAVAAAPEKSNKRFVIHIKAG-VYRENVEVTKK--KKNIMFLGDGR----------------------- 334 (587)
T ss_pred CCCC-CCccHHHHHHhccccCCceEEEEEeCc-eeEEEEEeCCC--CCeEEEEecCC-----------------------
Confidence 4443 6888999999765432 359999999 89764332211 56677776653
Q ss_pred eeeceEEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-ecc
Q 040748 278 KINELSLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNC 351 (584)
Q Consensus 278 ~~~NVtI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s 351 (584)
....|+|.. ..||.. . .+ ..-.....+++..+|++|+|.... .+-+ ...
T Consensus 335 --~~TiIt~~~~~~~g~~-t---------------------~~-sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~ 389 (587)
T PLN02313 335 --GKTIITGSRNVVDGST-T---------------------FH-SATVAAVGERFLARDITFQNTAGPSKHQAVALRVGS 389 (587)
T ss_pred --CccEEEeCCcccCCCC-c---------------------ee-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecC
Confidence 111233310 111110 0 01 133445678899999999986432 2222 246
Q ss_pred ccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC---Cc--ceeeccCCCC
Q 040748 352 KNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG---HG--ISIGSLGNHN 426 (584)
Q Consensus 352 ~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~ 426 (584)
+...+.+|+|... .|-+..... .-..++|+|...=|-| + |...+.++||.+..- .| -.|-..+ +.
T Consensus 390 D~~~fy~C~~~g~-----QDTLy~~~~-rq~y~~c~I~GtvDFI-F--G~a~avfq~c~i~~r~~~~~~~~~iTAqg-r~ 459 (587)
T PLN02313 390 DFSAFYQCDMFAY-----QDTLYVHSN-RQFFVKCHITGTVDFI-F--GNAAAVLQDCDINARRPNSGQKNMVTAQG-RS 459 (587)
T ss_pred CcEEEEeeeEecc-----cchhccCCC-cEEEEeeEEeecccee-c--cceeEEEEccEEEEecCCCCCcceEEecC-CC
Confidence 6777788888763 333333332 3477777777665533 2 335677777777531 11 1121111 11
Q ss_pred CCCcEEeEEEEeeEEecC
Q 040748 427 SRACVSNITVRDSVIKVS 444 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s 444 (584)
+...-..+.|+||++...
T Consensus 460 ~~~~~tG~v~~~c~i~~~ 477 (587)
T PLN02313 460 DPNQNTGIVIQNCRIGGT 477 (587)
T ss_pred CCCCCceEEEEecEEecC
Confidence 223345677777777654
No 55
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.18 E-value=0.021 Score=64.64 Aligned_cols=179 Identities=15% Similarity=0.117 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-.-||+||+++.... -.+|+|.+| +|...=.+-.. +.+++|.++|.= ..
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~G-vY~E~V~i~~~--k~~i~l~G~g~~-------------------------~T 292 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREG-VYEENVEIPIY--KTNIVLIGDGSD-------------------------VT 292 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCc-eeEEEEecCCC--CccEEEEecCCC-------------------------ce
Confidence 5788999999765432 358999999 89764322111 567777776520 01
Q ss_pred EEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eee-eeccccEEE
Q 040748 283 SLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFR-FDNCKNVHI 356 (584)
Q Consensus 283 tI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~-i~~s~nV~I 356 (584)
.|+|.. ..|| |.. .+ ..-.....+++..+||+|+|.... .+- ...++.+.+
T Consensus 293 iIt~~~~~~~g-----~~T-----------------~~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~f 349 (541)
T PLN02416 293 FITGNRSVVDG-----WTT-----------------FR-SATLAVSGEGFLARDITIENTAGPEKHQAVALRVNADLVAL 349 (541)
T ss_pred EEeCCCccCCC-----CCc-----------------cc-eEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEE
Confidence 222211 0011 100 11 123444578899999999986432 111 124567777
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC---Cc--ceeeccCCCCCCCcE
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG---HG--ISIGSLGNHNSRACV 431 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~~~~~v 431 (584)
.+|+|...- |-+.... ..-.+++|+|...=|-| ++ ...+.++||++..- .| -.|-..+ +......
T Consensus 350 y~c~~~G~Q-----DTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~c~i~~~~~~~~~~~~iTA~~-r~~~~~~ 419 (541)
T PLN02416 350 YRCTINGYQ-----DTLYVHS-FRQFYRECDIYGTIDYI-FG--NAAVVFQACNIVSKMPMPGQFTVITAQS-RDTPDED 419 (541)
T ss_pred EcceEeccc-----chhccCC-CceEEEeeEEeecccee-ec--cceEEEeccEEEEecCCCCCceEEECCC-CCCCCCC
Confidence 777777743 3333322 24577777777655533 32 35667777777531 11 1111111 0112334
Q ss_pred EeEEEEeeEEecC
Q 040748 432 SNITVRDSVIKVS 444 (584)
Q Consensus 432 ~nI~I~Nit~~~s 444 (584)
..+.|.||++...
T Consensus 420 ~G~vf~~c~i~~~ 432 (541)
T PLN02416 420 TGISIQNCSILAT 432 (541)
T ss_pred CEEEEEeeEEecC
Confidence 5677777777653
No 56
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.17 E-value=0.023 Score=64.16 Aligned_cols=209 Identities=15% Similarity=0.149 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHhhc----CCcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeee
Q 040748 205 DTEAFKMTWDSACQK----DFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKIN 280 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~----~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~ 280 (584)
|-.-||+||+++... .-.+|+|.+| +|...=.+-.. |.+++|.++|.-
T Consensus 234 ~f~TIq~Ai~a~p~~~~~~~r~vI~Ik~G-~Y~E~V~i~~~--k~~i~l~G~g~~------------------------- 285 (539)
T PLN02995 234 HFNTVQAAIDVAGRRKVTSGRFVIYVKRG-IYQENINVRLN--NDDIMLVGDGMR------------------------- 285 (539)
T ss_pred CccCHHHHHHhcccccCCCceEEEEEeCC-EeEEEEEecCC--CCcEEEEEcCCC-------------------------
Confidence 678899999976421 2368999999 89876332112 678888877531
Q ss_pred ceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-eccccEE
Q 040748 281 ELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNCKNVH 355 (584)
Q Consensus 281 NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s~nV~ 355 (584)
...|+|.-.. +.+ | . .-...-.....+++..+|++|+|.... .+-+ ...+...
T Consensus 286 ~TvIt~~~~~-~~~--~-~------------------T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~ 343 (539)
T PLN02995 286 STIITGGRSV-KGG--Y-T------------------TYNSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSI 343 (539)
T ss_pred CeEEEeCCcc-CCC--C-c------------------ccceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCcee
Confidence 0122221000 000 0 0 001123345678899999999986432 2222 3467778
Q ss_pred EEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCC---c--ceeeccCCCCCCCc
Q 040748 356 IESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGH---G--ISIGSLGNHNSRAC 430 (584)
Q Consensus 356 I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~---G--I~IGS~g~~~~~~~ 430 (584)
+.+|+|... .|-+..... .-.+++|+|...=|-| ++ .....++||++..-. | -.|-..+. .....
T Consensus 344 f~~c~~~G~-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTA~~r-~~~~~ 413 (539)
T PLN02995 344 FYKCSIEGY-----QDTLMVHSQ-RQFYRECYIYGTVDFI-FG--NAAAVFQNCIILPRRPLKGQANVITAQGR-ADPFQ 413 (539)
T ss_pred EEcceEecc-----cchhccCCC-ceEEEeeEEeeccceE-ec--ccceEEeccEEEEecCCCCCcceEecCCC-CCCCC
Confidence 888888874 333333332 3578888887665533 33 356778888776421 1 11211110 11233
Q ss_pred EEeEEEEeeEEecCCceE----EEEeecCCC-CeEEeEEEEceEEcCC
Q 040748 431 VSNITVRDSVIKVSNNGV----RIKTWQGGS-GAVSGITFSNIHMNNV 473 (584)
Q Consensus 431 v~nI~I~Nit~~~s~~GI----~Iks~~g~~-G~V~NItf~NI~i~~v 473 (584)
-..+.|.||++....... ..+.+-|+. .....+.|-+..|.+.
T Consensus 414 ~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 414 NTGISIHNSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNV 461 (539)
T ss_pred CceEEEEeeEEecCCcccccccccceeccCCCCCCcceEEEeccccCc
Confidence 467788888887643210 111222221 2244567777777554
No 57
>PLN02197 pectinesterase
Probab=97.14 E-value=0.029 Score=63.95 Aligned_cols=207 Identities=15% Similarity=0.129 Sum_probs=112.1
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-.-||+||+++.... -.+|||.+| +|...=.+-.. |.+++|+++|.= ..
T Consensus 286 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~V~I~~~--k~ni~l~G~g~~-------------------------~T 337 (588)
T PLN02197 286 QFKTISQAVMACPDKNPGRCIIHIKAG-IYNEQVTIPKK--KNNIFMFGDGAR-------------------------KT 337 (588)
T ss_pred CcCCHHHHHHhccccCCceEEEEEeCc-eEEEEEEccCC--CceEEEEEcCCC-------------------------Ce
Confidence 5788999999764432 247999999 89765332111 567777776520 11
Q ss_pred EEecCeE---EeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC----ceeee-eccccE
Q 040748 283 SLQGGGT---IDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ----FHFRF-DNCKNV 354 (584)
Q Consensus 283 tI~G~G~---IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~----~~I~i-~~s~nV 354 (584)
.|++.-. .+|. .. . -..-.....+++..+|++|+|... ..+-+ ...+..
T Consensus 338 iIt~~~~~~~~~g~----~T------------------~-~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~ 394 (588)
T PLN02197 338 VISYNRSVKLSPGT----TT------------------S-LSGTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRA 394 (588)
T ss_pred EEEeccccccCCCC----cc------------------c-ceeEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcE
Confidence 2222100 0110 00 0 112344568889999999999643 12222 346778
Q ss_pred EEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC---Cc--ceeeccCCCCC-C
Q 040748 355 HIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG---HG--ISIGSLGNHNS-R 428 (584)
Q Consensus 355 ~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~~-~ 428 (584)
.+.+|+|... .|-+..... .-.+++|+|...=|-| ++ .....++||.+..- .| -.|-..+. .+ .
T Consensus 395 ~fy~C~f~Gy-----QDTLy~~~~-Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~i~~r~~~~~~~~~iTAqgr-~~~~ 464 (588)
T PLN02197 395 VIFNCRFDGY-----QDTLYVNNG-RQFYRNIVVSGTVDFI-FG--KSATVIQNSLIVVRKGSKGQYNTVTADGN-EKGL 464 (588)
T ss_pred EEEEeEEEec-----CcceEecCC-CEEEEeeEEEeccccc-cc--ceeeeeecCEEEEecCCCCCceeEECCCC-CCCC
Confidence 8888888873 344444333 4578888887665533 33 34578888877531 12 12211111 01 2
Q ss_pred CcEEeEEEEeeEEecCCce----EEEEeecCCC-CeEEeEEEEceEEcC
Q 040748 429 ACVSNITVRDSVIKVSNNG----VRIKTWQGGS-GAVSGITFSNIHMNN 472 (584)
Q Consensus 429 ~~v~nI~I~Nit~~~s~~G----I~Iks~~g~~-G~V~NItf~NI~i~~ 472 (584)
..-..+.|.||++.....- ...+.+-|+. .....+.|-+..|.+
T Consensus 465 ~~~tG~vf~~C~it~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~ 513 (588)
T PLN02197 465 AMKIGIVLQNCRIVPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGD 513 (588)
T ss_pred CCCcEEEEEccEEecCCcccccccccccccCCCCCCCceEEEEecccCC
Confidence 3345788888888764310 1122222221 234566777776654
No 58
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.12 E-value=0.028 Score=62.64 Aligned_cols=148 Identities=11% Similarity=0.023 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-.-||+||+++.... -.+|||.+| +|...=.+-.. |.+++|.++|.= ..
T Consensus 208 ~f~TIq~AI~a~P~~~~~r~vI~Ik~G-vY~E~V~I~~~--k~nItliGdg~~-------------------------~T 259 (509)
T PLN02488 208 KYNTVNAAIAAAPEHSRKRFVIYIKTG-VYDEIVRIGST--KPNLTLIGDGQD-------------------------ST 259 (509)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCC-eeEEEEEecCC--CccEEEEecCCC-------------------------ce
Confidence 6788999999765422 358999999 89865332112 567777777521 01
Q ss_pred EEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-eccccEEE
Q 040748 283 SLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNCKNVHI 356 (584)
Q Consensus 283 tI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s~nV~I 356 (584)
.|+|.- ..+|.. .+ -.+-.....+++..+|++|+|...- .+-+ ..++...+
T Consensus 260 iIt~n~~~~~g~~-T~----------------------~SATv~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~F 316 (509)
T PLN02488 260 IITGNLSASNGKR-TF----------------------YTATVASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVI 316 (509)
T ss_pred EEEEcccccCCCC-ce----------------------eeEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEE
Confidence 222210 001100 00 0123444577888888888886421 2222 23566677
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccC
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCG 412 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~ 412 (584)
.+|+|... .|-+.... ..-.+++|+|...=|-| + |...+.++||.+.
T Consensus 317 y~C~f~Gy-----QDTLy~~~-~RqyyrdC~I~GtVDFI-F--G~a~avFq~C~I~ 363 (509)
T PLN02488 317 YRCRIEGY-----QDALYPHR-DRQFYRECFITGTVDFI-C--GNAAAVFQFCQIV 363 (509)
T ss_pred Ecceeecc-----CcceeeCC-CCEEEEeeEEeeccceE-e--cceEEEEEccEEE
Confidence 77777663 33333222 24566677776555533 2 2356667777665
No 59
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=97.12 E-value=0.027 Score=63.37 Aligned_cols=148 Identities=12% Similarity=0.106 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-.-||+||+++.... -.+|+|.+| +|... +.+... +.+++|+++|.= ..
T Consensus 229 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~-V~I~~~-k~~itl~G~g~~-------------------------~T 280 (530)
T PLN02933 229 NFTTINEAVSAAPNSSETRFIIYIKGG-EYFEN-VELPKK-KTMIMFIGDGIG-------------------------KT 280 (530)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEcCc-eEEEE-EEecCC-CceEEEEEcCCC-------------------------Cc
Confidence 5788999999765432 358999999 89854 333211 567777776531 11
Q ss_pred EEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-eccccEEE
Q 040748 283 SLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNCKNVHI 356 (584)
Q Consensus 283 tI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s~nV~I 356 (584)
.|++.. ..|| |.. .+ ..-.....+++..+||+|+|.... .+-+ ...+.+.+
T Consensus 281 iIt~~~~~~dg-----~~T-----------------~~-SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~f 337 (530)
T PLN02933 281 VIKANRSRIDG-----WST-----------------FQ-TATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAF 337 (530)
T ss_pred EEEeCCccCCC-----Ccc-----------------cc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEE
Confidence 222210 0111 100 01 133455678899999999986421 2222 24566777
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccC
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCG 412 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~ 412 (584)
.+|+|... .|-+..... .-.+++|+|...=|-| ++ .....++||.+.
T Consensus 338 y~C~f~G~-----QDTLy~~~~-Rqyy~~C~IeGtVDFI-FG--~a~avFq~C~i~ 384 (530)
T PLN02933 338 YRCEFDGY-----QDTLYVHSA-KQFYRECDIYGTIDFI-FG--NAAVVFQNCSLY 384 (530)
T ss_pred EEeEEEec-----ccccccCCC-ceEEEeeEEeccccee-cc--CceEEEeccEEE
Confidence 77777763 333333322 3467777776555532 22 245667777664
No 60
>PLN02304 probable pectinesterase
Probab=97.12 E-value=0.039 Score=59.56 Aligned_cols=50 Identities=20% Similarity=0.260 Sum_probs=33.5
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
||.. |-.-||+||+++.+.. -.+|+|.+| +|...=++-.. |.+++|+++|
T Consensus 82 dGsG-df~TIQ~AIdavP~~~~~r~vI~Ik~G-vY~EkV~Ip~~--K~~Itl~G~g 133 (379)
T PLN02304 82 NGCC-NFTTVQSAVDAVGNFSQKRNVIWINSG-IYYEKVTVPKT--KPNITFQGQG 133 (379)
T ss_pred CCCC-CccCHHHHHhhCcccCCCcEEEEEeCe-EeEEEEEECCC--CCcEEEEecC
Confidence 4443 5788999999865422 358999999 89754332112 6778887775
No 61
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.09 E-value=0.037 Score=63.22 Aligned_cols=206 Identities=12% Similarity=0.089 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-.-||+||+++.... -.+|+|.+| +|...=. +... +.+++|+++|.- ..
T Consensus 296 ~f~TIq~Ai~a~P~~~~~r~vI~Ik~G-vY~E~V~-I~~~-k~~i~l~G~g~~-------------------------~T 347 (596)
T PLN02745 296 NFTTISDALAAMPAKYEGRYVIYVKQG-IYDETVT-VDKK-MVNVTMYGDGSQ-------------------------KT 347 (596)
T ss_pred CcccHHHHHHhccccCCceEEEEEeCC-eeEEEEE-EcCC-CceEEEEecCCC-------------------------ce
Confidence 5888999999764422 358999999 8986522 2111 567777776531 01
Q ss_pred EEecCeE-EeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC----ceee-eeccccEEE
Q 040748 283 SLQGGGT-IDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ----FHFR-FDNCKNVHI 356 (584)
Q Consensus 283 tI~G~G~-IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~----~~I~-i~~s~nV~I 356 (584)
.|+|... .+| |. + .+ ..-.....+++..+||+|+|... ..+- ...++...+
T Consensus 348 iIt~~~~~~~g-----~~------------T-----~~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f 404 (596)
T PLN02745 348 IVTGNKNFADG-----VR------------T-----FR-TATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIF 404 (596)
T ss_pred EEEECCcccCC-----Cc------------c-----ee-eEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEE
Confidence 2222100 000 00 0 01 13344578899999999999643 1222 235678889
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC------CcceeeccCCCCCCCc
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG------HGISIGSLGNHNSRAC 430 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g------~GI~IGS~g~~~~~~~ 430 (584)
.+|+|... .|-+.... ..-.+++|+|...=|-| ++ .....++||.+..- .| .|-..+ +.....
T Consensus 405 ~~c~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~-~iTAq~-r~~~~~ 473 (596)
T PLN02745 405 LNCRFEGY-----QDTLYAQT-HRQFYRSCVITGTIDFI-FG--DAAAIFQNCLIFVRKPLPNQQN-TVTAQG-RVDKFE 473 (596)
T ss_pred EeeEEeec-----ccccccCC-CcEEEEeeEEEeeccEE-ec--ceeEEEEecEEEEecCCCCCCc-eEEecC-CCCCCC
Confidence 99999884 33343333 24688889988766633 33 36778888887642 12 111111 012233
Q ss_pred EEeEEEEeeEEecCCceE----EEEeecCCC-CeEEeEEEEceEEcC
Q 040748 431 VSNITVRDSVIKVSNNGV----RIKTWQGGS-GAVSGITFSNIHMNN 472 (584)
Q Consensus 431 v~nI~I~Nit~~~s~~GI----~Iks~~g~~-G~V~NItf~NI~i~~ 472 (584)
-..+.|.||++....... ..+.+-|+. .....+.|.+..|.+
T Consensus 474 ~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~ 520 (596)
T PLN02745 474 TTGIVLQNCRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIED 520 (596)
T ss_pred CceEEEEeeEEecCccccccccccceeccCCCCCCccEEEEecccCC
Confidence 467888899888643211 112222221 224566777777665
No 62
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.09 E-value=0.027 Score=64.95 Aligned_cols=208 Identities=13% Similarity=0.120 Sum_probs=119.3
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|-.-||+||+++-... -.+|+|.+| +|+..=.+-.. +.+++|.++|. ...
T Consensus 261 ~f~TIq~Av~a~P~~~~~r~vI~Ik~G-vY~E~V~I~~~--k~~i~l~Gdg~-------------------------~~T 312 (670)
T PLN02217 261 QYKTINEALNFVPKKKNTTFVVHIKAG-IYKEYVQVNRS--MTHLVFIGDGP-------------------------DKT 312 (670)
T ss_pred CccCHHHHHHhccccCCceEEEEEeCC-ceEEEEEEcCC--CCcEEEEecCC-------------------------CCe
Confidence 6888999999764422 358999999 89775332111 45666666642 111
Q ss_pred EEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCC----ceeee-eccccEEE
Q 040748 283 SLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQ----FHFRF-DNCKNVHI 356 (584)
Q Consensus 283 tI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~----~~I~i-~~s~nV~I 356 (584)
.|+|.- ..||. . + .+ ..-.....+++..+||+|+|... ..+-+ ...+...+
T Consensus 313 iIt~~~~~~dg~-----~------------T-----~~-SAT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~f 369 (670)
T PLN02217 313 VISGSKSYKDGI-----T------------T-----YK-TATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIF 369 (670)
T ss_pred EEEcCCccCCCC-----C------------c-----cc-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEE
Confidence 222210 00110 0 0 01 12344567899999999999743 22222 35788999
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC-----CcceeeccCCCCCCCcE
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG-----HGISIGSLGNHNSRACV 431 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g-----~GI~IGS~g~~~~~~~v 431 (584)
.+|+|... .|-+.... ..-.+++|+|...=|-| ++ .....++||.+..- ..-.|-..+. .....-
T Consensus 370 y~C~f~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~ 439 (670)
T PLN02217 370 YNCKFDGY-----QDTLYAHS-HRQFYRDCTISGTIDFL-FG--DAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRES 439 (670)
T ss_pred Ecceeeec-----cchhccCC-CcEEEEeCEEEEeccEE-ec--CceEEEEccEEEEccCCCCCceeEecCCC-CCCCCC
Confidence 99999984 44444443 34688999998766643 33 36788999998642 1112211111 122345
Q ss_pred EeEEEEeeEEecCCceE----EEEeecCCC-CeEEeEEEEceEEcCC
Q 040748 432 SNITVRDSVIKVSNNGV----RIKTWQGGS-GAVSGITFSNIHMNNV 473 (584)
Q Consensus 432 ~nI~I~Nit~~~s~~GI----~Iks~~g~~-G~V~NItf~NI~i~~v 473 (584)
..+.|.||+|.....-+ ..+.+-|+. .....+.|.+..|.+.
T Consensus 440 tGfvf~~C~i~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 440 TGFVLQGCTIVGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred ceEEEEeeEEecCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 68999999998753211 011222221 2346777888877654
No 63
>PLN02634 probable pectinesterase
Probab=97.07 E-value=0.022 Score=61.06 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
|-..||+||+++.... -.+|+|-+| +|...=.+-.. +.+++|+++|
T Consensus 67 df~TIQaAIda~P~~~~~r~vI~Ik~G-vY~EkV~Ip~~--k~~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSVPKNNTMSVTIKINAG-FYREKVVVPAT--KPYITFQGAG 114 (359)
T ss_pred CccCHHHHHhhCcccCCccEEEEEeCc-eEEEEEEEcCC--CCeEEEEecC
Confidence 5888999999874422 358999999 89765332111 5677777765
No 64
>PLN02314 pectinesterase
Probab=97.06 E-value=0.035 Score=63.40 Aligned_cols=207 Identities=14% Similarity=0.127 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|..-||+||+++.... -.+|||.+| +|...=.+-.. +.+++|.++|.= ..
T Consensus 289 ~f~TI~~Av~a~p~~~~~r~vI~ik~G-~Y~E~V~i~~~--k~~i~l~G~g~~-------------------------~t 340 (586)
T PLN02314 289 DVKTINEAVASIPKKSKSRFVIYVKEG-TYVENVLLDKS--KWNVMIYGDGKD-------------------------KT 340 (586)
T ss_pred CccCHHHHHhhccccCCceEEEEEcCc-eEEEEEEecCC--CceEEEEecCCC-------------------------Cc
Confidence 5777999999764422 358999999 89864322212 567777776521 11
Q ss_pred EEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eee-eeccccEEE
Q 040748 283 SLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFR-FDNCKNVHI 356 (584)
Q Consensus 283 tI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~-i~~s~nV~I 356 (584)
.|+|.. ..||.. .+ + ..-.....+++..+|++|+|...- .+- ....+...+
T Consensus 341 iIt~~~~~~~g~~-t~---------------------~-saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f 397 (586)
T PLN02314 341 IISGSLNFVDGTP-TF---------------------S-TATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVF 397 (586)
T ss_pred EEEecCCcCCCCC-cc---------------------c-eEEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEE
Confidence 222210 011111 01 1 123445678899999999987421 222 235667788
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC---Cc--ceeeccCCCCCCCcE
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG---HG--ISIGSLGNHNSRACV 431 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~~~~~v 431 (584)
.+|+|... .|-+..... .-..+||+|...=|-| ++ ...+.++||.+..- .+ -.|-..+ +.+...-
T Consensus 398 ~~c~~~G~-----QDTLy~~~~-rq~y~~C~I~GtvDFI-FG--~a~avf~~c~i~~~~~~~~~~~~iTA~~-r~~~~~~ 467 (586)
T PLN02314 398 YQCSFDAF-----QDTLYAHSN-RQFYRDCDITGTIDFI-FG--NAAVVFQNCNIQPRQPLPNQFNTITAQG-KKDPNQN 467 (586)
T ss_pred EeeEEEec-----cchheeCCC-CEEEEeeEEEecccee-cc--CceeeeeccEEEEecCCCCCCceEecCC-CCCCCCC
Confidence 88888874 334433332 4577888887665533 32 35677888887631 11 1121111 1122344
Q ss_pred EeEEEEeeEEecCCceEEEEeecCCC-CeEEeEEEEceEEcCC
Q 040748 432 SNITVRDSVIKVSNNGVRIKTWQGGS-GAVSGITFSNIHMNNV 473 (584)
Q Consensus 432 ~nI~I~Nit~~~s~~GI~Iks~~g~~-G~V~NItf~NI~i~~v 473 (584)
..+.|.||++..... +..+.+-|+. .....+.|.+..|.+.
T Consensus 468 ~G~vf~~c~i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 468 TGISIQRCTISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred CEEEEEeeEEecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 577888888876431 1122222221 1234566666666553
No 65
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.05 E-value=0.033 Score=63.03 Aligned_cols=206 Identities=11% Similarity=0.130 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHhhcC-----CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeee
Q 040748 205 DTEAFKMTWDSACQKD-----FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKI 279 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~-----g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~ 279 (584)
|-.-||+||+++.... -.+|||.+| +|...=.+-.. |.+++|.++|.
T Consensus 234 ~f~TI~~Av~a~p~~~~~~~~r~vI~vk~G-~Y~E~V~i~~~--k~~i~l~G~g~------------------------- 285 (538)
T PLN03043 234 NFTTITDAIAAAPNNSKPEDGYFVIYAREG-YYEEYVVVPKN--KKNIMLIGDGI------------------------- 285 (538)
T ss_pred CCcCHHHHHHhccccCCCCcceEEEEEcCe-eeEEEEEeCCC--CCcEEEEecCC-------------------------
Confidence 5788999999764422 148999999 89764332112 56777777752
Q ss_pred eceEEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-ecccc
Q 040748 280 NELSLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNCKN 353 (584)
Q Consensus 280 ~NVtI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s~n 353 (584)
....|+|.- ..|| |.. .+ .+......+++..+|++|+|.... .+-+ ...+.
T Consensus 286 ~~tiIt~~~~~~dg-----~~T-----------------~~-saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~ 342 (538)
T PLN03043 286 NKTIITGNHSVVDG-----WTT-----------------FN-SSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADL 342 (538)
T ss_pred CCeEEEeCCccCCC-----Ccc-----------------cc-ceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCc
Confidence 111233310 1111 111 11 134455678999999999996432 2222 34667
Q ss_pred EEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC------Cc-ceeeccCCCC
Q 040748 354 VHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG------HG-ISIGSLGNHN 426 (584)
Q Consensus 354 V~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g------~G-I~IGS~g~~~ 426 (584)
..+.+|+|... .|-+.... ..-..+||+|...=|-| ++ ...+.++||.+..- .+ |.- .+ +.
T Consensus 343 ~~f~~C~~~gy-----QDTLy~~~-~rq~y~~c~I~GtVDFI-FG--~a~avfq~c~i~~r~~~~~~~~~iTA--~~-r~ 410 (538)
T PLN03043 343 STFYRCSFEGY-----QDTLYVHS-LRQFYRECDIYGTVDFI-FG--NAAAIFQNCNLYARKPMANQKNAFTA--QG-RT 410 (538)
T ss_pred EEEEeeEEecc-----CcccccCC-CcEEEEeeEEeeccceE-ee--cceeeeeccEEEEecCCCCCCceEEe--cC-CC
Confidence 88888888874 33343333 24577888887665633 33 35677888887541 12 221 11 11
Q ss_pred CCCcEEeEEEEeeEEecCCceE----EEEeecCCC-CeEEeEEEEceEEcCC
Q 040748 427 SRACVSNITVRDSVIKVSNNGV----RIKTWQGGS-GAVSGITFSNIHMNNV 473 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~GI----~Iks~~g~~-G~V~NItf~NI~i~~v 473 (584)
....-..+.|.||++.....-. ..+.+-|+. .....+.|.+..|.+.
T Consensus 411 ~~~~~tG~~~~~c~i~~~~~~~~~~~~~~~yLGRpW~~ysr~v~~~s~i~~~ 462 (538)
T PLN03043 411 DPNQNTGISIINCTIEAAPDLAMDPNSTMNFLGRPWKPYSRTVYMQSYIGDL 462 (538)
T ss_pred CCCCCceEEEEecEEecCCcccccccccceeccCCCCCCceEEEEecccCCe
Confidence 2233457788888887542100 111222221 2245666766666543
No 66
>PLN02432 putative pectinesterase
Probab=97.05 E-value=0.039 Score=57.76 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
|-.-||+||+++.... -.+|+|.+| +|...=.+-.. +.+++|..++
T Consensus 22 ~f~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~V~ip~~--k~~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAVPSNNSQLVFIWVKPG-IYREKVVVPAD--KPFITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhccccCCceEEEEEeCc-eeEEEEEEecc--CceEEEEEcC
Confidence 5888999999775433 358999999 89654322111 5666666653
No 67
>PLN02176 putative pectinesterase
Probab=96.98 E-value=0.076 Score=56.73 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
|-.-||+||+++.... -.+|+|.+| +|...=.+-.. |.+++|+++|
T Consensus 50 df~TIq~AIdavP~~~~~~~~I~Ik~G-vY~EkV~Ip~~--k~~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSIPLQNQNWIRILIQNG-IYREKVTIPKE--KGYIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhchhcCCceEEEEECCc-EEEEEEEECCC--CccEEEEEcC
Confidence 5888999999765432 247999999 89865332111 6678777765
No 68
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=96.95 E-value=0.021 Score=59.98 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=27.8
Q ss_pred chHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 204 DDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 204 DdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
-|-..||+||+++.... ..+|+|.+| +|... +.+... +.+++|.++|
T Consensus 10 gdf~TIq~Aida~p~~~~~~~~I~I~~G-~Y~E~-V~i~~~-k~~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAAPDNNTSRYTIFIKPG-TYREK-VTIPRS-KPNVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS-SSSSS-EEEEE-SE-EEE---EEE-ST-STTEEEEES-
T ss_pred CCccCHHHHHHhchhcCCceEEEEEeCe-eEccc-cEeccc-cceEEEEecC
Confidence 36778999999875433 358999999 89755 333211 4667766654
No 69
>PLN02671 pectinesterase
Probab=96.95 E-value=0.071 Score=57.26 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=32.8
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
||.. |-.-||+||+++.... -.+|+|.+| +|...=.+-.. +.+++|+.+|
T Consensus 66 dGsG-df~TIQ~AIdavP~~~~~~~~I~Ik~G-vY~EkV~I~~~--k~~Itl~G~g 117 (359)
T PLN02671 66 NGGG-DSLTVQGAVDMVPDYNSQRVKIYILPG-IYREKVLVPKS--KPYISFIGNE 117 (359)
T ss_pred CCCC-CccCHHHHHHhchhcCCccEEEEEeCc-eEEEEEEECCC--CCeEEEEecC
Confidence 4433 5788999999765432 358999999 89765332111 5677776654
No 70
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=96.93 E-value=0.035 Score=63.18 Aligned_cols=180 Identities=12% Similarity=0.118 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcccccCCcceeEEEeeeece
Q 040748 205 DTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINEL 282 (584)
Q Consensus 205 dT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NV 282 (584)
|..-||+||+++.... -.+|+|.+| +|...=.+-.. +.+++|+++|.- ..
T Consensus 270 ~f~TIq~Av~a~p~~~~~r~vI~Ik~G-vY~E~V~i~~~--k~~i~l~G~g~~-------------------------~T 321 (572)
T PLN02990 270 QYKTINEALNAVPKANQKPFVIYIKQG-VYNEKVDVTKK--MTHVTFIGDGPT-------------------------KT 321 (572)
T ss_pred CCcCHHHHHhhCcccCCceEEEEEeCc-eeEEEEEecCC--CCcEEEEecCCC-------------------------ce
Confidence 5778999999764422 358999999 89865332112 567777777521 11
Q ss_pred EEecCe-EEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCc----eeee-eccccEEE
Q 040748 283 SLQGGG-TIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQF----HFRF-DNCKNVHI 356 (584)
Q Consensus 283 tI~G~G-~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~----~I~i-~~s~nV~I 356 (584)
.|+|.- ..+|. |.. .+ ..-.....+++..+|++|+|.... .+-+ ...+...+
T Consensus 322 iIt~~~~~~~g~----~~T-----------------~~-saT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f 379 (572)
T PLN02990 322 KITGSLNFYIGK----VKT-----------------YL-TATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVF 379 (572)
T ss_pred EEEeccccCCCC----ccc-----------------ee-eeEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEE
Confidence 222210 00000 000 00 123445678899999999986432 2222 24566777
Q ss_pred EeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC---Cc--ceeeccCCCCCCCcE
Q 040748 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG---HG--ISIGSLGNHNSRACV 431 (584)
Q Consensus 357 ~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~~~~~v 431 (584)
.+|+|... .|-+.... ..-.+++|+|...=|-| ++ .....++||.+..- .| -.|-..+. .....-
T Consensus 380 ~~c~~~G~-----QDTLy~~~-~Rqyy~~C~I~GtVDFI-FG--~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~ 449 (572)
T PLN02990 380 YNCQIDGY-----QDTLYVHS-HRQFFRDCTVSGTVDFI-FG--DAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRES 449 (572)
T ss_pred EeeeEecc-----cchhccCC-CcEEEEeeEEecccceE-cc--CceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCC
Confidence 77777763 33333332 23466777777655533 32 34567777777531 11 11211110 012233
Q ss_pred EeEEEEeeEEecC
Q 040748 432 SNITVRDSVIKVS 444 (584)
Q Consensus 432 ~nI~I~Nit~~~s 444 (584)
..+.|.||++...
T Consensus 450 ~G~vf~~C~it~~ 462 (572)
T PLN02990 450 TGLVLQNCHITGE 462 (572)
T ss_pred ceEEEEeeEEecC
Confidence 4677777777654
No 71
>PLN02497 probable pectinesterase
Probab=96.92 E-value=0.055 Score=57.57 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=32.9
Q ss_pred CCCcchHHHHHHHHHHHhhcC--CcEEEEcCCeEEEeeeeeeecccCCceEEeeee
Q 040748 200 DGISDDTEAFKMTWDSACQKD--FAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDG 253 (584)
Q Consensus 200 dg~tDdT~Aiq~Ai~~a~~~~--g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~G 253 (584)
||.. |-..||+||+++.... -.+|+|-+| +|+..=.+-.. |.+++|+++|
T Consensus 39 dGsG-df~TIq~AIdavP~~~~~~~~I~Ik~G-~Y~EkV~Ip~~--k~~itl~G~g 90 (331)
T PLN02497 39 SGHG-NFTTIQSAIDSVPSNNKHWFCINVKAG-LYREKVKIPYD--KPFIVLVGAG 90 (331)
T ss_pred CCCC-CccCHHHHHhhccccCCceEEEEEeCc-EEEEEEEecCC--CCcEEEEecC
Confidence 4443 5788999999765432 247999999 89765332111 5677777664
No 72
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=96.88 E-value=0.001 Score=52.85 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=23.7
Q ss_pred ccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeeeee
Q 040748 197 AVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTI 238 (584)
Q Consensus 197 A~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~~~ 238 (584)
|+|||+||||+||.+++++. ..|..| =-.|.||+++.+-
T Consensus 1 A~GDGvtdDt~A~~a~l~a~--~~g~~I-Dg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS--PVGRKI-DGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS---TTS-E-E-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc--CCCeEE-ecCCceEEEeeCc
Confidence 79999999999999999853 234444 4478899998774
No 73
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=96.74 E-value=0.022 Score=56.40 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=79.5
Q ss_pred EeecCceEeeeeEecC---------------CCceeeeeccccEEEEeEEEECCCCC---CCCCc-eeec-CcccEEEEc
Q 040748 326 FMSSNLTVQRLRIKDS---------------PQFHFRFDNCKNVHIESIHITAPALS---PNTDG-IHIE-NTNGVEIYN 385 (584)
Q Consensus 326 ~~s~nvtI~gvti~ns---------------~~~~I~i~~s~nV~I~nv~I~~~~~~---~ntDG-I~i~-~S~nV~I~n 385 (584)
.+++||.|++|+|++. ....|.+..+++|-|++|++...... ...|| +++. .+++|+|.+
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 5899999999999982 34468999999999999999986211 11455 5665 689999999
Q ss_pred eEEecCCCcEEeCC-------CceeEEEEecccCCCCc-c-eeeccCCCCCCCcEEeEEEEeeEEec-CCceEEEEeecC
Q 040748 386 SVISNGDDCVSIGS-------GCYDVDIRNITCGPGHG-I-SIGSLGNHNSRACVSNITVRDSVIKV-SNNGVRIKTWQG 455 (584)
Q Consensus 386 ~~i~~gDDgIai~s-------gs~NV~I~Nc~~~~g~G-I-~IGS~g~~~~~~~v~nI~I~Nit~~~-s~~GI~Iks~~g 455 (584)
|.|...+.+..++. ...+|++.+|.+.+..+ . .+ +. -.+.+-|+.+.+ ..+++.... +
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~-------r~---G~~Hv~NN~~~~~~~y~i~~~~--~ 190 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV-------RF---GYVHVYNNYYYNWSGYAIGARS--G 190 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE-------CS---CEEEEES-EEEEECSESEEEET--T
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc-------cc---cEEEEEEeeeECCCCEEEEccC--C
Confidence 99986444333333 13699999999875321 1 11 01 146788887765 445665543 1
Q ss_pred CCCeEEeEEEEceEE
Q 040748 456 GSGAVSGITFSNIHM 470 (584)
Q Consensus 456 ~~G~V~NItf~NI~i 470 (584)
..|.+|++.|
T Consensus 191 -----a~v~~E~N~F 200 (200)
T PF00544_consen 191 -----AQVLVENNYF 200 (200)
T ss_dssp -----EEEEEES-EE
T ss_pred -----eEEEEECcCC
Confidence 2567776654
No 74
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.60 E-value=0.19 Score=54.31 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=32.6
Q ss_pred ceEEEecccccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeeeeeeecccCCceEEeeeee
Q 040748 188 NVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGT 254 (584)
Q Consensus 188 ~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~Gt 254 (584)
.+-.|+.|=...+ || +..||+. ...|++.+|.+|.+++.+.. ++-..|.+.|.
T Consensus 42 ~FEqvkt~~~~P~---eD---le~~I~~-----haKVaL~Pg~~Y~i~~~V~I---~~~cYIiGnGA 94 (386)
T PF01696_consen 42 SFEQVKTYWMEPG---ED---LEEAIRQ-----HAKVALRPGAVYVIRKPVNI---RSCCYIIGNGA 94 (386)
T ss_pred eeEeEEEEEcCCC---cC---HHHHHHh-----cCEEEeCCCCEEEEeeeEEe---cceEEEECCCE
Confidence 4556677776665 33 3334442 34677778889999754432 56677777764
No 75
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.14 Score=53.77 Aligned_cols=45 Identities=16% Similarity=0.080 Sum_probs=30.1
Q ss_pred chHHHHHHHHHHHhhcC---CcEEEEcCCeEEEeeeeeeecccCCc--eEEeeee
Q 040748 204 DDTEAFKMTWDSACQKD---FAVIHVPYGFSFMIQSTIFTGPCQGS--IVFQVDG 253 (584)
Q Consensus 204 DdT~Aiq~Ai~~a~~~~---g~~v~~p~G~tY~i~~~~ltgp~ksn--vtL~l~G 253 (584)
++-..||+|+|+|..+. -.+|.+-+| .|.-+--+- ++. ++|++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~G-vY~e~v~Vp----~~~~~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAG-VYQETVYVP----AAPGGITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccc-eeceeEEec----CCCCceeEEecC
Confidence 57888999999876543 358889999 786542221 333 6666653
No 76
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.11 Score=54.68 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=21.7
Q ss_pred ceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCC--Cccee
Q 040748 372 GIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG--HGISI 419 (584)
Q Consensus 372 GI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g--~GI~I 419 (584)
|.|...+++..|+++..+...-|+++-- +++++|.|+.-.+. |||-+
T Consensus 196 gvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS~Gnrd~Gill 244 (408)
T COG3420 196 GVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNRSSGNRDHGILL 244 (408)
T ss_pred eEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCcccCccccceee
Confidence 3444444444444444443333444321 45666666655442 55443
No 77
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=95.61 E-value=0.48 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=15.0
Q ss_pred hhcCCcEEEEcCCeEEEeeee
Q 040748 217 CQKDFAVIHVPYGFSFMIQST 237 (584)
Q Consensus 217 ~~~~g~~v~~p~G~tY~i~~~ 237 (584)
|..-..-|++|+|+|.++...
T Consensus 67 cenint~ifip~gktl~v~g~ 87 (464)
T PRK10123 67 CDNINTGIFIPPGKTLHILGS 87 (464)
T ss_pred ecccccceEeCCCCeEEEEEE
Confidence 443356799999998877544
No 78
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.70 E-value=1 Score=45.19 Aligned_cols=127 Identities=13% Similarity=0.156 Sum_probs=74.4
Q ss_pred cEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEe-cCCCcEEeCCCceeEEEEecccCCCCc--ceeeccCCCCCCC
Q 040748 353 NVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVIS-NGDDCVSIGSGCYDVDIRNITCGPGHG--ISIGSLGNHNSRA 429 (584)
Q Consensus 353 nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~-~gDDgIai~sgs~NV~I~Nc~~~~g~G--I~IGS~g~~~~~~ 429 (584)
..+++|+.|-. ...||||..+ +.+|+|++.. .+.|++.++.....++|.+.-..++.. |..-.
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng-------- 127 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG-------- 127 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S--------
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecC--------
Confidence 56677777744 3568999887 7899999987 489999998866577887776655433 44311
Q ss_pred cEEeEEEEeeEEecCCceEEEEeecC--C-CCeEEeEEEEceEEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEEEe
Q 040748 430 CVSNITVRDSVIKVSNNGVRIKTWQG--G-SGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSN 505 (584)
Q Consensus 430 ~v~nI~I~Nit~~~s~~GI~Iks~~g--~-~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~N 505 (584)
--.+.|+|.++.+ .|-.+.++-. . .+.-|+|.+++........-+-|...|+ ....|++++++.
T Consensus 128 -~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g---------D~ati~~~~~~~ 194 (215)
T PF03211_consen 128 -GGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG---------DTATISNSCIKG 194 (215)
T ss_dssp -SEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT---------TTEEEEEEEEEE
T ss_pred -ceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC---------CeEEEEEEEecC
Confidence 1257777765554 3444445311 1 1344667777665543232334554443 346777777665
No 79
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=91.29 E-value=1.5 Score=48.25 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=51.4
Q ss_pred ecCceEeeeeEecC--CC-----ceeee--eccccEEEEeEEEECCCCCCCCCce--ee----cCcccEEEEceEEecC-
Q 040748 328 SSNLTVQRLRIKDS--PQ-----FHFRF--DNCKNVHIESIHITAPALSPNTDGI--HI----ENTNGVEIYNSVISNG- 391 (584)
Q Consensus 328 s~nvtI~gvti~ns--~~-----~~I~i--~~s~nV~I~nv~I~~~~~~~ntDGI--~i----~~S~nV~I~n~~i~~g- 391 (584)
.+.++|+|++|++. +. +.... ..+.+.++.++.|..-.. +..+.- .+ ...++-+|++|.|...
T Consensus 66 G~yl~v~GL~F~ng~~~~~~vi~fr~~~~~~~a~~~RlT~~vi~~fn~-~~~~~~~~wv~~~~l~G~~NrvDhn~F~gK~ 144 (425)
T PF14592_consen 66 GSYLVVSGLKFKNGYTPTGAVISFRNGGDASYANHCRLTNCVIDDFNN-PDREESDNWVTIYSLYGKHNRVDHNYFQGKT 144 (425)
T ss_dssp SSSEEEES-EEEEE---TTT--TTS--SEEE-SSS-EEES-EEES--S-S-S-SEEE---TT-----S-EEES-EEE---
T ss_pred eeeEEEeCeEEecCCCCCCceEEeecCCCcceecceEEEeEEeeccCC-cccccCceEEEEEEeeccCceEEccEeeccc
Confidence 46788888888763 11 11212 247788888888886321 122221 12 2466788999988752
Q ss_pred --CCcEEeC--C-----CceeEEEEecccCC-----CC---cceeeccCCCCCCCcEEeEEEEeeEEecCCc---eEEEE
Q 040748 392 --DDCVSIG--S-----GCYDVDIRNITCGP-----GH---GISIGSLGNHNSRACVSNITVRDSVIKVSNN---GVRIK 451 (584)
Q Consensus 392 --DDgIai~--s-----gs~NV~I~Nc~~~~-----g~---GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~---GI~Ik 451 (584)
.--|.+. - -..+-+|.+|+|.. +. .|.||... ....-.+.+|+++.|.++.. -|.+|
T Consensus 145 ~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~---~S~~~s~t~Ve~NlFe~cdGE~EIISvK 221 (425)
T PF14592_consen 145 NRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSH---SSMSDSNTTVENNLFERCDGEVEIISVK 221 (425)
T ss_dssp SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SST---T-B-----EEES-EEEEE-SSSEEEEEE
T ss_pred cCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEeccc---ccccccceeeecchhhhcCCceeEEEee
Confidence 2234433 1 12355788888873 22 28887653 23444678888888887653 35555
Q ss_pred e
Q 040748 452 T 452 (584)
Q Consensus 452 s 452 (584)
+
T Consensus 222 S 222 (425)
T PF14592_consen 222 S 222 (425)
T ss_dssp S
T ss_pred c
Confidence 5
No 80
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=90.86 E-value=1.6 Score=42.61 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=8.8
Q ss_pred ecceecCCccccCCccccCc
Q 040748 551 WNAYGDLPTLTIPPVSCLLE 570 (584)
Q Consensus 551 ~nv~G~~~~~t~~~~~~~~~ 570 (584)
|+...|+.-...+| |+-.
T Consensus 180 Wng~~Wv~d~vssp--ciDa 197 (198)
T PF08480_consen 180 WNGKTWVKDNVSSP--CIDA 197 (198)
T ss_pred CcCCeeeecCccCc--cccC
Confidence 55555554444444 5543
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.85 E-value=0.24 Score=36.53 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=18.0
Q ss_pred ceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEeccc
Q 040748 372 GIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITC 411 (584)
Q Consensus 372 GI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~ 411 (584)
||.++.+.+.+|+++.+....+||.+.. +.+-+|+++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 3444544555555555554444555433 23333444433
No 82
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=90.42 E-value=0.45 Score=35.06 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=31.0
Q ss_pred eeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEec
Q 040748 345 HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISN 390 (584)
Q Consensus 345 ~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~ 390 (584)
+|.+..+.+.+|++.+|.. +.|||++..+.+.+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 3566777777788888876 5568888888888888887764
No 83
>PLN02480 Probable pectinesterase
Probab=89.78 E-value=4.5 Score=43.51 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=73.9
Q ss_pred ccccEEEEeEEEECCCCC-----CCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccC
Q 040748 350 NCKNVHIESIHITAPALS-----PNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLG 423 (584)
Q Consensus 350 ~s~nV~I~nv~I~~~~~~-----~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g 423 (584)
..++++++|++|.+.... ....++-+. .++.+.++||.|....|-+.... ..-.++||+|.+.-.+=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 456899999999997321 123456553 67899999999999888776543 56789999998776655543
Q ss_pred CCCCCCcEEeEEEEeeEEecCC------ceEEEEeecCCCCeEEeEEEEceEEcCC
Q 040748 424 NHNSRACVSNITVRDSVIKVSN------NGVRIKTWQGGSGAVSGITFSNIHMNNV 473 (584)
Q Consensus 424 ~~~~~~~v~nI~I~Nit~~~s~------~GI~Iks~~g~~G~V~NItf~NI~i~~v 473 (584)
-...|+||++.... .|. |-.+......-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~-ITA~~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGS-ITAHNRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceE-EEcCCCCCCCCCEEEEECCEEccc
Confidence 26689999998542 122 322211112234578999999764
No 84
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.60 E-value=1.9 Score=50.07 Aligned_cols=19 Identities=37% Similarity=0.665 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 040748 91 TAASSPSPEPSNPPSGYNA 109 (584)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~ 109 (584)
+.-.+++|.|..||..+.|
T Consensus 536 ~gG~g~pppPppPPlpgga 554 (1102)
T KOG1924|consen 536 TGGTGPPPPPPPPPLPGGA 554 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCC
Confidence 3444555555555554433
No 85
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=88.19 E-value=10 Score=38.21 Aligned_cols=136 Identities=18% Similarity=0.198 Sum_probs=85.9
Q ss_pred EEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcc-cEEEEceEEecCCCcEEeCCCcee
Q 040748 325 FFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTN-GVEIYNSVISNGDDCVSIGSGCYD 403 (584)
Q Consensus 325 f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~-nV~I~n~~i~~gDDgIai~sgs~N 403 (584)
|.--...+|+++.|-....-+||..+ +.+|+||.+.. --.|++.+.+.. .++|.+.-.++.+|-|.=..+...
T Consensus 57 F~le~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwed----VcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng~Gt 130 (215)
T PF03211_consen 57 FILEDGATLKNVIIGANQADGIHCKG--SCTLENVWWED----VCEDAATFKGDGGTVTIIGGGARNASDKVFQHNGGGT 130 (215)
T ss_dssp EEEETTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-SSEE
T ss_pred EEecCCCEEEEEEEcCCCcCceEEcC--CEEEEEEEecc----cceeeeEEcCCCceEEEeCCcccCCCccEEEecCcee
Confidence 33457789999999777778999998 88999999987 467889888766 889999988888876655555667
Q ss_pred EEEEecccCCCCcceeeccCCCCCC-CcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEc
Q 040748 404 VDIRNITCGPGHGISIGSLGNHNSR-ACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSN 467 (584)
Q Consensus 404 V~I~Nc~~~~g~GI~IGS~g~~~~~-~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~N 467 (584)
++|+|-+.. ..|--+=|-|.-... +.-+.|.|++........-+.|-...+....|+++.+..
T Consensus 131 v~I~nF~a~-d~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD~ati~~~~~~~ 194 (215)
T PF03211_consen 131 VTIKNFYAE-DFGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGDTATISNSCIKG 194 (215)
T ss_dssp EEEEEEEEE-EEEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTTTEEEEEEEEEE
T ss_pred EEEEeEEEc-CCCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCCeEEEEEEEecC
Confidence 888885443 122111111111111 244567777665544332345556667766777776665
No 86
>PLN02665 pectinesterase family protein
Probab=87.77 E-value=9.4 Score=41.45 Aligned_cols=116 Identities=14% Similarity=0.146 Sum_probs=75.7
Q ss_pred eeeccccEEEEeEEEECCCCC-----CCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceee
Q 040748 347 RFDNCKNVHIESIHITAPALS-----PNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIG 420 (584)
Q Consensus 347 ~i~~s~nV~I~nv~I~~~~~~-----~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IG 420 (584)
....++++..+|++|.+.... .....+-+. ..+.+.+.||.|....|-+.... .+-.++||++.+.-.+=+|
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceecc
Confidence 345678999999999996421 111233332 46789999999999888776544 4678999999987665554
Q ss_pred ccCCCCCCCcEEeEEEEeeEEecCCce-EEEEeecCCC--CeEEeEEEEceEEcCCc
Q 040748 421 SLGNHNSRACVSNITVRDSVIKVSNNG-VRIKTWQGGS--GAVSGITFSNIHMNNVR 474 (584)
Q Consensus 421 S~g~~~~~~~v~nI~I~Nit~~~s~~G-I~Iks~~g~~--G~V~NItf~NI~i~~v~ 474 (584)
. -...|++|++.....+ ...-+-+++. ..-....|.|+++....
T Consensus 227 ~----------g~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 227 S----------GKSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred c----------cceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 4 2457889998854433 1222222211 12245679999998754
No 87
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=87.53 E-value=12 Score=41.16 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=38.0
Q ss_pred EeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeec
Q 040748 432 SNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYD 511 (584)
Q Consensus 432 ~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~ 511 (584)
.|=.|+|+..+++. |+.+. |+|.+++|+||+.+++. +.++++..+ +=+|.||+.-..
T Consensus 311 tnHiidNi~~~~~l-GVG~~-~DG~~~yvsni~~~d~~----g~G~~~~~~-----------------~~~ftNitvId~ 367 (549)
T PF09251_consen 311 TNHIIDNILVRGSL-GVGIG-MDGKGGYVSNITVQDCA----GAGIFIRGT-----------------NKVFTNITVIDT 367 (549)
T ss_dssp ---EEEEEEEES-S-SESCE-EECCS-EEEEEEEES-S----SESEEEECC-----------------S-EEEEEEEES-
T ss_pred hhhhhhhhheeccc-eeeee-ecCCCceEeeEEeeccc----CCceEEeec-----------------CCceeeeEEEec
Confidence 45567777776653 44332 35666777777776644 334555432 334555553322
Q ss_pred C--CCCCeEEecCCCCceecEEEEeEEEEcCCC
Q 040748 512 I--RSPPMHFACSDTVPCTNLTLSEVELLPAKG 542 (584)
Q Consensus 512 ~--~~~~i~i~~~~~~~~~nItf~NI~i~~~~g 542 (584)
. .-..-.+.|.....+.+|++-+|+-+...|
T Consensus 368 N~~n~~~nQI~i~G~~~vnGir~igi~~~~~~G 400 (549)
T PF09251_consen 368 NTDNFNANQIYIEGACIVNGIRLIGIKPTPSQG 400 (549)
T ss_dssp STT-SSSECEEE-SS-EEEEEEE-ECC-STSSS
T ss_pred cccCCCCceEEEecceEEcceeEeeeeccCCCc
Confidence 1 101112223333346666666666555555
No 88
>PLN02682 pectinesterase family protein
Probab=87.17 E-value=7.7 Score=42.14 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=14.9
Q ss_pred eEEEEeecCceEeeeeEecCC
Q 040748 322 ALRFFMSSNLTVQRLRIKDSP 342 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns~ 342 (584)
.-.....+++..+||+|+|..
T Consensus 156 AT~~v~a~~F~a~nlTf~Nt~ 176 (369)
T PLN02682 156 ATFAVNSPYFIAKNITFKNTA 176 (369)
T ss_pred eEEEEECCCeEEEeeEEEccc
Confidence 344556778888888888853
No 89
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=87.03 E-value=7.1 Score=44.28 Aligned_cols=116 Identities=13% Similarity=0.120 Sum_probs=78.2
Q ss_pred eeeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCC
Q 040748 346 FRFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGN 424 (584)
Q Consensus 346 I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~ 424 (584)
......+++..+|++|.+.........+-+. .+..+.+.+|.|....|-+.... .+-.+++|++.+.-.+=+|.
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~--- 381 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN--- 381 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc---
Confidence 3445667899999999997543333444443 46789999999999888877655 45688999999877765543
Q ss_pred CCCCCcEEeEEEEeeEEecCCc---eEEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 425 HNSRACVSNITVRDSVIKVSNN---GVRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 425 ~~~~~~v~nI~I~Nit~~~s~~---GI~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
-...|+||++.-... .-.| +.+++ ...-..+.|.|+++....
T Consensus 382 -------a~avFq~C~I~~~~~~~~~g~I-TAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 382 -------SAVVFQSCNIAARKPSGDRNYV-TAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred -------ceEEEeccEEEEecCCCCceEE-EecCCCCCCCCceEEEEeeEEecCC
Confidence 257899999875321 1223 22222 122356789999998743
No 90
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=86.73 E-value=3.1 Score=42.63 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=52.1
Q ss_pred cEEeCCCceeEEEEecccCCC--CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEc
Q 040748 394 CVSIGSGCYDVDIRNITCGPG--HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMN 471 (584)
Q Consensus 394 gIai~sgs~NV~I~Nc~~~~g--~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~ 471 (584)
+|.+.+ .+.+|+||+|.+. .||.+-... ....+.+++|+++.+.....||.+...... +.| .++|+.|+
T Consensus 116 Gi~Ies--s~~tI~Nntf~~~~~~GI~v~g~~---~~~~i~~~vI~GN~~~~~~~Gi~i~~~~~~---~~n-~I~NN~I~ 186 (246)
T PF07602_consen 116 GIWIES--SSPTIANNTFTNNGREGIFVTGTS---ANPGINGNVISGNSIYFNKTGISISDNAAP---VEN-KIENNIIE 186 (246)
T ss_pred EEEEec--CCcEEEeeEEECCccccEEEEeee---cCCcccceEeecceEEecCcCeEEEcccCC---ccc-eeeccEEE
Confidence 455544 3778888888773 677662221 135678899999999988889988654332 333 44777777
Q ss_pred CCcccEEEEE
Q 040748 472 NVRNPIIIDQ 481 (584)
Q Consensus 472 ~v~~~I~I~~ 481 (584)
+...+|.+..
T Consensus 187 ~N~~Gi~~~~ 196 (246)
T PF07602_consen 187 NNNIGIVAIG 196 (246)
T ss_pred eCCcCeEeec
Confidence 6566776553
No 91
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=86.56 E-value=5 Score=46.85 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=5.2
Q ss_pred CCCCCCCCCCCCC
Q 040748 95 SPSPEPSNPPSGY 107 (584)
Q Consensus 95 ~~~~~~~~~~~~~ 107 (584)
+.+|.|+-||.|+
T Consensus 526 ~iP~PP~~pp~gG 538 (1102)
T KOG1924|consen 526 GIPPPPPLPPTGG 538 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 3344444444333
No 92
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=85.75 E-value=5.6 Score=46.37 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=77.0
Q ss_pred eccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCCC
Q 040748 349 DNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNS 427 (584)
Q Consensus 349 ~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~~ 427 (584)
...+++..+|++|.+.........+-+. .+....++||.|....|-+.... .+-.+++|+|.+.-.+=+|.
T Consensus 334 v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 405 (670)
T PLN02217 334 IVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGD------ 405 (670)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecC------
Confidence 4567899999999997543344455554 57789999999999888776654 46689999999776655543
Q ss_pred CCcEEeEEEEeeEEecCC----ceEEEEeecCCC--CeEEeEEEEceEEcCC
Q 040748 428 RACVSNITVRDSVIKVSN----NGVRIKTWQGGS--GAVSGITFSNIHMNNV 473 (584)
Q Consensus 428 ~~~v~nI~I~Nit~~~s~----~GI~Iks~~g~~--G~V~NItf~NI~i~~v 473 (584)
...+|+||++.-.. ..-.| +.+++. ..-..+.|.|++|...
T Consensus 406 ----a~avfq~C~I~~r~~~~~~~~~I-TAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 406 ----AAAVFQNCTLLVRKPLLNQACPI-TAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ----ceEEEEccEEEEccCCCCCceeE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 25689999997432 11223 223321 2345688999999874
No 93
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=85.02 E-value=22 Score=38.78 Aligned_cols=106 Identities=11% Similarity=0.047 Sum_probs=62.5
Q ss_pred eecCceEeeeeEecCC-CceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEE
Q 040748 327 MSSNLTVQRLRIKDSP-QFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVD 405 (584)
Q Consensus 327 ~s~nvtI~gvti~ns~-~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~ 405 (584)
+-.+|++.|+.+.... .-++-+....++++.+|.+.+- +...+.++ ....|++|.|....-||.- .+...+.
T Consensus 119 gM~~VtF~ni~F~~~~~~~g~~f~~~t~~~~hgC~F~gf----~g~cl~~~--~~~~VrGC~F~~C~~gi~~-~~~~~ls 191 (386)
T PF01696_consen 119 GMEGVTFVNIRFEGRDTFSGVVFHANTNTLFHGCSFFGF----HGTCLESW--AGGEVRGCTFYGCWKGIVS-RGKSKLS 191 (386)
T ss_pred eeeeeEEEEEEEecCCccceeEEEecceEEEEeeEEecC----cceeEEEc--CCcEEeeeEEEEEEEEeec-CCcceEE
Confidence 3456777777776665 5556666777777777777763 33334433 3667777777665545532 2345667
Q ss_pred EEecccCCC-CcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEE
Q 040748 406 IRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRI 450 (584)
Q Consensus 406 I~Nc~~~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~I 450 (584)
|++|+|... -||.. +| +..|++|.+.++.-.+.+
T Consensus 192 Vk~C~FekC~igi~s--~G---------~~~i~hn~~~ec~Cf~l~ 226 (386)
T PF01696_consen 192 VKKCVFEKCVIGIVS--EG---------PARIRHNCASECGCFVLM 226 (386)
T ss_pred eeheeeeheEEEEEe--cC---------CeEEecceecccceEEEE
Confidence 777777654 34422 22 345667777666544444
No 94
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=84.79 E-value=8 Score=44.18 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=77.1
Q ss_pred eeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748 347 RFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH 425 (584)
Q Consensus 347 ~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~ 425 (584)
.....+++..+|++|.+.........+-+. .+..+.+++|.|....|-+..++ ..-.++||++.+.-.+=+|.
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~---- 391 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGN---- 391 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceeccc----
Confidence 344567899999999987543333445443 46789999999999888877665 45689999999877765554
Q ss_pred CCCCcEEeEEEEeeEEecCCc--e--EEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 426 NSRACVSNITVRDSVIKVSNN--G--VRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 426 ~~~~~v~nI~I~Nit~~~s~~--G--I~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
-...|+||++.-... + -.| +.+++ ...-..+.|.|+++...
T Consensus 392 ------a~avfq~c~i~~~~~~~~~~~~i-TAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 ------AAVVFQNCKIVARKPMAGQKNMV-TAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred ------ceeEEeccEEEEecCCCCCCceE-EecCCCCCCCCCEEEEEeeEEecC
Confidence 266889999875321 0 122 22222 12345688999999764
No 95
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=84.69 E-value=14 Score=40.76 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=15.2
Q ss_pred eEEEEeecCceEeeeeEecCC
Q 040748 322 ALRFFMSSNLTVQRLRIKDSP 342 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns~ 342 (584)
...+...+++..+||+|+|..
T Consensus 199 ATv~v~ad~F~a~NLTf~Nta 219 (422)
T PRK10531 199 AVFWSQNNGLQLQNLTIENTL 219 (422)
T ss_pred EEEEEECCCEEEEeeEEEeCC
Confidence 345567788888888888864
No 96
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=84.43 E-value=8.4 Score=44.20 Aligned_cols=114 Identities=13% Similarity=0.075 Sum_probs=77.3
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+..+.+.+|.|....|-+..++ ..-.++||++.+.-.+=+|.
T Consensus 341 ~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~----- 413 (565)
T PLN02468 341 AVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN----- 413 (565)
T ss_pred eEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc-----
Confidence 34567899999999987543333445443 57789999999999888777665 45679999999877765654
Q ss_pred CCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
-.+.|+||++.-... .-.| +.+++ ...-..+.|.|++|....
T Consensus 414 -----a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 414 -----SAVVFQNCNILPRRPMKGQQNTI-TAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred -----ceEEEeccEEEEecCCCCCCceE-EecCCCCCCCCceEEEEccEEecCC
Confidence 367899999974311 1122 22222 123456889999998643
No 97
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=84.34 E-value=7.7 Score=44.25 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=76.6
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+..+.+.+|.|....|-+..++ ..-.+++|+|.+.-.+=+|.
T Consensus 313 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 385 (541)
T PLN02416 313 AVSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN----- 385 (541)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc-----
Confidence 34568999999999997654344455543 56789999999999888776654 46689999999876665554
Q ss_pred CCCcEEeEEEEeeEEecCCc--e-EEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 427 SRACVSNITVRDSVIKVSNN--G-VRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~--G-I~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
-...|+||++.-... | ...-+.+++ ...-..+.|.|++|...
T Consensus 386 -----a~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 -----AAVVFQACNIVSKMPMPGQFTVITAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred -----ceEEEeccEEEEecCCCCCceEEECCCCCCCCCCCEEEEEeeEEecC
Confidence 266889999875321 1 111122222 12235678999999754
No 98
>PLN02197 pectinesterase
Probab=84.00 E-value=10 Score=43.77 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=77.8
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+++|.|....|-+...+ ..-.++||++.+.-.+=+|.
T Consensus 360 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 432 (588)
T PLN02197 360 QVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGK----- 432 (588)
T ss_pred EEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccc-----
Confidence 44567899999999997543334455554 56789999999999989887765 45689999999876655543
Q ss_pred CCCcEEeEEEEeeEEecCC--ce--EEEEeecCCC---CeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSN--NG--VRIKTWQGGS---GAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~--~G--I~Iks~~g~~---G~V~NItf~NI~i~~v~ 474 (584)
....|+||++.-.. .| -.| +.+++. ..-..+.|.|++|....
T Consensus 433 -----a~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 433 -----SATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -----eeeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecCC
Confidence 24789999987421 11 122 323321 23356889999998643
No 99
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=83.90 E-value=9 Score=43.27 Aligned_cols=140 Identities=9% Similarity=0.017 Sum_probs=74.1
Q ss_pred EEEeecCceEeeeeEecCCCc----eeee-eccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeC
Q 040748 324 RFFMSSNLTVQRLRIKDSPQF----HFRF-DNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIG 398 (584)
Q Consensus 324 ~f~~s~nvtI~gvti~ns~~~----~I~i-~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~ 398 (584)
.....+++..+||+|+|.... .+-+ ...+.+.+.+|+|... .|-+..... .-.+++|+|...=|-| ++
T Consensus 265 ~~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~-----QDTLy~~~~-rqyy~~C~I~G~vDFI-FG 337 (497)
T PLN02698 265 FTITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGY-----QDTLYAAAL-RQFYRECDIYGTIDFI-FG 337 (497)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecc-----cchheeCCC-cEEEEeeEEEeccceE-ec
Confidence 445678999999999997532 2221 2467777888888773 333443333 3477788887655533 33
Q ss_pred CCceeEEEEecccCCC---Cc--ceeeccCCCCCCCcEEeEEEEeeEEecCCceEE----EEeecCCC-CeEEeEEEEce
Q 040748 399 SGCYDVDIRNITCGPG---HG--ISIGSLGNHNSRACVSNITVRDSVIKVSNNGVR----IKTWQGGS-GAVSGITFSNI 468 (584)
Q Consensus 399 sgs~NV~I~Nc~~~~g---~G--I~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~----Iks~~g~~-G~V~NItf~NI 468 (584)
.....++||++..- .+ -.|-..+. .....-..+.|.||++........ ++.+-|+. .....+.|.+.
T Consensus 338 --~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s 414 (497)
T PLN02698 338 --NAAAVFQNCYLFLRRPHGKSYNVILANGR-SDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMES 414 (497)
T ss_pred --ccceeecccEEEEecCCCCCceEEEecCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEec
Confidence 34567788877531 11 11111111 112234567788888775432111 11222221 22345666666
Q ss_pred EEcCC
Q 040748 469 HMNNV 473 (584)
Q Consensus 469 ~i~~v 473 (584)
.|...
T Consensus 415 ~l~~~ 419 (497)
T PLN02698 415 YIDDA 419 (497)
T ss_pred ccCCc
Confidence 66543
No 100
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=83.86 E-value=10 Score=43.83 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=76.2
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+.... .+-.++||++.+.-.+=+|.
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 440 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD----- 440 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc-----
Confidence 34668899999999986532233444443 46789999999999888776654 45789999999876665544
Q ss_pred CCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
-...|+||++.-... .-.| +.+++ ...-..+.|.|++|....
T Consensus 441 -----a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 441 -----AAAIFQNCLIFVRKPLPNQQNTV-TAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred -----eeEEEEecEEEEecCCCCCCceE-EecCCCCCCCCceEEEEeeEEecCc
Confidence 367899999874311 1122 22222 122356889999998643
No 101
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=83.48 E-value=12 Score=42.74 Aligned_cols=114 Identities=11% Similarity=0.085 Sum_probs=77.2
Q ss_pred eeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748 347 RFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH 425 (584)
Q Consensus 347 ~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~ 425 (584)
.....+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.++||+|.+.-.+=+|.
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~---- 381 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN---- 381 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec----
Confidence 344568899999999997543344455554 46779999999999888777665 45689999999877765654
Q ss_pred CCCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 426 NSRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 426 ~~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
-...|+||++.-... .-.|- .+++ ...-..+.|.|++|...
T Consensus 382 ------a~avfq~c~i~~r~~~~~~~~~iT-A~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 ------AAAIFQNCNLYARKPMANQKNAFT-AQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred ------ceeeeeccEEEEecCCCCCCceEE-ecCCCCCCCCceEEEEecEEecC
Confidence 256899999975311 01122 1221 12235688999999764
No 102
>PLN02314 pectinesterase
Probab=82.13 E-value=10 Score=43.82 Aligned_cols=115 Identities=11% Similarity=0.111 Sum_probs=77.3
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ ..-.++||++.+.-.+=+|.
T Consensus 361 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~----- 433 (586)
T PLN02314 361 AAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN----- 433 (586)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC-----
Confidence 44677899999999987543333445543 56789999999999888877665 45689999999877765554
Q ss_pred CCCcEEeEEEEeeEEecCCc--e-EEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSNN--G-VRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~--G-I~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
-..+|+||.+.-... + -...+.+++ ...-..+.|.|++|....
T Consensus 434 -----a~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 -----AAVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -----ceeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 256899999974311 0 011122332 133456789999998743
No 103
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=81.67 E-value=11 Score=43.17 Aligned_cols=112 Identities=14% Similarity=0.097 Sum_probs=76.1
Q ss_pred eccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCCC
Q 040748 349 DNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNS 427 (584)
Q Consensus 349 ~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~~ 427 (584)
...+++..+|++|.+.........+-+. .+....+++|.|....|-+.... ..-.++||++.+.-.+=+|.
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 380 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN------ 380 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc------
Confidence 4567899999999987543334455554 56789999999999888776654 45689999999876665554
Q ss_pred CCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 428 RACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 428 ~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
....|+||++.-... .-.| +-+++ ...-..+.|.|++|...
T Consensus 381 ----a~avf~~C~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 ----AAAVFQNCIILPRRPLKGQANVI-TAQGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred ----cceEEeccEEEEecCCCCCcceE-ecCCCCCCCCCceEEEEeeEEecC
Confidence 256788998875321 1122 22232 12345788999999874
No 104
>PLN02634 probable pectinesterase
Probab=81.49 E-value=28 Score=37.71 Aligned_cols=18 Identities=11% Similarity=0.246 Sum_probs=13.2
Q ss_pred EEEeecCceEeeeeEecC
Q 040748 324 RFFMSSNLTVQRLRIKDS 341 (584)
Q Consensus 324 ~f~~s~nvtI~gvti~ns 341 (584)
.....+++..+||+|+|.
T Consensus 144 v~V~a~~F~a~niTf~Nt 161 (359)
T PLN02634 144 VTVYANYFTARNISFKNT 161 (359)
T ss_pred EEEECCCeEEEeCeEEeC
Confidence 334567888888888886
No 105
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=81.16 E-value=12 Score=43.04 Aligned_cols=115 Identities=13% Similarity=0.132 Sum_probs=77.3
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+..++ ..-.+++|++.+.-.+=+|.
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~----- 430 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGN----- 430 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccc-----
Confidence 34567899999999997543333444443 56789999999999888877665 45589999999876655543
Q ss_pred CCCcEEeEEEEeeEEecCCc--e-EEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSNN--G-VRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~--G-I~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
..+.|+||++.-... + ...-+.+++ ...-..+.|.|++|....
T Consensus 431 -----a~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 -----AAAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred -----eeEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 367899999984321 1 111122332 123456889999997643
No 106
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=78.42 E-value=7.9 Score=37.93 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=8.8
Q ss_pred cEEeEEEEeeEEecCC
Q 040748 430 CVSNITVRDSVIKVSN 445 (584)
Q Consensus 430 ~v~nI~I~Nit~~~s~ 445 (584)
++.|.+|||++|.+..
T Consensus 62 GF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 62 GFYNTLIENNVFDGVY 77 (198)
T ss_pred cccccEEEeeeecccc
Confidence 3455566666665543
No 107
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=77.97 E-value=24 Score=40.01 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=75.7
Q ss_pred eccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCCC
Q 040748 349 DNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNS 427 (584)
Q Consensus 349 ~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~~ 427 (584)
...+++..+|++|.+.........+-+. .+..+.+++|.|....|-+.... ..-.++||+|.+.-.+=+|.
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG~------ 338 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFGN------ 338 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEecc------
Confidence 4557889999999987543333444443 46789999999999888877665 34589999999776765554
Q ss_pred CCcEEeEEEEeeEEecCCc--e-E-EEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 428 RACVSNITVRDSVIKVSNN--G-V-RIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 428 ~~~v~nI~I~Nit~~~s~~--G-I-~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
....|+||++..... + - .| +.+++ ...-..+.|.|++|....
T Consensus 339 ----a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 339 ----AAAVFQNCYLFLRRPHGKSYNVI-LANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred ----cceeecccEEEEecCCCCCceEE-EecCCCCCCCCceEEEEeeEEecCC
Confidence 246889999874321 1 0 12 22222 123356889999998654
No 108
>PLN02773 pectinesterase
Probab=72.24 E-value=52 Score=35.15 Aligned_cols=82 Identities=7% Similarity=0.074 Sum_probs=46.8
Q ss_pred eEEEEeecCceEeeeeEecCCCc------eeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcE
Q 040748 322 ALRFFMSSNLTVQRLRIKDSPQF------HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCV 395 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns~~~------~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgI 395 (584)
.-.+..++++.+++|+|+|...- .+.+ ..+.+.+.+|+|... .|-+.... ..-.++||+|...=|-|
T Consensus 95 aTv~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v-~gDr~~f~~c~~~G~-----QDTL~~~~-gr~yf~~c~IeG~VDFI 167 (317)
T PLN02773 95 GTVIVEGEDFIAENITFENSAPEGSGQAVAIRV-TADRCAFYNCRFLGW-----QDTLYLHY-GKQYLRDCYIEGSVDFI 167 (317)
T ss_pred eEEEEECCCeEEEeeEEEeCCCCCCCcEEEEEe-cCccEEEEccEeecc-----cceeEeCC-CCEEEEeeEEeecccEE
Confidence 34555688999999999987321 1222 346667777777663 23333322 24566677776555533
Q ss_pred EeCCCceeEEEEecccCC
Q 040748 396 SIGSGCYDVDIRNITCGP 413 (584)
Q Consensus 396 ai~sgs~NV~I~Nc~~~~ 413 (584)
++ .....+++|++..
T Consensus 168 -FG--~g~a~Fe~c~i~s 182 (317)
T PLN02773 168 -FG--NSTALLEHCHIHC 182 (317)
T ss_pred -ee--ccEEEEEeeEEEE
Confidence 22 2456677776654
No 109
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=67.29 E-value=15 Score=40.30 Aligned_cols=68 Identities=32% Similarity=0.379 Sum_probs=38.8
Q ss_pred cccEEEEceE-EecCCCcEEeCCC-----------------------ceeEEEEecccCCCCcceeeccCCCCCCCcEEe
Q 040748 378 TNGVEIYNSV-ISNGDDCVSIGSG-----------------------CYDVDIRNITCGPGHGISIGSLGNHNSRACVSN 433 (584)
Q Consensus 378 S~nV~I~n~~-i~~gDDgIai~sg-----------------------s~NV~I~Nc~~~~g~GI~IGS~g~~~~~~~v~n 433 (584)
|-|..++|+. +..-.|||.+.+. -.|-.|+|....++.|+.+|.-| ..+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG---~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDG---KGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEEC---CS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecC---CCceEee
Confidence 5567777775 4567788888662 24667888888888888776554 3566666
Q ss_pred EEEEeeEEecCCceEEEEe
Q 040748 434 ITVRDSVIKVSNNGVRIKT 452 (584)
Q Consensus 434 I~I~Nit~~~s~~GI~Iks 452 (584)
|++++|- ..|+.+..
T Consensus 340 i~~~d~~----g~G~~~~~ 354 (549)
T PF09251_consen 340 ITVQDCA----GAGIFIRG 354 (549)
T ss_dssp EEEES-S----SESEEEEC
T ss_pred EEeeccc----CCceEEee
Confidence 6666553 34666554
No 110
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=61.10 E-value=2.7e+02 Score=30.94 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=15.8
Q ss_pred ccccCCCCcchHHHHHHHHH
Q 040748 195 FGAVGDGISDDTEAFKMTWD 214 (584)
Q Consensus 195 ~GA~gdg~tDdT~Aiq~Ai~ 214 (584)
.-+..|...|-.+|||+.|.
T Consensus 449 lP~~sDaRsdLL~aIr~Giq 468 (518)
T KOG1830|consen 449 LPPISDARSDLLAAIRSGIQ 468 (518)
T ss_pred CCCCCchHHHHHHHHHhcch
Confidence 34577888899999998775
No 111
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=61.00 E-value=89 Score=27.68 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=47.8
Q ss_pred EeecCceEeeeeEecC---CCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEc-eEEecCCCcEEe
Q 040748 326 FMSSNLTVQRLRIKDS---PQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYN-SVISNGDDCVSI 397 (584)
Q Consensus 326 ~~s~nvtI~gvti~ns---~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n-~~i~~gDDgIai 397 (584)
..+.+..|.+-.+.+. ..+++.+..+.+..+.+.++. . ... .+|++++...+..+.+ ..+....||+.+
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~-~~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~~ 145 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-T-NND-GDGNYLSDSSGGDLIGNRIYDNGRDGIAV 145 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-e-ecC-CCCEEEeCCCCcEEEcceeEecCCCcEee
Confidence 6667777777777765 378888887777666666665 1 112 6899998888888887 556666666643
No 112
>PLN02176 putative pectinesterase
Probab=56.16 E-value=1.6e+02 Score=31.87 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=11.1
Q ss_pred eecCceEeeeeEecC
Q 040748 327 MSSNLTVQRLRIKDS 341 (584)
Q Consensus 327 ~s~nvtI~gvti~ns 341 (584)
.++++..+||+|+|.
T Consensus 120 ~a~~F~a~nlT~~Nt 134 (340)
T PLN02176 120 YASNIIITGITFKNT 134 (340)
T ss_pred ECCCEEEEeeEEEeC
Confidence 567777777777775
No 113
>PF08047 His_leader: Histidine operon leader peptide; InterPro: IPR012565 This family consists of the leader peptide of the histidine (his) operon. The his operon contains all the genes necessary for histidine biosynthesis. The region corresponding to the untranslated 5'-end of the transcript, named the his leader region, displays the typical features of the T box transcriptional attenuation mechanism which is involved in the regulation of many amino acid biosynthetic operons [].; GO: 0000105 histidine biosynthetic process
Probab=52.93 E-value=6 Score=22.94 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=3.4
Q ss_pred eeecccc
Q 040748 22 SVQARRH 28 (584)
Q Consensus 22 ~~~~~~~ 28 (584)
+||-|.|
T Consensus 3 rvqfk~h 9 (16)
T PF08047_consen 3 RVQFKHH 9 (16)
T ss_pred eeEeccc
Confidence 4565443
No 114
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=52.28 E-value=4e+02 Score=30.26 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=6.5
Q ss_pred CCCCcchHHHHHH
Q 040748 199 GDGISDDTEAFKM 211 (584)
Q Consensus 199 gdg~tDdT~Aiq~ 211 (584)
|||..|-.+.|++
T Consensus 492 ~dgR~~LmaqIRq 504 (569)
T KOG3671|consen 492 GDGRDALMAQIRQ 504 (569)
T ss_pred cccHHHHHHHHHh
Confidence 5555544444443
No 115
>PLN02432 putative pectinesterase
Probab=47.72 E-value=2.2e+02 Score=30.17 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=12.2
Q ss_pred EEeecCceEeeeeEecC
Q 040748 325 FFMSSNLTVQRLRIKDS 341 (584)
Q Consensus 325 f~~s~nvtI~gvti~ns 341 (584)
....+++.++||+|+|.
T Consensus 90 ~v~a~~f~a~nlt~~Nt 106 (293)
T PLN02432 90 SVLASDFVGRFLTIQNT 106 (293)
T ss_pred EEECCCeEEEeeEEEeC
Confidence 44567778888888775
No 116
>PRK09752 adhesin; Provisional
Probab=44.84 E-value=5.9e+02 Score=32.15 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=31.1
Q ss_pred ccEEEEeEEEECCCCCCCCCceeecCcc-----cEEEEceEEecCC----CcEEeCCCceeEEEEecccCC
Q 040748 352 KNVHIESIHITAPALSPNTDGIHIENTN-----GVEIYNSVISNGD----DCVSIGSGCYDVDIRNITCGP 413 (584)
Q Consensus 352 ~nV~I~nv~I~~~~~~~ntDGI~i~~S~-----nV~I~n~~i~~gD----DgIai~sgs~NV~I~Nc~~~~ 413 (584)
..+.|.++.|.+.....+.-.|...+.. .+.|.|+.|.+.. .+=+|.....++.|.||.|.+
T Consensus 121 ~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN~A~~G~GGAIYs~ng~vtIsnS~F~n 191 (1250)
T PRK09752 121 STLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDN 191 (1250)
T ss_pred ceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEccccccCCCCEEEEccCcEEEEeeEEeC
Confidence 3467777777765322233345544322 3667777776431 111232222456666666654
No 117
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=43.43 E-value=2.2e+02 Score=30.03 Aligned_cols=136 Identities=15% Similarity=0.149 Sum_probs=67.5
Q ss_pred EEEeecCceEeeeeEecCCCc------eeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEe
Q 040748 324 RFFMSSNLTVQRLRIKDSPQF------HFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSI 397 (584)
Q Consensus 324 ~f~~s~nvtI~gvti~ns~~~------~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai 397 (584)
.....+++.+++|+|+|.... .+.+ ..+.+.+.+|+|... .|-+.... ....++||+|...-|-| +
T Consensus 82 ~~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~-----QDTL~~~~-~r~y~~~c~IeG~vDFI-f 153 (298)
T PF01095_consen 82 FSVNADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGY-----QDTLYANG-GRQYFKNCYIEGNVDFI-F 153 (298)
T ss_dssp EEE-STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-S-----TT-EEE-S-SEEEEES-EEEESEEEE-E
T ss_pred ccccccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccc-----cceeeecc-ceeEEEeeEEEecCcEE-E
Confidence 344678999999999986322 2333 456778888888773 44454443 24677788887766643 3
Q ss_pred CCCceeEEEEecccCCC-----CcceeeccCCCCCCCcEEeEEEEeeEEecCC--------ceEEEEeecCCCCeEEeEE
Q 040748 398 GSGCYDVDIRNITCGPG-----HGISIGSLGNHNSRACVSNITVRDSVIKVSN--------NGVRIKTWQGGSGAVSGIT 464 (584)
Q Consensus 398 ~sgs~NV~I~Nc~~~~g-----~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~--------~GI~Iks~~g~~G~V~NIt 464 (584)
+. ....++||++..- .+-.|-..+ +.....-..++|.||++.... ....+.--+ +.-..+.
T Consensus 154 G~--~~a~f~~c~i~~~~~~~~~~~~ItA~~-r~~~~~~~G~vF~~c~i~~~~~~~~~~~~~~~yLGRpW---~~~s~vv 227 (298)
T PF01095_consen 154 GN--GTAVFENCTIHSRRPGGGQGGYITAQG-RTSPSQKSGFVFDNCTITGDSGVSPSYSDGSVYLGRPW---GPYSRVV 227 (298)
T ss_dssp ES--SEEEEES-EEEE--SSTSSTEEEEEE----CTTSS-EEEEES-EEEESTTTCGGCCCSTEEEE--S---SEETEEE
T ss_pred CC--eeEEeeeeEEEEeccccccceeEEeCC-ccccCCCeEEEEEEeEEecCccccccccceeEEecCcc---cceeeEE
Confidence 33 3566888877631 111221111 011233457788888887542 122332211 1345677
Q ss_pred EEceEEcCC
Q 040748 465 FSNIHMNNV 473 (584)
Q Consensus 465 f~NI~i~~v 473 (584)
|.|..|.+.
T Consensus 228 f~~t~m~~~ 236 (298)
T PF01095_consen 228 FINTYMDDH 236 (298)
T ss_dssp EES-EE-TT
T ss_pred EEccccCCe
Confidence 888777764
No 118
>PLN02916 pectinesterase family protein
Probab=41.72 E-value=3.6e+02 Score=30.76 Aligned_cols=114 Identities=13% Similarity=0.114 Sum_probs=77.8
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+++|.|....|-+...+ .+-.++||+|.+.-.+=+|.
T Consensus 273 ~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 345 (502)
T PLN02916 273 GVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHS--LRQFYRDCHIYGTIDFIFGD----- 345 (502)
T ss_pred EEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCC--CCEEEEecEEecccceeccC-----
Confidence 44567899999999987543344455544 56789999999999989887765 45689999999877765554
Q ss_pred CCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
-...|+||.+.-... .-.|- .+++ ...-..+.|.|++|....
T Consensus 346 -----a~avFq~C~I~~~~~~~~~~g~IT-Aq~r~~~~~~tGfvf~~C~it~~~ 393 (502)
T PLN02916 346 -----AAVVFQNCDIFVRRPMDHQGNMIT-AQGRDDPHENTGISIQHSRVRASP 393 (502)
T ss_pred -----ceEEEecCEEEEecCCCCCcceEE-ecCCCCCCCCcEEEEEeeEEecCc
Confidence 266889999874321 11232 2222 123357889999998643
No 119
>PRK09727 his operon leader peptide; Provisional
Probab=41.72 E-value=11 Score=24.38 Aligned_cols=12 Identities=50% Similarity=0.935 Sum_probs=6.5
Q ss_pred ccccccccccce
Q 040748 31 IKHKHTHHHNTY 42 (584)
Q Consensus 31 ~~~~~~~~~~~~ 42 (584)
.||.|.|||-..
T Consensus 6 fkhhhhhhhpd~ 17 (26)
T PRK09727 6 FKHHHHHHHPDX 17 (26)
T ss_pred eeccccccCCCc
Confidence 355566666543
No 120
>PLN02671 pectinesterase
Probab=41.24 E-value=3.4e+02 Score=29.61 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=39.6
Q ss_pred eEEEEeecCceEeeeeEecCCC--------ce--eeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecC
Q 040748 322 ALRFFMSSNLTVQRLRIKDSPQ--------FH--FRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNG 391 (584)
Q Consensus 322 ~I~f~~s~nvtI~gvti~ns~~--------~~--I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~g 391 (584)
.-.....+++..+||+|+|... .. +.+ ..+.+.+.+|+|... .|-+.... -.-.++||+|...
T Consensus 147 aTv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv-~gDra~f~~c~f~G~-----QDTLy~~~-gR~yf~~CyIeG~ 219 (359)
T PLN02671 147 ASVTIESDYFCATGITFENTVVAEPGGQGMQAVALRI-SGDKAFFYKVRVLGA-----QDTLLDET-GSHYFYQCYIQGS 219 (359)
T ss_pred EEEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEE-cCccEEEEcceEecc-----ccccEeCC-CcEEEEecEEEEe
Confidence 3445567888888888888621 01 222 245555555555552 22222111 1235555555544
Q ss_pred CCcEEeCCCceeEEEEecccC
Q 040748 392 DDCVSIGSGCYDVDIRNITCG 412 (584)
Q Consensus 392 DDgIai~sgs~NV~I~Nc~~~ 412 (584)
=|-| ++. ....++||++.
T Consensus 220 VDFI-FG~--g~A~Fe~C~I~ 237 (359)
T PLN02671 220 VDFI-FGN--AKSLYQDCVIQ 237 (359)
T ss_pred ccEE-ecc--eeEEEeccEEE
Confidence 4422 222 34555555554
No 121
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=40.93 E-value=2.5e+02 Score=32.27 Aligned_cols=115 Identities=13% Similarity=0.107 Sum_probs=78.4
Q ss_pred eeeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCC
Q 040748 346 FRFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGN 424 (584)
Q Consensus 346 I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~ 424 (584)
......+++..+|++|.+.....+...+-+. .+..+.+.+|.|....|-+.... ..-.++||+|.+.-.+=+|.
T Consensus 313 T~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~--- 387 (537)
T PLN02506 313 TVAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN--- 387 (537)
T ss_pred EEEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC---
Confidence 3455678999999999997543334445443 57789999999999888777655 45689999999877765654
Q ss_pred CCCCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 425 HNSRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 425 ~~~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
-...|+||++.-... .-.| +.+++ ...-..+.|.|+++...
T Consensus 388 -------a~avfq~C~i~~r~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 388 -------GAAVLQNCKIYTRVPLPLQKVTI-TAQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred -------ceeEEeccEEEEccCCCCCCceE-EccCCCCCCCCcEEEEEcCEEccC
Confidence 257899999985321 1122 22222 12235678999999763
No 122
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=40.23 E-value=2.2e+02 Score=32.88 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=13.5
Q ss_pred EEEEeecCceEeeeeEecCC
Q 040748 323 LRFFMSSNLTVQRLRIKDSP 342 (584)
Q Consensus 323 I~f~~s~nvtI~gvti~ns~ 342 (584)
-.....+++..+||+|+|..
T Consensus 324 T~~v~~~~f~a~~it~~Nta 343 (553)
T PLN02708 324 TVGVLGDGFMARDLTIQNTA 343 (553)
T ss_pred EEEEEcCCeEEEeeEEEcCC
Confidence 34445677888888887753
No 123
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=39.89 E-value=39 Score=37.37 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=37.4
Q ss_pred ceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEeccc-CCC-CcceeeccCCCCCCCcEEeEEEEeeEEecC-CceE
Q 040748 372 GIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITC-GPG-HGISIGSLGNHNSRACVSNITVRDSVIKVS-NNGV 448 (584)
Q Consensus 372 GI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~-~~g-~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s-~~GI 448 (584)
|+.+.-..|=+|..+.|.+++.|+-+..+.-- .++++++ .++ .|+.|++. ++=+++.+.+.+. +.||
T Consensus 420 gvqirtGsNP~i~~NkIWggqNGvLVyn~G~G-c~E~NeIFDNaMagVwIKTd---------s~PtlrRNKI~dgRdgGi 489 (625)
T KOG1777|consen 420 GVQIRTGSNPKIRRNKIWGGQNGVLVYNGGLG-CLEDNEIFDNAMAGVWIKTD---------SNPTLRRNKIYDGRDGGI 489 (625)
T ss_pred ceEeecCCCCeeeecceecCcccEEEEcCccc-ccccccchhhhhcceEEecC---------CCcceeecceecCCCCcE
Confidence 44444334566777777777777655442111 2333333 233 45666542 2345555555544 2355
Q ss_pred EEEeecCCCCe
Q 040748 449 RIKTWQGGSGA 459 (584)
Q Consensus 449 ~Iks~~g~~G~ 459 (584)
.|-. |+.|.
T Consensus 490 cifn--gGkGl 498 (625)
T KOG1777|consen 490 CIFN--GGKGL 498 (625)
T ss_pred EEec--CCcee
Confidence 5533 44443
No 124
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=39.68 E-value=15 Score=25.78 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=19.4
Q ss_pred hheeeeeeccccccccccccccccc
Q 040748 17 LGFILSVQARRHHSIKHKHTHHHNT 41 (584)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (584)
.|+++|+-.||||+++--+..--|-
T Consensus 1 MG~~~s~Ckrr~n~l~Dv~G~~Inl 25 (32)
T PF10813_consen 1 MGSLLSMCKRRHNPLKDVKGNPINL 25 (32)
T ss_pred CcceeeeeeccCCcccccCCCEEec
Confidence 4889999999999998766544443
No 125
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=37.29 E-value=1.5e+02 Score=32.94 Aligned_cols=174 Identities=17% Similarity=0.280 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEeccc-ccCCC---CcchHHH-HHHHHHHHhhcCCc---
Q 040748 151 TRTPSPSSGPAAPPNKGNDYNSPGAPTTSPANSPDDGNVIDVRKFG-AVGDG---ISDDTEA-FKMTWDSACQKDFA--- 222 (584)
Q Consensus 151 ~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G-A~gdg---~tDdT~A-iq~Ai~~a~~~~g~--- 222 (584)
.++.+.-|.|+||++.++.+...-.+.............+-=..-| +.--| +|||..- =+-++.+.+.....
T Consensus 229 ~~s~~g~PPPPPP~PPp~~~~~~~~~~~~~~~k~~~~AlFaqlNqGe~iTsgLkkVt~dmkThKNP~LR~~~~~~~~~~~ 308 (480)
T KOG2675|consen 229 AASAPGAPPPPPPAPPPAPFFADSNPPSSDANKGGRGALFAQLNQGEGITSGLKKVTDDMKTHKNPNLRATSGVPASGPK 308 (480)
T ss_pred cccCCCCCCCCCCCCCCcccccccCCCCcccccccHHHHHHHHhccchhhhhhhhCChhhhcccChhhhccCCCCCCCCC
Q ss_pred -----------------EEEEcCCeEEEeeeeeeecccCCceEEeee-eeecCCCCCCcccccCCcceeEEEeeeeceEE
Q 040748 223 -----------------VIHVPYGFSFMIQSTIFTGPCQGSIVFQVD-GTIMPPDGPESWLQKNSKRQWLVFYKINELSL 284 (584)
Q Consensus 223 -----------------~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~-GtL~~s~~~~~~~~~~~~~~lI~~~~~~NVtI 284 (584)
.+-|- |+.|++... -.+-.|.++ ..++.+ +++++|+|.+|
T Consensus 309 ~~~~~Psk~~~~~k~pp~~ELe-GkkW~VEnq------~~~~~~Vi~~~e~kqs---------------vyIykC~~s~i 366 (480)
T KOG2675|consen 309 QGSSSPSKSAAPKKKPPVKELE-GKKWRVENQ------ENNKNLVIDDAELKQS---------------VYIYKCSNSTI 366 (480)
T ss_pred CCCCCCCcccCCCCCCCceeec-cceEEEeee------cCCcceeeeeccccce---------------EEEEeccceEE
Q ss_pred ecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECC
Q 040748 285 QGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAP 364 (584)
Q Consensus 285 ~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~ 364 (584)
.=.|.++ .|.+.+|+.+.+ +.+..--.+.+..|++|.|+=+--.-.
T Consensus 367 qIkGKvN------------------------------sItld~Ckk~sv----VfD~~Va~~eiinc~~v~iQv~g~~Pt 412 (480)
T KOG2675|consen 367 QIKGKVN------------------------------SITLDNCKKTSV----VFDDLVAIVEIINCQDVQIQVMGSVPT 412 (480)
T ss_pred EEeceee------------------------------eEEecCCceeeE----EEeccceeeEEeeccceeeEEcccCCe
Q ss_pred CCCCCCCceeecCccc
Q 040748 365 ALSPNTDGIHIENTNG 380 (584)
Q Consensus 365 ~~~~ntDGI~i~~S~n 380 (584)
-.-.++||-++.=|++
T Consensus 413 iSI~ktdGc~iYLSk~ 428 (480)
T KOG2675|consen 413 ISIDKTDGCHIYLSKD 428 (480)
T ss_pred EEEecCCCeeEEeccc
No 126
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=36.22 E-value=1e+03 Score=30.28 Aligned_cols=11 Identities=36% Similarity=0.549 Sum_probs=6.6
Q ss_pred ecccCCCCCCC
Q 040748 43 EFSETPSPSPS 53 (584)
Q Consensus 43 ~~~~~~~~~~~ 53 (584)
.|++..||.+|
T Consensus 1435 ~~~~~~sp~~s 1445 (1605)
T KOG0260|consen 1435 NMSSPASPGSS 1445 (1605)
T ss_pred ccCCCCCCCCC
Confidence 36666666555
No 127
>PLN02304 probable pectinesterase
Probab=35.65 E-value=3.5e+02 Score=29.67 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=13.1
Q ss_pred EEEeecCceEeeeeEecC
Q 040748 324 RFFMSSNLTVQRLRIKDS 341 (584)
Q Consensus 324 ~f~~s~nvtI~gvti~ns 341 (584)
.....+++..+||+|+|.
T Consensus 157 v~v~a~~F~a~nITf~Nt 174 (379)
T PLN02304 157 VQVFASNFIAKNISFMNV 174 (379)
T ss_pred EEEECCCeEEEeeEEEec
Confidence 344567888888888876
No 128
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=33.87 E-value=1.7e+02 Score=34.69 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=4.6
Q ss_pred CCCCCC-CCCCCC
Q 040748 154 PSPSSG-PAAPPN 165 (584)
Q Consensus 154 ~~p~~~-p~~~~~ 165 (584)
|||+|. |+-.|.
T Consensus 1041 ~PpPp~~~~k~p~ 1053 (1106)
T KOG0162|consen 1041 KPPPPAKPPKNPV 1053 (1106)
T ss_pred CccCCCCCCCCcc
Confidence 333333 433333
No 129
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=33.61 E-value=2.3e+02 Score=24.88 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=8.5
Q ss_pred ecCceEeeeeEec
Q 040748 328 SSNLTVQRLRIKD 340 (584)
Q Consensus 328 s~nvtI~gvti~n 340 (584)
..+++++|+++.+
T Consensus 44 ~~~~~~~G~~~~~ 56 (146)
T smart00722 44 SNDVRVDGITIGG 56 (146)
T ss_pred CCCCEEECeEEEe
Confidence 4555777777765
No 130
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=33.46 E-value=6.1e+02 Score=29.19 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=76.5
Q ss_pred eeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748 347 RFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH 425 (584)
Q Consensus 347 ~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~ 425 (584)
.....+++..+|++|.+.........+-+. .+..+.+.+|.|....|-+.... ..-.+++|+|.+.-.+=+|.
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~---- 373 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGN---- 373 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccC----
Confidence 344567899999999997543334455554 46789999999999888777655 45689999999877765554
Q ss_pred CCCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 426 NSRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 426 ~~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
....|+||.+.-... .-.|- .+++ ...-..+.|.|+++...
T Consensus 374 ------a~avFq~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ------AAVVFQNCSLYARKPNPNHKIAFT-AQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ------ceEEEeccEEEEeccCCCCceEEE-ecCCCCCCCCceEEEEeeEEecC
Confidence 246788888874321 11222 2222 12234678999999764
No 131
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=32.25 E-value=2.6e+02 Score=32.56 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=78.2
Q ss_pred eeeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748 347 RFDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH 425 (584)
Q Consensus 347 ~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~ 425 (584)
.....+++..+|++|.+.........+-+. .+....+.||.|....|-+...+ ..-.++||+|.+.-.+=+|.
T Consensus 355 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~---- 428 (587)
T PLN02484 355 FAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN---- 428 (587)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc----
Confidence 344667899999999987543333455544 56789999999999888777655 45689999999877765554
Q ss_pred CCCCcEEeEEEEeeEEecCC----ceEEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 426 NSRACVSNITVRDSVIKVSN----NGVRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 426 ~~~~~v~nI~I~Nit~~~s~----~GI~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
-...|+||.+.-.. ..-.| +.+++ ...-..+.|.|++|....
T Consensus 429 ------a~avfq~C~i~~~~~~~~~~~~I-TAq~r~~~~~~~G~vf~~c~i~~~~ 476 (587)
T PLN02484 429 ------AAVVLQNCSIYARKPMAQQKNTI-TAQNRKDPNQNTGISIHACRILAAS 476 (587)
T ss_pred ------ceeEEeccEEEEecCCCCCceEE-EecCCCCCCCCcEEEEEeeEEecCC
Confidence 25689999997431 11122 22222 123457889999997643
No 132
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=31.66 E-value=3.7e+02 Score=30.80 Aligned_cols=113 Identities=10% Similarity=0.110 Sum_probs=76.7
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+++|.|....|-+.... ..-.++||+|.+.-.+=+|.
T Consensus 289 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 361 (520)
T PLN02201 289 AVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGD----- 361 (520)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecC-----
Confidence 44567899999999997543334455544 46789999999999999887765 44578999999877765654
Q ss_pred CCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 427 SRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
-...|+||++..... .-.|-. +++ ...-..+.|.|++|...
T Consensus 362 -----a~avf~~C~i~~~~~~~~~~~~iTA-q~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 -----ATAVFQNCQILAKKGLPNQKNTITA-QGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred -----ceEEEEccEEEEecCCCCCCceEEe-cCCCCCCCCcEEEEEeeEEecC
Confidence 257899999875310 112222 222 12335678999999764
No 133
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=31.54 E-value=3.1e+02 Score=31.80 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=77.8
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+.... ..-.++||+|.+.-.+=+|.
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 408 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN----- 408 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc-----
Confidence 34568999999999997543344455543 56789999999999999887765 45689999999877765554
Q ss_pred CCCcEEeEEEEeeEEecCCc--e--EEEEeecCC--CCeEEeEEEEceEEcCC
Q 040748 427 SRACVSNITVRDSVIKVSNN--G--VRIKTWQGG--SGAVSGITFSNIHMNNV 473 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~--G--I~Iks~~g~--~G~V~NItf~NI~i~~v 473 (584)
-.+.|+||.+..... + -.| +.+++ ...-..+.|.|++|...
T Consensus 409 -----a~avfq~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 -----AAVVFQNCNLYPRLPMQGQFNTI-TAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred -----ceEEEeccEEEEecCCCCCccee-eecCCCCCCCCCEEEEEcCEEecC
Confidence 367899999975321 1 122 22222 12235688999999764
No 134
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=31.47 E-value=59 Score=19.74 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=8.4
Q ss_pred cEEEEceEEecCCC-cEEe
Q 040748 380 GVEIYNSVISNGDD-CVSI 397 (584)
Q Consensus 380 nV~I~n~~i~~gDD-gIai 397 (584)
+++|++|.|..... ||.+
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i 21 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYI 21 (26)
T ss_pred CEEEECCEEEeCCCCcEEE
Confidence 45555555543322 4444
No 135
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=30.92 E-value=1.1e+02 Score=32.76 Aligned_cols=41 Identities=17% Similarity=0.091 Sum_probs=25.0
Q ss_pred eEEEecccccCCCCcchHHHHHHHHHHHh--------hcC--CcEEEEcCC
Q 040748 189 VIDVRKFGAVGDGISDDTEAFKMTWDSAC--------QKD--FAVIHVPYG 229 (584)
Q Consensus 189 ~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~--------~~~--g~~v~~p~G 229 (584)
..-|-.-|+.|+..+-=-+|+++|+.+-. ..+ -++|+||+-
T Consensus 81 ~~avvsa~a~G~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e~v~Vp~~ 131 (405)
T COG4677 81 DFAVVSAGAQGVTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQETVYVPAA 131 (405)
T ss_pred ceeEEecCCCccchHHHHHHHhhhcccCCCceEEEEEccceeceeEEecCC
Confidence 34445566777666667778888865432 122 367787765
No 136
>PLN02497 probable pectinesterase
Probab=30.47 E-value=6.7e+02 Score=27.00 Aligned_cols=18 Identities=17% Similarity=0.207 Sum_probs=12.9
Q ss_pred EEeecCceEeeeeEecCC
Q 040748 325 FFMSSNLTVQRLRIKDSP 342 (584)
Q Consensus 325 f~~s~nvtI~gvti~ns~ 342 (584)
....+++..+||+|+|..
T Consensus 111 ~v~a~~f~a~nlT~~Nt~ 128 (331)
T PLN02497 111 STLADNTVVKSITFANSY 128 (331)
T ss_pred EEecCCeEEEccEEEeCC
Confidence 345677888888888763
No 137
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=30.14 E-value=1.4e+02 Score=33.48 Aligned_cols=12 Identities=8% Similarity=0.390 Sum_probs=6.2
Q ss_pred ccEEEEeEEEEC
Q 040748 352 KNVHIESIHITA 363 (584)
Q Consensus 352 ~nV~I~nv~I~~ 363 (584)
.+++|.+|.|..
T Consensus 162 pD~e~N~c~F~~ 173 (465)
T PF01690_consen 162 PDLELNGCHFND 173 (465)
T ss_pred CCceecCccccc
Confidence 455555555544
No 138
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.12 E-value=1.7e+02 Score=30.64 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=17.5
Q ss_pred cccccccccccceecccCCCCCCCC
Q 040748 30 SIKHKHTHHHNTYEFSETPSPSPSP 54 (584)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (584)
--|-|-|.-||-..=-|+|.|++.+
T Consensus 138 YAkWKat~I~~clk~G~~p~Pg~~~ 162 (338)
T KOG0917|consen 138 YAKWKATYIHNCLKNGETPQPGPVG 162 (338)
T ss_pred HhHHHHHHHHHHHhCCCCCCCCCCC
Confidence 3466777888887777887766544
No 139
>PRK09752 adhesin; Provisional
Probab=29.92 E-value=1.2e+03 Score=29.65 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=31.6
Q ss_pred cEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecC---CC--cEEeCCC----ceeEEEEecccCCC
Q 040748 353 NVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNG---DD--CVSIGSG----CYDVDIRNITCGPG 414 (584)
Q Consensus 353 nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~g---DD--gIai~sg----s~NV~I~Nc~~~~g 414 (584)
+..+.+.++.... .+.-+|.-.....+.|.+|.|.+. .. +|..... .-.+.|.|+.|.+.
T Consensus 97 ~t~F~nNtasG~~--~sGGAIya~~~~~itI~ns~F~nN~A~g~GGAIYa~G~n~~g~v~l~I~NS~F~nN 165 (1250)
T PRK09752 97 MTLFANNTVSGEY--NNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNN 165 (1250)
T ss_pred ceEeecceecCCc--CCccEEEecCcceeEEeeeEEEccccCCCCCEEEEcccCCCcceEEEEEecEEEcc
Confidence 5566666666421 122234333334578888888742 12 3333221 12478888888653
No 140
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=29.89 E-value=7.4e+02 Score=28.77 Aligned_cols=114 Identities=19% Similarity=0.242 Sum_probs=77.9
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+++|.|....|-+...+ ..-.+++|++.+.-.+=+|.
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~----- 415 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD----- 415 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-----
Confidence 34567999999999997543334455554 56789999999999888777655 45689999999877765554
Q ss_pred CCCcEEeEEEEeeEEecCCc--e--EEEEeecCCC--CeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSNN--G--VRIKTWQGGS--GAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~--G--I~Iks~~g~~--G~V~NItf~NI~i~~v~ 474 (584)
-...|+||++.-... + -.| +.+++. ..-..+.|.|++|....
T Consensus 416 -----a~avf~~C~i~~~~~~~~~~~~i-TAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 -----AKVVLQNCNIVVRKPMKGQSCMI-TAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred -----ceEEEEccEEEEecCCCCCceEE-EeCCCCCCCCCceEEEEeeEEecCc
Confidence 257899999974321 1 123 222321 22356889999998753
No 141
>PHA03358 Alkaline exonuclease; Provisional
Probab=29.07 E-value=17 Score=29.92 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=22.5
Q ss_pred hheeeeeecccccccccccccccccee
Q 040748 17 LGFILSVQARRHHSIKHKHTHHHNTYE 43 (584)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (584)
+|.++|+-.||||+||--|..--|-|+
T Consensus 1 MGal~SiC~RR~nPl~DV~G~~INl~e 27 (75)
T PHA03358 1 MGALWSLCRRRVNSIGDVDGGIINLYN 27 (75)
T ss_pred CcchhhhhhccCCcccccCCCEechHH
Confidence 366788889999999998888888774
No 142
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=28.52 E-value=5.4e+02 Score=29.43 Aligned_cols=114 Identities=12% Similarity=0.028 Sum_probs=79.0
Q ss_pred eeccccEEEEeEEEECCCCCCCCCceeec-CcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCCC
Q 040748 348 FDNCKNVHIESIHITAPALSPNTDGIHIE-NTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426 (584)
Q Consensus 348 i~~s~nV~I~nv~I~~~~~~~ntDGI~i~-~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~~ 426 (584)
....+++..+|++|.+.........+-+. .+....+.+|.|....|-+...+ .+-.+++|++.+.-.+=+|.
T Consensus 280 ~v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~----- 352 (509)
T PLN02488 280 ASNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN----- 352 (509)
T ss_pred EEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-----
Confidence 34567889999999987543334555554 56789999999999888887655 46789999999877765554
Q ss_pred CCCcEEeEEEEeeEEecCCc----eEEEEeecCC--CCeEEeEEEEceEEcCCc
Q 040748 427 SRACVSNITVRDSVIKVSNN----GVRIKTWQGG--SGAVSGITFSNIHMNNVR 474 (584)
Q Consensus 427 ~~~~v~nI~I~Nit~~~s~~----GI~Iks~~g~--~G~V~NItf~NI~i~~v~ 474 (584)
-.+.|+||++..... .-.| +.+++ ...-..+.|.|+++....
T Consensus 353 -----a~avFq~C~I~sr~~~~~~~~~I-TAq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 -----AAAVFQFCQIVARQPMMGQSNVI-TAQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred -----eEEEEEccEEEEecCCCCCCEEE-EeCCCCCCCCCcEEEEEeeEEecCC
Confidence 367899999985321 1123 22332 122356889999998754
No 143
>PRK09697 protein secretion protein GspB; Provisional
Probab=23.01 E-value=59 Score=29.36 Aligned_cols=47 Identities=30% Similarity=0.505 Sum_probs=26.1
Q ss_pred eeeeeehhhhhhheee-------------------eeeccccc---cccccccccccceecccCCCCCCCC
Q 040748 6 RVSILIFCICFLGFIL-------------------SVQARRHH---SIKHKHTHHHNTYEFSETPSPSPSP 54 (584)
Q Consensus 6 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (584)
.-+-+||.||+||..| .+|+||-- +-.-|.+..| |-|...|-|-|-.
T Consensus 24 ~~~TI~~Vi~L~~~~L~~AG~~~~GGYA~Qlwvlw~~k~~~T~~~~tP~~~Qs~qH--~~FKKqPLPV~E~ 92 (139)
T PRK09697 24 KHSTIIYVICLLLICLWFAGMVLVGGYARQLWVLWIVKAEVTVEAETPAFKQSTQH--YFFKKQPLPVVES 92 (139)
T ss_pred hccchHHHHHHHHHHHHHhcceeechhHHHHHHHHHHhhhheecCCCcchhhhhhh--eeeecCCCCCccc
Confidence 3466778887776443 35666643 2233444444 6666666665543
No 144
>PHA03307 transcriptional regulator ICP4; Provisional
Probab=22.32 E-value=1.7e+03 Score=28.48 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=25.1
Q ss_pred CCCCCceEEEecccccCC---CCcchHHHHHHHHHHHhhcCCcEEEEcC
Q 040748 183 SPDDGNVIDVRKFGAVGD---GISDDTEAFKMTWDSACQKDFAVIHVPY 228 (584)
Q Consensus 183 ~~~~~~~~~v~~~GA~gd---g~tDdT~Aiq~Ai~~a~~~~g~~v~~p~ 228 (584)
.+...++. ||-.|| |..|+=+..+++-.+++..+-.-||||+
T Consensus 445 pPPpGRvr----yGG~GdsR~GLwd~PEv~~A~~Ry~as~gPvPVyVpE 489 (1352)
T PHA03307 445 PPPPGRVR----YGGLGDSRPGLWDAPEVREAAARYEASPGPVPVYVPE 489 (1352)
T ss_pred CCCCCcee----ecCCCCCCccccCCHHHHHHHHHHhccCCCcceechh
Confidence 34444544 888886 5676655555554544433347889886
No 145
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=21.89 E-value=1e+03 Score=28.66 Aligned_cols=10 Identities=0% Similarity=-0.091 Sum_probs=4.5
Q ss_pred CceEEEeccc
Q 040748 187 GNVIDVRKFG 196 (584)
Q Consensus 187 ~~~~~v~~~G 196 (584)
..+.-+-+|-
T Consensus 1052 p~~~A~Y~y~ 1061 (1106)
T KOG0162|consen 1052 PVCEALYDYP 1061 (1106)
T ss_pred cceeeeccCC
Confidence 3444444553
No 146
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=20.24 E-value=1.4e+02 Score=34.67 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=19.5
Q ss_pred cccccceecccCCCCCCCCCccCCCCCC
Q 040748 36 THHHNTYEFSETPSPSPSPQLTDPSNNT 63 (584)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (584)
||--|+|.+--.||+.|++|-..+--++
T Consensus 436 ti~gnt~~~hv~pS~~~~~qg~~~~~~~ 463 (807)
T KOG1094|consen 436 TVPGNTILIHVRPSPREPPQGQEPRPRG 463 (807)
T ss_pred eccCCceeeccCCCCCCCCCcccccccC
Confidence 5667888888888888877766554443
Done!