BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040749
(643 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 108 bits (270), Expect = 8e-24, Method: Composition-based stats.
Identities = 41/73 (56%), Positives = 57/73 (78%)
Query: 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALK 331
P F CPI+LE+M+DPVI+++GQT+ER S+QKW D+ H+TCPK+++TL H + PNY LK
Sbjct: 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 332 NLILQWCEKNNFK 344
+LI WCE N +
Sbjct: 66 SLIALWCESNGIE 78
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL 421
E+ + +QL+S ++ Q A RK ++LS N + + +I D GA+P LVQLL P+ +IL
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQIL 71
Query: 422 EHAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI 480
+ A+ A+ N++ + + + + GA+PA++++L S + + + + AL +++ +I
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 481 TIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA-IDAGIVLPLMNLLEE 538
+ G +P LV LL + + ++A+ AL N++ + +A IDAG + L+ LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 539 RNLGMVDEALSILLLLAT 556
N ++ EAL L +A+
Sbjct: 192 PNEQILQEALWALSNIAS 209
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 109/199 (54%), Gaps = 5/199 (2%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL 421
E+ + +QL+S ++ Q A RK ++LS N + + +I D GA+P LVQLL P+ +IL
Sbjct: 13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQIL 71
Query: 422 EHAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI 480
+ A+ A+ N++ + + + + GA+PA++++L S + + + + AL +++ +I
Sbjct: 72 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 481 TIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEE 538
+ G +P LV LL + + ++A+ AL N++ + +A+ +AG + L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 539 RNLGMVDEALSILLLLATH 557
N + EA L L +H
Sbjct: 192 ENEKIQKEAQEALEKLQSH 210
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 22/215 (10%)
Query: 343 FKLPKKDDSETSECTAEQKEEIVS-----------------LVEQLSSSKLEVQKEAVRK 385
KL DSET + A EI S LV+ L+S+ EVQKEA R
Sbjct: 8 VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 67
Query: 386 IRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI--DESNKRLIAQ 443
+ ++ E I D G + LV+LL DS++ + A A+ N++ DE+ K ++
Sbjct: 68 LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-D 126
Query: 444 QGAIPAIIEILQSGSTEARENSAAALFSL-SMLDENKITIGLSDGIPPLVDLLQNGTIRG 502
G + ++++L S +E ++ +A AL ++ S DE I + G+ LV LL +
Sbjct: 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 186
Query: 503 KKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLL 536
+K+A AL N++ + +AI DAG V L LL
Sbjct: 187 QKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 7/197 (3%)
Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHAV 425
LV+ L+S+ E QKEA R + ++ P + I I D G + LV+LL DS++ + A
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIAS-GPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAA 65
Query: 426 TAVLNLSI--DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL-SMLDENKITI 482
A+ N++ DE+ K ++ G + ++++L S +E ++ +A AL ++ S DE I
Sbjct: 66 RALANIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI 124
Query: 483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEERNL 541
+ G+ LV LL + +K+A AL N++ +AI DAG V L+ LL +
Sbjct: 125 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 542 GMVDEALSILLLLATHP 558
+ EA L +A+ P
Sbjct: 185 EVQKEAARALANIASGP 201
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 19/133 (14%)
Query: 317 QTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVS---------- 366
+ LA+++ P+ A+K ++ + KL DSE + A I S
Sbjct: 108 RALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 167
Query: 367 -------LVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDS 418
LV+ L+S+ EVQKEA R + ++ P + I I D G + L +LL DS
Sbjct: 168 DAGGVEVLVKLLTSTDSEVQKEAARALANIAS-GPTSAIKAIVDAGGVEVLQKLLTSTDS 226
Query: 419 KILEHAVTAVLNL 431
++ + A A+ N+
Sbjct: 227 EVQKEAQRALENI 239
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
E+ +V+QL+S + + A+RK+ ++ E + D GA+P LVQLL P+ +IL+
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 423 HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKIT 481
A+ A+ N++ + + + + GA+PA++++L S + + + + AL +++ +I
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 482 IGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEER 539
+ G +P LV LL + + ++A+ AL N++ + +A+ +AG + L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192
Query: 540 NLGMVDEALSILLLLATH 557
N + EA L L +H
Sbjct: 193 NEKIQKEAQEALEKLQSH 210
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 105/198 (53%), Gaps = 3/198 (1%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
E+ +V+QL+S + + A+RK+ ++ E + D GA+P LVQLL P+ +IL+
Sbjct: 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 423 HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKIT 481
A+ A+ N++ + + + + GA+PA++++L S + + + + AL +++ +I
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 482 IGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEER 539
+ G +P LV LL + + ++A+ AL N++ + +A+ +AG L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSP 192
Query: 540 NLGMVDEALSILLLLATH 557
N + EA L + +H
Sbjct: 193 NEKIQKEAQEALEKIQSH 210
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 11/216 (5%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L EV + I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 187 TLVRLLHHDDPEVLADTCWAISYLT-DGPNERIGMVVKTGVVPQLVKLLGASELPIVTPA 245
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE + +I GA+ +L + T ++ + + +++ +++I
Sbjct: 246 LRAIGNIVTGTDEQTQVVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+AV A+ N + + + GI+ PLMNLL +
Sbjct: 305 VVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAK 364
Query: 540 NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVE 575
+ ++ L IL ++ + K+G+ + ++E
Sbjct: 365 DTKII---LVILDAISNIFQAAEKLGETEKLSIMIE 397
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GA+ PL+
Sbjct: 83 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAVDPLL 142
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN + A + +P ++ +L E
Sbjct: 143 ALLAVPDMSSL--ACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPEVL 200
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
++ A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 201 ADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNIVTGTDEQT 260
Query: 522 R-AIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 261 QVVIDAGALAVFPSLLTNPKTNIQKEA 287
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 181 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 239
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 240 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 298
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 299 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 358
Query: 540 NLGMV 544
+ ++
Sbjct: 359 DTKII 363
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 77 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 136
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 137 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 194
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 195 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 254
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 255 QKVIDAGALAVFPSLLTNPKTNIQKEA 281
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 308 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 367
Query: 426 TAVLNL 431
A+ N+
Sbjct: 368 DAISNI 373
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 245 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Query: 540 NLGMV 544
+ ++
Sbjct: 364 DTKII 368
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 82 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 141
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 142 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 199
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 200 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 259
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 260 QKVIDAGALAVFPSLLTNPKTNIQKEA 286
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 313 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 372
Query: 426 TAVLNL 431
A+ N+
Sbjct: 373 DAISNI 378
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 181 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 239
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 240 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 298
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 299 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 358
Query: 540 NLGMV 544
+ ++
Sbjct: 359 DTKII 363
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 77 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 136
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 137 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 194
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 195 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 254
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 255 QKVIDAGALAVFPSLLTNPKTNIQKEA 281
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 308 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 367
Query: 426 TAVLNL 431
A+ N+
Sbjct: 368 DAISNI 373
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 220 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 278
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 279 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 337
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 338 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 397
Query: 540 NLGMV 544
+ ++
Sbjct: 398 DTKII 402
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 116 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 175
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 176 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 233
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 234 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 293
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 294 QKVIDAGALAVFPSLLTNPKTNIQKEA 320
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 347 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 406
Query: 426 TAVLNL 431
A+ N+
Sbjct: 407 DAISNI 412
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 185 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 243
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 244 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 362
Query: 540 NLGMV 544
+ ++
Sbjct: 363 DTKII 367
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 81 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 140
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 141 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 198
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 199 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 258
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 259 QKVIDAGALAVFPSLLTNPKTNIQKEA 285
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 312 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 371
Query: 426 TAVLNL 431
A+ N+
Sbjct: 372 DAISNI 377
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 222 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 280
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 281 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 339
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 340 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 399
Query: 540 NLGMV 544
+ ++
Sbjct: 400 DTKII 404
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 118 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 177
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 178 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 235
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 236 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 295
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 296 QKVIDAGALAVFPSLLTNPKTNIQKEA 322
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 349 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 408
Query: 426 TAVLNL 431
A+ N+
Sbjct: 409 DAISNI 414
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 245 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Query: 540 NLGMV 544
+ ++
Sbjct: 364 DTKII 368
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 82 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 141
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 142 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 199
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 200 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 259
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 260 QKVIDAGALAVFPSLLTNPKTNIQKEA 286
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 313 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 372
Query: 426 TAVLNL 431
A+ N+
Sbjct: 373 DAISNI 378
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 245 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Query: 540 NLGMV 544
+ ++
Sbjct: 364 DTKII 368
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 82 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 141
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 142 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 199
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 200 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 259
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 260 QKVIDAGALAVFPSLLTNPKTNIQKEA 286
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 313 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 372
Query: 426 TAVLNL 431
A+ N+
Sbjct: 373 DAISNI 378
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 192 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 251 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 310 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 369
Query: 540 NLGMV 544
+ ++
Sbjct: 370 DTKII 374
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 88 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 147
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 148 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 205
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 206 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 265
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 266 QKVIDAGALAVFPSLLTNPKTNIQKEA 292
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 319 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 378
Query: 426 TAVLNL 431
A+ N+
Sbjct: 379 DAISNI 384
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 185 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 243
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 244 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 362
Query: 540 NLGMV 544
+ ++
Sbjct: 363 DTKII 367
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 81 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 140
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 141 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 198
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 199 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 258
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 259 QKVIDAGALAVFPSLLTNPKTNIQKEA 285
Score = 35.8 bits (81), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 312 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 371
Query: 426 TAVLNL 431
A+ N+
Sbjct: 372 DAISNI 377
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 212 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 270
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 271 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 329
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 330 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 389
Query: 540 NLGMV 544
+ ++
Sbjct: 390 DTKII 394
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 108 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 167
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 168 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 225
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 226 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 285
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 286 QKVIDAGALAVFPSLLTNPKTNIQKEA 312
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 339 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 398
Query: 426 TAVLNL 431
A+ N+
Sbjct: 399 DAISNI 404
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 295 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Query: 540 NLGMV 544
+ ++
Sbjct: 414 DTKII 418
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 192 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 309
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 310 QKVIDAGALAVFPSLLTNPKTNIQKEA 336
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422
Query: 426 TAVLNL 431
A+ N+
Sbjct: 423 DAISNI 428
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 295 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Query: 540 NLGMV 544
+ ++
Sbjct: 414 DTKII 418
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 192 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 309
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 310 QKVIDAGALAVFPSLLTNPKTNIQKEA 336
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422
Query: 426 TAVLNL 431
A+ N+
Sbjct: 423 DAISNI 428
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 295 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K+A A+ N + + + GI+ PLMNLL +
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Query: 540 NLGMV 544
+ ++
Sbjct: 414 DTKII 418
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ + R L+ GAI PL+
Sbjct: 132 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLL 191
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 192 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 309
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 310 QKVIDAGALAVFPSLLTNPKTNIQKEA 336
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QKEA I S E + + CG I PL+ LL D+KI++ +
Sbjct: 363 LVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422
Query: 426 TAVLNL 431
A+ N+
Sbjct: 423 DAISNI 428
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
+L + S+ EV +A + LS + + + G P LV+LL +P +L A+
Sbjct: 210 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 269
Query: 426 TAVLNL-SIDESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIG 483
V N+ + D++ + I A+P ++ +L Q+ ++ + + +++ ++++I
Sbjct: 270 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 329
Query: 484 LSDGI-PPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLL 536
++ GI PLV+LLQ KK+A A+ N + ++ + G + PL +LL
Sbjct: 330 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 46/227 (20%)
Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDSKILEHAV 425
V+ L SS +V+++AV + ++ ++P+ R L+ GA+ PL+ QL + +L +A
Sbjct: 127 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 186
Query: 426 TAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLS 485
+ N + + A+PA+ ++ S E ++ AL LS +KI +
Sbjct: 187 WTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 246
Query: 486 DGIPP-LVDLL-------------------------------------------QNGTIR 501
G+ P LV+LL QN
Sbjct: 247 AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS 306
Query: 502 GKKDAVTALFNLSLNQANKARA-IDAGIVLPLMNLLEERNLGMVDEA 547
KK+A + N++ ++ +A I+AGI+ PL+NLL+ + EA
Sbjct: 307 IKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 353
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 349 DDSETSECTAEQKE--EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAI 406
DD++T +C + + ++SL+ Q + K ++KEA I ++ N + + + G I
Sbjct: 279 DDAQT-QCIIDHQALPCLLSLLTQ--NLKKSIKKEACWTISNITAGNKDQIQAVINAGII 335
Query: 407 PPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL--IAQQGAIPAIIEIL 454
PLV LL + I + A A+ N + S+ ++ + +G I + ++L
Sbjct: 336 GPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
+LV L + EV ++ I L+ + P RI ++ G +P LV+LL + I+ A
Sbjct: 255 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
+ A+ N+ DE +++I GA+ +L + T ++ + + +++ +++I
Sbjct: 314 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
++ G +P LV +L + +K A A+ N + + + GI+ PLMNLL +
Sbjct: 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432
Query: 540 NLGMV 544
+ ++
Sbjct: 433 DTKII 437
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 88/207 (42%), Gaps = 18/207 (8%)
Query: 357 TAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
T+EQ + +V + + L+S + ++AV + ++ R L+ GAI PL+
Sbjct: 151 TSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLL 210
Query: 411 QLLPYPDSKILEHAVTAVLNLSIDESN--------KRLIAQQGAIPAIIEILQSGSTEAR 462
LL PD L A + NL+ SN L A + +P ++ +L E
Sbjct: 211 ALLAVPDLSTL--ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 268
Query: 463 ENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
+S A+ L+ +I + + G +P LV LL + A+ A+ N+ +
Sbjct: 269 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQT 328
Query: 522 -RAIDAGIVLPLMNLLEERNLGMVDEA 547
+ IDAG + +LL + EA
Sbjct: 329 QKVIDAGALAVFPSLLTNPKTNIQKEA 355
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 367 LVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LV LS + + QK A I S E + + CG I PL+ LL D+KI++ +
Sbjct: 382 LVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 441
Query: 426 TAVLNL 431
A+ N+
Sbjct: 442 DAISNI 447
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
+L + S+ EV +A + LS + + + G P LV+LL +P +L A+
Sbjct: 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307
Query: 426 TAVLNL-SIDESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIG 483
V N+ + D++ + I A+P ++ +L Q+ ++ + + +++ ++++I
Sbjct: 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367
Query: 484 LSDGI-PPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLL 536
++ GI PLV+LLQ KK+A A+ N + ++ + G + PL +LL
Sbjct: 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 46/227 (20%)
Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDSKILEHAV 425
V+ L SS +V+++AV + ++ ++P+ R L+ GA+ PL+ QL + +L +A
Sbjct: 165 FVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 224
Query: 426 TAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLS 485
+ N + + A+PA+ ++ S E ++ AL LS +KI +
Sbjct: 225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE 284
Query: 486 DGI-PPLVDLL-------------------------------------------QNGTIR 501
G+ P LV+LL QN
Sbjct: 285 AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKS 344
Query: 502 GKKDAVTALFNLSLNQANKARA-IDAGIVLPLMNLLEERNLGMVDEA 547
KK+A + N++ ++ +A I+AGI+ PL+NLL+ + EA
Sbjct: 345 IKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA 391
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 339 EKNNFKLPK----KDDSETSECTAEQK------EEIVSLVEQLSSSKLEVQKEAVRKIR- 387
++ NF P D+ + S +A+Q+ +E+ + +QL+S ++ Q A K R
Sbjct: 54 KRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQ 113
Query: 388 LLSKENPENRILIADCGAIPPLVQLLPYPDSKILE-HAVTAVLNLSIDESNK-RLIAQQG 445
+LS+E+ ++ G +P LV+ + ++L+ A A+ N++ S + +++
Sbjct: 114 ILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD 173
Query: 446 AIPAIIEILQSGSTEARENSAAALFSLS 473
A+P I++L +GS E +E + AL +++
Sbjct: 174 AVPLFIQLLYTGSVEVKEQAIWALGNVA 201
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
LSS K ++KEA I ++ N E + D IPPLV+LL + K + A A+ N
Sbjct: 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
S + R + QG I + ++L+ E + AL EN + +G +D
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 462
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
+++ +N K + +FN N+ +K
Sbjct: 463 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 496
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 271 IPHEFLC-PITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
IP ++LC I+ E+MR+P I SG T++R+ +++ P TR L + PN A
Sbjct: 103 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 161
Query: 330 LKNLILQWCEKNNF 343
+K +I + ++N +
Sbjct: 162 MKEVIDAFIQENGW 175
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 367 LVEQLSSSKLEVQKEAVRKIR-LLSKE-NPENRILIADCGAIPPLVQLLPYPDSKILEHA 424
++E + S E Q A +K R LLSKE NP +I+ G + V+ L ++ L+
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 425 VTAVL-NLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL----SMLDEN 478
VL N++ S R++ Q GA+P IE+L S + +E + AL ++ +M +
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 479 KITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL 536
+ + +PPL+ L + + ++AV AL NL K+ + V P +N+L
Sbjct: 145 VLDCNI---LPPLLQLFSKQNRLTMTRNAVWALSNLC---RGKSPPPEFAKVSPCLNVL 197
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS-KILEHAV 425
+E LSS +VQ++AV + ++ ++ R + DC +PPL+QL + + +AV
Sbjct: 112 FIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171
Query: 426 TAVLNLSIDESNKRLIAQQGAIPAIIE-ILQSGSTEARENSAAALFSLSMLDENKITIGL 484
A+ NL +S A+ ++ +L T+ ++ AL LS +KI +
Sbjct: 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 231
Query: 485 SDGIP-PLVDLLQNGTIRGKKDAVTALFNL 513
G+ LV+LL + + A+ A+ N+
Sbjct: 232 DAGVCRRLVELLMHNDYKVVSPALRAVGNI 261
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 367 LVEQLSSSKLEVQKEAVRKIR-LLSKE-NPENRILIADCGAIPPLVQLLPYPDSKILEHA 424
++E + S E Q A +K R LLSKE NP +I+ G + V+ L ++ L+
Sbjct: 22 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 425 VTAVL-NLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL----SMLDEN 478
VL N++ S R++ Q GA+P IE+L S + +E + AL ++ +M +
Sbjct: 82 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 479 KITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL 536
+ + +PPL+ L + + ++AV AL NL K+ + V P +N+L
Sbjct: 142 VLDCNI---LPPLLQLFSKQNRLTMTRNAVWALSNLC---RGKSPPPEFAKVSPCLNVL 194
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS-KILEHAV 425
+E LSS +VQ++AV + ++ ++ R + DC +PPL+QL + + +AV
Sbjct: 109 FIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 168
Query: 426 TAVLNLSIDESNKRLIAQQGAIPAIIE-ILQSGSTEARENSAAALFSLSMLDENKITIGL 484
A+ NL +S A+ ++ +L T+ ++ AL LS +KI +
Sbjct: 169 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVI 228
Query: 485 SDGIP-PLVDLLQNGTIRGKKDAVTALFNL 513
G+ LV+LL + + A+ A+ N+
Sbjct: 229 DAGVCRRLVELLMHNDYKVVSPALRAVGNI 258
>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
pdb|3IFQ|B Chain B, Interction Of Plakoglobin And Beta-Catenin With Desmosomal
Cadherins
Length = 553
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 29/221 (13%)
Query: 372 SSSKLEVQKEAVRKIRLLSKENPENRIL---IADCGAIPPLVQLLPYPDSKILEHAVTAV 428
+ K ++ + AV +R L+ +PE + + IP +V+LL P+ L A +
Sbjct: 322 AGDKDDITEPAVCALRHLTSRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGL 381
Query: 429 L-NLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAA-------------------- 467
+ NL++ +N + + IP ++++L +A+ + AA
Sbjct: 382 IRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCT 441
Query: 468 -ALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDA 526
AL L+ N++ I + IP V LL + ++ A L L+ ++ A AIDA
Sbjct: 442 GALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDA 500
Query: 527 -GIVLPLMNLLEERNLGMVDEALSILLLLA--THPEGRHKI 564
G PLM LL RN G A ++L ++ +P+ R ++
Sbjct: 501 EGASAPLMELLHSRNEGTATYAAAVLFRISEDKNPDYRKRV 541
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + E K + + ++ +
Sbjct: 94 EGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPL 153
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIP-PLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ ++ I L++G P LV +++N + + +
Sbjct: 154 LNKNNPKFLAITTDCLQLLAYGNQESKLIILANGGPQALVQIMRNYSYEKLLWTTSRVLK 213
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + +V L L L AT EG S
Sbjct: 214 VLSVCPSNKPAIVEAGGMQALGKHLTSNSPRLVQNCLWTLRNLSDVATKQEGLE-----S 268
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNS 600
++ LV + CAT L L NNS
Sbjct: 269 VLKILVNQLSVDDVNVLTCATGTLSNLTCNNS 300
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 378 VQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVL-NLSIDES 436
V +A + LSK+ R L+ + +V+ + T++L NLS
Sbjct: 35 VVTKAAMIVNQLSKKEASRRALMGSPQLVAAVVRTMQNTSDLDTARCTTSILHNLSHHRE 94
Query: 437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN-KITIGLSDGIPPLVDLL 495
I + G IPA++ +L S + L +L + E K+ + L+DG+ +V LL
Sbjct: 95 GLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAKMAVRLADGLQKMVPLL 154
>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 78
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 274 EFLC-PITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKN 332
++LC I+ E+MR+P I SG T++R+ +++ P TR L + PN A+K
Sbjct: 4 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 63
Query: 333 LILQWCEKNNF 343
+I + +N +
Sbjct: 64 VIDAFISENGW 74
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
LSS K ++KEA I ++ N E + D IPPLV+LL + K + A A+ N
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
S + R + QG I + ++L+ E + AL EN I +G +D
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENIIKMGEAD 374
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
+++ +N K + +FN N+ +K
Sbjct: 375 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 408
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 367 LVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLLPYPDSKILE-HA 424
+ +QL+S ++ Q A K R +LS+E+ ++ G +P LV+ + ++L+ A
Sbjct: 4 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 63
Query: 425 VTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
A+ N++ S + +++ A+P I++L +GS E +E + AL +++
Sbjct: 64 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 113
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 271 IPHEFLC-PITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
IP ++LC I+ E+MR+P I SG T++R+ +++ P TR L + PN A
Sbjct: 205 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 263
Query: 330 LKNLILQWCEKNNF 343
+K +I + +N +
Sbjct: 264 MKEVIDAFISENGW 277
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
LSS K ++KEA I ++ N E + D IPPLV+LL + K + A A+ N
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
S + R + QG I + ++L+ E + AL EN + +G +D
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 376
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
+++ +N K + +FN N+ +K
Sbjct: 377 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 410
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 362 EEIVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLLPYPDSKI 420
+E+ + +QL+S ++ Q A K R +LS+E+ ++ G +P LV+ + ++
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 421 LE-HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
L+ A A+ N++ S + +++ A+P I++L +GS E +E + AL +++
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 115
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 11/272 (4%)
Query: 367 LVEQLSSSKLEV-QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LVE + ++ E+ Q EA + ++ ++ D A+P +QLL ++ E A+
Sbjct: 49 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 108
Query: 426 TAVLNLSIDESNKR-LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG- 483
A+ N++ D ++ R + Q A+ I+ + S + L +L + +
Sbjct: 109 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV 168
Query: 484 LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA-IDAGIVLPLMNLLEERNLG 542
+S +P L L+ + DA A+ LS +A ID I L+ LL +
Sbjct: 169 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 228
Query: 543 MVDEALSILLLLATHPEGRHKI----GQLSFIETLVEYIREGTPKNKECATAVLLELGAN 598
+ AL + + T + + ++ G L + L+ +E K + C T + + A
Sbjct: 229 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI-KKEACWT--ISNITAG 285
Query: 599 NSSFILAALQYGVYEHLIQLTEGGTSRAQRKA 630
N+ I A + + L++L E + +++A
Sbjct: 286 NTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
LSS K ++KEA I ++ N E + D IPPLV+LL + K + A A+ N
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
S + R + QG I + ++L+ E + AL EN + +G +D
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 375
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
+++ +N K + +FN N+ +K
Sbjct: 376 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 409
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLLPYPDSKIL 421
E+ + +QL+S ++ Q A K R +LS+E+ ++ G +P LV+ + ++L
Sbjct: 1 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEML 60
Query: 422 E-HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
+ A A+ N++ S + +++ A+P I++L +GS E +E + AL +++
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 114
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
LSS K ++KEA I ++ N E + D IPPLV+LL + K + A A+ N
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
S + R + QG I + ++L+ E + AL EN + +G +D
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 375
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
+++ +N K + +FN N+ +K
Sbjct: 376 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 409
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLLPYPDSKIL 421
E+ + +QL+S ++ Q A K R +LS+E+ ++ G +P LV+ + ++L
Sbjct: 1 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEML 60
Query: 422 E-HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
+ A A+ N++ S + +++ A+P I++L +GS E +E + AL +++
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 114
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
LSS K ++KEA I ++ N E + D IPPLV+LL + K + A A+ N
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
S + R + QG I + ++L+ E + AL EN + +G +D
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 376
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
+++ +N K + +FN N+ +K
Sbjct: 377 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 410
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 362 EEIVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLLPYPDSKI 420
+E+ + +QL+S ++ Q A K R +LS+E+ ++ G +P LV+ + ++
Sbjct: 1 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 60
Query: 421 LE-HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
L+ A A+ N++ S + +++ A+P I++L +GS E +E + AL +++
Sbjct: 61 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 115
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 116/272 (42%), Gaps = 11/272 (4%)
Query: 367 LVEQLSSSKLEV-QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
LVE + ++ E+ Q EA + ++ ++ D A+P +QLL ++ E A+
Sbjct: 49 LVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAI 108
Query: 426 TAVLNLSIDESNKR-LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG- 483
A+ N++ D ++ R + Q A+ I+ + S + L +L + +
Sbjct: 109 WALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSV 168
Query: 484 LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA-IDAGIVLPLMNLLEERNLG 542
+S +P L L+ + DA A+ LS +A ID I L+ LL +
Sbjct: 169 VSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTL 228
Query: 543 MVDEALSILLLLATHPEGRHKI----GQLSFIETLVEYIREGTPKNKECATAVLLELGAN 598
+ AL + + T + + ++ G L + L+ +E K + C T + + A
Sbjct: 229 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENI-KKEACWT--ISNITAG 285
Query: 599 NSSFILAALQYGVYEHLIQLTEGGTSRAQRKA 630
N+ I A + + L++L E + +++A
Sbjct: 286 NTEQIQAVIDANLIPPLVKLLEVAEDKTKKEA 317
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
LSS K ++KEA I ++ N E + D IPPLV+LL + K + A A+ N
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
S + R + QG I + ++L+ E + AL EN + +G +D
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 374
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
+++ +N K + +FN N+ +K
Sbjct: 375 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 408
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 61/110 (55%), Gaps = 3/110 (2%)
Query: 367 LVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLLPYPDSKILE-HA 424
+ +QL+S ++ Q A K R +LS+E+ ++ G +P LV+ + ++L+ A
Sbjct: 4 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 63
Query: 425 VTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
A+ N++ S + +++ A+P I++L +GS E +E + AL +++
Sbjct: 64 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA 113
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/349 (23%), Positives = 143/349 (40%), Gaps = 49/349 (14%)
Query: 305 FDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEI 364
FDS H P Q LA S +A+ NLI +++ +L + E ++ ++ + +
Sbjct: 113 FDSAH---PTNVQRLAEPSQMLKHAVVNLI---NYQDDAELATRAIPELTKLLNDEDQVV 166
Query: 365 VS----LVEQLSSSKLEVQKEAVRK--------IRLLSKENP------------------ 394
V+ +V QLS K E + A+ + +R + N
Sbjct: 167 VNKAAVMVHQLS--KKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR 224
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV +L P +L HA+T + NL + + ++ + G + ++ +
Sbjct: 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 284
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 285 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 344
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 345 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 399
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 489 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 548
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 549 RTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIEN 608
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA 555
++ A L L+ ++ G PL LL RN G+ A ++L ++
Sbjct: 609 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 662
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 584 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 643
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 644 HSRNEGVATYAAAVLFRMS 662
>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
Length = 80
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 274 EFLC-PITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKN 332
++LC I+ E+M +P I SG T++R+ +++ P TR L + PN A+K
Sbjct: 12 DYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKE 71
Query: 333 LILQWCEKN 341
+I + ++N
Sbjct: 72 VIDAFIQEN 80
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 264
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 265 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 313
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 354 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 413
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 414 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 473
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 474 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 524
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 449 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 508
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 509 HSRNEGVATYAAAVLFRMS 527
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 93 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 152
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 153 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 212
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 213 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 267
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 268 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 316
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 357 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 416
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 417 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 476
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 477 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 527
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 452 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 511
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 512 HSRNEGVATYAAAVLFRMS 530
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 251
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 252 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 300
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 341 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 400
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 401 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 460
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 461 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 511
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 436 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 495
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 496 HSRNEGVATYAAAVLFRMS 514
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 77 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 136
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 137 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 196
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 197 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 251
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 252 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 300
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 341 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 400
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 401 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 460
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 461 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 511
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 436 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 495
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 496 HSRNEGVATYAAAVLFRMS 514
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 96 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 155
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 156 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 215
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 216 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 270
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 271 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 319
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 360 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 419
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 420 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 479
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 480 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 530
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 455 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 514
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 515 HSRNEGVATYAAAVLFRMS 533
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 90 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 149
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 150 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 209
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 210 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 264
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 265 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 313
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 354 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 413
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 414 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 473
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 474 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 524
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 449 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 508
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 509 HSRNEGVATYAAAVLFRMS 527
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 81 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 140
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 141 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 200
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 201 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 255
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 256 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 304
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 345 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 404
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 405 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 464
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 465 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 515
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 440 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 499
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 500 HSRNEGVATYAAAVLFRMS 518
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 95 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 154
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 155 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 214
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 215 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 269
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 270 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 318
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 359 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 418
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 419 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 478
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 479 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 529
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 454 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 513
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 514 HSRNEGVATYAAAVLFRMS 532
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 94 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 268
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 269 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 317
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 358 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 417
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 418 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 477
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 478 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 528
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 453 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 512
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 513 HSRNEGVATYAAAVLFRMS 531
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 94 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 153
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 154 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 213
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 214 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 268
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 269 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 317
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 358 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 417
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 418 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 477
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 478 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 528
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 453 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 512
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 513 HSRNEGVATYAAAVLFRMS 531
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 79 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 138
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 139 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 198
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 199 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 253
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 254 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 302
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 343 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 402
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 403 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 462
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 463 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 513
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 438 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 497
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 498 HSRNEGVATYAAAVLFRMS 516
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 151
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 152 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 266
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 315
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 356 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 415
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 416 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 475
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 526
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 451 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 510
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 511 HSRNEGVATYAAAVLFRMS 529
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 99/229 (43%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPAIIEI 453
E + I G IP LV++L P +L +A+T + NL + + ++ + G + ++ +
Sbjct: 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL 148
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++++ T + +
Sbjct: 149 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG + L L + + +V L L L AT EG
Sbjct: 209 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME-----G 263
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN + Q G E L++
Sbjct: 264 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 23/174 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 353 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 412
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 413 RTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 472
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA 555
++ A L L+ ++ G PL LL RN G+ A ++L ++
Sbjct: 473 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 526
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 36/79 (45%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
NRI+I IP VQLL P I A + L+ D+ I +GA + E+L
Sbjct: 448 HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELL 507
Query: 455 QSGSTEARENSAAALFSLS 473
S + +AA LF +S
Sbjct: 508 HSRNEGVATYAAAVLFRMS 526
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRT-----CPKTRQTLAHLSI 324
+I E CPI LE++++PV +F R + ++SN T CP R ++
Sbjct: 15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74
Query: 325 APNYALKNLI 334
PN + N++
Sbjct: 75 KPNLHVANIV 84
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
+P EFL P+ IM+DPVI+ AS +R +++ S+ T P R L + PN
Sbjct: 902 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPNEE 960
Query: 330 LKNLILQWCEKNNFKLPKKDDSE 352
L+ IL C FK KK++++
Sbjct: 961 LRQKIL--C----FKKQKKEEAK 977
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
+P EFL P+ IM+DPVI+ AS +R +++ S+ T P R L + PN
Sbjct: 888 VPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD-STDPFNRMPLKLEDVTPNEE 946
Query: 330 LKNLILQWCEKNNFKLPKKDDSE 352
L+ IL C FK KK++++
Sbjct: 947 LRQKIL--C----FKKQKKEEAK 963
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 23/171 (13%)
Query: 405 AIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL--------- 454
+P +V+LL P +++ V + NL++ +N + +QGAIP ++++L
Sbjct: 298 GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQR 357
Query: 455 --QSGSTEAR-----------ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
G T+ + E AL L+ N+I I + IP V LL +
Sbjct: 358 RTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN 417
Query: 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
++ A L L+ ++ G PL LL RN G+ A ++L
Sbjct: 418 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 468
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 11/229 (4%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEI 453
E + I G IP LV+ L P +L +A+T + NL + E K + G + + +
Sbjct: 34 EGLLAIFKSGGIPALVKXLGSPVDSVLFYAITTLHNLLLHQEGAKXAVRLAGGLQKXVAL 93
Query: 454 LQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
L + + + L L+ + E+K+ I S G LV++ + T + +
Sbjct: 94 LNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIXRTYTYEKLLWTTSRVLK 153
Query: 513 -LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL---ATHPEGRHKIGQLS 568
LS+ +NK ++AG L L + + +V L L L AT EG
Sbjct: 154 VLSVCSSNKPAIVEAGGXQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGXE-----G 208
Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
+ TLV+ + CA +L L NN Q G E L++
Sbjct: 209 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKXXVCQVGGIEALVR 257
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQK-WFDSNHRTCPKTRQTLAHLSIAPNY 328
IP E LC I +IM D V+I G ++ E ++ +S+ TCP Q ++P+
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN----DVSPDA 65
Query: 329 ALKNLILQWCEKNNFK 344
+ N L+ NNFK
Sbjct: 66 LIANKFLRQ-AVNNFK 80
>pdb|1WGM|A Chain A, Solution Structure Of The U-Box In Human Ubiquitin
Conjugation Factor E4a
Length = 98
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 274 EFLCPITLEIMRDPVIIASGQ-TFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKN 332
EFL PI +M DPV++ S + T +R ++ + S+ T P R L I PN LK
Sbjct: 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTELKE 80
Query: 333 LILQW 337
I +W
Sbjct: 81 KIQRW 85
>pdb|3NOW|A Chain A, Unc-45 From Drosophila Melanogaster
Length = 810
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 88/184 (47%), Gaps = 17/184 (9%)
Query: 406 IPPLVQLLPYPDSKI-LEHAVTAVLNLSIDESNKRL--IAQQGAIPAIIEILQSGSTEAR 462
+P +++L + I EH + +D NKR+ +A +G A+ + ++ S ++
Sbjct: 458 LPEMIELAKFAKQHIPEEHELD-----DVDFINKRITVLANEGITTALCALAKTESHNSQ 512
Query: 463 ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-----Q 517
E A L ++ L E + + G+ L+ + GT +GK+ A AL + +
Sbjct: 513 ELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVS 572
Query: 518 ANKARAIDAGIVLPLMNLLEERNLGMVD-EALSILLLLATHPEG-RHKIGQLSFIETLVE 575
+ R++D ++ PL+NLL++ + + E+L L LA+ E R +I + + +
Sbjct: 573 FSGQRSLD--VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEY 630
Query: 576 YIRE 579
Y+ E
Sbjct: 631 YLME 634
>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
Ligase
pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 100
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALK 331
P EF P+ +M DPV + SG +R + + N T P RQTL + P LK
Sbjct: 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPVPELK 85
Query: 332 NLILQWC-EKNN 342
I W EK N
Sbjct: 86 EQIQAWMREKQN 97
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
+P EFL P+ I +DPVI+ AS +R +++ S+ T P R L + PN
Sbjct: 902 VPDEFLDPLXYTIXKDPVILPASKXNIDRSTIKAHLLSD-STDPFNRXPLKLEDVTPNEE 960
Query: 330 LKNLILQWCEKNNFKLPKKDDSE 352
L+ IL C FK KK++++
Sbjct: 961 LRQKIL--C----FKKQKKEEAK 977
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 13/70 (18%)
Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHR---------TCPKTRQTLAHLSI 324
E CPI LE++ P+ + G +F Q +NH+ +CP R + +I
Sbjct: 19 EVTCPICLELLTQPLSLDCGHSF----CQACLTANHKKSMLDKGESSCPVCRISYQPENI 74
Query: 325 APNYALKNLI 334
PN + N++
Sbjct: 75 RPNRHVANIV 84
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCP 313
E C + LE +++PVII G F + + +W++ R P
Sbjct: 15 EASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFP 54
>pdb|3L6X|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-Cadherin
pdb|3L6Y|A Chain A, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|C Chain C, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
pdb|3L6Y|E Chain E, Crystal Structure Of P120 Catenin In Complex With
E-cadherin
Length = 584
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 446 AIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQNGTIRGK 503
IP ++ +L E + AL ++S +NKI I DG+P LV LL+
Sbjct: 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDL 150
Query: 504 KDAVTA-LFNLSLNQANKARAIDAGI 528
+ +T L+NLS + + K +D +
Sbjct: 151 TEVITGTLWNLSSHDSIKMEIVDHAL 176
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 3/108 (2%)
Query: 378 VQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI--DE 435
V+ A ++ L N + + + IP LV LL +P ++ A A+ N+S D+
Sbjct: 64 VKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ 123
Query: 436 SNKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITI 482
NK I +PA++ +L+ + E L++LS D K+ I
Sbjct: 124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI 171
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEAREN 464
A+ + LL ++++ A A+ NL++D NK LI + AIP +++ L G + N
Sbjct: 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKH-AIPNLVKNLPGGQQNSSWN 414
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQK-WFDSNHRTCPKTRQ 317
IP E LC I +IM D V+I G ++ E ++ +S+ TCP Q
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60
>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
Length = 85
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALK 331
P EF P+ +M DPV + SG +R + + N T P RQ L + P LK
Sbjct: 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPVPELK 70
Query: 332 NLILQW 337
I W
Sbjct: 71 EQIQAW 76
>pdb|2CLY|B Chain B, Subcomplex Of The Stator Of Bovine Mitochondrial Atp
Synthase
pdb|2CLY|E Chain E, Subcomplex Of The Stator Of Bovine Mitochondrial Atp
Synthase
Length = 160
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 341 NNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILI 400
N K+P +D T++ AE+KE++ S E L+ SK +Q E +++ + P +++ I
Sbjct: 74 NALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQ-EYEKELEKMRNIIPFDQMTI 132
Query: 401 ADCGAIPPLVQL----LPY 415
D + P +L PY
Sbjct: 133 EDLNEVFPETKLDKKKYPY 151
>pdb|3RN9|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sL272E DOUBLE MUTANT
Length = 498
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K +++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVETGPIMDYYTPLESRN 287
>pdb|2WSS|U Chain U, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
Length = 118
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 341 NNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQ 379
N K+P +D T++ AE+KE++ S E L+ SK +Q
Sbjct: 74 NALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQ 112
>pdb|4B2Q|U Chain U, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|UU Chain u, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 120
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 341 NNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQ 379
N K+P +D T++ AE+KE++ S E L+ SK +Q
Sbjct: 71 NALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQ 109
>pdb|3SL9|A Chain A, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|B Chain B, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|E Chain E, X-Ray Structure Of Beta Catenin In Complex With Bcl9
pdb|3SL9|G Chain G, X-Ray Structure Of Beta Catenin In Complex With Bcl9
Length = 167
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAI 450
E + I G IP LV++L P +L +A+T + NL L+ Q+GA A+
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL--------LLHQEGAKMAV 135
>pdb|3SLA|A Chain A, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|B Chain B, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|C Chain C, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|D Chain D, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
pdb|3SLA|E Chain E, X-Ray Structure Of First Four Repeats Of Human
Beta-Catenin
Length = 168
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAI 450
E + I G IP LV++L P +L +A+T + NL L+ Q+GA A+
Sbjct: 88 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNL--------LLHQEGAKMAV 135
>pdb|3U1N|A Chain A, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|B Chain B, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|C Chain C, Structure Of The Catalytic Core Of Human Samhd1
pdb|3U1N|D Chain D, Structure Of The Catalytic Core Of Human Samhd1
Length = 528
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 328 YALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIR 387
YA + +QWC NF P+ D T ++KE S Q + E K V+
Sbjct: 465 YAARQYFVQWCADRNFTKPQDGDVIAPLITPQKKEWNDSTSVQNPTRLREASKSRVQ--- 521
Query: 388 LLSKENP 394
L K++P
Sbjct: 522 -LFKDDP 527
>pdb|2WAQ|F Chain F, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|F Chain F, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2WB1|U Chain U, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
pdb|2Y0S|F Chain F, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|2Y0S|U Chain U, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
pdb|4AYB|F Chain F, Rnap At 3.2ang
pdb|4B1O|F Chain F, Archaeal Rnap-Dna Binary Complex At 4.32ang
pdb|4B1P|U Chain U, Archaeal Rnap-Dna Binary Complex At 4.32ang
Length = 113
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 17/90 (18%)
Query: 224 RGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHE-------FL 276
+ SS +Q+ D LN ++ V+++ LS +I E +
Sbjct: 26 KSGSSSNLLQRTYDYLNSVEKCDAESAQKVVEE----------LSSIISREDVRAVLASI 75
Query: 277 CPITLEIMRDPVIIASGQTFERESVQKWFD 306
CPIT + +R +I+ S +T+ E +QK D
Sbjct: 76 CPITPDEVRSILIMDSNRTYTSEDIQKIID 105
>pdb|3QHE|A Chain A, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
pdb|3QHE|C Chain C, Crystal Structure Of The Complex Between The Armadillo
Repeat Domain Of Adenomatous Polyposis Coli And The
Tyrosine-Rich Domain Of Sam68
Length = 337
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 413 LPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ-----------SGSTEA 461
+P P + AV ++ LS DE ++ + + G + AI E+LQ S
Sbjct: 43 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 102
Query: 462 RENSAAALFSLSMLD-ENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLN-QA 518
R + AL +L+ D NK T+ G + LV L++ + ++ + L NLS
Sbjct: 103 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 162
Query: 519 NKARAI-DAGIVLPLMNL-LEERNLGMVDEALSILLLLATH-PEGRHKI----GQLSFIE 571
N + + + G V LM LE + + LS L L+ H E + I G L+F+
Sbjct: 163 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 222
Query: 572 TLVEY 576
+ Y
Sbjct: 223 GTLTY 227
>pdb|2INC|A Chain A, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
pdb|2IND|A Chain A, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 491
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 207 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 259
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 260 AIWRSWKLFSVLTGPIMDYYTPLESRN 286
>pdb|3RNA|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|3RNG|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|2RDB|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
Length = 498
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|3RNB|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|3N1X|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
Length = 498
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|3RNC|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
Length = 498
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|2CSE|A Chain A, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|B Chain B, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|C Chain C, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|P Chain P, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|Q Chain Q, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|R Chain R, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|J Chain J, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|K Chain K, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|L Chain L, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|T Chain T, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 708
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 387 RLLSKENPENRILIAD--CGAIPPLVQLLPYPDSKIL---EHAV 425
R+ SK+ PE I+ D GA+P L+PY D ++ EHA+
Sbjct: 65 RMTSKDIPETAIINTDNSSGAVPSESALVPYNDEPLVVVTEHAI 108
>pdb|3N20|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
Length = 498
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|3N1Z|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
Length = 498
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|3N1Y|A Chain A, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
Length = 498
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|1T0Q|A Chain A, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|A Chain A, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|A Chain A, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
Length = 498
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513
L + + EA +++ A+L S DE++ G P L L++NG KKD + ++
Sbjct: 208 LAADAAEAGDHTFASLISSIQTDESRHA---QQGGPSLKILVENG----KKDEAQQMVDV 260
Query: 514 SLNQANKARAIDAGIVLPLMNLLEERN 540
++ ++ K ++ G ++ LE RN
Sbjct: 261 AIWRSWKLFSVLTGPIMDYYTPLESRN 287
>pdb|1JMU|B Chain B, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|D Chain D, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|F Chain F, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 666
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Query: 387 RLLSKENPENRILIAD--CGAIPPLVQLLPYPDSKIL---EHAV 425
R+ SK+ PE I+ D GA+P L+PY D ++ EHA+
Sbjct: 23 RMTSKDIPETAIINTDNSSGAVPSESALVPYNDEPLVVVTEHAI 66
>pdb|3T7U|A Chain A, A New Crytal Structure Of Apc-Arm
pdb|3T7U|B Chain B, A New Crytal Structure Of Apc-Arm
Length = 378
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 413 LPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ-----------SGSTEA 461
+P P + AV ++ LS DE ++ + + G + AI E+LQ S
Sbjct: 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 100
Query: 462 RENSAAALFSLSMLD-ENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLN-QA 518
R + AL +L+ D NK T+ G + LV L++ + ++ + L NLS
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 160
Query: 519 NKARAI-DAGIVLPLMNL-LEERNLGMVDEALSILLLLATH-PEGRHKI----GQLSFIE 571
N + + + G V LM LE + + LS L L+ H E + I G L+F+
Sbjct: 161 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 220
Query: 572 TLVEY 576
+ Y
Sbjct: 221 GTLTY 225
>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
Length = 344
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
+L++ L S L + A + LS NP+++ + D GA+ L L+ I +
Sbjct: 276 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSA 335
Query: 426 TAVLNL 431
A+ NL
Sbjct: 336 AALRNL 341
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 200 KKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIV 259
K++ +D +RNL+KE G + E + +D LNK Q G ++ D +
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-QAGGFGF--IISDWNM 59
Query: 260 PKMLG 264
P M G
Sbjct: 60 PNMDG 64
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 200 KKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIV 259
K++ +D +RNL+KE G + E + +D LNK Q G ++ D +
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-QAGGFGF--IISDWNM 60
Query: 260 PKMLG 264
P M G
Sbjct: 61 PNMDG 65
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 413 LPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ 455
+P P + AV ++ LS DE ++ + + G + AI E+LQ
Sbjct: 157 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQ 199
>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
Length = 354
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 21/185 (11%)
Query: 413 LPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ-----------SGSTEA 461
+P P + AV ++ LS DE ++ + + G + AI E+LQ S
Sbjct: 41 MPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL 100
Query: 462 RENSAAALFSLSMLD-ENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLN-QA 518
R + AL +L+ D NK T+ G + LV L++ + ++ + L NLS
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 160
Query: 519 NKARAI-DAGIVLPLMNL-LEERNLGMVDEALSILLLLATH-PEGRHKI----GQLSFIE 571
N + + + G V LM LE + + LS L L+ H E + I G L+F+
Sbjct: 161 NSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV 220
Query: 572 TLVEY 576
+ Y
Sbjct: 221 GTLTY 225
>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
Length = 354
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
+L++ L S L + A + LS NP+++ + D GA+ L L+ I +
Sbjct: 267 TLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDXGAVSXLKNLIHSKHKXIAXGSA 326
Query: 426 TAVLNLSIDESNK 438
A+ NL + K
Sbjct: 327 AALRNLXANRPAK 339
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,331,903
Number of Sequences: 62578
Number of extensions: 571720
Number of successful extensions: 2038
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1713
Number of HSP's gapped (non-prelim): 274
length of query: 643
length of database: 14,973,337
effective HSP length: 105
effective length of query: 538
effective length of database: 8,402,647
effective search space: 4520624086
effective search space used: 4520624086
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)