Query 040749
Match_columns 643
No_of_seqs 479 out of 3146
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:25:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 5.1E-28 1.1E-32 290.4 31.7 279 361-639 12-312 (2102)
2 PLN03200 cellulose synthase-in 100.0 7.9E-27 1.7E-31 280.2 30.5 281 360-641 444-766 (2102)
3 KOG4224 Armadillo repeat prote 99.9 8.4E-26 1.8E-30 224.3 19.5 276 362-638 126-404 (550)
4 KOG4224 Armadillo repeat prote 99.9 1.1E-25 2.5E-30 223.3 20.1 278 361-640 166-447 (550)
5 KOG0166 Karyopherin (importin) 99.9 3.3E-25 7.2E-30 235.1 24.3 277 362-638 109-392 (514)
6 KOG0166 Karyopherin (importin) 99.9 3.5E-23 7.7E-28 219.8 23.4 282 360-641 150-438 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 2E-22 4.4E-27 198.7 15.7 279 360-638 112-397 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 5.9E-22 1.3E-26 195.5 17.6 278 360-639 155-443 (526)
9 PF04564 U-box: U-box domain; 99.8 3.2E-20 6.8E-25 149.6 5.6 72 271-342 1-72 (73)
10 PF05804 KAP: Kinesin-associat 99.8 2.1E-17 4.5E-22 185.3 26.3 255 376-638 263-519 (708)
11 PF05804 KAP: Kinesin-associat 99.8 5.4E-17 1.2E-21 182.0 29.1 279 360-641 288-651 (708)
12 KOG1048 Neural adherens juncti 99.7 4.4E-16 9.6E-21 170.7 18.4 278 362-640 233-596 (717)
13 KOG4199 Uncharacterized conser 99.6 2E-13 4.4E-18 135.5 24.3 277 361-638 144-443 (461)
14 smart00504 Ubox Modified RING 99.6 1.1E-15 2.3E-20 120.1 5.5 63 274-337 1-63 (63)
15 KOG1048 Neural adherens juncti 99.6 5.5E-14 1.2E-18 154.5 20.5 282 360-643 273-688 (717)
16 KOG2122 Beta-catenin-binding p 99.6 2.7E-14 5.8E-19 162.2 17.0 261 380-641 316-603 (2195)
17 PF04826 Arm_2: Armadillo-like 99.6 2.3E-13 5E-18 136.3 21.7 193 360-557 10-206 (254)
18 KOG4199 Uncharacterized conser 99.6 8.7E-13 1.9E-17 131.1 23.4 264 372-639 117-403 (461)
19 PF04826 Arm_2: Armadillo-like 99.5 5.6E-13 1.2E-17 133.5 19.5 226 401-630 9-253 (254)
20 PF10508 Proteasom_PSMB: Prote 99.4 4.7E-11 1E-15 132.6 26.6 276 361-637 76-364 (503)
21 KOG2122 Beta-catenin-binding p 99.4 2E-12 4.4E-17 147.3 14.4 226 376-601 365-605 (2195)
22 KOG4500 Rho/Rac GTPase guanine 99.3 5.6E-10 1.2E-14 114.5 20.6 281 361-642 86-434 (604)
23 PF10508 Proteasom_PSMB: Prote 99.2 1.4E-09 3E-14 120.9 23.9 272 365-640 41-320 (503)
24 cd00020 ARM Armadillo/beta-cat 99.2 5.8E-10 1.3E-14 98.9 14.9 117 522-638 2-119 (120)
25 cd00020 ARM Armadillo/beta-cat 99.2 3.2E-10 6.9E-15 100.6 12.8 116 482-597 3-120 (120)
26 PRK09687 putative lyase; Provi 99.2 4.3E-09 9.4E-14 107.8 21.5 224 362-636 54-279 (280)
27 KOG4642 Chaperone-dependent E3 99.1 9.6E-10 2.1E-14 105.2 14.1 78 267-344 204-281 (284)
28 PF15227 zf-C3HC4_4: zinc fing 99.1 3.7E-11 8E-16 85.2 3.3 39 277-315 1-42 (42)
29 PRK09687 putative lyase; Provi 99.1 4.6E-09 9.9E-14 107.7 18.8 226 361-637 22-248 (280)
30 KOG1222 Kinesin associated pro 99.1 2.3E-08 5E-13 104.0 23.4 279 360-641 302-665 (791)
31 PLN03208 E3 ubiquitin-protein 99.1 6.6E-11 1.4E-15 110.8 4.2 60 269-328 13-87 (193)
32 KOG1222 Kinesin associated pro 99.1 1.6E-08 3.5E-13 105.1 20.9 240 378-626 279-520 (791)
33 cd00256 VATPase_H VATPase_H, r 99.0 3.7E-08 7.9E-13 105.2 22.8 274 364-637 103-423 (429)
34 KOG0168 Putative ubiquitin fus 99.0 1.4E-08 3E-13 112.0 19.0 257 361-621 166-437 (1051)
35 TIGR00599 rad18 DNA repair pro 99.0 3.8E-10 8.2E-15 118.6 6.1 70 269-339 21-90 (397)
36 PF03224 V-ATPase_H_N: V-ATPas 98.9 1.7E-08 3.6E-13 105.7 14.4 228 406-633 57-308 (312)
37 KOG4500 Rho/Rac GTPase guanine 98.9 1.3E-07 2.9E-12 97.4 19.3 260 381-640 155-476 (604)
38 PF03224 V-ATPase_H_N: V-ATPas 98.9 4.2E-08 9E-13 102.8 16.1 213 366-579 62-294 (312)
39 PRK13800 putative oxidoreducta 98.8 6.7E-07 1.5E-11 106.5 26.2 120 488-636 777-896 (897)
40 KOG0823 Predicted E3 ubiquitin 98.8 1.5E-09 3.3E-14 103.4 2.6 58 272-329 45-104 (230)
41 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.4E-09 5.1E-14 75.1 2.9 38 277-315 1-39 (39)
42 PRK13800 putative oxidoreducta 98.8 5.7E-07 1.2E-11 107.2 23.5 230 360-637 619-865 (897)
43 KOG0287 Postreplication repair 98.7 3.8E-09 8.2E-14 104.7 2.2 67 270-337 19-85 (442)
44 KOG0946 ER-Golgi vesicle-tethe 98.7 4.2E-06 9.1E-11 92.3 25.5 272 360-635 20-342 (970)
45 PF13445 zf-RING_UBOX: RING-ty 98.7 1E-08 2.2E-13 72.6 2.4 36 277-313 1-43 (43)
46 PF00097 zf-C3HC4: Zinc finger 98.6 2.7E-08 5.8E-13 70.6 3.2 39 277-315 1-41 (41)
47 KOG0317 Predicted E3 ubiquitin 98.6 2.7E-08 5.8E-13 97.7 3.5 54 271-325 236-289 (293)
48 PF14835 zf-RING_6: zf-RING of 98.6 1.8E-08 3.9E-13 76.2 1.6 58 274-334 7-65 (65)
49 KOG2160 Armadillo/beta-catenin 98.6 5.8E-06 1.3E-10 84.7 20.1 183 373-556 94-282 (342)
50 PHA02929 N1R/p28-like protein; 98.6 8.7E-08 1.9E-12 94.1 6.0 49 272-321 172-228 (238)
51 PF13920 zf-C3HC4_3: Zinc fing 98.5 5.2E-08 1.1E-12 72.4 3.1 47 273-320 1-48 (50)
52 PF01602 Adaptin_N: Adaptin N 98.5 2.8E-06 6E-11 95.7 17.9 254 362-639 114-369 (526)
53 KOG0320 Predicted E3 ubiquitin 98.5 4.2E-08 9.2E-13 89.4 2.3 53 273-326 130-184 (187)
54 KOG2759 Vacuolar H+-ATPase V1 98.5 1E-05 2.3E-10 83.9 18.9 271 364-637 116-436 (442)
55 KOG3678 SARM protein (with ste 98.5 6.8E-06 1.5E-10 85.6 17.1 263 361-639 179-452 (832)
56 COG5432 RAD18 RING-finger-cont 98.4 1.1E-07 2.4E-12 92.5 3.2 67 271-338 22-88 (391)
57 PF01602 Adaptin_N: Adaptin N 98.4 5.2E-06 1.1E-10 93.6 17.2 255 362-640 79-334 (526)
58 PF11789 zf-Nse: Zinc-finger o 98.4 8.8E-08 1.9E-12 72.6 1.8 44 273-316 10-55 (57)
59 KOG2160 Armadillo/beta-catenin 98.4 1.5E-05 3.3E-10 81.7 18.0 178 457-634 95-277 (342)
60 PF13639 zf-RING_2: Ring finge 98.4 1.6E-07 3.5E-12 67.7 2.2 40 276-316 2-44 (44)
61 COG5113 UFD2 Ubiquitin fusion 98.4 1.7E-06 3.7E-11 92.7 10.7 102 228-342 820-922 (929)
62 cd00256 VATPase_H VATPase_H, r 98.4 2.4E-05 5.2E-10 83.9 19.4 217 361-578 52-286 (429)
63 KOG4646 Uncharacterized conser 98.4 2.5E-06 5.3E-11 74.9 9.2 153 444-596 15-169 (173)
64 cd00162 RING RING-finger (Real 98.4 4.1E-07 8.9E-12 65.5 3.8 43 276-318 1-44 (45)
65 KOG0978 E3 ubiquitin ligase in 98.3 2.4E-05 5.2E-10 87.2 18.7 56 272-327 641-696 (698)
66 KOG4646 Uncharacterized conser 98.3 2.9E-06 6.2E-11 74.6 8.7 155 483-637 13-168 (173)
67 KOG2042 Ubiquitin fusion degra 98.3 2.5E-06 5.5E-11 97.4 9.3 74 268-342 864-938 (943)
68 smart00184 RING Ring finger. E 98.3 8.6E-07 1.9E-11 61.5 3.5 39 277-315 1-39 (39)
69 KOG2177 Predicted E3 ubiquitin 98.2 7.7E-07 1.7E-11 93.3 4.0 69 270-341 9-77 (386)
70 KOG2973 Uncharacterized conser 98.2 0.00032 6.9E-09 70.3 21.6 270 363-639 4-315 (353)
71 KOG0168 Putative ubiquitin fus 98.2 4.9E-05 1.1E-09 84.7 17.3 215 361-579 210-437 (1051)
72 PTZ00429 beta-adaptin; Provisi 98.2 0.00057 1.2E-08 78.9 26.3 256 362-637 68-324 (746)
73 PHA02926 zinc finger-like prot 98.1 1.5E-06 3.2E-11 82.5 3.5 51 271-321 167-231 (242)
74 KOG1293 Proteins containing ar 98.1 5.2E-05 1.1E-09 82.7 14.8 272 367-638 237-532 (678)
75 COG5574 PEX10 RING-finger-cont 98.1 1.3E-06 2.9E-11 84.8 2.3 53 272-324 213-266 (271)
76 KOG2171 Karyopherin (importin) 98.1 0.00014 3E-09 84.2 18.2 235 363-599 349-596 (1075)
77 PF05536 Neurochondrin: Neuroc 98.1 0.00022 4.7E-09 79.9 19.6 233 361-596 4-260 (543)
78 KOG2164 Predicted E3 ubiquitin 98.1 2E-06 4.4E-11 91.1 3.1 71 274-344 186-264 (513)
79 KOG1293 Proteins containing ar 98.0 0.00017 3.8E-09 78.7 17.3 152 456-607 388-543 (678)
80 PF05536 Neurochondrin: Neuroc 98.0 8.8E-05 1.9E-09 83.0 15.3 189 446-637 6-211 (543)
81 KOG0946 ER-Golgi vesicle-tethe 98.0 0.00016 3.5E-09 80.1 16.6 213 405-620 23-264 (970)
82 TIGR00570 cdk7 CDK-activating 98.0 7.3E-06 1.6E-10 83.0 5.8 53 273-325 2-59 (309)
83 KOG0311 Predicted E3 ubiquitin 98.0 1.1E-06 2.4E-11 88.6 -0.2 69 270-338 39-109 (381)
84 PTZ00429 beta-adaptin; Provisi 98.0 0.0012 2.5E-08 76.3 24.2 253 361-637 31-283 (746)
85 PF14634 zf-RING_5: zinc-RING 98.0 5E-06 1.1E-10 59.8 3.0 41 276-317 1-44 (44)
86 TIGR02270 conserved hypothetic 98.0 0.00068 1.5E-08 73.1 20.1 208 364-638 88-295 (410)
87 PF14664 RICTOR_N: Rapamycin-i 98.0 0.0023 4.9E-08 68.3 23.7 271 364-638 27-363 (371)
88 KOG2171 Karyopherin (importin) 97.9 0.00062 1.4E-08 79.0 20.2 257 375-637 262-547 (1075)
89 PF00514 Arm: Armadillo/beta-c 97.9 1.6E-05 3.4E-10 56.3 3.7 40 393-432 1-40 (41)
90 KOG2734 Uncharacterized conser 97.8 0.0018 3.8E-08 67.9 19.4 238 381-620 103-371 (536)
91 PF12678 zf-rbx1: RING-H2 zinc 97.8 1.7E-05 3.6E-10 63.8 3.8 39 277-316 22-73 (73)
92 COG1413 FOG: HEAT repeat [Ener 97.8 0.0022 4.8E-08 67.8 20.2 187 362-597 43-242 (335)
93 KOG2023 Nuclear transport rece 97.8 0.00034 7.3E-09 76.4 13.5 271 361-640 127-464 (885)
94 KOG2759 Vacuolar H+-ATPase V1 97.8 0.00089 1.9E-08 69.9 16.0 232 366-598 160-439 (442)
95 KOG2660 Locus-specific chromos 97.7 2.2E-05 4.8E-10 79.0 2.8 65 270-335 11-80 (331)
96 PF14664 RICTOR_N: Rapamycin-i 97.7 0.0042 9.1E-08 66.3 20.2 250 385-637 6-267 (371)
97 KOG2973 Uncharacterized conser 97.7 0.00091 2E-08 67.1 13.7 190 407-600 6-207 (353)
98 KOG0212 Uncharacterized conser 97.7 0.0009 2E-08 72.0 14.3 231 362-598 208-445 (675)
99 PF10165 Ric8: Guanine nucleot 97.6 0.0044 9.4E-08 68.1 19.4 257 383-640 2-338 (446)
100 COG5222 Uncharacterized conser 97.5 9.8E-05 2.1E-09 72.6 5.1 72 268-341 270-343 (427)
101 KOG1789 Endocytosis protein RM 97.5 0.01 2.2E-07 68.1 21.0 257 363-622 1772-2142(2235)
102 PF12348 CLASP_N: CLASP N term 97.5 0.0005 1.1E-08 68.5 10.3 181 455-640 17-207 (228)
103 PF00514 Arm: Armadillo/beta-c 97.5 9.3E-05 2E-09 52.3 3.5 40 434-473 1-40 (41)
104 KOG0297 TNF receptor-associate 97.5 5.9E-05 1.3E-09 81.0 3.4 67 270-337 17-85 (391)
105 KOG4159 Predicted E3 ubiquitin 97.5 7.2E-05 1.6E-09 79.2 4.0 71 269-340 79-154 (398)
106 KOG4413 26S proteasome regulat 97.5 0.0096 2.1E-07 60.3 18.1 278 360-638 126-438 (524)
107 TIGR02270 conserved hypothetic 97.5 0.013 2.9E-07 63.2 20.7 152 362-555 54-206 (410)
108 KOG2734 Uncharacterized conser 97.4 0.029 6.3E-07 59.1 21.6 238 360-598 123-401 (536)
109 KOG0289 mRNA splicing factor [ 97.4 0.00021 4.6E-09 74.1 6.0 51 275-326 1-52 (506)
110 PF12348 CLASP_N: CLASP N term 97.4 0.0008 1.7E-08 67.0 10.1 181 371-557 16-207 (228)
111 PF13646 HEAT_2: HEAT repeats; 97.4 0.00045 9.7E-09 57.5 7.0 86 406-511 1-88 (88)
112 KOG2023 Nuclear transport rece 97.4 0.0061 1.3E-07 67.0 16.7 267 361-639 173-505 (885)
113 KOG0212 Uncharacterized conser 97.4 0.0048 1E-07 66.6 15.7 236 404-641 167-408 (675)
114 PF10165 Ric8: Guanine nucleot 97.3 0.0084 1.8E-07 65.8 17.5 230 373-602 43-342 (446)
115 COG5369 Uncharacterized conser 97.3 0.002 4.2E-08 69.0 11.6 258 381-638 408-740 (743)
116 COG5152 Uncharacterized conser 97.3 9.7E-05 2.1E-09 68.4 1.6 48 270-320 194-241 (259)
117 COG1413 FOG: HEAT repeat [Ener 97.3 0.02 4.2E-07 60.6 19.5 158 360-556 72-242 (335)
118 PF13646 HEAT_2: HEAT repeats; 97.3 0.00066 1.4E-08 56.4 6.6 86 364-470 1-88 (88)
119 KOG3678 SARM protein (with ste 97.3 0.0032 7E-08 66.3 12.6 213 374-597 234-452 (832)
120 KOG0824 Predicted E3 ubiquitin 97.3 0.00011 2.4E-09 72.9 1.8 48 276-323 9-56 (324)
121 KOG1059 Vesicle coat complex A 97.3 0.016 3.5E-07 64.3 18.5 251 362-635 181-439 (877)
122 KOG4628 Predicted E3 ubiquitin 97.3 0.00017 3.6E-09 74.5 3.0 47 275-321 230-279 (348)
123 KOG1242 Protein containing ada 97.3 0.015 3.3E-07 63.8 18.0 267 361-637 133-442 (569)
124 KOG4413 26S proteasome regulat 97.2 0.026 5.6E-07 57.3 17.8 263 375-638 95-376 (524)
125 KOG1813 Predicted E3 ubiquitin 97.2 0.00018 3.9E-09 71.3 2.3 50 269-321 238-287 (313)
126 PF12861 zf-Apc11: Anaphase-pr 97.2 0.00042 9.1E-09 56.4 3.7 46 275-320 33-82 (85)
127 KOG0802 E3 ubiquitin ligase [P 97.1 0.00023 5E-09 80.1 2.0 48 272-320 289-341 (543)
128 KOG2879 Predicted E3 ubiquitin 97.1 0.0005 1.1E-08 67.4 3.8 50 271-320 236-287 (298)
129 COG5243 HRD1 HRD ubiquitin lig 97.0 0.00043 9.3E-09 70.3 3.4 48 272-320 285-345 (491)
130 smart00185 ARM Armadillo/beta- 97.0 0.0011 2.3E-08 46.4 4.6 39 394-432 2-40 (41)
131 COG5231 VMA13 Vacuolar H+-ATPa 97.0 0.05 1.1E-06 55.1 17.4 222 417-638 162-427 (432)
132 KOG1517 Guanine nucleotide bin 97.0 0.022 4.9E-07 65.6 16.6 227 379-605 487-740 (1387)
133 COG5240 SEC21 Vesicle coat com 97.0 0.024 5.3E-07 61.4 16.0 251 362-641 264-557 (898)
134 KOG1059 Vesicle coat complex A 97.0 0.042 9.1E-07 61.2 17.7 219 360-598 142-366 (877)
135 PF11841 DUF3361: Domain of un 96.9 0.018 3.9E-07 53.2 12.6 118 521-638 5-130 (160)
136 KOG1242 Protein containing ada 96.9 0.027 5.8E-07 62.0 15.6 224 362-598 216-445 (569)
137 PF05659 RPW8: Arabidopsis bro 96.8 0.017 3.6E-07 53.1 11.7 90 50-140 30-120 (147)
138 KOG3036 Protein involved in ce 96.8 0.21 4.5E-06 49.1 19.4 178 419-597 94-291 (293)
139 KOG0826 Predicted E3 ubiquitin 96.8 0.0012 2.6E-08 66.4 4.2 53 268-321 294-347 (357)
140 COG5181 HSH155 U2 snRNP splice 96.7 0.029 6.3E-07 61.3 14.1 221 362-599 604-872 (975)
141 KOG1002 Nucleotide excision re 96.7 0.0007 1.5E-08 71.7 1.6 52 272-323 534-589 (791)
142 COG5369 Uncharacterized conser 96.6 0.012 2.7E-07 63.1 10.5 197 423-619 408-617 (743)
143 COG5540 RING-finger-containing 96.6 0.0012 2.6E-08 65.5 2.7 47 275-321 324-373 (374)
144 smart00185 ARM Armadillo/beta- 96.6 0.0042 9E-08 43.4 4.9 39 435-473 2-40 (41)
145 KOG1241 Karyopherin (importin) 96.6 0.081 1.8E-06 59.4 16.8 266 362-640 129-436 (859)
146 KOG2259 Uncharacterized conser 96.6 0.024 5.3E-07 62.4 12.6 216 362-594 198-472 (823)
147 PF11841 DUF3361: Domain of un 96.6 0.035 7.5E-07 51.3 11.8 120 481-600 6-134 (160)
148 KOG2259 Uncharacterized conser 96.5 0.019 4E-07 63.3 11.1 214 409-637 203-473 (823)
149 KOG1248 Uncharacterized conser 96.4 0.092 2E-06 61.8 16.3 217 415-640 665-899 (1176)
150 KOG0213 Splicing factor 3b, su 96.4 0.14 3E-06 57.4 16.5 232 363-599 800-1067(1172)
151 KOG1517 Guanine nucleotide bin 96.3 0.092 2E-06 60.8 15.1 228 405-637 473-730 (1387)
152 KOG1062 Vesicle coat complex A 96.3 0.32 6.9E-06 55.2 19.0 217 409-640 112-380 (866)
153 PF04063 DUF383: Domain of unk 96.2 0.03 6.5E-07 53.9 9.6 121 500-620 9-157 (192)
154 PF04641 Rtf2: Rtf2 RING-finge 96.1 0.0046 1E-07 62.8 3.5 54 271-326 110-167 (260)
155 COG5096 Vesicle coat complex, 96.0 0.13 2.7E-06 59.1 14.8 159 328-516 38-196 (757)
156 KOG1789 Endocytosis protein RM 96.0 0.76 1.6E-05 53.6 20.5 136 379-515 1742-1883(2235)
157 KOG0213 Splicing factor 3b, su 96.0 0.14 3E-06 57.3 14.4 151 487-639 800-954 (1172)
158 KOG1241 Karyopherin (importin) 96.0 0.47 1E-05 53.6 18.5 266 362-640 172-478 (859)
159 PF09759 Atx10homo_assoc: Spin 95.9 0.029 6.4E-07 47.9 7.2 66 543-608 2-70 (102)
160 KOG0804 Cytoplasmic Zn-finger 95.9 0.0033 7.1E-08 65.9 1.6 47 271-320 172-222 (493)
161 PF13513 HEAT_EZ: HEAT-like re 95.9 0.0094 2E-07 44.8 3.7 55 459-513 1-55 (55)
162 PF13513 HEAT_EZ: HEAT-like re 95.9 0.015 3.3E-07 43.7 4.7 55 418-472 1-55 (55)
163 KOG1061 Vesicle coat complex A 95.8 0.11 2.4E-06 58.6 12.9 73 361-436 120-192 (734)
164 COG5096 Vesicle coat complex, 95.8 0.24 5.2E-06 56.9 15.6 168 371-557 28-196 (757)
165 PF09759 Atx10homo_assoc: Spin 95.8 0.035 7.7E-07 47.4 6.9 65 379-443 3-70 (102)
166 KOG3036 Protein involved in ce 95.8 0.25 5.4E-06 48.5 13.4 139 502-640 95-248 (293)
167 KOG1062 Vesicle coat complex A 95.7 1.4 3.1E-05 50.2 21.0 68 361-433 141-208 (866)
168 KOG1077 Vesicle coat complex A 95.7 0.33 7.2E-06 54.2 15.6 264 361-641 110-400 (938)
169 KOG1645 RING-finger-containing 95.6 0.0069 1.5E-07 62.8 2.6 60 275-334 5-70 (463)
170 PF04078 Rcd1: Cell differenti 95.6 0.32 6.8E-06 48.6 14.1 192 375-566 8-228 (262)
171 PF04063 DUF383: Domain of unk 95.6 0.049 1.1E-06 52.5 8.2 122 416-537 7-157 (192)
172 KOG3039 Uncharacterized conser 95.6 0.0091 2E-07 57.7 3.0 54 273-327 220-277 (303)
173 KOG1824 TATA-binding protein-i 95.6 0.28 6.1E-06 56.5 14.9 232 360-602 45-291 (1233)
174 KOG1061 Vesicle coat complex A 95.6 0.18 3.8E-06 57.0 13.3 242 362-623 49-293 (734)
175 KOG4172 Predicted E3 ubiquitin 95.5 0.0036 7.8E-08 45.6 0.0 46 275-320 8-54 (62)
176 KOG4367 Predicted Zn-finger pr 95.5 0.0057 1.2E-07 63.4 1.3 35 272-306 2-36 (699)
177 PF11698 V-ATPase_H_C: V-ATPas 95.4 0.038 8.2E-07 48.5 6.0 72 360-431 41-113 (119)
178 PF13764 E3_UbLigase_R4: E3 ub 95.3 1.3 2.8E-05 51.8 19.7 238 400-640 113-407 (802)
179 smart00744 RINGv The RING-vari 95.0 0.025 5.4E-07 41.5 3.2 41 276-316 1-49 (49)
180 PF11793 FANCL_C: FANCL C-term 94.9 0.0085 1.8E-07 47.7 0.5 48 274-321 2-67 (70)
181 KOG1785 Tyrosine kinase negati 94.9 0.011 2.5E-07 60.7 1.4 47 276-322 371-418 (563)
182 KOG3039 Uncharacterized conser 94.9 0.017 3.7E-07 55.8 2.5 38 270-307 39-76 (303)
183 KOG1078 Vesicle coat complex C 94.7 2.5 5.4E-05 48.2 18.8 256 363-639 246-532 (865)
184 KOG1060 Vesicle coat complex A 94.6 0.86 1.9E-05 51.7 15.1 209 364-597 37-246 (968)
185 COG5231 VMA13 Vacuolar H+-ATPa 94.6 0.81 1.8E-05 46.7 13.6 221 374-596 161-427 (432)
186 KOG1824 TATA-binding protein-i 94.6 0.36 7.9E-06 55.6 12.2 264 366-639 9-286 (1233)
187 KOG0828 Predicted E3 ubiquitin 94.5 0.016 3.5E-07 61.4 1.5 51 271-321 568-635 (636)
188 PF12717 Cnd1: non-SMC mitotic 94.4 1.5 3.2E-05 41.9 14.7 92 417-516 1-93 (178)
189 PF05004 IFRD: Interferon-rela 94.3 2.1 4.6E-05 44.7 16.7 189 447-639 45-257 (309)
190 KOG1734 Predicted RING-contain 94.3 0.011 2.4E-07 57.8 -0.3 56 272-327 222-288 (328)
191 KOG2999 Regulator of Rac1, req 94.2 0.74 1.6E-05 50.2 12.9 152 487-638 84-241 (713)
192 KOG4151 Myosin assembly protei 94.2 0.38 8.3E-06 54.6 11.3 194 434-632 493-692 (748)
193 COG5181 HSH155 U2 snRNP splice 94.2 0.25 5.5E-06 54.3 9.5 149 406-556 606-759 (975)
194 PF04078 Rcd1: Cell differenti 94.1 0.63 1.4E-05 46.6 11.4 135 504-640 68-219 (262)
195 KOG1039 Predicted E3 ubiquitin 93.9 0.034 7.3E-07 58.1 2.3 50 272-321 159-222 (344)
196 KOG0567 HEAT repeat-containing 93.9 2.9 6.2E-05 41.8 15.3 197 360-596 65-279 (289)
197 PF08045 CDC14: Cell division 93.8 0.9 2E-05 45.7 12.2 94 543-636 107-204 (257)
198 PF08569 Mo25: Mo25-like; Int 93.7 0.81 1.7E-05 48.2 12.2 196 361-558 75-285 (335)
199 PF14668 RICTOR_V: Rapamycin-i 93.7 0.24 5.2E-06 39.6 6.4 66 503-568 4-70 (73)
200 KOG2999 Regulator of Rac1, req 93.7 0.9 1.9E-05 49.6 12.4 155 446-600 84-245 (713)
201 COG5215 KAP95 Karyopherin (imp 93.6 3.4 7.3E-05 45.5 16.4 190 360-556 319-529 (858)
202 KOG1248 Uncharacterized conser 93.4 1.5 3.3E-05 52.0 14.6 218 373-598 665-899 (1176)
203 PF05004 IFRD: Interferon-rela 93.3 1.8 3.9E-05 45.2 14.0 184 412-597 51-257 (309)
204 PF12755 Vac14_Fab1_bd: Vacuol 93.3 0.46 9.9E-06 40.4 7.9 70 568-638 27-96 (97)
205 PF02891 zf-MIZ: MIZ/SP-RING z 93.2 0.088 1.9E-06 38.8 2.9 44 275-318 3-50 (50)
206 KOG1077 Vesicle coat complex A 93.2 4.8 0.0001 45.5 17.1 237 377-629 163-423 (938)
207 KOG2979 Protein involved in DN 93.0 0.086 1.9E-06 51.8 3.4 45 274-318 176-222 (262)
208 PF06371 Drf_GBD: Diaphanous G 92.8 0.32 6.9E-06 46.6 7.1 77 520-596 100-186 (187)
209 KOG3113 Uncharacterized conser 92.8 0.08 1.7E-06 51.6 2.7 52 272-326 109-164 (293)
210 PF12755 Vac14_Fab1_bd: Vacuol 92.6 0.47 1E-05 40.4 7.0 90 503-595 3-94 (97)
211 KOG1240 Protein kinase contain 92.6 2.8 6E-05 50.0 15.1 252 375-639 436-725 (1431)
212 KOG2611 Neurochondrin/leucine- 92.6 3.2 7E-05 44.7 14.3 225 367-595 16-272 (698)
213 KOG2817 Predicted E3 ubiquitin 92.6 0.084 1.8E-06 55.1 2.8 47 271-317 331-382 (394)
214 COG5194 APC11 Component of SCF 92.3 0.13 2.8E-06 40.9 2.9 45 275-320 32-81 (88)
215 KOG1788 Uncharacterized conser 92.3 4.8 0.0001 47.2 16.1 252 383-639 663-982 (2799)
216 PF11701 UNC45-central: Myosin 92.3 0.38 8.2E-06 44.9 6.6 146 445-594 3-156 (157)
217 KOG2274 Predicted importin 9 [ 92.3 2.7 5.9E-05 48.6 14.2 216 415-638 461-688 (1005)
218 KOG2611 Neurochondrin/leucine- 92.3 5.5 0.00012 43.0 15.6 145 450-596 16-181 (698)
219 PF12719 Cnd3: Nuclear condens 92.2 2.3 4.9E-05 44.2 13.0 168 405-579 27-208 (298)
220 PF07814 WAPL: Wings apart-lik 92.2 2.6 5.6E-05 45.1 13.6 237 361-609 20-311 (361)
221 COG5209 RCD1 Uncharacterized p 92.1 2.3 4.9E-05 41.4 11.5 146 421-566 117-278 (315)
222 KOG4692 Predicted E3 ubiquitin 92.1 0.09 2E-06 53.5 2.2 47 273-320 421-467 (489)
223 COG5215 KAP95 Karyopherin (imp 92.1 9.3 0.0002 42.3 17.2 270 362-640 133-438 (858)
224 COG5219 Uncharacterized conser 91.8 0.069 1.5E-06 60.9 1.2 50 271-320 1466-1523(1525)
225 KOG0211 Protein phosphatase 2A 91.8 3.4 7.3E-05 48.1 14.7 210 375-592 250-461 (759)
226 KOG0827 Predicted E3 ubiquitin 91.8 0.11 2.4E-06 53.7 2.4 49 274-322 4-58 (465)
227 KOG1001 Helicase-like transcri 91.7 0.05 1.1E-06 62.3 -0.1 48 275-323 455-503 (674)
228 PF14570 zf-RING_4: RING/Ubox 91.4 0.15 3.2E-06 37.0 2.1 43 277-319 1-47 (48)
229 KOG0567 HEAT repeat-containing 91.3 17 0.00038 36.5 17.7 195 403-638 66-279 (289)
230 PF12031 DUF3518: Domain of un 91.3 0.9 2E-05 44.8 8.1 87 542-628 139-234 (257)
231 KOG4653 Uncharacterized conser 91.2 3.1 6.7E-05 47.9 13.1 210 417-636 740-961 (982)
232 PF12717 Cnd1: non-SMC mitotic 91.0 3.7 8.1E-05 39.0 12.1 93 458-557 1-93 (178)
233 KOG4265 Predicted E3 ubiquitin 90.9 0.14 3E-06 52.9 2.2 47 274-321 290-337 (349)
234 PF06371 Drf_GBD: Diaphanous G 90.8 0.96 2.1E-05 43.2 7.9 110 362-473 66-186 (187)
235 PF11698 V-ATPase_H_C: V-ATPas 90.6 0.58 1.3E-05 41.2 5.5 70 568-637 43-113 (119)
236 PF14447 Prok-RING_4: Prokaryo 90.6 0.15 3.2E-06 37.9 1.5 47 274-323 7-53 (55)
237 KOG3800 Predicted E3 ubiquitin 90.6 0.21 4.4E-06 50.0 3.0 49 276-324 2-55 (300)
238 KOG1493 Anaphase-promoting com 90.6 0.12 2.5E-06 40.8 1.0 49 272-320 29-81 (84)
239 KOG1060 Vesicle coat complex A 90.6 16 0.00035 42.0 17.8 208 408-640 39-247 (968)
240 KOG1943 Beta-tubulin folding c 90.5 19 0.00041 42.9 18.8 222 361-593 340-607 (1133)
241 COG5240 SEC21 Vesicle coat com 90.0 18 0.00038 40.2 17.0 113 361-480 222-338 (898)
242 KOG0301 Phospholipase A2-activ 90.0 7.2 0.00016 43.8 14.3 166 368-538 550-727 (745)
243 PF13764 E3_UbLigase_R4: E3 ub 90.0 26 0.00056 41.4 19.7 227 360-597 115-406 (802)
244 PF06025 DUF913: Domain of Unk 89.9 5.8 0.00012 42.7 13.6 211 381-608 3-243 (379)
245 PF08569 Mo25: Mo25-like; Int 89.8 8.6 0.00019 40.6 14.4 156 482-637 72-236 (335)
246 PF08045 CDC14: Cell division 89.7 2.6 5.7E-05 42.4 10.0 93 379-471 108-204 (257)
247 KOG4151 Myosin assembly protei 89.7 6.2 0.00013 45.3 13.9 239 392-635 492-737 (748)
248 PF12719 Cnd3: Nuclear condens 89.2 7 0.00015 40.6 13.3 168 363-538 27-208 (298)
249 KOG1240 Protein kinase contain 89.2 6.2 0.00014 47.2 13.7 229 406-641 424-687 (1431)
250 KOG3161 Predicted E3 ubiquitin 89.1 0.19 4.2E-06 55.1 1.7 59 272-334 9-76 (861)
251 COG5175 MOT2 Transcriptional r 88.9 0.27 5.7E-06 49.9 2.3 48 276-323 16-67 (480)
252 KOG1820 Microtubule-associated 88.7 4.5 9.8E-05 47.5 12.4 183 364-556 255-443 (815)
253 KOG1571 Predicted E3 ubiquitin 88.6 0.23 5E-06 51.3 1.7 47 270-320 301-347 (355)
254 PF12530 DUF3730: Protein of u 88.6 23 0.00051 35.3 16.1 136 406-555 2-150 (234)
255 KOG0825 PHD Zn-finger protein 88.4 0.12 2.6E-06 57.9 -0.5 48 273-321 122-172 (1134)
256 KOG0211 Protein phosphatase 2A 88.3 11 0.00025 43.9 15.2 264 364-639 357-625 (759)
257 KOG4185 Predicted E3 ubiquitin 88.1 0.52 1.1E-05 48.9 4.1 63 275-337 4-77 (296)
258 KOG4275 Predicted E3 ubiquitin 87.8 0.25 5.5E-06 49.2 1.4 42 274-320 300-342 (350)
259 KOG2274 Predicted importin 9 [ 86.6 27 0.00059 40.9 16.5 224 373-604 461-696 (1005)
260 PF02985 HEAT: HEAT repeat; I 86.2 1.3 2.9E-05 28.8 3.7 30 569-598 1-30 (31)
261 PF12460 MMS19_C: RNAPII trans 86.1 8.4 0.00018 42.0 12.2 186 363-558 190-396 (415)
262 COG5209 RCD1 Uncharacterized p 85.7 2.2 4.8E-05 41.5 6.4 97 541-637 114-216 (315)
263 KOG0883 Cyclophilin type, U bo 85.7 0.59 1.3E-05 48.5 2.7 52 274-326 40-91 (518)
264 KOG1940 Zn-finger protein [Gen 85.3 0.52 1.1E-05 47.6 2.1 43 274-317 158-204 (276)
265 PF12460 MMS19_C: RNAPII trans 84.5 15 0.00033 40.0 13.3 129 486-617 271-413 (415)
266 KOG4653 Uncharacterized conser 84.4 8.1 0.00018 44.7 11.0 174 457-639 739-918 (982)
267 PF05918 API5: Apoptosis inhib 84.4 4.5 9.7E-05 45.3 9.0 128 489-635 26-158 (556)
268 KOG0298 DEAD box-containing he 84.4 5.6 0.00012 47.9 10.1 45 272-317 1151-1196(1394)
269 KOG1058 Vesicle coat complex C 84.2 23 0.0005 40.6 14.2 137 445-600 317-466 (948)
270 PF05290 Baculo_IE-1: Baculovi 84.1 0.93 2E-05 40.1 2.8 51 273-323 79-135 (140)
271 PF05918 API5: Apoptosis inhib 83.9 37 0.00081 38.2 15.9 133 361-511 22-158 (556)
272 PF10367 Vps39_2: Vacuolar sor 83.8 1.2 2.6E-05 38.3 3.6 34 269-302 73-108 (109)
273 KOG1058 Vesicle coat complex C 83.7 46 0.00099 38.4 16.2 103 446-557 244-347 (948)
274 PF02985 HEAT: HEAT repeat; I 83.4 2.3 5E-05 27.6 3.9 30 611-640 1-30 (31)
275 KOG1941 Acetylcholine receptor 83.1 27 0.00058 36.8 13.2 44 274-317 365-413 (518)
276 KOG2930 SCF ubiquitin ligase, 83.0 0.82 1.8E-05 38.4 2.0 27 291-318 80-106 (114)
277 KOG1991 Nuclear transport rece 82.7 30 0.00065 40.9 14.8 134 403-538 409-558 (1010)
278 KOG2062 26S proteasome regulat 82.7 31 0.00068 39.5 14.4 157 446-624 520-679 (929)
279 PF11701 UNC45-central: Myosin 82.6 10 0.00022 35.4 9.4 143 487-634 4-154 (157)
280 PF14668 RICTOR_V: Rapamycin-i 82.6 9 0.0002 30.7 7.7 66 544-610 4-70 (73)
281 KOG0915 Uncharacterized conser 82.4 13 0.00028 45.8 12.1 258 364-638 820-1109(1702)
282 KOG1243 Protein kinase [Genera 82.4 11 0.00025 42.7 11.1 254 366-636 258-512 (690)
283 cd03569 VHS_Hrs_Vps27p VHS dom 82.3 13 0.00028 34.0 9.8 74 360-433 39-114 (142)
284 PF08324 PUL: PUL domain; Int 81.5 15 0.00032 37.4 11.1 169 421-589 80-266 (268)
285 COG5220 TFB3 Cdk activating ki 81.3 0.53 1.1E-05 45.6 0.3 49 273-321 9-65 (314)
286 KOG2114 Vacuolar assembly/sort 80.7 1.3 2.9E-05 50.7 3.2 44 270-317 836-880 (933)
287 KOG4535 HEAT and armadillo rep 80.6 2.3 5E-05 45.8 4.8 178 420-598 407-604 (728)
288 PRK14707 hypothetical protein; 80.6 92 0.002 40.4 18.3 256 375-634 178-440 (2710)
289 KOG0414 Chromosome condensatio 80.3 7.1 0.00015 46.7 8.9 139 405-556 920-1064(1251)
290 PF11707 Npa1: Ribosome 60S bi 80.3 72 0.0016 33.6 16.1 158 363-520 57-242 (330)
291 KOG3665 ZYG-1-like serine/thre 79.9 20 0.00044 41.8 12.6 194 427-638 494-696 (699)
292 KOG1820 Microtubule-associated 79.9 32 0.00068 40.7 14.1 187 446-638 254-442 (815)
293 PF06025 DUF913: Domain of Unk 79.8 21 0.00045 38.4 11.9 82 376-457 123-208 (379)
294 PRK14707 hypothetical protein; 79.8 1.2E+02 0.0026 39.3 19.0 257 362-623 205-471 (2710)
295 PF12530 DUF3730: Protein of u 79.8 68 0.0015 31.9 15.4 136 365-514 3-150 (234)
296 COG5109 Uncharacterized conser 79.6 1.3 2.8E-05 44.8 2.3 48 270-317 332-384 (396)
297 cd03561 VHS VHS domain family; 79.2 9.4 0.0002 34.4 7.8 74 360-433 35-112 (133)
298 KOG2933 Uncharacterized conser 79.2 10 0.00022 38.9 8.6 143 360-513 86-232 (334)
299 cd03572 ENTH_epsin_related ENT 79.1 7 0.00015 34.7 6.6 72 569-640 39-120 (122)
300 PF12031 DUF3518: Domain of un 78.9 5.8 0.00013 39.3 6.6 79 460-538 139-227 (257)
301 COG5627 MMS21 DNA repair prote 78.7 1.2 2.6E-05 43.1 1.8 55 274-328 189-247 (275)
302 cd03561 VHS VHS domain family; 78.3 12 0.00025 33.8 8.1 72 568-639 37-112 (133)
303 smart00288 VHS Domain present 78.1 22 0.00048 32.0 9.8 74 360-433 35-111 (133)
304 PHA02825 LAP/PHD finger-like p 77.9 2.8 6E-05 38.5 3.8 49 272-321 6-60 (162)
305 KOG2025 Chromosome condensatio 77.8 86 0.0019 36.0 15.8 126 420-551 62-188 (892)
306 PF10363 DUF2435: Protein of u 77.8 5.7 0.00012 33.4 5.4 71 361-433 2-72 (92)
307 KOG3002 Zn finger protein [Gen 77.7 2.2 4.7E-05 44.0 3.5 60 270-336 44-104 (299)
308 cd03567 VHS_GGA VHS domain fam 77.7 26 0.00056 31.9 10.1 74 360-433 36-116 (139)
309 PF08324 PUL: PUL domain; Int 77.7 16 0.00034 37.2 9.9 136 498-633 122-268 (268)
310 KOG1967 DNA repair/transcripti 77.3 8.8 0.00019 44.8 8.3 185 363-550 816-1018(1030)
311 PF14225 MOR2-PAG1_C: Cell mor 77.3 87 0.0019 31.8 14.8 163 418-597 76-254 (262)
312 cd03568 VHS_STAM VHS domain fa 77.2 26 0.00055 32.2 10.0 74 360-433 35-110 (144)
313 KOG3665 ZYG-1-like serine/thre 77.1 48 0.001 38.8 14.5 191 385-593 494-693 (699)
314 PF05883 Baculo_RING: Baculovi 76.8 2.4 5.3E-05 37.9 3.0 52 274-326 26-86 (134)
315 PF14225 MOR2-PAG1_C: Cell mor 76.6 92 0.002 31.7 15.2 174 445-636 60-251 (262)
316 KOG1814 Predicted E3 ubiquitin 76.3 2.8 6E-05 44.3 3.7 33 274-306 184-219 (445)
317 smart00638 LPD_N Lipoprotein N 76.3 53 0.0012 37.4 14.7 202 405-632 312-538 (574)
318 KOG1566 Conserved protein Mo25 76.2 68 0.0015 33.2 13.4 196 361-558 78-288 (342)
319 KOG1967 DNA repair/transcripti 75.0 9.3 0.0002 44.6 7.7 147 362-510 867-1019(1030)
320 PF07814 WAPL: Wings apart-lik 74.4 95 0.0021 33.2 15.1 91 406-496 23-116 (361)
321 KOG4535 HEAT and armadillo rep 74.3 3.1 6.8E-05 44.8 3.6 171 464-636 410-600 (728)
322 cd03568 VHS_STAM VHS domain fa 74.3 14 0.0003 33.9 7.5 71 568-638 37-109 (144)
323 KOG2956 CLIP-associating prote 74.1 79 0.0017 34.5 13.8 184 362-555 286-476 (516)
324 PF10363 DUF2435: Protein of u 73.0 14 0.00031 31.0 6.6 71 530-601 6-76 (92)
325 PF11865 DUF3385: Domain of un 72.7 31 0.00067 32.2 9.6 143 486-636 10-154 (160)
326 PF14569 zf-UDP: Zinc-binding 72.2 4.5 9.9E-05 32.3 3.2 47 275-321 10-63 (80)
327 cd03569 VHS_Hrs_Vps27p VHS dom 72.2 19 0.00041 32.9 7.8 72 568-639 41-114 (142)
328 COG5116 RPN2 26S proteasome re 72.1 24 0.00052 39.1 9.6 151 450-622 521-674 (926)
329 KOG2933 Uncharacterized conser 72.0 19 0.00042 37.0 8.4 136 487-634 89-229 (334)
330 KOG1788 Uncharacterized conser 72.0 98 0.0021 37.2 14.6 80 519-598 900-983 (2799)
331 PF12906 RINGv: RING-variant d 71.9 3.3 7E-05 30.0 2.2 39 277-315 1-47 (47)
332 PF14666 RICTOR_M: Rapamycin-i 71.8 99 0.0022 30.7 13.3 129 500-639 78-225 (226)
333 COG5098 Chromosome condensatio 71.7 13 0.00027 42.2 7.5 132 500-637 276-413 (1128)
334 KOG2062 26S proteasome regulat 70.8 41 0.00088 38.7 11.2 124 444-583 553-680 (929)
335 KOG1943 Beta-tubulin folding c 70.6 2.5E+02 0.0054 34.0 20.2 151 485-640 340-502 (1133)
336 KOG1078 Vesicle coat complex C 70.2 1E+02 0.0022 35.9 14.2 70 405-478 246-315 (865)
337 PF14446 Prok-RING_1: Prokaryo 69.7 3.9 8.4E-05 30.5 2.2 30 274-303 5-38 (54)
338 KOG0915 Uncharacterized conser 69.3 2.8E+02 0.0061 35.0 18.2 201 375-579 970-1183(1702)
339 PF11707 Npa1: Ribosome 60S bi 68.2 1.6E+02 0.0035 30.9 18.6 154 406-559 58-240 (330)
340 PF14500 MMS19_N: Dos2-interac 68.1 1.4E+02 0.0031 30.2 16.0 214 408-640 3-238 (262)
341 cd03567 VHS_GGA VHS domain fam 68.0 29 0.00062 31.6 8.0 71 568-638 38-115 (139)
342 PF03854 zf-P11: P-11 zinc fin 67.8 2.1 4.5E-05 30.7 0.4 37 284-321 10-47 (50)
343 PF14500 MMS19_N: Dos2-interac 67.3 95 0.0021 31.5 12.5 214 368-598 5-238 (262)
344 KOG1991 Nuclear transport rece 66.7 1.4E+02 0.003 35.7 14.7 150 425-579 392-558 (1010)
345 KOG0414 Chromosome condensatio 66.6 46 0.001 40.2 11.1 139 487-639 920-1064(1251)
346 KOG2956 CLIP-associating prote 66.3 88 0.0019 34.2 12.2 145 488-639 331-477 (516)
347 KOG4464 Signaling protein RIC- 65.8 2E+02 0.0043 31.0 16.0 102 375-476 110-233 (532)
348 PHA02862 5L protein; Provision 63.6 5.9 0.00013 35.7 2.5 45 276-321 4-54 (156)
349 KOG4362 Transcriptional regula 63.5 2.9 6.4E-05 47.4 0.8 49 274-322 21-71 (684)
350 KOG2137 Protein kinase [Signal 63.1 87 0.0019 36.0 12.0 130 485-623 388-521 (700)
351 PF08746 zf-RING-like: RING-li 62.9 8.3 0.00018 27.4 2.7 39 277-315 1-43 (43)
352 PRK12495 hypothetical protein; 62.9 10 0.00022 36.9 4.1 33 209-242 5-37 (226)
353 KOG2137 Protein kinase [Signal 62.7 68 0.0015 36.8 11.1 137 362-504 389-526 (700)
354 PF14726 RTTN_N: Rotatin, an a 61.7 54 0.0012 27.9 7.9 92 377-468 2-94 (98)
355 KOG2034 Vacuolar sorting prote 61.0 9 0.0002 44.5 4.0 39 269-307 812-852 (911)
356 KOG0396 Uncharacterized conser 60.7 4.7 0.0001 42.0 1.6 48 275-322 331-381 (389)
357 PF08167 RIX1: rRNA processing 60.6 50 0.0011 30.9 8.5 107 362-472 25-141 (165)
358 smart00288 VHS Domain present 59.7 46 0.001 29.9 7.8 72 568-639 37-111 (133)
359 PF01347 Vitellogenin_N: Lipop 59.7 59 0.0013 37.4 10.6 164 444-631 394-581 (618)
360 PF08167 RIX1: rRNA processing 58.8 30 0.00065 32.4 6.7 108 446-556 26-143 (165)
361 KOG4739 Uncharacterized protei 57.8 4 8.7E-05 40.2 0.5 48 277-327 6-55 (233)
362 PF00790 VHS: VHS domain; Int 57.8 32 0.00069 31.2 6.5 71 568-638 42-117 (140)
363 cd08050 TAF6 TATA Binding Prot 57.5 69 0.0015 34.0 9.8 144 361-514 177-339 (343)
364 PF11865 DUF3385: Domain of un 57.1 84 0.0018 29.3 9.3 141 446-595 11-155 (160)
365 KOG1020 Sister chromatid cohes 57.1 1.1E+02 0.0023 38.3 11.9 107 485-600 815-924 (1692)
366 KOG2025 Chromosome condensatio 56.8 73 0.0016 36.6 9.9 103 527-634 85-188 (892)
367 KOG0825 PHD Zn-finger protein 56.1 12 0.00025 42.9 3.7 47 269-315 91-149 (1134)
368 PF14726 RTTN_N: Rotatin, an a 55.9 55 0.0012 27.9 7.0 68 526-593 29-96 (98)
369 PF07191 zinc-ribbons_6: zinc- 55.9 0.92 2E-05 35.6 -3.4 42 274-321 1-42 (70)
370 PF05605 zf-Di19: Drought indu 55.4 5.6 0.00012 29.6 0.9 38 273-317 1-39 (54)
371 TIGR00634 recN DNA repair prot 54.8 3.7E+02 0.008 30.6 16.7 74 56-134 184-263 (563)
372 KOG3970 Predicted E3 ubiquitin 54.5 10 0.00022 36.7 2.6 45 275-319 51-104 (299)
373 PF00790 VHS: VHS domain; Int 54.4 21 0.00046 32.4 4.7 74 360-433 40-118 (140)
374 COG1675 TFA1 Transcription ini 54.2 48 0.001 31.4 7.0 51 272-338 111-162 (176)
375 PF06844 DUF1244: Protein of u 53.8 7.5 0.00016 30.0 1.3 13 295-307 11-23 (68)
376 KOG1812 Predicted E3 ubiquitin 53.8 7.3 0.00016 42.0 1.7 33 274-306 146-182 (384)
377 smart00531 TFIIE Transcription 53.1 18 0.00039 33.2 4.0 39 272-322 97-136 (147)
378 COG5098 Chromosome condensatio 52.4 69 0.0015 36.6 8.8 108 488-600 301-418 (1128)
379 PF10272 Tmpp129: Putative tra 52.0 9.2 0.0002 40.4 2.1 29 295-323 314-354 (358)
380 KOG3899 Uncharacterized conser 51.8 7.8 0.00017 38.9 1.4 29 294-322 327-367 (381)
381 PF08216 CTNNBL: Catenin-beta- 51.7 13 0.00028 32.1 2.6 42 380-422 64-105 (108)
382 KOG3579 Predicted E3 ubiquitin 51.6 8.8 0.00019 38.5 1.7 35 273-307 267-305 (352)
383 KOG4718 Non-SMC (structural ma 51.0 8.6 0.00019 36.9 1.5 45 275-320 182-227 (235)
384 cd00350 rubredoxin_like Rubred 50.8 11 0.00024 24.9 1.7 11 308-318 16-26 (33)
385 KOG2032 Uncharacterized conser 50.8 69 0.0015 35.1 8.3 143 413-556 267-415 (533)
386 PLN02189 cellulose synthase 50.1 13 0.00028 44.5 3.0 46 275-320 35-87 (1040)
387 PF06416 DUF1076: Protein of u 49.9 12 0.00027 32.1 2.1 52 272-324 38-95 (113)
388 PF12830 Nipped-B_C: Sister ch 49.3 68 0.0015 30.7 7.5 68 569-641 9-76 (187)
389 TIGR00373 conserved hypothetic 48.9 32 0.00069 32.1 5.0 36 272-323 107-142 (158)
390 PLN02436 cellulose synthase A 48.5 14 0.0003 44.3 3.0 46 275-320 37-89 (1094)
391 PHA03096 p28-like protein; Pro 47.9 12 0.00026 38.4 2.1 43 275-317 179-231 (284)
392 KOG3268 Predicted E3 ubiquitin 47.9 15 0.00033 34.1 2.6 32 290-321 188-229 (234)
393 PRK06266 transcription initiat 47.2 30 0.00064 33.0 4.5 53 272-340 115-168 (178)
394 KOG4445 Uncharacterized conser 46.8 18 0.00039 36.7 3.1 49 274-322 115-188 (368)
395 PF04641 Rtf2: Rtf2 RING-finge 46.7 22 0.00048 36.1 3.9 36 273-308 33-69 (260)
396 PF14353 CpXC: CpXC protein 46.6 13 0.00028 33.2 1.9 47 274-320 1-49 (128)
397 COG5218 YCG1 Chromosome conden 46.0 79 0.0017 35.5 7.9 98 527-631 91-191 (885)
398 PF10521 DUF2454: Protein of u 45.6 1.4E+02 0.003 30.7 9.6 72 485-556 118-203 (282)
399 PF01347 Vitellogenin_N: Lipop 45.5 5.2E+02 0.011 29.6 17.6 206 363-593 348-585 (618)
400 COG5218 YCG1 Chromosome conden 45.4 3.2E+02 0.0069 31.0 12.3 98 444-548 90-191 (885)
401 COG5236 Uncharacterized conser 44.3 17 0.00036 37.5 2.4 48 272-319 59-107 (493)
402 cd00730 rubredoxin Rubredoxin; 44.1 11 0.00023 27.8 0.8 13 270-282 30-42 (50)
403 KOG2038 CAATT-binding transcri 44.1 1.7E+02 0.0037 34.0 10.3 206 362-595 196-407 (988)
404 PLN02638 cellulose synthase A 44.0 17 0.00037 43.7 2.8 46 275-320 18-70 (1079)
405 COG5656 SXM1 Importin, protein 43.6 6E+02 0.013 29.8 15.5 119 403-523 407-536 (970)
406 PF10274 ParcG: Parkin co-regu 43.5 2.6E+02 0.0057 26.7 10.2 73 486-558 38-111 (183)
407 KOG0301 Phospholipase A2-activ 43.3 3.7E+02 0.0079 30.9 12.6 168 417-590 557-740 (745)
408 smart00638 LPD_N Lipoprotein N 42.1 5.7E+02 0.012 29.1 15.9 90 446-552 443-541 (574)
409 KOG1243 Protein kinase [Genera 42.0 71 0.0015 36.5 7.1 60 491-552 452-511 (690)
410 PLN02195 cellulose synthase A 41.6 20 0.00043 42.7 2.9 45 276-320 8-59 (977)
411 PLN02915 cellulose synthase A 40.1 20 0.00044 42.9 2.7 47 274-320 15-68 (1044)
412 KOG1087 Cytosolic sorting prot 40.0 1E+02 0.0022 34.1 7.8 69 568-636 38-109 (470)
413 PF08216 CTNNBL: Catenin-beta- 39.9 31 0.00067 29.8 3.1 41 504-544 64-104 (108)
414 KOG1410 Nuclear transport rece 39.8 6.6E+02 0.014 29.1 16.7 40 558-597 245-284 (1082)
415 cd00197 VHS_ENTH_ANTH VHS, ENT 39.2 1.5E+02 0.0034 25.5 7.7 70 568-637 37-113 (115)
416 KOG2032 Uncharacterized conser 38.7 5.9E+02 0.013 28.3 16.8 149 362-514 258-414 (533)
417 PF00301 Rubredoxin: Rubredoxi 38.6 13 0.00028 27.0 0.5 13 270-282 30-42 (47)
418 COG5116 RPN2 26S proteasome re 38.2 1.3E+02 0.0028 33.7 8.1 99 360-473 549-649 (926)
419 COG3813 Uncharacterized protei 38.2 35 0.00077 26.8 2.8 36 292-330 27-62 (84)
420 PRK11088 rrmA 23S rRNA methylt 38.1 18 0.00039 36.9 1.7 25 274-298 2-29 (272)
421 PF13251 DUF4042: Domain of un 37.5 3.5E+02 0.0076 25.8 10.2 108 488-598 41-175 (182)
422 PF07800 DUF1644: Protein of u 37.1 15 0.00032 33.9 0.7 20 273-292 1-20 (162)
423 KOG1566 Conserved protein Mo25 36.9 5.1E+02 0.011 27.0 15.0 207 400-607 75-298 (342)
424 PF13251 DUF4042: Domain of un 36.5 1.6E+02 0.0035 28.1 7.8 136 420-558 2-176 (182)
425 KOG1815 Predicted E3 ubiquitin 36.3 26 0.00057 38.6 2.7 36 272-307 68-104 (444)
426 cd03562 CID CID (CTD-Interacti 35.7 2.2E+02 0.0047 24.5 8.0 71 568-638 37-107 (114)
427 PF04216 FdhE: Protein involve 34.9 7 0.00015 40.4 -1.9 45 273-318 171-220 (290)
428 PF06676 DUF1178: Protein of u 34.8 16 0.00035 33.5 0.6 27 291-322 9-45 (148)
429 PF11791 Aconitase_B_N: Aconit 34.5 55 0.0012 30.1 3.9 29 487-515 95-123 (154)
430 PF04499 SAPS: SIT4 phosphatas 34.3 2.3E+02 0.0051 31.5 9.7 110 526-639 20-149 (475)
431 KOG1087 Cytosolic sorting prot 33.9 2.1E+02 0.0045 31.7 9.0 72 361-432 37-111 (470)
432 cd03565 VHS_Tom1 VHS domain fa 33.8 2.2E+02 0.0048 25.9 7.9 74 360-433 36-115 (141)
433 KOG1020 Sister chromatid cohes 33.3 4.4E+02 0.0094 33.4 12.0 141 362-515 816-960 (1692)
434 KOG0392 SNF2 family DNA-depend 33.0 3.6E+02 0.0078 33.5 11.1 233 361-599 76-327 (1549)
435 COG1592 Rubrerythrin [Energy p 32.6 25 0.00054 32.9 1.5 25 274-318 134-158 (166)
436 KOG1949 Uncharacterized conser 32.5 7.5E+02 0.016 28.9 12.9 143 448-596 177-330 (1005)
437 PF04821 TIMELESS: Timeless pr 32.4 4.4E+02 0.0095 26.8 10.7 60 362-433 13-72 (266)
438 PF11864 DUF3384: Domain of un 32.2 7.3E+02 0.016 27.4 18.2 108 377-496 5-117 (464)
439 PF08506 Cse1: Cse1; InterPro 31.5 4.2E+02 0.009 28.4 10.8 213 376-592 110-370 (370)
440 cd03565 VHS_Tom1 VHS domain fa 31.3 2.7E+02 0.0059 25.3 8.1 72 568-639 38-115 (141)
441 cd00197 VHS_ENTH_ANTH VHS, ENT 31.3 3.4E+02 0.0074 23.3 10.4 71 361-431 36-113 (115)
442 PLN02400 cellulose synthase 31.1 29 0.00064 41.8 2.1 46 275-320 37-89 (1085)
443 PF10571 UPF0547: Uncharacteri 30.4 27 0.00059 21.9 0.9 8 277-284 3-10 (26)
444 COG3492 Uncharacterized protei 30.3 25 0.00054 28.9 0.9 13 295-307 42-54 (104)
445 TIGR01206 lysW lysine biosynth 30.1 29 0.00063 26.0 1.2 33 274-321 2-34 (54)
446 PF11864 DUF3384: Domain of un 30.0 7.9E+02 0.017 27.1 18.4 256 363-635 28-326 (464)
447 COG5656 SXM1 Importin, protein 29.9 9.3E+02 0.02 28.3 13.2 132 361-494 407-550 (970)
448 COG2176 PolC DNA polymerase II 29.9 43 0.00093 40.6 3.1 41 270-322 910-952 (1444)
449 KOG1952 Transcription factor N 29.7 39 0.00084 39.3 2.6 45 273-317 190-244 (950)
450 PF12231 Rif1_N: Rap1-interact 29.6 5.1E+02 0.011 27.7 11.2 178 413-596 2-203 (372)
451 PF06012 DUF908: Domain of Unk 28.8 1.8E+02 0.0039 30.6 7.4 75 502-576 238-324 (329)
452 cd08329 CARD_BIRC2_BIRC3 Caspa 28.5 1.7E+02 0.0037 24.6 5.8 61 49-110 8-69 (94)
453 PF06012 DUF908: Domain of Unk 28.3 1.9E+02 0.0042 30.3 7.6 75 461-535 238-324 (329)
454 cd00729 rubredoxin_SM Rubredox 28.0 33 0.00071 22.9 1.1 10 310-319 19-28 (34)
455 KOG2199 Signal transducing ada 27.8 2.3E+02 0.005 30.3 7.6 72 568-639 45-118 (462)
456 PF06685 DUF1186: Protein of u 27.7 6.5E+02 0.014 25.4 12.3 73 483-566 70-153 (249)
457 PF12830 Nipped-B_C: Sister ch 27.6 1.7E+02 0.0036 28.0 6.3 68 529-601 10-78 (187)
458 KOG1609 Protein involved in mR 27.5 38 0.00082 35.2 2.1 49 274-322 78-136 (323)
459 PF10521 DUF2454: Protein of u 27.2 3.8E+02 0.0083 27.4 9.4 70 528-597 120-203 (282)
460 KOG2549 Transcription initiati 26.9 5.1E+02 0.011 29.1 10.4 144 361-514 206-369 (576)
461 PF00619 CARD: Caspase recruit 26.9 3.3E+02 0.0071 21.7 7.6 63 50-113 2-65 (85)
462 KOG4713 Cyclin-dependent kinas 26.8 88 0.0019 29.2 3.9 46 61-106 135-180 (189)
463 PF14663 RasGEF_N_2: Rapamycin 26.6 1.7E+02 0.0036 25.6 5.6 37 569-606 9-45 (115)
464 PF09538 FYDLN_acid: Protein o 26.3 36 0.00077 29.5 1.3 12 274-285 9-20 (108)
465 PF01417 ENTH: ENTH domain; I 26.2 2.3E+02 0.0051 24.9 6.7 95 542-641 18-123 (125)
466 cd08330 CARD_ASC_NALP1 Caspase 26.0 3.1E+02 0.0068 22.3 6.8 57 52-109 3-60 (82)
467 TIGR01562 FdhE formate dehydro 25.9 21 0.00046 37.0 -0.2 44 274-318 184-233 (305)
468 PLN03205 ATR interacting prote 25.8 2.2E+02 0.0048 30.5 7.1 111 530-641 326-448 (652)
469 PRK14892 putative transcriptio 25.1 60 0.0013 27.6 2.4 39 269-321 16-54 (99)
470 smart00834 CxxC_CXXC_SSSS Puta 24.8 44 0.00096 22.8 1.3 33 273-319 4-36 (41)
471 PF00096 zf-C2H2: Zinc finger, 24.8 24 0.00051 20.7 -0.1 13 275-287 1-13 (23)
472 PF13811 DUF4186: Domain of un 24.8 49 0.0011 28.5 1.8 21 286-306 64-86 (111)
473 PRK03564 formate dehydrogenase 24.6 29 0.00062 36.1 0.4 44 273-317 186-234 (309)
474 PF06906 DUF1272: Protein of u 24.6 80 0.0017 23.7 2.6 26 293-321 28-53 (57)
475 PF03130 HEAT_PBS: PBS lyase H 24.5 52 0.0011 20.5 1.5 26 461-496 1-26 (27)
476 KOG0314 Predicted E3 ubiquitin 23.9 44 0.00095 36.4 1.7 65 269-335 214-282 (448)
477 PRK04023 DNA polymerase II lar 23.7 72 0.0016 38.2 3.4 47 273-322 625-676 (1121)
478 cd03572 ENTH_epsin_related ENT 23.6 1.6E+02 0.0035 26.2 4.9 30 611-640 39-68 (122)
479 PF12397 U3snoRNP10: U3 small 23.2 5E+02 0.011 22.5 8.8 66 528-598 7-75 (121)
480 PF12074 DUF3554: Domain of un 23.2 8.5E+02 0.018 25.4 11.4 233 376-623 1-257 (339)
481 KOG3842 Adaptor protein Pellin 23.1 66 0.0014 32.9 2.6 50 272-321 339-415 (429)
482 PF14631 FancD2: Fanconi anaem 23.0 4.7E+02 0.01 33.5 10.5 108 444-556 430-542 (1426)
483 KOG4231 Intracellular membrane 23.0 58 0.0013 35.8 2.3 62 495-556 337-399 (763)
484 PF07923 N1221: N1221-like pro 22.8 1.4E+02 0.003 30.9 5.1 56 360-415 58-127 (293)
485 PF12231 Rif1_N: Rap1-interact 22.6 7.8E+02 0.017 26.3 11.0 134 499-638 59-203 (372)
486 PF10497 zf-4CXXC_R1: Zinc-fin 22.6 79 0.0017 27.2 2.7 27 293-319 37-71 (105)
487 KOG2932 E3 ubiquitin ligase in 22.6 31 0.00067 35.2 0.2 43 275-320 91-134 (389)
488 PF14663 RasGEF_N_2: Rapamycin 22.4 1.6E+02 0.0034 25.8 4.6 39 528-566 9-47 (115)
489 KOG0883 Cyclophilin type, U bo 22.4 46 0.001 35.1 1.4 34 271-304 98-135 (518)
490 PF11791 Aconitase_B_N: Aconit 22.1 1.1E+02 0.0023 28.3 3.5 47 570-627 96-142 (154)
491 cd08324 CARD_NOD1_CARD4 Caspas 22.1 4.5E+02 0.0098 21.7 6.8 74 52-134 3-76 (85)
492 PF12726 SEN1_N: SEN1 N termin 21.7 8.3E+02 0.018 28.8 11.9 152 487-639 442-608 (727)
493 PF07539 DRIM: Down-regulated 21.6 5.4E+02 0.012 23.4 8.1 112 484-606 15-133 (141)
494 COG5183 SSM4 Protein involved 21.4 81 0.0018 36.6 3.1 51 272-322 10-68 (1175)
495 smart00132 LIM Zinc-binding do 21.3 63 0.0014 21.3 1.6 36 276-320 1-38 (39)
496 PF09889 DUF2116: Uncharacteri 21.2 54 0.0012 25.1 1.2 15 308-322 2-16 (59)
497 KOG2169 Zn-finger transcriptio 21.1 83 0.0018 36.4 3.3 67 270-336 302-372 (636)
498 PF04642 DUF601: Protein of un 21.1 5.1E+02 0.011 25.9 8.0 54 21-74 128-181 (311)
499 cd08050 TAF6 TATA Binding Prot 20.5 6.6E+02 0.014 26.6 9.8 140 448-596 181-339 (343)
500 PRK01343 zinc-binding protein; 20.4 74 0.0016 24.1 1.8 35 274-308 9-43 (57)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=5.1e-28 Score=290.35 Aligned_cols=279 Identities=24% Similarity=0.226 Sum_probs=254.0
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch
Q 040749 361 KEEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~ 437 (643)
...+..+++.|.++ +++.|+.|+..|+.+++.++++|..|++ .|+||.|+.+|++++..++++|+.+|.||+.++++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n 91 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL 91 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence 57899999999976 7899999999999999999999999996 89999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc---ccchhhhh-ccCChHHHHHHhccCCh---hhHHHHHHHH
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML---DENKITIG-LSDGIPPLVDLLQNGTI---RGKKDAVTAL 510 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~-~~g~i~~Lv~lL~~~~~---~~~~~A~~aL 510 (643)
+..|+..|+|++|+++|++++++++++|+++|++|+.. +.++..|+ ..|+||+|+.++++++. .++..|+.+|
T Consensus 92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL 171 (2102)
T PLN03200 92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL 171 (2102)
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999976 44565655 58999999999998752 3456778999
Q ss_pred HHhccCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCC-hHHHHH
Q 040749 511 FNLSLNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGT-PKNKEC 587 (643)
Q Consensus 511 ~nLs~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~ 587 (643)
+||+.+++++.+ ++++|+|+.|+.+|.++++.++..|+.+|.+++.+ ++++..+++.|+|+.|+++|++++ +.+|++
T Consensus 172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~ 251 (2102)
T PLN03200 172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE 251 (2102)
T ss_pred HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence 999999999865 68999999999999999999999999999988875 779999999999999999998754 689999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC---------HHHHHHHHHHHHHHHh
Q 040749 588 ATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGT---------SRAQRKANALLQLISK 639 (643)
Q Consensus 588 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~---------~~~k~~A~~lL~~L~~ 639 (643)
|+++|.+||+++++.+..+++.|+++.|+.++.+.+ ...++.|.+.|.++++
T Consensus 252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999997544 3458999999999886
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=7.9e-27 Score=280.18 Aligned_cols=281 Identities=23% Similarity=0.287 Sum_probs=250.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
+.++++.|+++|.+++.+.|..|++.|+++++.+++++..|+++|+||.|+++|++++..++++|+++|.|++.++++..
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999877655
Q ss_pred HHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-------------------------------------hh
Q 040749 440 LIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-------------------------------------IT 481 (643)
Q Consensus 440 ~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-------------------------------------~~ 481 (643)
.++ ..|++++|+++|+++++++++.|+++|++|+...+.. ..
T Consensus 524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 544 7899999999999999999999999999996322111 01
Q ss_pred -hhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC--C
Q 040749 482 -IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT--H 557 (643)
Q Consensus 482 -i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~--~ 557 (643)
....|+++.|+.++++++...++.|+++|.|++.. ++++..++..|+|++|+.+|...+.+++.+|+++|.+|+. +
T Consensus 604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~ 683 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK 683 (2102)
T ss_pred hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence 11368999999999999999999999999999875 4456779999999999999999999999999999999985 4
Q ss_pred hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
.+.+..+++.|+|+.|+++|.+.+...++.|+.+|.+++... +....+.+.|+++.|++++++|++++|+.|.++|..|
T Consensus 684 ~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L 762 (2102)
T PLN03200 684 ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL 762 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 556677889999999999999999999999999999999865 4567777899999999999999999999999999998
Q ss_pred Hhhc
Q 040749 638 SKSE 641 (643)
Q Consensus 638 ~~~~ 641 (643)
+++.
T Consensus 763 ~~~~ 766 (2102)
T PLN03200 763 LKHF 766 (2102)
T ss_pred HhCC
Confidence 8754
No 3
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=8.4e-26 Score=224.25 Aligned_cols=276 Identities=24% Similarity=0.357 Sum_probs=258.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
.++..|+..+.++..++|+.++.+|.+|+.- .+||..|+..|++.+|.++-++.|..+|.++..+|.|+....+||..+
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L 204 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL 204 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 4577788888888889999999999999955 899999999999999999888999999999999999999999999999
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccC--ChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD--GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
+.+|++|.|+.++++++.++++++..++.+++.+..+|+.+++.+ .+|.||+++.++++++|-.|..||.||++..+-
T Consensus 205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y 284 (550)
T KOG4224|consen 205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY 284 (550)
T ss_pred hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence 999999999999999999999999999999999999999999866 999999999999999999999999999999999
Q ss_pred hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHHHHHHHHHhcC
Q 040749 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECATAVLLELGAN 598 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~ 598 (643)
...++++|.+|.++++|+++.....-+.+.++.|++-++-+..-|+++|++.+|+++|+.++ .+.+-+|+.+|++|+..
T Consensus 285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 99999999999999999988888888889999999999999999999999999999999876 55899999999999987
Q ss_pred CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 599 NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 599 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
...++..+.+.|++|.|.+++.+|.-.+|.....++..|.
T Consensus 365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 8888899999999999999999999999988888887764
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-25 Score=223.28 Aligned_cols=278 Identities=26% Similarity=0.329 Sum_probs=256.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
.+++..+.++-++.+.-+|+.+...|.++. +..+||..++.+|++|.||.+++++|..+|+.+.+++.|++.+..+|+.
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 366777888667888999999999999999 7899999999999999999999999999999999999999999999999
Q ss_pred HHhcC--ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc
Q 040749 441 IAQQG--AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 441 i~~~g--~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 518 (643)
+++++ .++.|++++.++++.++-.|.-+|.+|+.+.+++..|++.|.+|.+|++|+++........+.++.|++.++-
T Consensus 245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl 324 (550)
T KOG4224|consen 245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL 324 (550)
T ss_pred HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence 99777 9999999999999999999999999999999999999999999999999998877777778899999999999
Q ss_pred chHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 519 NKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 519 n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
|-..++++|.+.+|+.+|..+ +++++.+|..+|+||+. ++.++..|.+.|+|+.+.+++.++.-.+++.-.+++..|+
T Consensus 325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA 404 (550)
T ss_pred cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence 999999999999999999874 45599999999999987 7788999999999999999999999999998888888887
Q ss_pred cCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 597 ANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 597 ~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
-++ .....+.+.|+++.|+.+..+.+.+++.+|...|-+|+..
T Consensus 405 l~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 405 LND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred hcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 654 4567788999999999999999999999999999999854
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.3e-25 Score=235.15 Aligned_cols=277 Identities=23% Similarity=0.269 Sum_probs=250.0
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-HH
Q 040749 362 EEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-KR 439 (643)
Q Consensus 362 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~ 439 (643)
+.++.+|+.|. ..++..|..|+|+|.+++..+.+.-..++++|++|.|+.+|.+++..+++.|+++|+|++.+... |.
T Consensus 109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd 188 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD 188 (514)
T ss_pred CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence 67999999998 45699999999999999999999999999999999999999999999999999999999997655 78
Q ss_pred HHHhcCChHHHHHHhcCCCH-HHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749 440 LIAQQGAIPAIIEILQSGST-EARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 517 (643)
.+...|++++|+.++...+. ....++.|+|.||+........+.. ..++|.|..++.+.++.+..+|++||.+|+.++
T Consensus 189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 88899999999999987764 7888999999999977654444444 688999999999999999999999999999776
Q ss_pred cchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHH
Q 040749 518 ANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVLLE 594 (643)
Q Consensus 518 ~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~ 594 (643)
..+.. ++++|+++.|+++|...+..++..|+.++.|++. +....+.++..|+++.|..++. +.....+..|+|++.|
T Consensus 269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN 348 (514)
T KOG0166|consen 269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN 348 (514)
T ss_pred hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 66555 6789999999999999999999999999999977 5556778889999999999998 4455689999999999
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
++.++.+..+.+++.|++|.|+.++.++.-+.|+.|++++.++.
T Consensus 349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999875
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.5e-23 Score=219.79 Aligned_cols=282 Identities=21% Similarity=0.259 Sum_probs=248.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCCh-HHHHHHHHHHHHhcCCcchH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~-~~~~~a~~~L~nLs~~~~~k 438 (643)
+.+.++.++++|.|++.+++.+|+++|++++.+++..|+.+...|++++|+.++...+. ....++.|+|.||+......
T Consensus 150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~ 229 (514)
T KOG0166|consen 150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS 229 (514)
T ss_pred cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence 56889999999999999999999999999999999999999999999999999998776 77899999999999865322
Q ss_pred HHH-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 439 RLI-AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 439 ~~i-~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
..+ .-..++|.|..+|.+.++++...|+|+|.+|+.....+ ..+.+.|++|.|+.+|.+.+..++..|++++.|+...
T Consensus 230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG 309 (514)
T ss_pred CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence 222 23568999999999999999999999999999665444 4555799999999999999999999999999999987
Q ss_pred CcchHH-HHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 040749 517 QANKAR-AIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL 593 (643)
Q Consensus 517 ~~n~~~-lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 593 (643)
.+...+ +++.|+++.|..++.. +...++.+|++++.|++. +.+..++++++|.+|.|+.+|.++.-+.|..|+|++.
T Consensus 310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs 389 (514)
T KOG0166|consen 310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS 389 (514)
T ss_pred cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence 777655 7789999999999984 566689999999999965 7888999999999999999999999999999999999
Q ss_pred HHhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 594 ELGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 594 ~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
|++.. +++....+++.|++++|+.++.-.+.+.-..+...|.++-+..
T Consensus 390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~ 438 (514)
T KOG0166|consen 390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG 438 (514)
T ss_pred hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence 99865 4677788899999999999998888888888888888886653
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.89 E-value=2e-22 Score=198.73 Aligned_cols=279 Identities=20% Similarity=0.218 Sum_probs=243.0
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-
Q 040749 360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN- 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~- 437 (643)
+.+.++.+++++.+ ...-.|.+|+|+|.+++......-..++++|++|.++++|.+++.++++.++|+|+|++.+.+.
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~ 191 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC 191 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence 45789999999964 4444577999999999987777777788999999999999999999999999999999998766
Q ss_pred HHHHHhcCChHHHHHHhcCCC--HHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749 438 KRLIAQQGAIPAIIEILQSGS--TEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~--~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 514 (643)
|..+...|++.+++.+|.+.. .....++.|+|.||+........-.. +.++|.|..|+.+.++++..+|++||..|+
T Consensus 192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls 271 (526)
T COG5064 192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS 271 (526)
T ss_pred HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence 777779999999999998764 47788999999999865332221111 467999999999999999999999999999
Q ss_pred cCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749 515 LNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL 592 (643)
Q Consensus 515 ~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 592 (643)
..+..+.. +++.|..+.|+++|.+++..++.-|+..+.|+... ....+.++..|+++.+-.+|.+.....|..|+|.+
T Consensus 272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi 351 (526)
T COG5064 272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI 351 (526)
T ss_pred cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence 87766655 67899999999999999999999999999999874 44566778899999999999888788999999999
Q ss_pred HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
.++..++.+..+.+++.+.+|+|+.++..-.-.+|+.|.+.+.+..
T Consensus 352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999988764
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.88 E-value=5.9e-22 Score=195.47 Aligned_cols=278 Identities=19% Similarity=0.209 Sum_probs=245.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCC--c
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSID--E 435 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~--~ 435 (643)
+.+++|.++++|.+.+.+++.+|+|+|.+++.+++..|+.+.+.|++.+++.+|.+. +..+..++.|+|.||+.. +
T Consensus 155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP 234 (526)
T COG5064 155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP 234 (526)
T ss_pred eCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence 568899999999999999999999999999999999999999999999999988766 457889999999999973 2
Q ss_pred -chHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchh-hhhccCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749 436 -SNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI-TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513 (643)
Q Consensus 436 -~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 513 (643)
.+...| ..++|.|.+++.+-++++...|+|++.+|+..+..+. .+...|..+.||.+|.+.+..++..|++.+.|+
T Consensus 235 ~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI 312 (526)
T COG5064 235 PPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI 312 (526)
T ss_pred CCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence 345555 4579999999999999999999999999997765444 455689999999999999999999999999999
Q ss_pred ccCCcchH-HHHHcCChHHHHHHhccCChhhHHHHHHHHHHH-hCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749 514 SLNQANKA-RAIDAGIVLPLMNLLEERNLGMVDEALSILLLL-ATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV 591 (643)
Q Consensus 514 s~~~~n~~-~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 591 (643)
....+.+. .+++.|+++.+..+|.++...++.+|++.+.|+ +.+.+..+++++++.+|.|+.+|.......+..|+|+
T Consensus 313 VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWA 392 (526)
T COG5064 313 VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWA 392 (526)
T ss_pred eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 88666654 477899999999999998889999999999999 4578889999999999999999998888999999999
Q ss_pred HHHHhcCC---HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 592 LLELGANN---SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 592 L~~L~~~~---~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+.+..+++ |.....++..|++.+|..++.-.+.++-+-|...++++-+
T Consensus 393 isNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk 443 (526)
T COG5064 393 ISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK 443 (526)
T ss_pred HHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence 99997653 6677888899999999999998888887888887777644
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.80 E-value=3.2e-20 Score=149.63 Aligned_cols=72 Identities=53% Similarity=0.990 Sum_probs=63.4
Q ss_pred CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN 342 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 342 (643)
+|++|.||||+++|.|||+++|||||||.+|++|+..++.+||.|+++++..+++||..||..|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999977899999999999999999999999999999875
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.79 E-value=2.1e-17 Score=185.28 Aligned_cols=255 Identities=19% Similarity=0.243 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc
Q 040749 376 LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ 455 (643)
Q Consensus 376 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~ 455 (643)
....+-++..|.+++ +++.+...+.+.|.|+.|+++|.+++.++...+++.|.+||...+||..|++.|+++.|++++.
T Consensus 263 eqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~ 341 (708)
T PF05804_consen 263 EQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP 341 (708)
T ss_pred HHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence 444567788899999 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHH
Q 040749 456 SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNL 535 (643)
Q Consensus 456 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~l 535 (643)
+++.+++..+..+|+|||.+++.|..+++.|++|.|+.+|.+++ .+..++.+|+|||..++++..+...+++|.++++
T Consensus 342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~ 419 (708)
T PF05804_consen 342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM 419 (708)
T ss_pred CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999998654 5567999999999999999999999999999998
Q ss_pred hcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHH
Q 040749 536 LEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEH 614 (643)
Q Consensus 536 L~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~ 614 (643)
+.. +++.+..++++++.||+.++.+.+.+.+.++++.|++..-.... ...+.++.|++.+++.....+ .+.+..
T Consensus 420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f--~~~i~~ 494 (708)
T PF05804_consen 420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELF--VDFIGD 494 (708)
T ss_pred HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHH--HHHHHH
Confidence 765 56667778899999999999999999998999999987754332 334578999999886544443 347888
Q ss_pred HHHHhhcC-CHHHHHHHHHHHHHHH
Q 040749 615 LIQLTEGG-TSRAQRKANALLQLIS 638 (643)
Q Consensus 615 L~~ll~~g-~~~~k~~A~~lL~~L~ 638 (643)
|..++.++ ++...-.+.++|.+|.
T Consensus 495 L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 495 LAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 88888776 6677778888888774
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.79 E-value=5.4e-17 Score=181.96 Aligned_cols=279 Identities=24% Similarity=0.316 Sum_probs=226.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
..+.++.|+..|.+.+.+....++..|.+|+ -..+|+..|.+.|+||.|++++.+++.+++..++.+|.|||.+++.|.
T Consensus 288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~ 366 (708)
T PF05804_consen 288 NKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS 366 (708)
T ss_pred hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 5678999999999999999999999999999 567899999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCc
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~ 518 (643)
.|+..|++|.|+.+|.+++ .+..+..+|.+||.++++|..+...+++|.++.++-+ ++.++...++.++.||+.++.
T Consensus 367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 9999999999999998654 5677999999999999999999999999999998755 455566666677777777777
Q ss_pred chHHHHHcCChHHHHH----------------------------------------------------------------
Q 040749 519 NKARAIDAGIVLPLMN---------------------------------------------------------------- 534 (643)
Q Consensus 519 n~~~lv~~G~v~~Lv~---------------------------------------------------------------- 534 (643)
|...+.+.|+++.|++
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld 524 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD 524 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence 7666666555554443
Q ss_pred ----------------Hhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 040749 535 ----------------LLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLE 594 (643)
Q Consensus 535 ----------------lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~ 594 (643)
+|.. ..+++.-+++.++..+|.+++....+.+.|.++.|+.++... +.+..-..+.++..
T Consensus 525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ 604 (708)
T PF05804_consen 525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ 604 (708)
T ss_pred HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence 2211 112333334444444445555666677889999999999864 46778888889999
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
+..+.......+.+.+++..|+.++++.|+.+++-|..+|-.+..++
T Consensus 605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD 651 (708)
T ss_pred HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 98886655444556889999999999999999999999999887765
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.70 E-value=4.4e-16 Score=170.73 Aligned_cols=278 Identities=22% Similarity=0.237 Sum_probs=226.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC---cchH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID---ESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~---~~~k 438 (643)
-.++..+.+|.+.++.+|-.|+.-|..+++.+...|..+.+.|+||.||.+|.+...++|.+|+++|.||... ++||
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4688899999999999999999999999999999999999999999999999999999999999999999873 4589
Q ss_pred HHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-------C-------ChhhH
Q 040749 439 RLIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-------G-------TIRGK 503 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-------~-------~~~~~ 503 (643)
..|.+.++|+.++++|+. ++.+++++...+|||||+.|..|..|.. .++..|.+.+-. + +..+.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence 999999999999999986 7899999999999999999888877764 345555544321 1 24567
Q ss_pred HHHHHHHHHhcc-CCcchHHHHH-cCChHHHHHHhcc------CChhhHHHHHHHHHHHhCChh------h---------
Q 040749 504 KDAVTALFNLSL-NQANKARAID-AGIVLPLMNLLEE------RNLGMVDEALSILLLLATHPE------G--------- 560 (643)
Q Consensus 504 ~~A~~aL~nLs~-~~~n~~~lv~-~G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~~------~--------- 560 (643)
.++..+|.|+++ ..+.+.+|.+ .|.|..|+..+.. .+...+++|+-+|.||+..-+ .
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 899999999997 6777888887 8999999999874 577889999999999975222 0
Q ss_pred ------------------HH---------------------HhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCH
Q 040749 561 ------------------RH---------------------KIGQLSFIETLVEYIR-EGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 561 ------------------~~---------------------~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
+. ..+...+|..-..+|. +.++.+.|.++.+|-||+....
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 00 0111223333333444 4568899999999999997653
Q ss_pred ----HHHHHH-HHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 601 ----SFILAA-LQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 601 ----~~~~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
..+..+ .++.+.+.|++++.++++++.+.+..+|++|+..
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD 596 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence 233344 5788999999999999999999999999999754
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=2e-13 Score=135.48 Aligned_cols=277 Identities=18% Similarity=0.233 Sum_probs=229.3
Q ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcch
Q 040749 361 KEEIVSLVEQLS--SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 361 ~~~i~~Lv~~L~--s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~ 437 (643)
..+...++..|. +.+.+.....+..++.-+-.++.||..+++.++.|.+...|... ..++...+.+++..|..+++.
T Consensus 144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi 223 (461)
T KOG4199|consen 144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI 223 (461)
T ss_pred cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence 345666667665 45667777888888888888999999999999999999766654 445778888999998877653
Q ss_pred ----------HHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-h---h
Q 040749 438 ----------KRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-R---G 502 (643)
Q Consensus 438 ----------k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~---~ 502 (643)
...|+..|++..|++.++.+ ++.....+..+|..|+..++.+..|.+.|++..|++++.+.+. . .
T Consensus 224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l 303 (461)
T KOG4199|consen 224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTL 303 (461)
T ss_pred eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence 34567788999999999876 5788889999999999999999999999999999999987433 2 3
Q ss_pred HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc
Q 040749 503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE 579 (643)
Q Consensus 503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~ 579 (643)
.+.++..|..|+.++.++..+++.|+.+.++.++.. .++.+...++.++..||- .|+....+++.|+-...++.|+.
T Consensus 304 ~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka 383 (461)
T KOG4199|consen 304 AKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA 383 (461)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh
Confidence 467788888999999999999999999999999754 788999999999999987 68888889999999999999986
Q ss_pred CC--hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 580 GT--PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 580 ~s--~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
.. ..++.+|++.+.|+..++.+++..++..| ++.|+......++.....|...||-|.
T Consensus 384 hP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG 443 (461)
T KOG4199|consen 384 HPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG 443 (461)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence 43 56799999999999999888887777665 777777777777777777777787663
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.60 E-value=1.1e-15 Score=120.15 Aligned_cols=63 Identities=57% Similarity=1.030 Sum_probs=60.0
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW 337 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 337 (643)
+|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+++++..+++||..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5889999999999999999999999999999987 56899999999999999999999999988
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.59 E-value=5.5e-14 Score=154.47 Aligned_cols=282 Identities=21% Similarity=0.207 Sum_probs=216.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcc
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE--NRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~ 436 (643)
.-++|+.||.+|.+.+.++|++|+.+|++|...+.. |+..|.+.++||.++++|+. .|.++++....+|+||+.+|.
T Consensus 273 qlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~ 352 (717)
T KOG1048|consen 273 QLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA 352 (717)
T ss_pred HhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH
Confidence 357899999999999999999999999999977665 99999999999999999996 599999999999999999987
Q ss_pred hHHHHHhcCChHHHHHHhcCC--------------CHHHHHHHHHHHHhccc-cccchhhhhc-cCChHHHHHHhc----
Q 040749 437 NKRLIAQQGAIPAIIEILQSG--------------STEARENSAAALFSLSM-LDENKITIGL-SDGIPPLVDLLQ---- 496 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~--------------~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~-~g~i~~Lv~lL~---- 496 (643)
-|..|+.. ++..|..-+-.+ ..++-.+++.+|.|++. ..+.+..+.+ .|.|..|+..++
T Consensus 353 lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~ 431 (717)
T KOG1048|consen 353 LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ 431 (717)
T ss_pred HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence 77776543 344444322100 12334455556666554 3445555554 455555554443
Q ss_pred --------------------------------------------------------------------------------
Q 040749 497 -------------------------------------------------------------------------------- 496 (643)
Q Consensus 497 -------------------------------------------------------------------------------- 496 (643)
T Consensus 432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence
Q ss_pred ------------------cCChhhHHHHHHHHHHhccCCc-----chHHH-HHcCChHHHHHHhccCChhhHHHHHHHHH
Q 040749 497 ------------------NGTIRGKKDAVTALFNLSLNQA-----NKARA-IDAGIVLPLMNLLEERNLGMVDEALSILL 552 (643)
Q Consensus 497 ------------------~~~~~~~~~A~~aL~nLs~~~~-----n~~~l-v~~G~v~~Lv~lL~~~~~~~~~~Al~~L~ 552 (643)
+.+....+.++.||.||+.... .+..+ ....+.+.|+++|...+..++..++.+|.
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr 591 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR 591 (717)
T ss_pred eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence 1123334566667777764322 12233 45778999999999999999999999999
Q ss_pred HHhCChhhHHHhhcCCcHHHHHHHHhcCC------hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHH
Q 040749 553 LLATHPEGRHKIGQLSFIETLVEYIREGT------PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSR 625 (643)
Q Consensus 553 ~La~~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~ 625 (643)
||+.+..++..|. .++++.|++.|..+. ..+...++.+|.++...+..+...+.+.++++.|+-+..+. +++
T Consensus 592 Nls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k 670 (717)
T KOG1048|consen 592 NLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPK 670 (717)
T ss_pred hhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHH
Confidence 9999999999888 589999999998643 45677788889999999999999999999999999999875 679
Q ss_pred HHHHHHHHHHHHHhhccC
Q 040749 626 AQRKANALLQLISKSEHL 643 (643)
Q Consensus 626 ~k~~A~~lL~~L~~~~~~ 643 (643)
+-+.|..+|..|..+.||
T Consensus 671 ~~kaAs~vL~~lW~y~eL 688 (717)
T KOG1048|consen 671 EFKAASSVLDVLWQYKEL 688 (717)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998877653
No 16
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.58 E-value=2.7e-14 Score=162.20 Aligned_cols=261 Identities=22% Similarity=0.226 Sum_probs=223.0
Q ss_pred HHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC------------ChHHHHHHHHHHHHhcCCc-chHHHHH-hcC
Q 040749 380 KEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP------------DSKILEHAVTAVLNLSIDE-SNKRLIA-QQG 445 (643)
Q Consensus 380 ~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~------------d~~~~~~a~~~L~nLs~~~-~~k~~i~-~~g 445 (643)
+.|+..|..+++ ++++|..+.+.|++..+-.||.-. +..++..|..+|-||...+ .||..+- ..|
T Consensus 316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg 394 (2195)
T KOG2122|consen 316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG 394 (2195)
T ss_pred HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence 377778888874 689999999999998888876521 2357899999999999854 5666554 689
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccc-c-cchhhhhccCChHHHHHH-hccCChhhHHHHHHHHHHhcc-CCcchH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSML-D-ENKITIGLSDGIPPLVDL-LQNGTIRGKKDAVTALFNLSL-NQANKA 521 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~-~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~-~~~n~~ 521 (643)
++..+|..|.+...++.+..+.+|.|||=. | ..|+.+.+.|.+..|+.. |+.......+..+.|||||+. +.+|+.
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA 474 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA 474 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence 999999999999899999999999999933 3 345666678999999886 456667788899999999986 688999
Q ss_pred HHHH-cCChHHHHHHhcc----CChhhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749 522 RAID-AGIVLPLMNLLEE----RNLGMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL 592 (643)
Q Consensus 522 ~lv~-~G~v~~Lv~lL~~----~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 592 (643)
.|.. .|++..|+.+|.. ....+++.|-+||.|+++ +++.|+.+.+.+++..|+..|.+.+-.+..++++.|
T Consensus 475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL 554 (2195)
T KOG2122|consen 475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL 554 (2195)
T ss_pred hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence 9887 8999999999975 345778999999999865 778899999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
|||...+++..+++++.|+++.|..|+.+.+..+-+-++..|++|-.+.
T Consensus 555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 9999999999999999999999999999999998888888888886543
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.58 E-value=2.3e-13 Score=136.29 Aligned_cols=193 Identities=23% Similarity=0.314 Sum_probs=173.5
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH
Q 040749 360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k 438 (643)
+.+.++.|+..|. +.++.+|..|+.++.+.+ ..+.++..|.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+|+
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 4577899999999 568999999999999987 67899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 439 RLIAQQGAIPAIIEILQSG--STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
..|- .+++.+++.+.+. +.+.+..+..+|.+|+..++++..+. +.++.++.+|.+|+...+..++++|.||+.+
T Consensus 89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 9883 3688888866554 56888999999999999888877775 4799999999999999999999999999999
Q ss_pred CcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 040749 517 QANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATH 557 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~ 557 (643)
+.+...++.++++..++.++.. .+.++.-.++.++.|+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987 4678889999999999764
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=8.7e-13 Score=131.07 Aligned_cols=264 Identities=18% Similarity=0.231 Sum_probs=219.9
Q ss_pred cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC--CChHHHHHHHHHHHHhcC-CcchHHHHHhcCChH
Q 040749 372 SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY--PDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIP 448 (643)
Q Consensus 372 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~ 448 (643)
.+++...-.+++..|..+....|+.+ ++.+...++.+|.. ++.++-...+..+..-+. ++.||..+++.++++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~qpdl~----da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~ 192 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQPDLF----DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE 192 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCCcchh----ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence 35667777899999999987666544 55677788887764 466666666676766665 788999999999999
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHhccccccchh----------hhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 040749 449 AIIEILQS-GSTEARENSAAALFSLSMLDENKI----------TIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 449 ~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~----------~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 516 (643)
.+...|.. |..++...+.+++..|..+|+.|. .|+..|++..|++.++-+ ++.....++.+|..|+..
T Consensus 193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 99988764 445677788999999988877665 345567889999999865 678889999999999999
Q ss_pred CcchHHHHHcCChHHHHHHhcc-CCh---hhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc--CChHHHHHHHH
Q 040749 517 QANKARAIDAGIVLPLMNLLEE-RNL---GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE--GTPKNKECATA 590 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~-~~~---~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~ 590 (643)
++.+..+.+.|++..|+..+.+ ++. .+...++..|..|+.+.+.+..|++.|+.+.++.++.. .+|.+.+.++.
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999999999999999987 333 35678899999999999999999999999999998853 57999999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC--HHHHHHHHHHHHHHHh
Q 040749 591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGT--SRAQRKANALLQLISK 639 (643)
Q Consensus 591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~--~~~k~~A~~lL~~L~~ 639 (643)
++..||-..|++...+++.|+-...++.++... ..+|++|.+++|++--
T Consensus 353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887764 4678999999999853
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.53 E-value=5.6e-13 Score=133.53 Aligned_cols=226 Identities=18% Similarity=0.204 Sum_probs=187.4
Q ss_pred HhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch
Q 040749 401 ADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK 479 (643)
Q Consensus 401 ~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k 479 (643)
.+.+.+..|+.+|+. .|+.+++.++.++.|.+..+.++..|.+.|+++.+..+|.++++.++..|..+|.|++.+.+++
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 456678899999985 5899999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhccCChHHHHHHhccC--ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749 480 ITIGLSDGIPPLVDLLQNG--TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 480 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 557 (643)
..|- ..++.+++...+. +..++..++++|.||+..++.+..+. +.++.++.+|..++..++..++.+|.||+.+
T Consensus 89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence 8874 3577777766554 56888999999999998877766654 4799999999999999999999999999999
Q ss_pred hhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHH-------------HHHH-HHHCC-cHHHHHHHhhc
Q 040749 558 PEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSS-------------FILA-ALQYG-VYEHLIQLTEG 621 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~-------------~~~~-~~~~g-~i~~L~~ll~~ 621 (643)
+.....+..++++..++.++... +...-..++.+..++..+-.. .... +.+.+ ..+.|..+..+
T Consensus 165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h 244 (254)
T PF04826_consen 165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH 244 (254)
T ss_pred HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence 99999999999999999999875 567788899999999653211 1111 11222 45667777777
Q ss_pred CCHHHHHHH
Q 040749 622 GTSRAQRKA 630 (643)
Q Consensus 622 g~~~~k~~A 630 (643)
.++++|++.
T Consensus 245 ~d~ev~~~v 253 (254)
T PF04826_consen 245 PDPEVKEQV 253 (254)
T ss_pred CCHHHhhhc
Confidence 777777664
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.42 E-value=4.7e-11 Score=132.58 Aligned_cols=276 Identities=17% Similarity=0.189 Sum_probs=221.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
....+.+...|.++++.++.-+++.|+.++.++......+.+.+.++.++.+|..+|..+...|+.+|.+++.++.+-..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 35678888999999999999999999999987777777788899999999999999999999999999999998888888
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
+...+.+..|..++...+..+|..+..++.+++.. ++....+...|.++.++..+.+++.-++.+|+..|..|+..+.+
T Consensus 156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g 235 (503)
T PF10508_consen 156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG 235 (503)
T ss_pred HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence 88888899999999887888888899999999755 45556666789999999999998889999999999999999999
Q ss_pred hHHHHHcCChHHHHHHhccC--Ch---hh-HHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749 520 KARAIDAGIVLPLMNLLEER--NL---GM-VDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL 592 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~--~~---~~-~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 592 (643)
...+.+.|+++.|..++.+. ++ .+ .--.+....+++.. +..... .-..++..+.+++.+.++..+..|+.+|
T Consensus 236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtl 314 (503)
T PF10508_consen 236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTL 314 (503)
T ss_pred HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 99999999999999999762 22 11 22234666777763 221111 1134566777778888999999999999
Q ss_pred HHHhcCCHHHHHHHHH-CC----cHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 593 LELGANNSSFILAALQ-YG----VYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 593 ~~L~~~~~~~~~~~~~-~g----~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
..+|+........... .+ ++........+++..+|.++...|..+
T Consensus 315 g~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 315 GQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 9999765433333133 33 355555666778888999998888877
No 21
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.41 E-value=2e-12 Score=147.26 Aligned_cols=226 Identities=20% Similarity=0.204 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch-HHHHHhcCChHHHHH
Q 040749 376 LEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN-KRLIAQQGAIPAIIE 452 (643)
Q Consensus 376 ~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~-k~~i~~~g~i~~Lv~ 452 (643)
...++.|..+|-+|...+..|+..+.. .|++..+|..|.+...+++...+.+|.||+.. |.| |..+.+.|-+..|+.
T Consensus 365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~ 444 (2195)
T KOG2122|consen 365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA 444 (2195)
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence 356889999999999999999988875 79999999999998889999999999999984 444 677778999999988
Q ss_pred H-hcCCCHHHHHHHHHHHHhcccc-ccchhhhhc-cCChHHHHHHhcc----CChhhHHHHHHHHHHhcc----CCcchH
Q 040749 453 I-LQSGSTEARENSAAALFSLSML-DENKITIGL-SDGIPPLVDLLQN----GTIRGKKDAVTALFNLSL----NQANKA 521 (643)
Q Consensus 453 l-L~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~-~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~----~~~n~~ 521 (643)
+ |...........+.+||||+.+ .+||..|.. .|++..||.+|.- ....+.+.|-++|.|.+. +.+.|.
T Consensus 445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ 524 (2195)
T KOG2122|consen 445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ 524 (2195)
T ss_pred HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence 4 4555556777889999999955 689999998 7999999999964 356777889999999875 344566
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh-CChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA-THPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.+.+.+++..|+++|.+.+-.++.++|++||||+ .+++.++.+++.|+|+.|-.++++.....-+-++++|.||..+.+
T Consensus 525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 6778999999999999999999999999999995 589999999999999999999999999999999999999987765
Q ss_pred H
Q 040749 601 S 601 (643)
Q Consensus 601 ~ 601 (643)
.
T Consensus 605 A 605 (2195)
T KOG2122|consen 605 A 605 (2195)
T ss_pred h
Confidence 4
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.26 E-value=5.6e-10 Score=114.53 Aligned_cols=281 Identities=16% Similarity=0.137 Sum_probs=217.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC----C---hHHHHHHHHHHHHhcC
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP----D---SKILEHAVTAVLNLSI 433 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~----d---~~~~~~a~~~L~nLs~ 433 (643)
.+.+..|.+..+|++.++-.+..+.|++++..|.++|..+.+.|+-..++..|+.- + .+....+...|.|-..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 57788888888999899999999999999999999999999999977777777642 2 2445566778888877
Q ss_pred Cc-chHHHHHhcCChHHHHHHhcCC----------------------------------------------CHHHHHHHH
Q 040749 434 DE-SNKRLIAQQGAIPAIIEILQSG----------------------------------------------STEARENSA 466 (643)
Q Consensus 434 ~~-~~k~~i~~~g~i~~Lv~lL~~~----------------------------------------------~~e~~~~Aa 466 (643)
+. ..+.+.++.|+++.|...+.-+ .++.++-..
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 55 4588888999999777655211 112233444
Q ss_pred HHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHH-------HHHHHHHhccCCcchHHHHHcC-ChHHHHHHhc
Q 040749 467 AALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKD-------AVTALFNLSLNQANKARAIDAG-IVLPLMNLLE 537 (643)
Q Consensus 467 ~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~-------A~~aL~nLs~~~~n~~~lv~~G-~v~~Lv~lL~ 537 (643)
.+|...+.++..|..+++.|.+..++++++. .+..-+.+ ++....-|...++.-.++-..+ .+..++.-+.
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~ 325 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR 325 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence 5566666777778888888999999999876 33222333 3333333445566666666655 7788888888
Q ss_pred cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-----CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Q 040749 538 ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-----GTPKNKECATAVLLELGANNSSFILAALQYGVY 612 (643)
Q Consensus 538 ~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i 612 (643)
+.+..+...+.-+++|++++.+....+++.+.+..|+..+.. |+-+.+..++++|.++..-- .+...+...|+.
T Consensus 326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvt 404 (604)
T KOG4500|consen 326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVT 404 (604)
T ss_pred CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchH
Confidence 889999999999999999999999999999999999998863 55677888999999998643 355677789999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHhhcc
Q 040749 613 EHLIQLTEGGTSRAQRKANALLQLISKSEH 642 (643)
Q Consensus 613 ~~L~~ll~~g~~~~k~~A~~lL~~L~~~~~ 642 (643)
+.++..++...|.++.+-...|+++++.+|
T Consensus 405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 405 EAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 999999999999999999999999987664
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.23 E-value=1.4e-09 Score=120.94 Aligned_cols=272 Identities=17% Similarity=0.163 Sum_probs=213.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH-HHh
Q 040749 365 VSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL-IAQ 443 (643)
Q Consensus 365 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~-i~~ 443 (643)
+.++..|.+.+.+.-..++..|..+.... ..... ..+..+.|...|.++++.++..++..|.+++.++..... +.+
T Consensus 41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 41 PVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 44778888888887778888888887432 22222 456788999999999999999999999999987766444 448
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch-HH
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK-AR 522 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~ 522 (643)
.+.++.++..|.+++.++...|+.+|.+|+..+.....+...+.+..|..++...+..++..+..++.+++..++.. ..
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~ 197 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA 197 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 89999999999999999999999999999988877777888888999999998878788888999999998765554 45
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--Ch-HH---HHHHHHHHHHHh
Q 040749 523 AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TP-KN---KECATAVLLELG 596 (643)
Q Consensus 523 lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~-~~---~e~A~~~L~~L~ 596 (643)
+.+.|+++.++..|.+.|.-++..|+.+|..|+.++.|.+.+.+.|+++.|..++... +| -. --..+....+++
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la 277 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA 277 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence 6679999999999998888889999999999999999999999999999999999753 34 11 111223344455
Q ss_pred cCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 597 ANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 597 ~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
...+..+... -...+..|.+++.++++..+..|...+..+...
T Consensus 278 ~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 278 RVSPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred hcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence 5443322211 134566777778888888888888888877643
No 24
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.19 E-value=5.8e-10 Score=98.86 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=109.7
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.+++.|+++.|++++.+.+..++..++.+|.+++.. ++.+..+.+.|+++.+++++.+.++.++..|+++|.+++...+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 467899999999999998899999999999999997 8888899999999999999999999999999999999999888
Q ss_pred HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
.....+.+.|+++.|..++.+++.++++.|.++|.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 77888889999999999999999999999999999886
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=3.2e-10 Score=100.56 Aligned_cols=116 Identities=27% Similarity=0.331 Sum_probs=106.2
Q ss_pred hhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh-h
Q 040749 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP-E 559 (643)
Q Consensus 482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~ 559 (643)
+.+.|+++.|+.+|.+++...+..++.+|.+++.. ++....+++.|+++.++++|.++++.++..|+++|.+|+.+. .
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~ 82 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED 82 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence 45689999999999999999999999999999987 677888899999999999999999999999999999999866 5
Q ss_pred hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
.+..+.+.|+++.+++++.+.+..+++.|+++|.+||.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 56667888999999999999999999999999999974
No 26
>PRK09687 putative lyase; Provisional
Probab=99.15 E-value=4.3e-09 Score=107.84 Aligned_cols=224 Identities=18% Similarity=0.094 Sum_probs=162.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHh-CCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQL-LPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l-L~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
..+..+..++.+.++.+|..|++.|..+..... . ...+++.|..+ +..+++.++..|+.+|+++.......
T Consensus 54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-- 125 (280)
T PRK09687 54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-- 125 (280)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence 456667777788888888888888888763211 0 12256777766 56678888888888888875432211
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
...++..+...+.+.++.+|..++.+|..+ +...+++.|+.+|.+.++.++..|+.+|.++....+
T Consensus 126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~-- 191 (280)
T PRK09687 126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP-- 191 (280)
T ss_pred --chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--
Confidence 112445566677777888888888888654 334578999999988888899999999988832222
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.+++.|+.+|.+.+..++..|+..|..+-. ..+++.|++.+.+++ .+..|+.+|..+.. +
T Consensus 192 ------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--~ 251 (280)
T PRK09687 192 ------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--K 251 (280)
T ss_pred ------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--H
Confidence 356778888888888899888888877532 357889999988755 55667777777654 1
Q ss_pred HHHHHHHHCCcHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 040749 601 SFILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQL 636 (643)
Q Consensus 601 ~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~ 636 (643)
-+++.|..++. +.+++++.+|.+.|..
T Consensus 252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred ---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 37899999996 7899999999988753
No 27
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=9.6e-10 Score=105.20 Aligned_cols=78 Identities=32% Similarity=0.521 Sum_probs=73.1
Q ss_pred CCCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749 267 LSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK 344 (643)
Q Consensus 267 ~~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 344 (643)
...++|+.++|.|++++|++||++|+|-||+|.-|.++++.-+...|.|+.+|+...++||.+|+..|..|...|.|.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~ 281 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA 281 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence 446789999999999999999999999999999999999986668999999999999999999999999999998875
No 28
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.13 E-value=3.7e-11 Score=85.22 Aligned_cols=39 Identities=31% Similarity=0.842 Sum_probs=31.3
Q ss_pred cccCcccccCceecCCCCccchHHHHHHHhcCC---CCCCCc
Q 040749 277 CPITLEIMRDPVIIASGQTFERESVQKWFDSNH---RTCPKT 315 (643)
Q Consensus 277 CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~---~~cP~~ 315 (643)
||||+++|+|||+++|||+||+.||.+|++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998543 368876
No 29
>PRK09687 putative lyase; Provisional
Probab=99.10 E-value=4.6e-09 Score=107.66 Aligned_cols=226 Identities=14% Similarity=0.031 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
.-.+..|+..|.+.+..++..|+..|..+.. ..+++.+..++.++++.++..|+++|+.|...+..
T Consensus 22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence 4568899999999999999999999987752 22677888899999999999999999998653322
Q ss_pred HHhcCChHHHHHH-hcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 441 IAQQGAIPAIIEI-LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 441 i~~~g~i~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
...+++.|..+ ++..++.++..|+.+|.++....... ...++..+...+.+.++.++..|+.+|.++.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~----- 156 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN----- 156 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence 22356777776 56778999999999999986432211 2235666777788889999999999997553
Q ss_pred hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
...+++.|+.+|.++++.++..|+..|..+... ...+++.|+.++.+.++.+|..|+..|..+..
T Consensus 157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-- 221 (280)
T PRK09687 157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-- 221 (280)
T ss_pred -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence 223789999999999999999999999988332 12567889999999999999999999977532
Q ss_pred HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
+ .+++.|+..+.+++. +..|...|..+
T Consensus 222 ~---------~av~~Li~~L~~~~~--~~~a~~ALg~i 248 (280)
T PRK09687 222 K---------RVLSVLIKELKKGTV--GDLIIEAAGEL 248 (280)
T ss_pred h---------hHHHHHHHHHcCCch--HHHHHHHHHhc
Confidence 2 467777777776653 34455555444
No 30
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2.3e-08 Score=104.00 Aligned_cols=279 Identities=19% Similarity=0.249 Sum_probs=198.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
.+..+..||..|.-.+.+.-.-....|..|+ --.+|+..+.+.|.|+.|++++...+++.+...+..|.|+|.+..++.
T Consensus 302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HHhHHHHHHHHHcccchHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 4577888999998888887778888888887 356899999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHH------------
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV------------ 507 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~------------ 507 (643)
.++..|.+|.++.+|.+.+ -...|..+|..+|.+++.|..+....+|+.+...+-++...-...++
T Consensus 381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR 458 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR 458 (791)
T ss_pred HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence 9999999999999997764 23557788888888888888877777887777665443211111111
Q ss_pred ---------------------------HHHHHhccCCc-----------------------------------------c
Q 040749 508 ---------------------------TALFNLSLNQA-----------------------------------------N 519 (643)
Q Consensus 508 ---------------------------~aL~nLs~~~~-----------------------------------------n 519 (643)
..+.|++.+.. .
T Consensus 459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld 538 (791)
T KOG1222|consen 459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD 538 (791)
T ss_pred cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence 12233333222 2
Q ss_pred hHHHHH-cCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 040749 520 KARAID-AGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLE 594 (643)
Q Consensus 520 ~~~lv~-~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~ 594 (643)
-.+++. ...||-+-..|.. ...+++-..+-.+..++........+..+|.|+.++++|+.. +.+..-.-..+...
T Consensus 539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q 618 (791)
T KOG1222|consen 539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ 618 (791)
T ss_pred HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 122121 3333444333332 123444555556666666777777788899999999999863 44555566666777
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
+..+.......+.+...--.|+.++.+.+..+|+-.--+|-.+..++
T Consensus 619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d 665 (791)
T KOG1222|consen 619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 77774433344445556668999999999999887777777665543
No 31
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.09 E-value=6.6e-11 Score=110.84 Aligned_cols=60 Identities=27% Similarity=0.591 Sum_probs=52.7
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhc---------------CCCCCCCcCcccccCCCCccH
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS---------------NHRTCPKTRQTLAHLSIAPNY 328 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~---------------~~~~cP~~~~~l~~~~l~pn~ 328 (643)
.+..++|.||||++.++|||+++|||.||+.||.+|+.. +...||.|+..++...++|.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 356678999999999999999999999999999999852 235799999999998888875
No 32
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=1.6e-08 Score=105.09 Aligned_cols=240 Identities=17% Similarity=0.172 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC
Q 040749 378 VQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG 457 (643)
Q Consensus 378 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~ 457 (643)
.-+-|+..|.+++ ++...-..+...+.+..||+.|...+.+.....+..|..||+.++||..+.+.|.+..|++++...
T Consensus 279 LLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~ 357 (791)
T KOG1222|consen 279 LLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ 357 (791)
T ss_pred HHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence 3456778888888 556666677888899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhc
Q 040749 458 STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE 537 (643)
Q Consensus 458 ~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~ 537 (643)
+++.+......|+|||.+..++..++..|.+|.|+.++.+.+. ..-|+..|+.++.++..+..+....+|+.+++.+.
T Consensus 358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~ 435 (791)
T KOG1222|consen 358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL 435 (791)
T ss_pred CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987553 44588899999999999999999999999999887
Q ss_pred cC-ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHH
Q 040749 538 ER-NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHL 615 (643)
Q Consensus 538 ~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 615 (643)
++ +..+-...++.-.|||.+..+.+.+.+..++..|++.-- ..+ ..-..++.+++.+.+.....++ ..+..|
T Consensus 436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D----~lLmK~vRniSqHeg~tqn~Fi--dyvgdL 509 (791)
T KOG1222|consen 436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRD----LLLMKVVRNISQHEGATQNMFI--DYVGDL 509 (791)
T ss_pred hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccc----hHHHHHHHHhhhccchHHHHHH--HHHHHH
Confidence 64 344444444555799999989898988778888876543 333 2345677888877765444443 346677
Q ss_pred HHHhhcCCHHH
Q 040749 616 IQLTEGGTSRA 626 (643)
Q Consensus 616 ~~ll~~g~~~~ 626 (643)
..++.+.+++.
T Consensus 510 a~i~~nd~~E~ 520 (791)
T KOG1222|consen 510 AGIAKNDNSES 520 (791)
T ss_pred HHHhhcCchHH
Confidence 77777665543
No 33
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.03 E-value=3.7e-08 Score=105.25 Aligned_cols=274 Identities=11% Similarity=0.072 Sum_probs=200.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIA 442 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~ 442 (643)
...++..|...+.-++..|+..|..+...++.+.......-....|...|++. +...+.-++.+|.+|...++.|..+.
T Consensus 103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 45566788888889999999999988865443221111111334566666654 46778888999999999999999999
Q ss_pred hcCChHHHHHHhcCC--CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccCC--
Q 040749 443 QQGAIPAIIEILQSG--STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLNQ-- 517 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-- 517 (643)
+.++++.|+.+|+.. +...+.+++-++|-||..++........+.|+.|+++++.. ...+.+-++.+|.||...+
T Consensus 183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~ 262 (429)
T cd00256 183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD 262 (429)
T ss_pred HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence 888999999999763 46889999999999999887666666689999999999864 5678889999999998743
Q ss_pred -----cchHHHHHcCChHHHHHHhcc--CChhhHHHHHHH-------HHHHhCChh------------------------
Q 040749 518 -----ANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSI-------LLLLATHPE------------------------ 559 (643)
Q Consensus 518 -----~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~-------L~~La~~~~------------------------ 559 (643)
.....|++.|+++.+-.+-.. .|+++.+..-.+ +..+++..+
T Consensus 263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E 342 (429)
T cd00256 263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE 342 (429)
T ss_pred cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence 123457777876655544433 566665443222 222332122
Q ss_pred hHHHhhcC--CcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749 560 GRHKIGQL--SFIETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636 (643)
Q Consensus 560 ~~~~i~~~--g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 636 (643)
+...+-+. ..+..|+++|. +.++.+..-|+.=+..++.+.|..+..+-+.|+=..+++++.+.++++|..|..+++.
T Consensus 343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk 422 (429)
T cd00256 343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK 422 (429)
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 22233333 34688899995 3456667677777888999888777777789999999999999999999999998886
Q ss_pred H
Q 040749 637 I 637 (643)
Q Consensus 637 L 637 (643)
|
T Consensus 423 l 423 (429)
T cd00256 423 L 423 (429)
T ss_pred H
Confidence 5
No 34
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.4e-08 Score=111.96 Aligned_cols=257 Identities=17% Similarity=0.173 Sum_probs=205.9
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHh-hccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcC-Ccc
Q 040749 361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLL-SKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSI-DES 436 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~-~~~ 436 (643)
...+..|++-|... ++..|.+|+.+|+.+ ...+++.-..+--.-++|.|+.+|+++ +.+++.+|+++|.+|+. .+.
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 34788999999865 888999999999854 445555444444456899999999987 78999999999999997 677
Q ss_pred hHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749 437 NKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL 515 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 515 (643)
....+++.++||.++.-|. -...++.+.++.+|-.+|.. .-..|.+.|++.+.+..|.--+..+++.|+.+..|.|.
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777889999999998664 45689999999999999853 34567789999999999987788899999999999986
Q ss_pred C--CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcC----ChHHH
Q 040749 516 N--QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREG----TPKNK 585 (643)
Q Consensus 516 ~--~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~----s~~~~ 585 (643)
. ++.-..+++ ++|.|..+|...+...++.++-++..++. .++--+.+...|.|..+..++.-. +..+.
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 3 344444444 68999999999888999999988888865 455567788899999999999743 22345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhc
Q 040749 586 ECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG 621 (643)
Q Consensus 586 e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 621 (643)
...+..|..+|++++-.....+..++...|..++..
T Consensus 402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 556667788888888888888889999999988864
No 35
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=3.8e-10 Score=118.58 Aligned_cols=70 Identities=14% Similarity=0.360 Sum_probs=63.8
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHH
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE 339 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 339 (643)
..+...|.||||++++.+||+++|||+||..||..|+... ..||.|+..+....+.+|..+.++|+.|..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~ 90 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN 90 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence 3577889999999999999999999999999999999864 479999999998889999999999998864
No 36
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.91 E-value=1.7e-08 Score=105.73 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=165.7
Q ss_pred cHHHHHhCC--CCChHHHHHHHHHHHHhcCCcchHH-HHHh------cCChHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 040749 406 IPPLVQLLP--YPDSKILEHAVTAVLNLSIDESNKR-LIAQ------QGAIPAIIEILQSGSTEARENSAAALFSLSMLD 476 (643)
Q Consensus 406 i~~Lv~lL~--~~d~~~~~~a~~~L~nLs~~~~~k~-~i~~------~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~ 476 (643)
...++.+|+ +++.++....+..+..+..+++.+. .+.. ...+.++++++.+++..+...|+.+|..|....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 445555554 3588899999999999887665543 3332 236889999999999999999999999998765
Q ss_pred cchhhhhccCChHHHHHHhcc----CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh-----cc--CChhhHH
Q 040749 477 ENKITIGLSDGIPPLVDLLQN----GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL-----EE--RNLGMVD 545 (643)
Q Consensus 477 ~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL-----~~--~~~~~~~ 545 (643)
..+......+.++.+++.+++ .+......|+.+|.+|...++.|..+.+.|+++.|..++ .. ....++-
T Consensus 137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y 216 (312)
T PF03224_consen 137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY 216 (312)
T ss_dssp TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence 554444335677888888775 334566889999999999999999999999999999999 22 3456678
Q ss_pred HHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhcC-
Q 040749 546 EALSILLLLATHPEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEGG- 622 (643)
Q Consensus 546 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g- 622 (643)
+++-++|.|+-+++....+...+.|+.|+++++.. ...+..-++++|.|++...+. ....++..|+++.+-.+....
T Consensus 217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~ 296 (312)
T PF03224_consen 217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW 296 (312)
T ss_dssp HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999864 477888999999999987765 667777888888777777654
Q ss_pred -CHHHHHHHHHH
Q 040749 623 -TSRAQRKANAL 633 (643)
Q Consensus 623 -~~~~k~~A~~l 633 (643)
+++..+--..+
T Consensus 297 ~Dedl~edl~~L 308 (312)
T PF03224_consen 297 SDEDLTEDLEFL 308 (312)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 77776554443
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.89 E-value=1.3e-07 Score=97.38 Aligned_cols=260 Identities=15% Similarity=0.093 Sum_probs=187.9
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--------------------------------------------
Q 040749 381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-------------------------------------------- 416 (643)
Q Consensus 381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-------------------------------------------- 416 (643)
-+...|.+...++.+.|...++.|+++.|...+.-+
T Consensus 155 v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~ 234 (604)
T KOG4500|consen 155 VAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPS 234 (604)
T ss_pred HHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHH
Confidence 344566666667777777777777777665544321
Q ss_pred --ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC-CC----HH---HHHHHHHHHHhccccccchhhhhcc-
Q 040749 417 --DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS-GS----TE---ARENSAAALFSLSMLDENKITIGLS- 485 (643)
Q Consensus 417 --d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~----~e---~~~~Aa~~L~~Ls~~~~~k~~i~~~- 485 (643)
++++.+-....|...+.++.-+-.+++.|.+..++++++. .+ .+ .-..++....-|...|+.-..+...
T Consensus 235 ~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p 314 (604)
T KOG4500|consen 235 MVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADP 314 (604)
T ss_pred hhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCc
Confidence 2334445556666667677777778889999999998875 21 11 1122333333344445554445444
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCChhh
Q 040749 486 DGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATHPEG 560 (643)
Q Consensus 486 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~~~~ 560 (643)
..+..+++.+.+.+......+.-+|.|++..+.++..+++.|.+..|++.|.. ++-..+.+++.+|.||.-...+
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 48999999999999999999999999999999999999999999999999965 4556788999999999999999
Q ss_pred HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHH-HHHHHHHHHHHHH
Q 040749 561 RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSR-AQRKANALLQLIS 638 (643)
Q Consensus 561 ~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~-~k~~A~~lL~~L~ 638 (643)
+..+..+|++..++..+...+|.+...-...|..+-..-+ -.+....+...+..|+.+.++.+-. +--...++|..|-
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI 474 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI 474 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence 9999999999999999999999999998888887765443 2334444566788888888877543 3444444444444
Q ss_pred hh
Q 040749 639 KS 640 (643)
Q Consensus 639 ~~ 640 (643)
+|
T Consensus 475 kH 476 (604)
T KOG4500|consen 475 KH 476 (604)
T ss_pred Hh
Confidence 33
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.88 E-value=4.2e-08 Score=102.77 Aligned_cols=213 Identities=21% Similarity=0.240 Sum_probs=160.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhc------CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC------GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~------g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
.+++.+ +.+.+.....+..+..+..+++.....+... ....++++++.++|..++..|+..|..+......+.
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~ 140 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS 140 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence 444444 4678888899999999998888776666652 257788899999999999999999999987655443
Q ss_pred HHHhcCChHHHHHHhcC----CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh-----cc--CChhhHHHHHH
Q 040749 440 LIAQQGAIPAIIEILQS----GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL-----QN--GTIRGKKDAVT 508 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-----~~--~~~~~~~~A~~ 508 (643)
.-...+.++.++..|.+ ++.+.+..|+.+|.+|...+.+|..+.+.++++.+++++ .+ .....++.++.
T Consensus 141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll 220 (312)
T PF03224_consen 141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL 220 (312)
T ss_dssp HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence 33235667888887765 345667899999999999999999999999999999999 22 24678899999
Q ss_pred HHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChh--hHHHhhcCCcHHHHHHHHhc
Q 040749 509 ALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPE--GRHKIGQLSFIETLVEYIRE 579 (643)
Q Consensus 509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~--~~~~i~~~g~i~~Lv~lL~~ 579 (643)
+++.|+.+++....+...+.|+.|++++.. ..+.++.-++++|.||..... ....++..|+++.+-.+...
T Consensus 221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r 294 (312)
T PF03224_consen 221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER 294 (312)
T ss_dssp HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence 999999999999999999999999999976 778999999999999998655 77777776666665555543
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.84 E-value=6.7e-07 Score=106.54 Aligned_cols=120 Identities=15% Similarity=0.060 Sum_probs=69.0
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcC
Q 040749 488 IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQL 567 (643)
Q Consensus 488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~ 567 (643)
++.|..++++.++.++..|+.+|.++... ..+++.++..|.++++.++..|+.+|..+.. .
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~ 837 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------D 837 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------c
Confidence 44555555555555555555555444211 0112334555555555555555555554321 2
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 636 (643)
..++.|+.+|.+.++.+|..|+.+|..+ ..++ ...+.|...+.+.++.+|+.|...|..
T Consensus 838 ~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 838 VAVPALVEALTDPHLDVRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 3457777777777777777777777665 1122 246677777788888888888877753
No 40
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.5e-09 Score=103.39 Aligned_cols=58 Identities=26% Similarity=0.617 Sum_probs=51.9
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCcCcccccCCCCccHH
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKTRQTLAHLSIAPNYA 329 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l~pn~~ 329 (643)
-..|.|-||++.-+|||++.|||-||+.||.+|++. +...||+|+..++.+.++|-|.
T Consensus 45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 356999999999999999999999999999999993 4456899999999999999764
No 41
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.82 E-value=2.4e-09 Score=75.06 Aligned_cols=38 Identities=37% Similarity=0.934 Sum_probs=33.1
Q ss_pred cccCcccccCc-eecCCCCccchHHHHHHHhcCCCCCCCc
Q 040749 277 CPITLEIMRDP-VIIASGQTFERESVQKWFDSNHRTCPKT 315 (643)
Q Consensus 277 CpIc~~~m~dP-v~~~cg~ty~r~~I~~~~~~~~~~cP~~ 315 (643)
||||.+.+.+| ++++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 57899999999999999998 5789986
No 42
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.79 E-value=5.7e-07 Score=107.17 Aligned_cols=230 Identities=17% Similarity=0.114 Sum_probs=144.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
+...++.|++.|.+.++.+|+.|+..|..+.. .++++.|+..|+.+++.++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence 34567889999999999999999999887652 336788889998889999998888887763211
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-----------cc--hh----hhhccCChHHHHHHhccCChhh
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-----------EN--KI----TIGLSDGIPPLVDLLQNGTIRG 502 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-----------~~--k~----~i~~~g~i~~Lv~lL~~~~~~~ 502 (643)
...+.+...|.+.++.+|..|+.+|..+...+ +. +. .++..+..+.|..++.+.++.+
T Consensus 684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V 758 (897)
T PRK13800 684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV 758 (897)
T ss_pred -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence 11234455555555566665555555442100 00 00 0000112233444455555555
Q ss_pred HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCCh
Q 040749 503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTP 582 (643)
Q Consensus 503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~ 582 (643)
+..++.+|..+... +...++.|..++.++++.++..|+..|..+...+ ..+..+...|.+.++
T Consensus 759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~ 821 (897)
T PRK13800 759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAW 821 (897)
T ss_pred HHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCCh
Confidence 55555555544321 1123566777777777777777777776653321 223456677777777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 583 KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 583 ~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
.+|..|+.+|..+.. ...++.|..++.+.+..+|..|...|..+
T Consensus 822 ~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 822 QVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 777777777766532 23579999999999999999999999775
No 43
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.73 E-value=3.8e-09 Score=104.67 Aligned_cols=67 Identities=19% Similarity=0.378 Sum_probs=60.5
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW 337 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 337 (643)
.+.+-++|-||.++|+-|+++|||||||.-||..++.. ++.||.|..+.+...+..|..+..+|+.+
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~ 85 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSL 85 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHH
Confidence 35567899999999999999999999999999999985 56899999999999999999988888765
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=4.2e-06 Score=92.29 Aligned_cols=272 Identities=20% Similarity=0.245 Sum_probs=205.3
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc
Q 040749 360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~ 436 (643)
..++|+.|+..+.+ .-.+.|+.|+..|..+++ ..|..++ +.|+++|+..|..+ |+++...++.+++++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 45789999998875 457889999999999984 4555555 45789999999876 89999999999999987553
Q ss_pred ------h-H------HH----HH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc--cchhhhhc-cCChHHHHHHh
Q 040749 437 ------N-K------RL----IA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLD--ENKITIGL-SDGIPPLVDLL 495 (643)
Q Consensus 437 ------~-k------~~----i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~-~g~i~~Lv~lL 495 (643)
+ + .+ ++ ..+.|..++..+...+-.+|..+...|.+|-... +.+..+.. +-+|..|+.+|
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 1 2 12 22 5788999999999989999999999999986543 45555554 88999999999
Q ss_pred ccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccC---C-hhhHHHHHHHHHHHhC-ChhhHHHhhcCCc
Q 040749 496 QNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEER---N-LGMVDEALSILLLLAT-HPEGRHKIGQLSF 569 (643)
Q Consensus 496 ~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~---~-~~~~~~Al~~L~~La~-~~~~~~~i~~~g~ 569 (643)
.+....++-.|+..|..|+....+..++|. .+++..|..++... + .-+++.|+.+|.||-. +..++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 998888999999999999998888888887 89999999999761 2 3568999999999987 5677888888899
Q ss_pred HHHHHHHHhc---CCh--------H--HHHHHHHHHHHHhcC-C-H---HHH-HHHHHCCcHHHHHHHhhcC--CHHHHH
Q 040749 570 IETLVEYIRE---GTP--------K--NKECATAVLLELGAN-N-S---SFI-LAALQYGVYEHLIQLTEGG--TSRAQR 628 (643)
Q Consensus 570 i~~Lv~lL~~---~s~--------~--~~e~A~~~L~~L~~~-~-~---~~~-~~~~~~g~i~~L~~ll~~g--~~~~k~ 628 (643)
|+.|.++|.. ++. + .-..|+.++..+..- + + ..+ ..+...+++..|+.++.+. ...++.
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt 335 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT 335 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence 9999988863 221 1 123456666666532 1 1 122 3455788999999888765 334444
Q ss_pred HHHHHHH
Q 040749 629 KANALLQ 635 (643)
Q Consensus 629 ~A~~lL~ 635 (643)
.+.-.+.
T Consensus 336 esiitvA 342 (970)
T KOG0946|consen 336 ESIITVA 342 (970)
T ss_pred HHHHHHH
Confidence 4433333
No 45
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.68 E-value=1e-08 Score=72.65 Aligned_cols=36 Identities=31% Similarity=0.746 Sum_probs=23.3
Q ss_pred cccCcccccC----ceecCCCCccchHHHHHHHhcC---CCCCC
Q 040749 277 CPITLEIMRD----PVIIASGQTFERESVQKWFDSN---HRTCP 313 (643)
Q Consensus 277 CpIc~~~m~d----Pv~~~cg~ty~r~~I~~~~~~~---~~~cP 313 (643)
||||.+ |.+ |++++|||+||+.||++|+..+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 9999999999999999999954 44576
No 46
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.62 E-value=2.7e-08 Score=70.59 Aligned_cols=39 Identities=41% Similarity=0.978 Sum_probs=36.2
Q ss_pred cccCcccccCce-ecCCCCccchHHHHHHHh-cCCCCCCCc
Q 040749 277 CPITLEIMRDPV-IIASGQTFERESVQKWFD-SNHRTCPKT 315 (643)
Q Consensus 277 CpIc~~~m~dPv-~~~cg~ty~r~~I~~~~~-~~~~~cP~~ 315 (643)
||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999999 666789986
No 47
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.7e-08 Score=97.73 Aligned_cols=54 Identities=19% Similarity=0.410 Sum_probs=47.6
Q ss_pred CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA 325 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 325 (643)
.+..+.|.+|++-+.||-.+||||.||++||..|..+.. .||.||...++..++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCccee
Confidence 345699999999999999999999999999999999754 599999998877653
No 48
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.59 E-value=1.8e-08 Score=76.18 Aligned_cols=58 Identities=22% Similarity=0.452 Sum_probs=33.4
Q ss_pred ccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHH
Q 040749 274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLI 334 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i 334 (643)
-++|++|.++|+.||.+ .|.|.||+.||.+.+.. .||.|+.|....++.-|..|.++|
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 47899999999999975 79999999999886643 499999999999999999998876
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=5.8e-06 Score=84.69 Aligned_cols=183 Identities=23% Similarity=0.283 Sum_probs=148.8
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHH
Q 040749 373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAII 451 (643)
Q Consensus 373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv 451 (643)
+.+.+.+..|+..|..++ ++-+|-..+...|+.+.++.++.+.+..+|+.|+++|+..+.+ +..+..+++.|+++.|+
T Consensus 94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 457888999999999999 7889999999999999999999999999999999999999885 56688899999999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhcc--CChhhHHHHHHHHHHhccCC-cchHHHHHc
Q 040749 452 EILQSG-STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQN--GTIRGKKDAVTALFNLSLNQ-ANKARAIDA 526 (643)
Q Consensus 452 ~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~-~n~~~lv~~ 526 (643)
..|.+. +..++..|..++++|-.+. .....+...++...|.+.+.+ .+...+..|+..+..|.... .....+-..
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~ 252 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL 252 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence 999865 4677889999999887554 345556666779999999988 46778888998898887543 334444456
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 527 GIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 527 G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
|....+..+....+..+.+.++..+..+..
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 666777777777777888888877766655
No 50
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.56 E-value=8.7e-08 Score=94.14 Aligned_cols=49 Identities=22% Similarity=0.487 Sum_probs=41.0
Q ss_pred CCccccccCcccccCc--------eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDP--------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dP--------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.++..||||++.+.+| ++.+|||+||+.||.+|+.. ..+||.||.++..
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~ 228 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS 228 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence 4567899999987764 55689999999999999986 4689999998763
No 51
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.54 E-value=5.2e-08 Score=72.37 Aligned_cols=47 Identities=30% Similarity=0.620 Sum_probs=40.5
Q ss_pred CccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccc
Q 040749 273 HEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+++.|+||++...++++.||||. ||..|+.+|+.. ...||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence 35789999999999999999999 999999999984 568999999875
No 52
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.52 E-value=2.8e-06 Score=95.73 Aligned_cols=254 Identities=17% Similarity=0.223 Sum_probs=183.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
..++.+.+.|.++++.+|++|+.++..+.+.+|+. +... .++.+.++|...|+.++..|+.++..+...++....+
T Consensus 114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~ 189 (526)
T PF01602_consen 114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhh
Confidence 45777888899999999999999999999776653 2222 5899999999999999999999999991111111111
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
-...+..|.+++...++..+..++.+|..++........- ...++.+..++++.++.+...++.++..+...+.
T Consensus 190 -~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--- 263 (526)
T PF01602_consen 190 -IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--- 263 (526)
T ss_dssp -HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH---
T ss_pred -HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH---
Confidence 2334566666667888999999999999887543322200 4578889999998889999999999998876554
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCH
Q 040749 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.-..+++.|+.++.++++.++-.++..|..++... ...+ . .....+..+. +.++.+|..++.+|..++..
T Consensus 264 --~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~-- 334 (526)
T PF01602_consen 264 --LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANE-- 334 (526)
T ss_dssp --HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--
T ss_pred --HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccc--
Confidence 44457889999999888889999999999998754 2222 2 2333344555 67888999999999999853
Q ss_pred HHHHHHHHCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHh
Q 040749 601 SFILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQLISK 639 (643)
Q Consensus 601 ~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~L~~ 639 (643)
.+... +++.|...+. ..++..++.+...+..+..
T Consensus 335 ~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 335 SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 33333 5777777774 4477788888877776654
No 53
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.2e-08 Score=89.41 Aligned_cols=53 Identities=23% Similarity=0.587 Sum_probs=45.4
Q ss_pred CccccccCcccccC--ceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749 273 HEFLCPITLEIMRD--PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326 (643)
Q Consensus 273 ~~f~CpIc~~~m~d--Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 326 (643)
.-|.||||++-+.. ||.+.|||.||+.||...++.++ .||.|++.+++..+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence 34999999999974 66678999999999999998765 7999999998877654
No 54
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.48 E-value=1e-05 Score=83.95 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=199.3
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhH---HHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHH
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENR---ILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r---~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
-...+.+|...++-....+.+.+..++.-....- ..-.. ...|-..+.+ .+.+....++.+|-.+...++.|.
T Consensus 116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~ 192 (442)
T KOG2759|consen 116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY 192 (442)
T ss_pred hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence 5677888888888888888888888875443221 11111 2233344444 567777888999999999999999
Q ss_pred HHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 040749 440 LIAQQGAIPAIIEILQS--GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 516 (643)
.++.+.++..++..+.+ .+..++....-++|-|+.++.....+...+.|+.|+.++++. ...+.+-.+.++.|+...
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k 272 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK 272 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999998843 357899999999999999988887786689999999999875 467788889999999876
Q ss_pred Cc-------chHHHHHcCChHHHHHHhcc--CChhhHHHHHH-------HHHHHhCChhhH-------------------
Q 040749 517 QA-------NKARAIDAGIVLPLMNLLEE--RNLGMVDEALS-------ILLLLATHPEGR------------------- 561 (643)
Q Consensus 517 ~~-------n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~-------~L~~La~~~~~~------------------- 561 (643)
.+ ....|+..++.+.+-.+... .|+++.+..-. ....|++..+..
T Consensus 273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F 352 (442)
T KOG2759|consen 273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF 352 (442)
T ss_pred CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence 63 23556666666655554443 56666544322 222333322222
Q ss_pred -----HHhhcC--CcHHHHHHHHhcCC-hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHH
Q 040749 562 -----HKIGQL--SFIETLVEYIREGT-PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANAL 633 (643)
Q Consensus 562 -----~~i~~~--g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~l 633 (643)
..+-+. ..+..|+++|...+ |..-.-|+.=+....++.|+....+.+.|+=..++.++.+.+|++|-.|..+
T Consensus 353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla 432 (442)
T KOG2759|consen 353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA 432 (442)
T ss_pred HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence 222222 35788899998654 7777777777888889999888888899999999999999999999999988
Q ss_pred HHHH
Q 040749 634 LQLI 637 (643)
Q Consensus 634 L~~L 637 (643)
++.|
T Consensus 433 vQ~l 436 (442)
T KOG2759|consen 433 VQKL 436 (442)
T ss_pred HHHH
Confidence 8765
No 55
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.46 E-value=6.8e-06 Score=85.64 Aligned_cols=263 Identities=14% Similarity=0.116 Sum_probs=186.0
Q ss_pred HHHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcc-
Q 040749 361 KEEIVSLVEQLSSSKLEV--QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDES- 436 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~--~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~- 436 (643)
.+.+..|++++.+++.+. +.+|.+.|..+. ..+||+.++..| +..++.+-+ .+.++.+...+..|.++.++.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 467889999999987765 778888888776 468999999877 444444333 3456778888999999999754
Q ss_pred hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749 437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 514 (643)
....++++|+++.++...+..++.+..+++-+|.|++.. ...+..+++..+-..|..+-.+.+.-.+.+|+.|+.-|+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA 335 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence 467788999999999999988999999999999998865 457788888888889998887778888999999999999
Q ss_pred cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 515 ~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
.+.+.-..+-+.|.+..+-.++.+.++.-... .-..+..|+ ...-+..|+.+|++..-+.+ ++.+. .
T Consensus 336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq--~i~AF-~ 402 (832)
T KOG3678|consen 336 TNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQ--CIGAF-Y 402 (832)
T ss_pred hhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhh--hhHHH-H
Confidence 88887776777776554444444434321110 000111111 12347788888874333333 33332 2
Q ss_pred Hhc----CCHHH-HHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 595 LGA----NNSSF-ILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 595 L~~----~~~~~-~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+|. .+.+. ...+-+-|+|+.|-++..+.+.-...-|...|+.+.+
T Consensus 403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 222 11122 2233467999999999997777777888889988754
No 56
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.44 E-value=1.1e-07 Score=92.52 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=57.5
Q ss_pred CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHH
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWC 338 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 338 (643)
+..-++|-||.+.++-|++++||||||.-||.+++.. ++.||.|+.+....-+..+..++..++.+.
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 3445899999999999999999999999999999986 468999999888777777777777776654
No 57
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.43 E-value=5.2e-06 Score=93.56 Aligned_cols=255 Identities=22% Similarity=0.258 Sum_probs=185.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
-.+..+.+.|.++++..+.-|++.|.++. +++.... .++.+.+++.++++.+|..|+.++..+....+. .+
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~ 149 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LV 149 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HH
Confidence 46777888899999999999999999987 4443332 467889999999999999999999998763222 11
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhc-cccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSL-SMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
... .++.+..+|.+.++.++..|+.++..+ ...+... -.-...++.|.+++...++-.+...+..|..++......
T Consensus 150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 122 588999999988999999999999999 2211111 011334555555556778888888888888776543332
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.. ....++.+..++.+.++.+.-.|+.++..+...+. .-..+++.|..++.+.++..+..++..|..++...+
T Consensus 227 ~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~ 299 (526)
T PF01602_consen 227 AD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP 299 (526)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred hh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence 21 14567888888888888999999999999888765 223678899999998889999999999999998763
Q ss_pred HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.. +. .....+..+..+.+..+|.+|..+|..+.+.
T Consensus 300 ~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~ 334 (526)
T PF01602_consen 300 PA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE 334 (526)
T ss_dssp HH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred hh----hh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence 22 22 2233344444478899999999999888753
No 58
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.43 E-value=8.8e-08 Score=72.55 Aligned_cols=44 Identities=34% Similarity=0.742 Sum_probs=31.4
Q ss_pred CccccccCcccccCceec-CCCCccchHHHHHHHh-cCCCCCCCcC
Q 040749 273 HEFLCPITLEIMRDPVII-ASGQTFERESVQKWFD-SNHRTCPKTR 316 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~-~~~~~cP~~~ 316 (643)
-.+.|||++..|.|||.- .|||+|++.+|.+|+. .+...||..+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 358999999999999985 8999999999999994 3455799854
No 59
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.5e-05 Score=81.65 Aligned_cols=178 Identities=19% Similarity=0.131 Sum_probs=149.4
Q ss_pred CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHH
Q 040749 457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNL 535 (643)
Q Consensus 457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~l 535 (643)
.+.+-++.|..-|..+..+-+|...+...|+..+++..+.+++..++..|++.|...+.+ +..+..+++.|+.+.|+.+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 367888888888999988888888999999999999999999999999999999998875 4456668899999999999
Q ss_pred hcc-CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Q 040749 536 LEE-RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE--GTPKNKECATAVLLELGANNSSFILAALQYGV 611 (643)
Q Consensus 536 L~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~ 611 (643)
|.. .+..++..|+.++..|-. ++.+...+...++...|...+.+ .+...+..|+..+..|..........+...+.
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 986 444566899999999988 57889999999999999999998 56788999999999998877766666666777
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHH
Q 040749 612 YEHLIQLTEGGTSRAQRKANALL 634 (643)
Q Consensus 612 i~~L~~ll~~g~~~~k~~A~~lL 634 (643)
...+..+..+....+++.|...+
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~ 277 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTAL 277 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHH
Confidence 77777888888777777776543
No 60
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.39 E-value=1.6e-07 Score=67.67 Aligned_cols=40 Identities=35% Similarity=0.830 Sum_probs=33.8
Q ss_pred ccccCccccc---CceecCCCCccchHHHHHHHhcCCCCCCCcC
Q 040749 276 LCPITLEIMR---DPVIIASGQTFERESVQKWFDSNHRTCPKTR 316 (643)
Q Consensus 276 ~CpIc~~~m~---dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~ 316 (643)
.||||++.+. .++.++|||.|+..||.+|++.. .+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence 4999999995 45667999999999999999985 5899985
No 61
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.7e-06 Score=92.70 Aligned_cols=102 Identities=26% Similarity=0.427 Sum_probs=82.7
Q ss_pred ChhhHHHHHHHHHHHHHhhhhhcccCCCCCCchhhcccCCCCCCCCccccccCcccccCceecC-CCCccchHHHHHHHh
Q 040749 228 SSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFD 306 (643)
Q Consensus 228 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~ 306 (643)
.+..++++..+..++++.-..+..+ +.+.+++||+|..|+...+|+|||++| +|-+.+|+-|..++-
T Consensus 820 s~~~IE~l~~f~nr~E~~r~~ea~E------------eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahll 887 (929)
T COG5113 820 SESQIEELRSFINRLEKVRVIEAVE------------EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLL 887 (929)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhh------------hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHh
Confidence 3556777777777776644222211 234678999999999999999999997 789999999999998
Q ss_pred cCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749 307 SNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN 342 (643)
Q Consensus 307 ~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 342 (643)
++. +.|..|.|++-.+++||..||.-|..|....+
T Consensus 888 sd~-tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 888 SDG-TDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred cCC-CCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 764 89999999999999999999999998865443
No 62
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.38 E-value=2.4e-05 Score=83.95 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=161.4
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhc-----CCcHHHHHhCCCCChHHHHHHHHHHHHhcCC
Q 040749 361 KEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADC-----GAIPPLVQLLPYPDSKILEHAVTAVLNLSID 434 (643)
Q Consensus 361 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~ 434 (643)
...+..++..|+. ...+.....+.-+..+...++..-..+.+. ....+++.+|.++|.-++..|...|..+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 3567788888874 566777777778888887766655556554 3566777899989999999999999888653
Q ss_pred cc-hHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhHHHHHHHH
Q 040749 435 ES-NKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGKKDAVTAL 510 (643)
Q Consensus 435 ~~-~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL 510 (643)
.. +.......-.+..+...|+++ +...+..++.+|..|...+.+|..+.+.++++.|+++|+.. ....++.++-++
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l 211 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI 211 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence 22 111111111334556666654 47788889999999999999999998888999999999763 457889999999
Q ss_pred HHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCCh-------hhHHHhhcCCcHHHHHHHHh
Q 040749 511 FNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHP-------EGRHKIGQLSFIETLVEYIR 578 (643)
Q Consensus 511 ~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~-------~~~~~i~~~g~i~~Lv~lL~ 578 (643)
+-|+.+++....+...+.|+.|++++.. ..+.++.-++.+|.||...+ .....+++.|+.+ ++..|.
T Consensus 212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~ 286 (429)
T cd00256 212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE 286 (429)
T ss_pred HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence 9999998877777789999999999976 67889999999999998743 1233455555544 445554
No 63
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.35 E-value=2.5e-06 Score=74.95 Aligned_cols=153 Identities=18% Similarity=0.129 Sum_probs=126.8
Q ss_pred cCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH
Q 040749 444 QGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR 522 (643)
Q Consensus 444 ~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 522 (643)
.+.+..|+.-... .+.++++...+-|.|.+.++.|-..+.+..++..+++-|...+...+..+...|+|+|..+.|...
T Consensus 15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~ 94 (173)
T KOG4646|consen 15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF 94 (173)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence 3566777776654 578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 523 AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 523 lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
+++++++|..+..++++....+..|+..+..|+-. ..-+..+....++..+.+.-.+.+.+.+..|-..|-..|
T Consensus 95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~ 169 (173)
T KOG4646|consen 95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV 169 (173)
T ss_pred HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 99999999999999999888999999999999874 445777777666666665554555555555655555444
No 64
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.35 E-value=4.1e-07 Score=65.47 Aligned_cols=43 Identities=42% Similarity=0.910 Sum_probs=38.4
Q ss_pred ccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCcc
Q 040749 276 LCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQT 318 (643)
Q Consensus 276 ~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~ 318 (643)
.|+||++.+.+|+.++ |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999998888775 999999999999999867789999865
No 65
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.4e-05 Score=87.21 Aligned_cols=56 Identities=23% Similarity=0.450 Sum_probs=50.6
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
..-++||.|..-++|-||+.|||.||..||+..+....+.||.|+..+...++.|-
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 34589999999999999999999999999999999888999999999988877653
No 66
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.32 E-value=2.9e-06 Score=74.56 Aligned_cols=155 Identities=17% Similarity=0.112 Sum_probs=133.2
Q ss_pred hccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749 483 GLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR 561 (643)
Q Consensus 483 ~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 561 (643)
...+.+..||.-... .+.+.++....-|.|.+.++-|-..+.+..++...+.-|...+..+++.+.+.|+|+|-.+.+.
T Consensus 13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence 345667778877765 4778899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
+.|.++++++.++..+.+....+...|+..|..||-.+...+..+....++..+.++..+.+.+-+--|...|...
T Consensus 93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~ 168 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH 168 (173)
T ss_pred HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999999888778888899999999998888888888888888888887666666666666666543
No 67
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=2.5e-06 Score=97.38 Aligned_cols=74 Identities=31% Similarity=0.508 Sum_probs=68.2
Q ss_pred CCCCCCccccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749 268 SLVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN 342 (643)
Q Consensus 268 ~~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 342 (643)
..++|++|..|+...+|+|||++| +|++.||.-|++++..+. +.|+||.+|+...+.||..+|.-|..|..+..
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~-tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDC-TDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCC-CCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 457999999999999999999998 999999999999999754 79999999999999999999999999976543
No 68
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.26 E-value=8.6e-07 Score=61.47 Aligned_cols=39 Identities=46% Similarity=1.041 Sum_probs=35.8
Q ss_pred cccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCc
Q 040749 277 CPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKT 315 (643)
Q Consensus 277 CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~ 315 (643)
||||++...+|++++|||.||..|+..|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998666679986
No 69
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.7e-07 Score=93.27 Aligned_cols=69 Identities=30% Similarity=0.627 Sum_probs=58.4
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhc
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKN 341 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 341 (643)
...+++.||||++.+.+|++++|||+||+.||..++. ....||.|+. .. ..+.+|..+..++..+...+
T Consensus 9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~ 77 (386)
T KOG2177|consen 9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLR 77 (386)
T ss_pred hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999998 6678999996 22 27779999998888776543
No 70
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.00032 Score=70.31 Aligned_cols=270 Identities=20% Similarity=0.198 Sum_probs=177.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
....++.+|.+.++.++..|+..+..++.. ..+..... .-.++.+.+++...++ -+.|+++|.|++.+..-+..+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 355788999999999999999998888854 33333322 3367888898887666 578899999999998888877
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--c----CChHHHHHHh-ccC-Ch-hhHHHHHHHHHH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--S----DGIPPLVDLL-QNG-TI-RGKKDAVTALFN 512 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~----g~i~~Lv~lL-~~~-~~-~~~~~A~~aL~n 512 (643)
... .+..+++.+.+.........+.+|.||+..++....+.. . .++..++..+ ..+ +. .-...-+..+.|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 766 888888888887666677788999999988765443321 1 3344444443 322 21 222345667778
Q ss_pred hccCCcchHHHHHcCChHH--HHHHhccCChhhHH-HHHHHHHHHhCChhhHHHhhcCC--cHHHHH-------------
Q 040749 513 LSLNQANKARAIDAGIVLP--LMNLLEERNLGMVD-EALSILLLLATHPEGRHKIGQLS--FIETLV------------- 574 (643)
Q Consensus 513 Ls~~~~n~~~lv~~G~v~~--Lv~lL~~~~~~~~~-~Al~~L~~La~~~~~~~~i~~~g--~i~~Lv------------- 574 (643)
|+.....|..+.+...++. |+.+ .+.+..++. -.+++|.|.|-.......+...+ .++.|+
T Consensus 159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred HhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 9988888877766553332 2222 223333333 34677777776555555544421 122222
Q ss_pred --------HHHh-----cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 040749 575 --------EYIR-----EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLISK 639 (643)
Q Consensus 575 --------~lL~-----~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~~ 639 (643)
+++- ..+|.++..-+.+|..||... ..+..+...|+.+.|-++=... ++.+++....+..++.+
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 2332 246788999999999999754 3456666778777777766544 67788877777777765
No 71
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=4.9e-05 Score=84.73 Aligned_cols=215 Identities=19% Similarity=0.239 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchH
Q 040749 361 KEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k 438 (643)
...++.|+.+|+. .+.+++..|+++|.+++.--|..-..+++.++||.|+.-| .-..-++-+.++.+|..++.. .-
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~ 287 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HP 287 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--cc
Confidence 5689999999994 6899999999999999988888888999999999998844 445778889999999999852 23
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL- 515 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~- 515 (643)
..|..+|++-..+..|.--+.-++..|.++..|++.. .+.-..+ ..++|.|..+|...+....+.++.++..++.
T Consensus 288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~ 365 (1051)
T KOG0168|consen 288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADG 365 (1051)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 4567899999999999877788999999999998743 2222222 3589999999999988888989888888763
Q ss_pred --CCcc-hHHHHHcCChHHHHHHhccC----ChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhc
Q 040749 516 --NQAN-KARAIDAGIVLPLMNLLEER----NLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIRE 579 (643)
Q Consensus 516 --~~~n-~~~lv~~G~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~ 579 (643)
+.++ -.++...|.|....++|.-. +..+..-.+..|..+|+. +.........++...|..+|..
T Consensus 366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g 437 (1051)
T KOG0168|consen 366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG 437 (1051)
T ss_pred cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence 3333 34577899999999998653 234445556777777764 8888888888888888888853
No 72
>PTZ00429 beta-adaptin; Provisional
Probab=98.19 E-value=0.00057 Score=78.87 Aligned_cols=256 Identities=16% Similarity=0.130 Sum_probs=173.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
...+..++.+.+.+.+.++-.---+.+.++.+++.-.. ++..|.+=+.++++.+|..|+++|.++-.. .+
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i 137 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV 137 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH
Confidence 45777888888999888887777788888666653211 467788888899999999999999887631 12
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
+ .-.++.+.+.|.+.++.+|..|+-++.++-..+. ..+...|.++.|..+|.+.++.+..+|+.+|..+....+...
T Consensus 138 ~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l 214 (746)
T PTZ00429 138 L-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI 214 (746)
T ss_pred H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence 1 2246677788888999999999999999854322 334456889999999999999999999999999986554432
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC-H
Q 040749 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN-S 600 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~ 600 (643)
. ...+.+..|+..|.+.++-.+-..+.+|... .+...... ...+..+...|++.++.+.-.|+.++.++.... +
T Consensus 215 ~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~ 289 (746)
T PTZ00429 215 E-SSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ 289 (746)
T ss_pred H-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence 2 2344566677777654544455555555432 22221111 246777778888888999999999998887542 2
Q ss_pred HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
.....+. ..+.++|+.+ .++++.+|--+..-|..+
T Consensus 290 ~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i 324 (746)
T PTZ00429 290 ELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHAL 324 (746)
T ss_pred HHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHH
Confidence 2222211 1123455555 355667776666555544
No 73
>PHA02926 zinc finger-like protein; Provisional
Probab=98.14 E-value=1.5e-06 Score=82.45 Aligned_cols=51 Identities=18% Similarity=0.432 Sum_probs=40.9
Q ss_pred CCCccccccCcccccC---------ceecCCCCccchHHHHHHHhcC-----CCCCCCcCccccc
Q 040749 271 IPHEFLCPITLEIMRD---------PVIIASGQTFERESVQKWFDSN-----HRTCPKTRQTLAH 321 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~d---------Pv~~~cg~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~ 321 (643)
...+..|+||++...+ ++..+|+|+||..||.+|.+.. ..+||.||..+..
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 4556889999998744 3566899999999999999852 3469999998763
No 74
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.11 E-value=5.2e-05 Score=82.72 Aligned_cols=272 Identities=15% Similarity=0.074 Sum_probs=167.3
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCchh----HHH-HHhcC--CcHH--HHHhCCCCChHHHHHHHHHHHHhcC-Ccc
Q 040749 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPEN----RIL-IADCG--AIPP--LVQLLPYPDSKILEHAVTAVLNLSI-DES 436 (643)
Q Consensus 367 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~----r~~-i~~~g--~i~~--Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~ 436 (643)
.-+++++++...+..++.++..+...+-.. ... +.+.| -+-. .+.++..+-.....+++..-+.++. -+.
T Consensus 237 v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sk 316 (678)
T KOG1293|consen 237 VTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASK 316 (678)
T ss_pred hhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHh
Confidence 334555677777788888777766443111 111 11222 0110 0111111111111222222233331 233
Q ss_pred hHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHhcccccc-----chhhhhccCChHHHHHHhccCChhhHHH
Q 040749 437 NKRLIAQQGAIPAIIEILQS------GSTEARENSAAALFSLSMLDE-----NKITIGLSDGIPPLVDLLQNGTIRGKKD 505 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~------~~~e~~~~Aa~~L~~Ls~~~~-----~k~~i~~~g~i~~Lv~lL~~~~~~~~~~ 505 (643)
+.....+...++.+++++.. +.++.+..++.-...+..... +++.+-+.-....+..+....+......
T Consensus 317 lq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aa 396 (678)
T KOG1293|consen 317 LQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAA 396 (678)
T ss_pred hhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHH
Confidence 44445567778888887753 344444444433333322222 2233332222233333333446666777
Q ss_pred HHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChH
Q 040749 506 AVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPK 583 (643)
Q Consensus 506 A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~ 583 (643)
|+.++.+++.. ..-+..+-+..+..+|++++.+++..+...++++|.|+.. ...-+..+...|+|..+..++.+.++.
T Consensus 397 a~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n 476 (678)
T KOG1293|consen 397 ALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFN 476 (678)
T ss_pred HHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCch
Confidence 77777776632 1112223446688999999999999999999999999976 677899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 584 NKECATAVLLELGANNSSFILAAL-QYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 584 ~~e~A~~~L~~L~~~~~~~~~~~~-~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
.+.+++|+|.++.-++.+..+... ..=....+..+..+.+..+++.+-.+||+|-
T Consensus 477 ~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~ 532 (678)
T KOG1293|consen 477 SRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT 532 (678)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence 999999999999988776555443 3334667888999999999999999999884
No 75
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.3e-06 Score=84.84 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=46.6
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHH-HHhcCCCCCCCcCcccccCCC
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQK-WFDSNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~-~~~~~~~~cP~~~~~l~~~~l 324 (643)
..+|.|+||++.+.+|+.++|||.||..||-. |-.+....||.|++......+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 46899999999999999999999999999999 888776679999987665443
No 76
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00014 Score=84.18 Aligned_cols=235 Identities=17% Similarity=0.153 Sum_probs=153.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-chHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SNKRLI 441 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~k~~i 441 (643)
..+.+-.+|.|.+|..|..|+.+|..++.+..+.-.... ...++..++.|..+++.+|..|+.+++.++.+= ..-..-
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence 466677788899999999999999999854433222211 347888899999999999999999999999853 223333
Q ss_pred HhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhc--cCChH-HHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749 442 AQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGL--SDGIP-PLVDLLQNGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~-~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 517 (643)
...-.++.|+..+.+. +++++.+|+.+|.|++..-.. ..+.- .+.+. .+..++.++++.+++.++++|...+...
T Consensus 428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA 506 (1075)
T KOG2171|consen 428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA 506 (1075)
T ss_pred HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 3455777888888764 689999999999999864322 22221 35555 3334556789999999999999888654
Q ss_pred cchHHHHHcCChHHHHHHhccCC-hhhHHHHHHHHHHHhC--ChhhHHHhhc--CCcHHHHHHH---HhcCChHHHHHHH
Q 040749 518 ANKARAIDAGIVLPLMNLLEERN-LGMVDEALSILLLLAT--HPEGRHKIGQ--LSFIETLVEY---IREGTPKNKECAT 589 (643)
Q Consensus 518 ~n~~~lv~~G~v~~Lv~lL~~~~-~~~~~~Al~~L~~La~--~~~~~~~i~~--~g~i~~Lv~l---L~~~s~~~~e~A~ 589 (643)
+..-.=--.-.+|.|.++|...+ .+.++....++..++. ..-|++.+.. ..++..+..+ ....+...++.-.
T Consensus 507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~ 586 (1075)
T KOG2171|consen 507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI 586 (1075)
T ss_pred hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence 44322222446777888876633 4444444433333322 2345555544 1334444444 2223455667777
Q ss_pred HHHHHHhcCC
Q 040749 590 AVLLELGANN 599 (643)
Q Consensus 590 ~~L~~L~~~~ 599 (643)
..-.++|+.-
T Consensus 587 ~~warmc~il 596 (1075)
T KOG2171|consen 587 AFWARMCRIL 596 (1075)
T ss_pred HHHHHHHHHh
Confidence 7777777643
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=98.07 E-value=0.00022 Score=79.93 Aligned_cols=233 Identities=18% Similarity=0.152 Sum_probs=164.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchh---HHHHHhcCCcHHHHHhCCCC-------ChHHHHHHHHHHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPEN---RILIADCGAIPPLVQLLPYP-------DSKILEHAVTAVLN 430 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~---r~~i~~~g~i~~Lv~lL~~~-------d~~~~~~a~~~L~n 430 (643)
...+...+.+|++.+.+.+--++--+.++.+.++.. ++.+.++=+.+.|-++|.++ ....+.-|+.+|..
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 356888999999988777778888888998776633 44577777788899999873 34567789999999
Q ss_pred hcCCcchH--HHHHhcCChHHHHHHhcCCCH-HHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHH
Q 040749 431 LSIDESNK--RLIAQQGAIPAIIEILQSGST-EARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV 507 (643)
Q Consensus 431 Ls~~~~~k--~~i~~~g~i~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~ 507 (643)
++.+++.. ..+ .+-||.|++++.+.+. ++...|..+|..++..++.+..+.+.|+++.|++.+.+ ....+..|+
T Consensus 84 f~~~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 84 FCRDPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred HcCChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 99877653 334 3569999999987776 99999999999999999999999999999999999987 566788999
Q ss_pred HHHHHhccCCcchHHHH----HcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHhhcCCc----HHHHHHHH
Q 040749 508 TALFNLSLNQANKARAI----DAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG--RHKIGQLSF----IETLVEYI 577 (643)
Q Consensus 508 ~aL~nLs~~~~n~~~lv----~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~~g~----i~~Lv~lL 577 (643)
.++.+++........-- -..+++.+...+.......+-.++..|..+-...+. ......... ...|..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 99999876443211000 023445555555554445566677778777554321 122222233 34455566
Q ss_pred hcC-ChHHHHHHHHHHHHHh
Q 040749 578 REG-TPKNKECATAVLLELG 596 (643)
Q Consensus 578 ~~~-s~~~~e~A~~~L~~L~ 596 (643)
++. ++..|..|+.+...|.
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 553 4666666655554443
No 78
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2e-06 Score=91.08 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=57.6
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhc----CCCCCCCcCcccccCCCCcc----HHHHHHHHHHHHhcccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDS----NHRTCPKTRQTLAHLSIAPN----YALKNLILQWCEKNNFK 344 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~l~pn----~~l~~~i~~~~~~~~~~ 344 (643)
+..||||++...-|+.+.|||.||..||-++|.. +...||.|+..+...++.|- ..-+.-+...+..||.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~~ 264 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGIP 264 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCCC
Confidence 7899999999999999999999999999999984 45679999999888776653 22334467778888843
No 79
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.05 E-value=0.00017 Score=78.72 Aligned_cols=152 Identities=16% Similarity=0.103 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHH
Q 040749 456 SGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLM 533 (643)
Q Consensus 456 ~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv 533 (643)
..+...+..|+-++.+++.. +..+.-.....++.+||.++..++..++..++++|.||.. ..+-+..+++.|+|..+.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 34455555555555555422 2333334456789999999999999999999999999986 667799999999999999
Q ss_pred HHhccCChhhHHHHHHHHHHHhCChhhH--HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040749 534 NLLEERNLGMVDEALSILLLLATHPEGR--HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL 607 (643)
Q Consensus 534 ~lL~~~~~~~~~~Al~~L~~La~~~~~~--~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~ 607 (643)
+++.+.+..++..++++|.++.-+.+.. .+....=....++.+..+.++.++|.+...|.|+.++..+.+..++
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 9999999999999999999998754433 3333323345677788889999999999999999888665554444
No 80
>PF05536 Neurochondrin: Neurochondrin
Probab=98.03 E-value=8.8e-05 Score=83.02 Aligned_cols=189 Identities=19% Similarity=0.166 Sum_probs=134.3
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccccc----chhhhhccCChHHHHHHhccC-------ChhhHHHHHHHHHHhc
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDE----NKITIGLSDGIPPLVDLLQNG-------TIRGKKDAVTALFNLS 514 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~aL~nLs 514 (643)
.+...+.+|+..+.+-|-.+...+.++...++ .+..+.+.=+.+.|-+||+++ ....+.-|+..|..+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 46777889988886666677777778775443 233466665578899999874 2455667788888888
Q ss_pred cCCcch--HHHHHcCChHHHHHHhccCCh-hhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749 515 LNQANK--ARAIDAGIVLPLMNLLEERNL-GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV 591 (643)
Q Consensus 515 ~~~~n~--~~lv~~G~v~~Lv~lL~~~~~-~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 591 (643)
..++.. .+++ +-||.|++.+...+. .++..|+.+|..++.+++|++.+.+.|+++.|++.+.+ .+...+.|+.+
T Consensus 86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l 162 (543)
T PF05536_consen 86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL 162 (543)
T ss_pred CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence 865553 3344 469999999988666 99999999999999999999999999999999999987 67889999999
Q ss_pred HHHHhcCCHHHHHHHHH---CCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 592 LLELGANNSSFILAALQ---YGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 592 L~~L~~~~~~~~~~~~~---~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
|.+++.........-.. ..+++.|...........|-.+..+|..+
T Consensus 163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~ 211 (543)
T PF05536_consen 163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF 211 (543)
T ss_pred HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence 99998754421111000 12344454444444444444455555443
No 81
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00016 Score=80.14 Aligned_cols=213 Identities=20% Similarity=0.145 Sum_probs=165.9
Q ss_pred CcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhcccccc----
Q 040749 405 AIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG--STEARENSAAALFSLSMLDE---- 477 (643)
Q Consensus 405 ~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~---- 477 (643)
.|+.|+.-+.+ .-.+-|..|+..|-.+|. .+|..+ .+.++++|+++|..+ ++++...+..++.++...++
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v 99 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV 99 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence 35555554443 345668889999988873 344444 456799999999865 68999999999999876653
Q ss_pred ---ch----------h-hhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc--hHH-HHHcCChHHHHHHhccCC
Q 040749 478 ---NK----------I-TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN--KAR-AIDAGIVLPLMNLLEERN 540 (643)
Q Consensus 478 ---~k----------~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n--~~~-lv~~G~v~~Lv~lL~~~~ 540 (643)
.+ . .|-..+.|..|+..+...+-.++..|...|.+|..+.+- +.. ++-.-+|..|+.+|.+..
T Consensus 100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr 179 (970)
T KOG0946|consen 100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR 179 (970)
T ss_pred cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence 22 1 122478899999999999999999999999998765444 333 344778999999999988
Q ss_pred hhhHHHHHHHHHHHhCChhhHHHhhc-CCcHHHHHHHHhc-C-C--hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHH
Q 040749 541 LGMVDEALSILLLLATHPEGRHKIGQ-LSFIETLVEYIRE-G-T--PKNKECATAVLLELGANNSSFILAALQYGVYEHL 615 (643)
Q Consensus 541 ~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~~-~-s--~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 615 (643)
+.++.+++-.|..|.......+.++. .+++..|..++.. | . .-+.+-|+..|.+|-.++..+...+.+.+.+|.|
T Consensus 180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL 259 (970)
T KOG0946|consen 180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL 259 (970)
T ss_pred hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence 89999999999999986655555554 6899999999985 2 2 3468899999999999999999999999999999
Q ss_pred HHHhh
Q 040749 616 IQLTE 620 (643)
Q Consensus 616 ~~ll~ 620 (643)
..++.
T Consensus 260 ~klL~ 264 (970)
T KOG0946|consen 260 LKLLS 264 (970)
T ss_pred HhhcC
Confidence 97763
No 82
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.01 E-value=7.3e-06 Score=82.99 Aligned_cols=53 Identities=21% Similarity=0.420 Sum_probs=42.5
Q ss_pred CccccccCccc-ccCce---ec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC
Q 040749 273 HEFLCPITLEI-MRDPV---II-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA 325 (643)
Q Consensus 273 ~~f~CpIc~~~-m~dPv---~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 325 (643)
++..||+|... ...|- .+ +|||.||.+|+.++|..+...||.|+.++....+.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr 59 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR 59 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence 45789999984 33452 23 79999999999999988878899999999877643
No 83
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=1.1e-06 Score=88.59 Aligned_cols=69 Identities=20% Similarity=0.393 Sum_probs=57.7
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC-CCCccHHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL-SIAPNYALKNLILQWC 338 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~ 338 (643)
.+..+|.||||+++++...++ .|+|.||+.||-+-+..++..||.|++.+.+. .+.+++..-.+|.+.-
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 466789999999999998887 49999999999999999999999999998754 5666666666776544
No 84
>PTZ00429 beta-adaptin; Provisional
Probab=98.01 E-value=0.0012 Score=76.35 Aligned_cols=253 Identities=15% Similarity=0.116 Sum_probs=168.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
++.+..+-..|.+.+...++.|++.+-.....+.+. ..+.+..++++.+.|.+++.-..-.|.+.+........
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 456777778888888888888887544333222221 12556778889999999998888888888764433322
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
+ ++..+.+=+.+.++.+|..|+.+|+++-...- -.-.++++.+.+.+.++-+++.|+.++..+-...+.
T Consensus 105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i------~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe- 173 (746)
T PTZ00429 105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSV------LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ- 173 (746)
T ss_pred H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-
Confidence 2 46677778888899999999999998743211 122456677778888999999999999998654442
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.+.+.|.++.|.++|.+.++.++.+|+.+|..+.......-. ...+.+..|+..+...++..+-..+.+|.. ..|
T Consensus 174 -lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P 248 (746)
T PTZ00429 174 -LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRP 248 (746)
T ss_pred -cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCC
Confidence 234678889999999999999999999999999764322211 223456667777766677777666555533 322
Q ss_pred HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
...... ..++..+...+++.++.+.-.|.+++-.+
T Consensus 249 ~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 249 SDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred CCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 111111 23455555555555655555555544433
No 85
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.99 E-value=5e-06 Score=59.79 Aligned_cols=41 Identities=27% Similarity=0.538 Sum_probs=34.8
Q ss_pred ccccCcccc---cCceecCCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749 276 LCPITLEIM---RDPVIIASGQTFERESVQKWFDSNHRTCPKTRQ 317 (643)
Q Consensus 276 ~CpIc~~~m---~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~ 317 (643)
.|++|.+.+ ..|++++|||+||..|+.++. .....||.|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 489999999 357888999999999999998 44568999974
No 86
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.96 E-value=0.00068 Score=73.14 Aligned_cols=208 Identities=14% Similarity=0.009 Sum_probs=96.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHh
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ 443 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~ 443 (643)
+..++..|.+.++.++..++..|..+- ..+..+.|+.+|+++++.++..++.++.. ..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~ 145 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HR 145 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hc
Confidence 444555555444445555544444332 11234455555555555555554444433 11
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHH
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA 523 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~l 523 (643)
....+.++.+|++.++.++..|+.+|..+- ...+++.|...+.+.++.++..|+.++..+-.
T Consensus 146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-------- 207 (410)
T TIGR02270 146 HDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-------- 207 (410)
T ss_pred cChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence 123345555555555555555555555442 23344555555555555555555555533321
Q ss_pred HHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH
Q 040749 524 IDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFI 603 (643)
Q Consensus 524 v~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~ 603 (643)
..++..+..+...........+..++... .. ...+..|..+++. +.++..++.+|..+..
T Consensus 208 --~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~---------~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~------ 267 (410)
T TIGR02270 208 --RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG---------PDAQAWLRELLQA--AATRREALRAVGLVGD------ 267 (410)
T ss_pred --HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc---------hhHHHHHHHHhcC--hhhHHHHHHHHHHcCC------
Confidence 11222333322222222222222222221 11 1344555555544 2366666666655532
Q ss_pred HHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 604 LAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 604 ~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
...++.|+..+.+. ..++.|...++.+-
T Consensus 268 -----p~av~~L~~~l~d~--~~aR~A~eA~~~It 295 (410)
T TIGR02270 268 -----VEAAPWCLEAMREP--PWARLAGEAFSLIT 295 (410)
T ss_pred -----cchHHHHHHHhcCc--HHHHHHHHHHHHhh
Confidence 24677777766533 37777777776653
No 87
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.96 E-value=0.0023 Score=68.32 Aligned_cols=271 Identities=17% Similarity=0.181 Sum_probs=186.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
.+.+...+-+++.+++..+.+.+|.+. .++..-..+.+.+.=-.++..|..+ +..-+++|+..+..+.....+...+
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~ 105 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI 105 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence 334443455556888888999999888 5666777777777666667777654 3445778988888776554433333
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
..|.+..++.+..+.+...+..|..+|..++..+ ...+...|++..|++.+-++........+.++..+..++..|.
T Consensus 106 -~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~ 182 (371)
T PF14664_consen 106 -PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK 182 (371)
T ss_pred -CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence 5678899999999988999999999999998642 3445678999999999988877788888888989988888887
Q ss_pred HHHHcCChHHHHHHhccC-------Ch--hhHHHHHHHHHHHhCChhhHHHhhcC--CcHHHHHHHHhcCChHHHHHHHH
Q 040749 522 RAIDAGIVLPLMNLLEER-------NL--GMVDEALSILLLLATHPEGRHKIGQL--SFIETLVEYIREGTPKNKECATA 590 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~-------~~--~~~~~Al~~L~~La~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~~e~A~~ 590 (643)
.+...--+..++.-+.+. +. +....+..++..+-.+-.|--.+... .++..|+..|...++..|+..+.
T Consensus 183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild 262 (371)
T PF14664_consen 183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD 262 (371)
T ss_pred hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence 766544455555555432 11 12333444444443433343333332 46777777777777777777777
Q ss_pred HHHHHhc-------------------CCH-----------------------------HH----HHHHHHCCcHHHHHHH
Q 040749 591 VLLELGA-------------------NNS-----------------------------SF----ILAALQYGVYEHLIQL 618 (643)
Q Consensus 591 ~L~~L~~-------------------~~~-----------------------------~~----~~~~~~~g~i~~L~~l 618 (643)
+|..+-. +.. .+ ...+++.|.++.|+++
T Consensus 263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l 342 (371)
T PF14664_consen 263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL 342 (371)
T ss_pred HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 7665542 000 00 1123478999999999
Q ss_pred hhcC-CHHHHHHHHHHHHHHH
Q 040749 619 TEGG-TSRAQRKANALLQLIS 638 (643)
Q Consensus 619 l~~g-~~~~k~~A~~lL~~L~ 638 (643)
+.+. ++...+||.-+|..+-
T Consensus 343 i~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 343 IESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred HhcCCCchHHHHHHHHHHHHH
Confidence 9988 8889999999988653
No 88
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00062 Score=78.97 Aligned_cols=257 Identities=18% Similarity=0.199 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcC--CcHHHHHhCCCC--C--------------hHHHHHHHHHHHHhcCCcc
Q 040749 375 KLEVQKEAVRKIRLLSKENPENRILIADCG--AIPPLVQLLPYP--D--------------SKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~~--d--------------~~~~~~a~~~L~nLs~~~~ 436 (643)
+...|..|+..|..+++..|...+.....| .++.++.++-.. | ..--..|..+|-.+|.+=.
T Consensus 262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~ 341 (1075)
T KOG2171|consen 262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG 341 (1075)
T ss_pred cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence 566777888888777755443333333322 344555544321 1 0123456666666665433
Q ss_pred hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749 437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSL 515 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 515 (643)
++..+ .-.++.+-.+|.+.++.-|..+.-+|..++... .+..++. +..++.+++.|++.+++++..|+.|+..++.
T Consensus 342 g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st 418 (1075)
T KOG2171|consen 342 GKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGC-SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST 418 (1075)
T ss_pred hhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence 33322 334566667888999999998888888776421 1222233 5778888889999999999999999999986
Q ss_pred C-CcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhc---CCcHH-HHHHHHhcCChHHHHHHH
Q 040749 516 N-QANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQ---LSFIE-TLVEYIREGTPKNKECAT 589 (643)
Q Consensus 516 ~-~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~---~g~i~-~Lv~lL~~~s~~~~e~A~ 589 (643)
+ .+...+--..-+++.|+..+.+ .++.+..+|+.+|-|++..-.+ .++. .+.+. .+..++.++++.+++.++
T Consensus 419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vv 496 (1075)
T KOG2171|consen 419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAV 496 (1075)
T ss_pred hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence 4 4445555556678889999987 5668899999999888653221 1222 24444 334455678899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC-H---HHHHHHHHHHHHH
Q 040749 590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGT-S---RAQRKANALLQLI 637 (643)
Q Consensus 590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~-~---~~k~~A~~lL~~L 637 (643)
.++...+.........- -...||.|..++.+.+ . ..|.|...++..+
T Consensus 497 taIasvA~AA~~~F~pY-~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli 547 (1075)
T KOG2171|consen 497 TAIASVADAAQEKFIPY-FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI 547 (1075)
T ss_pred HHHHHHHHHHhhhhHhH-HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence 99999986433221111 1347899999998876 2 2344444444443
No 89
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.87 E-value=1.6e-05 Score=56.26 Aligned_cols=40 Identities=50% Similarity=0.765 Sum_probs=38.1
Q ss_pred CchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhc
Q 040749 393 NPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432 (643)
Q Consensus 393 ~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs 432 (643)
+++++..+++.|++|.|+++|++++.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999997
No 90
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0018 Score=67.93 Aligned_cols=238 Identities=15% Similarity=0.109 Sum_probs=176.9
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC------cch----HHHHHhcCChHHH
Q 040749 381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID------ESN----KRLIAQQGAIPAI 450 (643)
Q Consensus 381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~------~~~----k~~i~~~g~i~~L 450 (643)
..+..+..++ .-|+..-.+++.++++.|+.+|.+++.++....+..|-.|.-. .++ -..+++.++++.|
T Consensus 103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL 181 (536)
T KOG2734|consen 103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL 181 (536)
T ss_pred HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence 4555666666 6788888899999999999999999999999999999988742 222 2345578889998
Q ss_pred HHHhcCC------CHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccC--ChhhHHHHHHHHHHhccC-Ccch
Q 040749 451 IEILQSG------STEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNG--TIRGKKDAVTALFNLSLN-QANK 520 (643)
Q Consensus 451 v~lL~~~------~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~-~~n~ 520 (643)
++-+..- ......++.+++-|+... ++....+++.|.+..|+.-+... -..-+..|...|.-+..+ ++|+
T Consensus 182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~ 261 (536)
T KOG2734|consen 182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR 261 (536)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence 8866532 234567788888888755 45666777788888888755433 234566777777766554 4577
Q ss_pred HHHHHcCChHHHHHHhcc---C------ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749 521 ARAIDAGIVLPLMNLLEE---R------NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV 591 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~---~------~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 591 (643)
...-...++..+++-+.- . ...+.++-...|+.+-..++++..+....++....-+++. ....+..|+.+
T Consensus 262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 777788888888877642 2 3456777888888888899999999998888877777765 44567889999
Q ss_pred HHHHhcCCH--HHHHHHHHCCcHHHHHHHhh
Q 040749 592 LLELGANNS--SFILAALQYGVYEHLIQLTE 620 (643)
Q Consensus 592 L~~L~~~~~--~~~~~~~~~g~i~~L~~ll~ 620 (643)
|-....+.+ .+|...++.++...++.+-.
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 999887765 78888888877777776554
No 91
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.83 E-value=1.7e-05 Score=63.81 Aligned_cols=39 Identities=36% Similarity=0.764 Sum_probs=31.9
Q ss_pred cccCcccccCc-------------eecCCCCccchHHHHHHHhcCCCCCCCcC
Q 040749 277 CPITLEIMRDP-------------VIIASGQTFERESVQKWFDSNHRTCPKTR 316 (643)
Q Consensus 277 CpIc~~~m~dP-------------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~ 316 (643)
|+||++.+.+| +..+|||.|...||.+|+..+. +||.|+
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 99999999433 3347999999999999998755 899996
No 92
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.78 E-value=0.0022 Score=67.84 Aligned_cols=187 Identities=26% Similarity=0.315 Sum_probs=140.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
..+..+++.+.+.++.++..|+..+..+.. .-++|.|..+|...++.++..|+.+|+++-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence 468899999999999999999988766552 227899999999999999999999876654
Q ss_pred HhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChh------------hHHHHHH
Q 040749 442 AQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR------------GKKDAVT 508 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~------------~~~~A~~ 508 (643)
...+++.++..|. +.+..+|..++.+|..+-. ..++.+++..+.+.... .+..++.
T Consensus 103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~ 171 (335)
T COG1413 103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE 171 (335)
T ss_pred -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence 4568899999998 4789999999999998843 44578888888775522 2333333
Q ss_pred HHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHH
Q 040749 509 ALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECA 588 (643)
Q Consensus 509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A 588 (643)
+|..+ -+...++.+..++.+....++..|...|..+.... ......+...+.+.+..++..+
T Consensus 172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~ 233 (335)
T COG1413 172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA 233 (335)
T ss_pred HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence 33322 23446788899998888889999999998887654 3455677777777777777777
Q ss_pred HHHHHHHhc
Q 040749 589 TAVLLELGA 597 (643)
Q Consensus 589 ~~~L~~L~~ 597 (643)
+..|..+..
T Consensus 234 ~~~l~~~~~ 242 (335)
T COG1413 234 LLALGEIGD 242 (335)
T ss_pred HHHhcccCc
Confidence 777665543
No 93
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=0.00034 Score=76.40 Aligned_cols=271 Identities=16% Similarity=0.125 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh----cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD----CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~ 436 (643)
...++.|.++|.+.+...+.-|..+|..++.++.+.-+.-.- .-.+|.++++.+++++.+|.+|+.++.......
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence 367999999999999899999999999999665543222111 136899999999999999999999886655432
Q ss_pred hHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749 437 NKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL 515 (643)
Q Consensus 437 ~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 515 (643)
++..+. -...+..+..+-...++++|.+.+.+|..|......|-.=.-.+.+.-.+..-++.+..+...|+.....++.
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 222222 2345666666666778999999999999987543332211114566666666677788888999998888887
Q ss_pred CCcchHHHHH--cCChHHHHHHhccCC-----------------------------------------------------
Q 040749 516 NQANKARAID--AGIVLPLMNLLEERN----------------------------------------------------- 540 (643)
Q Consensus 516 ~~~n~~~lv~--~G~v~~Lv~lL~~~~----------------------------------------------------- 540 (643)
.+--+..+.. ...+|.|+.-+...+
T Consensus 286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~ 365 (885)
T KOG2023|consen 286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA 365 (885)
T ss_pred CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence 7733333322 445666654322111
Q ss_pred ---hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh----cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH
Q 040749 541 ---LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR----EGTPKNKECATAVLLELGANNSSFILAALQYGVYE 613 (643)
Q Consensus 541 ---~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~----~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~ 613 (643)
..++...+++|-.|+. +....+++.++.+|+ +..-.+||.++-+|..++.+.-.....-+ ...+|
T Consensus 366 ~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip 437 (885)
T KOG2023|consen 366 FSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIP 437 (885)
T ss_pred cccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHH
Confidence 1122222222222221 122234555555554 44456789999999888875432111100 23688
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 614 HLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 614 ~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.|++++.+..+-+|.-..+.|...+.+
T Consensus 438 ~l~~~L~DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 438 FLLSLLDDKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred HHHHHhccCccceeeeeeeeHhhhhhh
Confidence 899999999988888888887766543
No 94
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.77 E-value=0.00089 Score=69.94 Aligned_cols=232 Identities=16% Similarity=0.140 Sum_probs=167.2
Q ss_pred HHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC--CChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749 366 SLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY--PDSKILEHAVTAVLNLSIDESNKRLIA 442 (643)
Q Consensus 366 ~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~~~~~k~~i~ 442 (643)
.+...+++ .+.+...-|+++|..+.+ -++.|..++.+.++..++..|.+ .+-.+|.+.+-+++-|+.++...+.+.
T Consensus 160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~ 238 (442)
T KOG2759|consen 160 FLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK 238 (442)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh
Confidence 34444444 566667788889998884 57899999999999999998843 377899999999999999988887777
Q ss_pred hcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccccc---chhhhh---ccCChHHHHHHhccC---ChhhHHHH------
Q 040749 443 QQGAIPAIIEILQSGS-TEARENSAAALFSLSMLDE---NKITIG---LSDGIPPLVDLLQNG---TIRGKKDA------ 506 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~---~k~~i~---~~g~i~~Lv~lL~~~---~~~~~~~A------ 506 (643)
..+.|+.|+++++... ..+....++++.|+..... .+..+. -.+.++.-++.|... +++...+.
T Consensus 239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~ 318 (442)
T KOG2759|consen 239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEK 318 (442)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999998764 5677778888999876542 222222 245566666666543 22222111
Q ss_pred -HHHHHHhccCC------------------------cchHHHHH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhC-C
Q 040749 507 -VTALFNLSLNQ------------------------ANKARAID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLAT-H 557 (643)
Q Consensus 507 -~~aL~nLs~~~------------------------~n~~~lv~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~ 557 (643)
-.-...||+.+ +|..++-+ -.++..|+++|.. .++.+..-|+.=+..... +
T Consensus 319 L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y 398 (442)
T KOG2759|consen 319 LKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY 398 (442)
T ss_pred HHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC
Confidence 11122233322 23333333 3367889999976 557777778877777776 7
Q ss_pred hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
|+|+..+.+.|+=..++++|.+.+|++|-+|+.++..|..+
T Consensus 399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998877543
No 95
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.68 E-value=2.2e-05 Score=78.95 Aligned_cols=65 Identities=15% Similarity=0.374 Sum_probs=53.3
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC----CCCccHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL----SIAPNYALKNLIL 335 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~ 335 (643)
++.....|++|..+|.|+.++ .|=||||++||-+++.. ..+||.|+-.+... .+.++..|+.++-
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy 80 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVY 80 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHH
Confidence 466778999999999999876 69999999999999998 56899997766543 4566677777663
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.68 E-value=0.0042 Score=66.28 Aligned_cols=250 Identities=13% Similarity=0.110 Sum_probs=172.3
Q ss_pred HHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC--CHHHH
Q 040749 385 KIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG--STEAR 462 (643)
Q Consensus 385 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~ 462 (643)
.|..+.+.++..|..+.-....+.+..++-+++.+++..+.+++..+..+.+.-..+...+.--.++.-|... +..-|
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER 85 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER 85 (371)
T ss_pred HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence 4444555666666555544455566554445559999999999999999998888888877666677777643 45568
Q ss_pred HHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChh
Q 040749 463 ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLG 542 (643)
Q Consensus 463 ~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~ 542 (643)
++|...+..+...+..... ...|.+.+++.+..+.+++.+..|+.+|..|+..++ ..++.+|++..|++.+.++...
T Consensus 86 ~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~ 162 (371)
T PF14664_consen 86 EQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFS 162 (371)
T ss_pred HHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHh
Confidence 8999988887655433222 246889999999999889999999999999986433 3456899999999999886666
Q ss_pred hHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC-------Ch--HHHHHHHHHHHHHhcCCHHHHHHHHH-CCcH
Q 040749 543 MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG-------TP--KNKECATAVLLELGANNSSFILAALQ-YGVY 612 (643)
Q Consensus 543 ~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-------s~--~~~e~A~~~L~~L~~~~~~~~~~~~~-~g~i 612 (643)
+.+..+.++..+-.+|..|+.+...--+..++.-..+. +. ..-..+..++..+-+.=+.......+ ..++
T Consensus 163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l 242 (371)
T PF14664_consen 163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL 242 (371)
T ss_pred HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence 88889999999999999998776533344444333221 11 12223333443333322222222222 2578
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 613 EHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 613 ~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
..|+..+...++++|+....++--+
T Consensus 243 ksLv~~L~~p~~~ir~~Ildll~dl 267 (371)
T PF14664_consen 243 KSLVDSLRLPNPEIRKAILDLLFDL 267 (371)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 8999999999999998888777654
No 97
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00091 Score=67.12 Aligned_cols=190 Identities=17% Similarity=0.160 Sum_probs=135.4
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhcc
Q 040749 407 PPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLS 485 (643)
Q Consensus 407 ~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~ 485 (643)
..++.+|.+.++.++..|+..|.+++.. ..+.... ....++.+.++++...+ .+.|+.+|.|+|.....+..+...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~ 82 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD 82 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence 3578899999999999999999999877 3343333 34567888888877655 678999999999998888888776
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH-------cCChHHHHHHhccCCh--hhHHHHHHHHHHHhC
Q 040749 486 DGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID-------AGIVLPLMNLLEERNL--GMVDEALSILLLLAT 556 (643)
Q Consensus 486 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-------~G~v~~Lv~lL~~~~~--~~~~~Al~~L~~La~ 556 (643)
.+..++.++-+.....-...+.+|.||+..+.....+.. .|.+.....+.+.+.. .-...-..+++||++
T Consensus 83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence 888888888777666777889999999988776655432 3444444444433211 335667889999999
Q ss_pred ChhhHHHhhcCCcHH--HHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 557 HPEGRHKIGQLSFIE--TLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 557 ~~~~~~~i~~~g~i~--~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.+.||..+.....++ .+..+-..++.--|...+++|.|.|....
T Consensus 162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~ 207 (353)
T KOG2973|consen 162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK 207 (353)
T ss_pred hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch
Confidence 999999998876332 22222222333446678888999886543
No 98
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.0009 Score=71.97 Aligned_cols=231 Identities=19% Similarity=0.177 Sum_probs=160.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSK---ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k 438 (643)
....-|...|...+.+++.-+-..+..+.. .+|..- --...++.++.-+.++++.+|..|+.-+..+..-....
T Consensus 208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~ 284 (675)
T KOG0212|consen 208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD 284 (675)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence 456778889998888888544443333321 233221 11246888999999999999999998888877654444
Q ss_pred HHHHhcCChHHHHHHhcCCCH-HHHHHHHHH---HHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749 439 RLIAQQGAIPAIIEILQSGST-EARENSAAA---LFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~-e~~~~Aa~~---L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 514 (643)
....-+|.+..++..+.+... .+++.+.-+ |..+...+..+..+--...+..|...+.++..+.+..++..+..|-
T Consensus 285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~ 364 (675)
T KOG0212|consen 285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLY 364 (675)
T ss_pred hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 444467778888887766543 244433322 3334333333333322345778888888889999999999999998
Q ss_pred cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 515 ~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
...++..-.-...+.+.|++-|.+++..++..++.+++++|.++..... -.++..|+++......-....+.-++..
T Consensus 365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRq 441 (675)
T KOG0212|consen 365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQ 441 (675)
T ss_pred hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence 8878776666688999999999999999999999999999997755411 1234455555555555667788888899
Q ss_pred HhcC
Q 040749 595 LGAN 598 (643)
Q Consensus 595 L~~~ 598 (643)
||..
T Consensus 442 lC~l 445 (675)
T KOG0212|consen 442 LCLL 445 (675)
T ss_pred HHHH
Confidence 9864
No 99
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.60 E-value=0.0044 Score=68.08 Aligned_cols=257 Identities=15% Similarity=0.199 Sum_probs=167.9
Q ss_pred HHHHHHhhccCchhHHHHHhcCCcHHHHHhC----------CCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHH
Q 040749 383 VRKIRLLSKENPENRILIADCGAIPPLVQLL----------PYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAII 451 (643)
Q Consensus 383 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv 451 (643)
+.+|+.++ .++.+-..+....++..|.++= ...+..+...|+.+|+|+-.. +..|..+++.|+.+.++
T Consensus 2 L~~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 45666666 3455555555555555555533 345788999999999999875 45688888999999999
Q ss_pred HHhcCC-----CHHHHHHHHHHHHhcccc-ccchhhhhc-cCChHHHHHHhccC-----------------ChhhHHHHH
Q 040749 452 EILQSG-----STEARENSAAALFSLSML-DENKITIGL-SDGIPPLVDLLQNG-----------------TIRGKKDAV 507 (643)
Q Consensus 452 ~lL~~~-----~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~-~g~i~~Lv~lL~~~-----------------~~~~~~~A~ 507 (643)
..|+.. +.+..-....+||-++.. .+.+..+.. .+++..++..|... +......++
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL 160 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL 160 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence 999876 688889999999988754 456666655 57777777765311 123356788
Q ss_pred HHHHHhccCCcchHHHHHcCChHHHHHHhcc---------CChhhHHHHHHHHHHHhC-Chhh-------HHH----hhc
Q 040749 508 TALFNLSLNQANKARAIDAGIVLPLMNLLEE---------RNLGMVDEALSILLLLAT-HPEG-------RHK----IGQ 566 (643)
Q Consensus 508 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La~-~~~~-------~~~----i~~ 566 (643)
..+||+..+......--..+.++.++.++.. +.......++.+|.|+-- +.+. ... ...
T Consensus 161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~ 240 (446)
T PF10165_consen 161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN 240 (446)
T ss_pred HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence 9999998655443322234445555555432 223556777788877722 1111 000 122
Q ss_pred CCcHHHHHHHHhcC----C----hHHHHHHHHHHHHHhcCCHHHHHHHHH----------------CCcHHHHHHHhhcC
Q 040749 567 LSFIETLVEYIREG----T----PKNKECATAVLLELGANNSSFILAALQ----------------YGVYEHLIQLTEGG 622 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~----s----~~~~e~A~~~L~~L~~~~~~~~~~~~~----------------~g~i~~L~~ll~~g 622 (643)
...+..|+.+|... . ...-.--+.+|..++..+...+..+.. ...-..|++++.+.
T Consensus 241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~ 320 (446)
T PF10165_consen 241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP 320 (446)
T ss_pred hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence 34577778777631 1 123344566677777766544444332 34577999999999
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 040749 623 TSRAQRKANALLQLISKS 640 (643)
Q Consensus 623 ~~~~k~~A~~lL~~L~~~ 640 (643)
.+.+|..+..+|..||+.
T Consensus 321 ~~~~k~~vaellf~Lc~~ 338 (446)
T PF10165_consen 321 DPQLKDAVAELLFVLCKE 338 (446)
T ss_pred CchHHHHHHHHHHHHHhh
Confidence 999999999999999864
No 100
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.55 E-value=9.8e-05 Score=72.55 Aligned_cols=72 Identities=19% Similarity=0.346 Sum_probs=59.0
Q ss_pred CCCCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcc-cccCCCCccHHHHHHHHHHHHhc
Q 040749 268 SLVIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQT-LAHLSIAPNYALKNLILQWCEKN 341 (643)
Q Consensus 268 ~~~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~-l~~~~l~pn~~l~~~i~~~~~~~ 341 (643)
..+++ +.||.|..++++|+-+ .|||+||..||+.-+-...+.||.|... +--..+.|++..+.-|+.+...+
T Consensus 270 ~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq 343 (427)
T COG5222 270 PPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ 343 (427)
T ss_pred CCCcc--ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence 34444 9999999999999988 6999999999999888777899999653 44556899988888888876643
No 101
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.01 Score=68.08 Aligned_cols=257 Identities=19% Similarity=0.252 Sum_probs=171.9
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 363 EIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 363 ~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
..+.+...|. ..++.+|.-|+..+..+. .+.+.-.-++..|.+..|+.+|.+ -+..++.++.+|..|+.+.+.-..-
T Consensus 1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred ccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence 3455556665 357788988998888776 567788888999999999999876 5778999999999999988775555
Q ss_pred HhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccc--cchhhhhc------------cCChHHHHHHhccC--Chh---
Q 040749 442 AQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLD--ENKITIGL------------SDGIPPLVDLLQNG--TIR--- 501 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~------------~g~i~~Lv~lL~~~--~~~--- 501 (643)
++.|++.-|..++-. .++..|..||..|..|..+. ..|..|.- .+.-.+.|.++... +++
T Consensus 1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence 688888888887754 46788888888888886542 12222110 01113333333221 110
Q ss_pred ---hHHHH------------------------------------------------------------------------
Q 040749 502 ---GKKDA------------------------------------------------------------------------ 506 (643)
Q Consensus 502 ---~~~~A------------------------------------------------------------------------ 506 (643)
.+...
T Consensus 1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence 00000
Q ss_pred ----------------HHHHHHhccCCcc-hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc
Q 040749 507 ----------------VTALFNLSLNQAN-KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF 569 (643)
Q Consensus 507 ----------------~~aL~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~ 569 (643)
..|+..|...+++ ..++-..|.+|.++..+...+..+-..|+.+|..|+.+.-+..++....+
T Consensus 2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence 0011111111111 22223367777777776655555567799999999999999999999888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhhcC
Q 040749 570 IETLVEYIREGTPKNKECATAVLLELGANN-SSFILAALQYGVYEHLIQLTEGG 622 (643)
Q Consensus 570 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g 622 (643)
+..++..|.. .+...-.|+.+|-.+...+ .+.+...+..|.++.|+.++...
T Consensus 2090 i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2090 IDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred chhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 8888888864 2344447888888776544 45667788899999999999643
No 102
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.54 E-value=0.0005 Score=68.52 Aligned_cols=181 Identities=14% Similarity=0.096 Sum_probs=116.1
Q ss_pred cCCCHHHHHHHHHHHHhccccc---cchhhhhc--cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCCh
Q 040749 455 QSGSTEARENSAAALFSLSMLD---ENKITIGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIV 529 (643)
Q Consensus 455 ~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v 529 (643)
.+.+++.+..|...|..+.... +....+.. ...+..++..+.+....+.+.|+.++..|+..-.+.-.-.-..++
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL 96 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 4567999999999998887544 23333332 255567777777767778899999999988654443332334578
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc-HHHHHHHHhcCChHHHHHHHHHHHHHhcCCH---HHHHH
Q 040749 530 LPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF-IETLVEYIREGTPKNKECATAVLLELGANNS---SFILA 605 (643)
Q Consensus 530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~-i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~---~~~~~ 605 (643)
|.|++.+.++...+.+.|..+|..++.+-..- ..+ ++.+...+.+.++..|..++..|..+....+ .....
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 89999998888889999999999998754311 123 4556667778899999999999988876554 11111
Q ss_pred -HHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 606 -ALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 606 -~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
..-..+++.+...+.++++.+|+.|..++..+.++
T Consensus 172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 11134788888999999999999999999988754
No 103
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.53 E-value=9.3e-05 Score=52.26 Aligned_cols=40 Identities=35% Similarity=0.551 Sum_probs=37.3
Q ss_pred CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749 434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 473 (643)
+++++..+++.|+++.|+.+|++++.+++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3578889999999999999999999999999999999986
No 104
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.52 E-value=5.9e-05 Score=80.96 Aligned_cols=67 Identities=30% Similarity=0.604 Sum_probs=55.9
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc-cHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP-NYALKNLILQW 337 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~ 337 (643)
.+.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......| ....+..+..|
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l 85 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL 85 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence 367789999999999999995 99999999999999998 678999988888776665 34555666554
No 105
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=7.2e-05 Score=79.21 Aligned_cols=71 Identities=28% Similarity=0.474 Sum_probs=57.1
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC-----CCccHHHHHHHHHHHHh
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS-----IAPNYALKNLILQWCEK 340 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~-----l~pn~~l~~~i~~~~~~ 340 (643)
..++.+|.|-||...+.+||++||||+||..||.+-++. ...||.|+..+.... ..+|+.+..+|..|+..
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 456889999999999999999999999999999997774 446999998887521 22466677777777654
No 106
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.0096 Score=60.28 Aligned_cols=278 Identities=13% Similarity=0.126 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHH--HhCCCCChHHHHHHHHHHHHhcC-Ccc
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV--QLLPYPDSKILEHAVTAVLNLSI-DES 436 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv--~lL~~~d~~~~~~a~~~L~nLs~-~~~ 436 (643)
+.+..+.++..+-..+.++-..|.+.|..++ .-+..-..|.+......+- ++-...+.-++...+..+..++. ++.
T Consensus 126 NaeilklildcIggeddeVAkAAiesikria-lfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 126 NAEILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE 204 (524)
T ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence 4567788888888889999999999999998 4566666666665555442 22223344456666666666654 555
Q ss_pred hHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhHHHHH----HH
Q 040749 437 NKRLIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGKKDAV----TA 509 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~----~a 509 (643)
.-...-..|.+..|..-|+. .+.-++.++......|...+..+..+...|.|..+.+++... ++-.+..++ +.
T Consensus 205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf 284 (524)
T KOG4413|consen 205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF 284 (524)
T ss_pred HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence 56666678988888888875 456678899999999999988988888899999999988543 222222222 22
Q ss_pred HHHhccCCcchHHHHHc--CChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc--HHHHH-HHHhcCChHH
Q 040749 510 LFNLSLNQANKARAIDA--GIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF--IETLV-EYIREGTPKN 584 (643)
Q Consensus 510 L~nLs~~~~n~~~lv~~--G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~--i~~Lv-~lL~~~s~~~ 584 (643)
+.+....+-.-..++++ -+|....+++...+++.++.|+.++..|.++-+|+..+...|- ...++ ...+.....-
T Consensus 285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak 364 (524)
T KOG4413|consen 285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK 364 (524)
T ss_pred hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence 33333333222222221 2344456667678999999999999999999999999988764 33333 3333333344
Q ss_pred HHHHHHHHHHHhcC---CHHHH---------H-HHH----H---CCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 585 KECATAVLLELGAN---NSSFI---------L-AAL----Q---YGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 585 ~e~A~~~L~~L~~~---~~~~~---------~-~~~----~---~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
++.++.+|.+++.. .++.. . .+. + ..-...+..+++...++++-.|.+.+..+.
T Consensus 365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia 438 (524)
T KOG4413|consen 365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA 438 (524)
T ss_pred HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence 66677777777642 11111 0 111 1 133455566777778888877777776654
No 107
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.47 E-value=0.013 Score=63.24 Aligned_cols=152 Identities=19% Similarity=0.078 Sum_probs=102.4
Q ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 362 EEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
..++.++..|. ..+.++...++..+... .++. ++..|+..|...++.++..++.+|..+
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i--------- 113 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL--------- 113 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence 45777777774 44555555444443321 2211 377888888888888888888887643
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
...++.+.|+.+|++.++.++..++.++..- .....+.+..+|++.++.++..|+.+|..|-
T Consensus 114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------ 175 (410)
T TIGR02270 114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP------ 175 (410)
T ss_pred -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc------
Confidence 2456677888888888888877766665541 1234577888888888888888888887664
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA 555 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La 555 (643)
....++.|...+.+.++.++..|+..+..+.
T Consensus 176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 2345666777787888888888888886553
No 108
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.029 Score=59.12 Aligned_cols=238 Identities=20% Similarity=0.196 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc---------hhHHHHHhcCCcHHHHHhCCCCCh------HHHHHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP---------ENRILIADCGAIPPLVQLLPYPDS------KILEHA 424 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~---------~~r~~i~~~g~i~~Lv~lL~~~d~------~~~~~a 424 (643)
+-++++.|+++|...+.++....+.-+..|...+. ..-..+++.++++.|++-+..-|. .-..++
T Consensus 123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 34678999999999999999999999998884332 123456677899999887764333 345677
Q ss_pred HHHHHHhcC-CcchHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhc----
Q 040749 425 VTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSG--STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQ---- 496 (643)
Q Consensus 425 ~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~---- 496 (643)
+..+-|+.. .+.....+++.|.+..|+.-+... -..-+.+|..+|.-+..+. +++...+.-.+|..+++-+.
T Consensus 203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~ 282 (536)
T KOG2734|consen 203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR 282 (536)
T ss_pred HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence 888889887 455677778888888888866543 2445778888888776554 58888888888888887663
Q ss_pred cC-----ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh---HHHhhcCC
Q 040749 497 NG-----TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG---RHKIGQLS 568 (643)
Q Consensus 497 ~~-----~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~---~~~i~~~g 568 (643)
++ ..+...+--.+|+.+...+.|+.+++...+++...-+++. .......++.+|-....++++ ...+++..
T Consensus 283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l 361 (536)
T KOG2734|consen 283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL 361 (536)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 22 1244556666777777899999999998888877766765 445566789999888776654 55667777
Q ss_pred cHHHHHHHHh---------cCC-hHHHHHHHHHHHHHhcC
Q 040749 569 FIETLVEYIR---------EGT-PKNKECATAVLLELGAN 598 (643)
Q Consensus 569 ~i~~Lv~lL~---------~~s-~~~~e~A~~~L~~L~~~ 598 (643)
++..+..+.. ..+ ...-++..++|+++-.+
T Consensus 362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~ 401 (536)
T KOG2734|consen 362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN 401 (536)
T ss_pred hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence 7777766543 122 33467788888877654
No 109
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.44 E-value=0.00021 Score=74.11 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=45.9
Q ss_pred cccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749 275 FLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326 (643)
Q Consensus 275 f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 326 (643)
+.|.|++++-++||+-+ +||.|+|+-|++++.+.. +||.++++++..+++|
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G-~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETG-KDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHHcC-CCCCCCCcCCHHHeee
Confidence 46999999999999976 999999999999999854 7999999999877766
No 110
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.43 E-value=0.0008 Score=67.02 Aligned_cols=181 Identities=18% Similarity=0.139 Sum_probs=116.3
Q ss_pred hcCCCHHHHHHHHHHHHHhhccC--chhHHHHHh--cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-HHHHHhcC
Q 040749 371 LSSSKLEVQKEAVRKIRLLSKEN--PENRILIAD--CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-KRLIAQQG 445 (643)
Q Consensus 371 L~s~~~~~~~~A~~~L~~L~~~~--~~~r~~i~~--~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~~i~~~g 445 (643)
-.+.+|+.+.+|+..|+.+.+.+ ......+.+ ...+..++..+.+....+...|+.++..++..-.. -..+ -..
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~ 94 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI 94 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence 35789999999999999999877 333344333 25677888888877888999999999999864322 2222 345
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCC-hHHHHHHhccCChhhHHHHHHHHHHhccCCc-chHHH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQA-NKARA 523 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~-i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~l 523 (643)
.+|.|++.+.++...+++.|..+|..+...-... ... ++.+...+.+.++.++..++..|..+..... +...+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 7899999999888889999999998886543211 122 4666667788899999999999988765433 11111
Q ss_pred HH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749 524 ID----AGIVLPLMNLLEERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 524 v~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 557 (643)
-. ..+++.+...+.+.++++++.|-.+++.+...
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH 207 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 34678888999999999999999999998663
No 111
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.42 E-value=0.00045 Score=57.48 Aligned_cols=86 Identities=37% Similarity=0.506 Sum_probs=70.3
Q ss_pred cHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc
Q 040749 406 IPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL 484 (643)
Q Consensus 406 i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 484 (643)
||.|++.| +++++.++..++.+|+++- ...+++.|+.+++++++.++..|+.+|..+ +.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~ 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence 58899988 8889999999999998543 234689999999999999999999999987 34
Q ss_pred cCChHHHHHHhccCC-hhhHHHHHHHHH
Q 040749 485 SDGIPPLVDLLQNGT-IRGKKDAVTALF 511 (643)
Q Consensus 485 ~g~i~~Lv~lL~~~~-~~~~~~A~~aL~ 511 (643)
..+++.|..++.+++ ..++..|+.+|.
T Consensus 61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 668999999998764 455788887763
No 112
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0061 Score=66.95 Aligned_cols=267 Identities=13% Similarity=0.068 Sum_probs=172.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
+..++.+++..+++++.+|..|+.++-...-..+ ...+.. ..+++.|..+-..+++++|.+.+.+|.-|-.....|-
T Consensus 173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl 250 (885)
T KOG2023|consen 173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL 250 (885)
T ss_pred HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence 3679999999999999999999998887663322 222222 2366777777777899999999999888764322221
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccCC------------------
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNGT------------------ 499 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~------------------ 499 (643)
.=--.+++.-++..-+..+.++...|+.....++..+..+..+.. ...||.|+.-+.-.+
T Consensus 251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr 330 (885)
T KOG2023|consen 251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR 330 (885)
T ss_pred ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence 111245566666666777888888999999999988876666654 466777765332110
Q ss_pred --------------------------------------hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh----c
Q 040749 500 --------------------------------------IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL----E 537 (643)
Q Consensus 500 --------------------------------------~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL----~ 537 (643)
...++.++.+|--|+. +....+++.++.+| .
T Consensus 331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~ 403 (885)
T KOG2023|consen 331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLS 403 (885)
T ss_pred hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcC
Confidence 1123333333333321 12233445555554 4
Q ss_pred cCChhhHHHHHHHHHHHhCChhhHHHhhcC--CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHH
Q 040749 538 ERNLGMVDEALSILLLLATHPEGRHKIGQL--SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEH 614 (643)
Q Consensus 538 ~~~~~~~~~Al~~L~~La~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~ 614 (643)
+.+..+++.++-+|..+|.. +-+-+... ..+|.++.+|.+..|-+|.-++|.|...+..--.. ..... ..++..
T Consensus 404 ~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~ 480 (885)
T KOG2023|consen 404 SEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEG 480 (885)
T ss_pred cchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHH
Confidence 46777888888888888751 12223332 36888999999999999999999998765431100 11110 124555
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 615 LIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 615 L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
|..-+.+++.++|+.|......+.+
T Consensus 481 ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 481 LLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHH
Confidence 6666678999999999998877654
No 113
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=0.0048 Score=66.59 Aligned_cols=236 Identities=17% Similarity=0.139 Sum_probs=163.3
Q ss_pred CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749 404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482 (643)
Q Consensus 404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 482 (643)
+.||.|-.-+...++.++...+.-|.-|-.-++ .+.+. -...++.|..+|...+.+++..+-.+|.++-..=.++...
T Consensus 167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence 355555555555678888877776665543332 22232 3456778888999999999987777776654222222222
Q ss_pred hc-cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCCh-hhHHHHH---HHHHHHhCC
Q 040749 483 GL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNL-GMVDEAL---SILLLLATH 557 (643)
Q Consensus 483 ~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~-~~~~~Al---~~L~~La~~ 557 (643)
.+ ...++.++.-+.+..+..+..|+..|.....-+++..-.--+|++..++..+.+.++ .+.+.+. ..|..+++.
T Consensus 246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~ 325 (675)
T KOG0212|consen 246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS 325 (675)
T ss_pred cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence 23 567899999999999999999999999887766665555567888888888877554 3444433 235556666
Q ss_pred hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
+...+.+.-...+..+.+.+.+....+|-.++.-+..|-..-|.. .......+.+.|+.-+.+.++.+-..+..+|..+
T Consensus 326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i 404 (675)
T KOG0212|consen 326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI 404 (675)
T ss_pred hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence 666555332346788888888888889999998888887655432 2233467888999989889999999999999988
Q ss_pred Hhhc
Q 040749 638 SKSE 641 (643)
Q Consensus 638 ~~~~ 641 (643)
+..+
T Consensus 405 ~~s~ 408 (675)
T KOG0212|consen 405 CSSS 408 (675)
T ss_pred hcCc
Confidence 7643
No 114
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.34 E-value=0.0084 Score=65.85 Aligned_cols=230 Identities=20% Similarity=0.255 Sum_probs=153.0
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-----ChHHHHHHHHHHHHhcC-CcchHHHHH-hcC
Q 040749 373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-----DSKILEHAVTAVLNLSI-DESNKRLIA-QQG 445 (643)
Q Consensus 373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----d~~~~~~a~~~L~nLs~-~~~~k~~i~-~~g 445 (643)
+.++++..+|+++|.|....++..|..+.+.|..+.++..|+.. +.++.-...+.|.-++. ....+..++ +.+
T Consensus 43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~ 122 (446)
T PF10165_consen 43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH 122 (446)
T ss_pred CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999876 67777777777766665 445565555 568
Q ss_pred ChHHHHHHhcC-----------------CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC---------C
Q 040749 446 AIPAIIEILQS-----------------GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG---------T 499 (643)
Q Consensus 446 ~i~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~---------~ 499 (643)
++..|+..|.. .+.++...+..++||+.........--....++.++.++..- .
T Consensus 123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 88888876631 134556678899999975533322211245566666654321 2
Q ss_pred hhhHHHHHHHHHHhccCCcc--------hHH----HHHcCChHHHHHHhcc-----CC---hhhHHHHHHHHHHHhCC-h
Q 040749 500 IRGKKDAVTALFNLSLNQAN--------KAR----AIDAGIVLPLMNLLEE-----RN---LGMVDEALSILLLLATH-P 558 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n--------~~~----lv~~G~v~~Lv~lL~~-----~~---~~~~~~Al~~L~~La~~-~ 558 (643)
.....+++.+|.|+-..... ... -....++..|+.+|.. .. .....-.+.+|.+++.. .
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~ 282 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR 282 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence 35567788888877311000 000 1123356667777754 11 13445566777777764 3
Q ss_pred hhHHHhhc----------------CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 040749 559 EGRHKIGQ----------------LSFIETLVEYIREGTPKNKECATAVLLELGANNSSF 602 (643)
Q Consensus 559 ~~~~~i~~----------------~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~ 602 (643)
..|..+.. ...-..|++++.+..+..+..+...|+.||..+...
T Consensus 283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~ 342 (446)
T PF10165_consen 283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASR 342 (446)
T ss_pred HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHH
Confidence 44444321 234577899998877899999999999999876543
No 115
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.002 Score=69.03 Aligned_cols=258 Identities=16% Similarity=0.168 Sum_probs=173.3
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHhcCCCH
Q 040749 381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQSGST 459 (643)
Q Consensus 381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~ 459 (643)
.++..|..+++.-...|.-+.++..+++|+++|+.++..+.--+...++|+... +.-+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 445566666655556677777888999999999998777777778888898774 4447888899999999999998888
Q ss_pred HHHHHHHHHHHhccccccch--hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC-cc---hHHHHHcC----Ch
Q 040749 460 EARENSAAALFSLSMLDENK--ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ-AN---KARAIDAG----IV 529 (643)
Q Consensus 460 e~~~~Aa~~L~~Ls~~~~~k--~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n---~~~lv~~G----~v 529 (643)
..+.+..|+|..+-.+.++- -.....-++..++++..+....++...+..|.|+..+. .| +.-.++.- ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 89999999999998765543 34456677899999999999999999999999997532 22 21122221 23
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHh-hc-CCcHHHHHHHHhc---------CC-----------------
Q 040749 530 LPLMNLLEERNLGMVDEALSILLLLATHPEGRHKI-GQ-LSFIETLVEYIRE---------GT----------------- 581 (643)
Q Consensus 530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i-~~-~g~i~~Lv~lL~~---------~s----------------- 581 (643)
..|++.+...++-.....+.+|.+++...+....+ .+ ...+..+.++|.. |+
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~ 647 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS 647 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence 34555555566666666788887777655443333 22 2344444443310 00
Q ss_pred ---------------------------hHHHHHHHHHHHHHh---cC------CHHHHHHHHHCCcHHHHHHHhhcCCHH
Q 040749 582 ---------------------------PKNKECATAVLLELG---AN------NSSFILAALQYGVYEHLIQLTEGGTSR 625 (643)
Q Consensus 582 ---------------------------~~~~e~A~~~L~~L~---~~------~~~~~~~~~~~g~i~~L~~ll~~g~~~ 625 (643)
.+.-....|+..++. .+ ..+.++.+.+.|.-..|..+..+.++.
T Consensus 648 e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~ 727 (743)
T COG5369 648 ENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLI 727 (743)
T ss_pred ccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHH
Confidence 001111222222221 01 113455556788888888888888999
Q ss_pred HHHHHHHHHHHHH
Q 040749 626 AQRKANALLQLIS 638 (643)
Q Consensus 626 ~k~~A~~lL~~L~ 638 (643)
+++++..+|.+++
T Consensus 728 vrek~~taL~~l~ 740 (743)
T COG5369 728 VREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999999875
No 116
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.30 E-value=9.7e-05 Score=68.41 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=41.7
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+|| |.|-||.+.++.||++.|||.||..|..+-++.+ .+|-.|+....
T Consensus 194 ~IP--F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~ 241 (259)
T COG5152 194 KIP--FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATY 241 (259)
T ss_pred CCc--eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhc
Confidence 454 9999999999999999999999999988888876 47999987544
No 117
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.30 E-value=0.02 Score=60.62 Aligned_cols=158 Identities=27% Similarity=0.348 Sum_probs=119.4
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k 438 (643)
....++.+...|.+.++.++..|+..|..+- + ...++.|+.+|. +++..++..+..+|+.+-
T Consensus 72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~---------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~------ 134 (335)
T COG1413 72 SEEAVPLLRELLSDEDPRVRDAAADALGELG--D---------PEAVPPLVELLENDENEGVRAAAARALGKLG------ 134 (335)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--C---------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC------
Confidence 3578999999999999999999999777664 2 227899999999 589999999999998765
Q ss_pred HHHHhcCChHHHHHHhcCCCH------------HHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHH
Q 040749 439 RLIAQQGAIPAIIEILQSGST------------EARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDA 506 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~------------e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A 506 (643)
...++.+++..+..... ..+..++..|..+ +....++.+..++.+....++..|
T Consensus 135 ----~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~A 200 (335)
T COG1413 135 ----DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAA 200 (335)
T ss_pred ----chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHH
Confidence 34457788888876542 2333344443333 456788999999999988999999
Q ss_pred HHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 507 VTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 507 ~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
+.+|..+.... ..+.+.+...+.+.+..++..++..|..+-.
T Consensus 201 a~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~ 242 (335)
T COG1413 201 ASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence 99999887654 3455677888888888888888777776543
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.30 E-value=0.00066 Score=56.43 Aligned_cols=86 Identities=35% Similarity=0.478 Sum_probs=70.2
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749 364 IVSLVEQL-SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA 442 (643)
Q Consensus 364 i~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~ 442 (643)
|+.|++.| ++.++.++..|++.|..+.. + .++|.|+.+++++++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899999 78899999999999995531 1 35899999999999999999999998873
Q ss_pred hcCChHHHHHHhcCCC-HHHHHHHHHHHH
Q 040749 443 QQGAIPAIIEILQSGS-TEARENSAAALF 470 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L~ 470 (643)
...+++.|.+++.+++ ..++..|+.+|.
T Consensus 60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 4558999999998764 566888888763
No 119
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.29 E-value=0.0032 Score=66.26 Aligned_cols=213 Identities=16% Similarity=0.143 Sum_probs=142.4
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHH
Q 040749 374 SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE--SNKRLIAQQGAIPAII 451 (643)
Q Consensus 374 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~--~~k~~i~~~g~i~~Lv 451 (643)
..++.++..+..|.++.|++.+....+++.|++..++--.+..++.+..+++-+|.|++.+. ..+..|++..+-+.|.
T Consensus 234 e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF 313 (832)
T KOG3678|consen 234 EPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF 313 (832)
T ss_pred CcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence 46788899999999999999999999999999999999889999999999999999998854 5688888888777777
Q ss_pred HHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChh-hHHHHHHHHHHhccCCcchHHHHHcCChH
Q 040749 452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR-GKKDAVTALFNLSLNQANKARAIDAGIVL 530 (643)
Q Consensus 452 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~-~~~~A~~aL~nLs~~~~n~~~lv~~G~v~ 530 (643)
-+-.+.+.-++.+|+-+++-|+.+.+.-..+..+|.+..+-.++.+-++. ...++- .+...+ ...-++
T Consensus 314 ~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~h-------d~aQG~----~~d~Lq 382 (832)
T KOG3678|consen 314 PLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAH-------DYAQGR----GPDDLQ 382 (832)
T ss_pred hhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhh-------hhhccC----ChHHHH
Confidence 77767778889999999999988777655565666654444444443331 111111 111111 012355
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhC--ChhhHHHhh-cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 531 PLMNLLEERNLGMVDEALSILLLLAT--HPEGRHKIG-QLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 531 ~Lv~lL~~~~~~~~~~Al~~L~~La~--~~~~~~~i~-~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
.|+.+|.+...+.+.-+..-|+.=+. ...++..+. +-|+|..|-++..+.+...-..|-.+|.-+..
T Consensus 383 RLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 383 RLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 67777775433333222222211111 233444443 45888888888876554445556666665554
No 120
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00011 Score=72.94 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=44.3
Q ss_pred ccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 276 LCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 276 ~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
.|+||...+..||.++|+|.||.-||+.-+..+..+||+|+.++++.-
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 499999999999999999999999999988877889999999999753
No 121
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.016 Score=64.27 Aligned_cols=251 Identities=16% Similarity=0.219 Sum_probs=157.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
..++.|++.|..+|+.+|-.|+..|+.|++.||.|.-.+ -|.+.++|... +.-+....+...++|+--++--
T Consensus 181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL-- 253 (877)
T KOG1059|consen 181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL-- 253 (877)
T ss_pred hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchh--
Confidence 468889999999999999999999999999998876443 47788877643 5556667777778887644321
Q ss_pred HHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhccccc---cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 441 IAQQGAIPAIIEILQSGS-TEARENSAAALFSLSMLD---ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~---~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
....+++|.+++.+.. +.+...+..++-.-+... ++-..+ .-++..|-.++.+.++..++.++.|+..+...
T Consensus 254 --gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~kt 329 (877)
T KOG1059|consen 254 --GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT 329 (877)
T ss_pred --hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence 1235789999998764 344444444443332211 111111 23566666777888999999999999988754
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHHHHHHHHH
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECATAVLLEL 595 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L 595 (643)
+.. .|.+ --..+++.|.+.++.++-.|+..|..+.+.. +-.+ .+..|+..+...+ ...|..-+.-+..+
T Consensus 330 Hp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~i 399 (877)
T KOG1059|consen 330 HPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRIISI 399 (877)
T ss_pred CHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 332 1211 1245678888999999999999999887643 2222 3455665554433 35666666666777
Q ss_pred hcCCHHHHHHHHHCC-cHHHHHHHhh-cCCHHHHHHHHHHHH
Q 040749 596 GANNSSFILAALQYG-VYEHLIQLTE-GGTSRAQRKANALLQ 635 (643)
Q Consensus 596 ~~~~~~~~~~~~~~g-~i~~L~~ll~-~g~~~~k~~A~~lL~ 635 (643)
|+.+. ...+.+-. .+..|+++.. .|+.++..-|..++-
T Consensus 400 CS~sn--Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~D 439 (877)
T KOG1059|consen 400 CSQSN--YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIID 439 (877)
T ss_pred hhhhh--hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence 77643 12221211 2444445443 345555444444443
No 122
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00017 Score=74.46 Aligned_cols=47 Identities=19% Similarity=0.477 Sum_probs=40.4
Q ss_pred cccccCcccccCc---eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 275 FLCPITLEIMRDP---VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 275 f~CpIc~~~m~dP---v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
+.|-||+|-+.+- +++||+|.|...||..|+.....+||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 7999999999843 4689999999999999999876679999886553
No 123
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.26 E-value=0.015 Score=63.84 Aligned_cols=267 Identities=14% Similarity=0.107 Sum_probs=173.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHH-HHHHHHHHHhcCCcchHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL-EHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~-~~a~~~L~nLs~~~~~k~ 439 (643)
....+.+.+.+.+.....+..|.+.+..+.+++ .-..+.+.+.+..|-........... +.+.-+.-....+ -.
T Consensus 133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~---Lg 207 (569)
T KOG1242|consen 133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGN---LG 207 (569)
T ss_pred HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh---cC
Confidence 356777888888888899999999999998544 34455667788888887776543332 2222221111110 00
Q ss_pred HHHhcCChHHHHHHhc---CCCHHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749 440 LIAQQGAIPAIIEILQ---SGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL 515 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~---~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 515 (643)
...+.+.++.+-.+|. +...++|..|..+...+- ..+.+. -...+|.++.-+....++.+..++..|..+..
T Consensus 208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~ 283 (569)
T KOG1242|consen 208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMAD 283 (569)
T ss_pred CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1224555565555554 334666665555544332 111111 12345666655555588999999999999998
Q ss_pred CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC---ChhhHHH--------------------------h--
Q 040749 516 NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT---HPEGRHK--------------------------I-- 564 (643)
Q Consensus 516 ~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~---~~~~~~~--------------------------i-- 564 (643)
..+......-..++|.+.+.|.+..+++++.+..+|..+++ +++.... +
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~ 363 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA 363 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence 88888888889999999999999999999999999988875 2221111 1
Q ss_pred -hcCCcHHHHHHHHhc----CChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 565 -GQLSFIETLVEYIRE----GTPKNKECATAVLLELGANN--SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 565 -~~~g~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
+++-.+..++.+|++ .+...+..++.+..|+|.-- +......+. -++|-|...+..-.|++|.-|.+.|..+
T Consensus 364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 123344556666654 35667888999999999743 443333322 2566666777767899998888888444
No 124
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.026 Score=57.26 Aligned_cols=263 Identities=15% Similarity=0.112 Sum_probs=165.1
Q ss_pred CHHHHHHHHHHHHHhhccCchhH----HHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHH
Q 040749 375 KLEVQKEAVRKIRLLSKENPENR----ILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAI 450 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r----~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~L 450 (643)
+..++.-+++.+.-+..+.+.|- ..++++|..|.++..+..+|.++-..|...+..++..+..-..|.+....+.+
T Consensus 95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdl 174 (524)
T KOG4413|consen 95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDL 174 (524)
T ss_pred cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChH
Confidence 44445555555555554333221 23457889999999999999999999999999999998888888877776655
Q ss_pred HHH--hcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHHHc
Q 040749 451 IEI--LQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAIDA 526 (643)
Q Consensus 451 v~l--L~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv~~ 526 (643)
-.. -...+.-+|......+-.+++. ++.....-.+|.+..|..=|+. .+.-+....+...+.|......+..+...
T Consensus 175 hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe 254 (524)
T KOG4413|consen 175 HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE 254 (524)
T ss_pred HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh
Confidence 432 2223344555555555555433 2332233346777776666654 45566777888888999888888888999
Q ss_pred CChHHHHHHhccCC--hhhHHHHHHHHHHHhCChh----hHHHhhcC--CcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 527 GIVLPLMNLLEERN--LGMVDEALSILLLLATHPE----GRHKIGQL--SFIETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 527 G~v~~Lv~lL~~~~--~~~~~~Al~~L~~La~~~~----~~~~i~~~--g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
|+|+.+..++...+ +--.-.++.....+-++.. .-+++.+. -+|....+++...+|...+.|+.+|..|.++
T Consensus 255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 99999999997633 3323334444443333211 12233331 2355566777888999999999999999876
Q ss_pred CHHHHHHHHHCC--cHHHHHHHhhcCCHHHH-HHHHHHHHHHH
Q 040749 599 NSSFILAALQYG--VYEHLIQLTEGGTSRAQ-RKANALLQLIS 638 (643)
Q Consensus 599 ~~~~~~~~~~~g--~i~~L~~ll~~g~~~~k-~~A~~lL~~L~ 638 (643)
.. ....+...| ....++.-..+.+..++ +.|..+|..+.
T Consensus 335 te-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIa 376 (524)
T KOG4413|consen 335 TE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA 376 (524)
T ss_pred cc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence 53 333444433 34444444444444443 44455555543
No 125
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00018 Score=71.28 Aligned_cols=50 Identities=22% Similarity=0.361 Sum_probs=43.7
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
..+| |.|-||.+.+.+||++.|||+||..|-.+.++.+. .|+.|++....
T Consensus 238 ~~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~g 287 (313)
T KOG1813|consen 238 ELLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTHG 287 (313)
T ss_pred ccCC--ccccccccccccchhhcCCceeehhhhccccccCC-cceeccccccc
Confidence 3455 88999999999999999999999999999998764 69999887654
No 126
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.16 E-value=0.00042 Score=56.36 Aligned_cols=46 Identities=24% Similarity=0.480 Sum_probs=35.2
Q ss_pred cccccCcccccC-ceec-CCCCccchHHHHHHHhc--CCCCCCCcCcccc
Q 040749 275 FLCPITLEIMRD-PVII-ASGQTFERESVQKWFDS--NHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~d-Pv~~-~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~ 320 (643)
-.||.|...-.| |++. .|||.|...||.+|++. +..+||+||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 446666655544 6554 79999999999999995 4568999998764
No 127
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00023 Score=80.10 Aligned_cols=48 Identities=31% Similarity=0.693 Sum_probs=42.0
Q ss_pred CCccccccCcccccC-----ceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 272 PHEFLCPITLEIMRD-----PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-----Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
..+-.|+||.|.|.. |-.++|||.|+..|+.+|++.. .+||.|+..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhhh
Confidence 446789999999998 7889999999999999999984 58999988443
No 128
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0005 Score=67.41 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=41.8
Q ss_pred CCCccccccCcccccCceec-CCCCccchHHHHHHHh-cCCCCCCCcCcccc
Q 040749 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFD-SNHRTCPKTRQTLA 320 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~-~~~~~cP~~~~~l~ 320 (643)
-...-.||+|++.-.-|.+. +|||.||..||..-+. ...++||.|+.+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567899999999999877 5999999999998776 34579999988655
No 129
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00043 Score=70.32 Aligned_cols=48 Identities=21% Similarity=0.573 Sum_probs=40.7
Q ss_pred CCccccccCcccccC-------------ceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 272 PHEFLCPITLEIMRD-------------PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-------------Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
.++-.|-||++-|-. |--+||||.+.-.|+..|+++. .|||.|+.++.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence 467889999998653 3678999999999999999975 48999999854
No 130
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.05 E-value=0.0011 Score=46.44 Aligned_cols=39 Identities=36% Similarity=0.575 Sum_probs=36.4
Q ss_pred chhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhc
Q 040749 394 PENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432 (643)
Q Consensus 394 ~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs 432 (643)
++++..+.+.|++|.|+.+|.+++.+++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 458889999999999999999999999999999999987
No 131
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.02 E-value=0.05 Score=55.14 Aligned_cols=222 Identities=18% Similarity=0.172 Sum_probs=156.1
Q ss_pred ChHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHHHhcC--CCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHH
Q 040749 417 DSKILEHAVTAVLNLSIDESNKRLIA-QQGAIPAIIEILQS--GSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLV 492 (643)
Q Consensus 417 d~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv 492 (643)
++-++..|+.+|.++....+.|..+. +...-..++..+++ |..+++.+..-++|-|+.++.....|-. ...|.-|+
T Consensus 162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli 241 (432)
T COG5231 162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI 241 (432)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 55577889999999999888877665 55566788888876 4578999999999999988777654444 46778888
Q ss_pred HHhccC-ChhhHHHHHHHHHHhccCC--cchHHHHHcCChHHHHHHhcc---CChhhHHHHH---HHH----HHHhC---
Q 040749 493 DLLQNG-TIRGKKDAVTALFNLSLNQ--ANKARAIDAGIVLPLMNLLEE---RNLGMVDEAL---SIL----LLLAT--- 556 (643)
Q Consensus 493 ~lL~~~-~~~~~~~A~~aL~nLs~~~--~n~~~lv~~G~v~~Lv~lL~~---~~~~~~~~Al---~~L----~~La~--- 556 (643)
.+.+.. ...+.+.++..+.|++... .-...+.-.|-+.+.++.|.. .+++++...- ..| ..||.
T Consensus 242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 888764 4567788889999998732 234445666666666777654 4444432211 111 11111
Q ss_pred ------------Ch---------hhHHHhhcC--CcHHHHHHHHhcCChH-HHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Q 040749 557 ------------HP---------EGRHKIGQL--SFIETLVEYIREGTPK-NKECATAVLLELGANNSSFILAALQYGVY 612 (643)
Q Consensus 557 ------------~~---------~~~~~i~~~--g~i~~Lv~lL~~~s~~-~~e~A~~~L~~L~~~~~~~~~~~~~~g~i 612 (643)
+| .+...+.+. ..+..|.++++...+. .-.-|+.=+.++.+..|+....+...|+-
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 11 122223332 3578888888877665 34456667778888888888888889999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 613 EHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 613 ~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
..++.++.+.++++|-.|...++.+-
T Consensus 402 ~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 402 EIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999888664
No 132
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=0.022 Score=65.58 Aligned_cols=227 Identities=14% Similarity=0.083 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHH-hcCCcchHHHHHhcCChHHHHHHhcC-
Q 040749 379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN-LSIDESNKRLIAQQGAIPAIIEILQS- 456 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~n-Ls~~~~~k~~i~~~g~i~~Lv~lL~~- 456 (643)
+.+|+.-|..+..-.+=.-..-..-|..|.++++|.++-.+++.--+-+=.. |+.++..+..+++.++-.-++.+|..
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~ 566 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS 566 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence 3345555554443333334444556999999999999877776554444333 56677777778877777777888876
Q ss_pred C--CHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHH
Q 040749 457 G--STEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSL-NQANKARAIDAGIVLP 531 (643)
Q Consensus 457 ~--~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~ 531 (643)
+ ++|-|.-||-+|..+..+ .-.++.-.+.+.|...+..|.++ .+-.+...+.+|..|-. ++++|..=++.++...
T Consensus 567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek 646 (1387)
T KOG1517|consen 567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK 646 (1387)
T ss_pred CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence 3 357888888888888654 23445555678888888888886 57778889999998865 6777777788999999
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhCC-----hhhHHHh-----------hcCCcH----HHHHHHHhcCChHHHHHHHHH
Q 040749 532 LMNLLEERNLGMVDEALSILLLLATH-----PEGRHKI-----------GQLSFI----ETLVEYIREGTPKNKECATAV 591 (643)
Q Consensus 532 Lv~lL~~~~~~~~~~Al~~L~~La~~-----~~~~~~i-----------~~~g~i----~~Lv~lL~~~s~~~~e~A~~~ 591 (643)
|..+|.++-++++.+|+.+|..+-++ ++....+ .-+..+ ..++.++..+++-++...+-+
T Consensus 647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ 726 (1387)
T KOG1517|consen 647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA 726 (1387)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999998763 2332222 012222 367778888999998888888
Q ss_pred HHHHhcCCHHHHHH
Q 040749 592 LLELGANNSSFILA 605 (643)
Q Consensus 592 L~~L~~~~~~~~~~ 605 (643)
|..+..+...+...
T Consensus 727 ls~~~~g~~~~~~~ 740 (1387)
T KOG1517|consen 727 LSHFVVGYVSHLKV 740 (1387)
T ss_pred HHHHHHhhHHHhHH
Confidence 88888766544433
No 133
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.00 E-value=0.024 Score=61.36 Aligned_cols=251 Identities=19% Similarity=0.107 Sum_probs=131.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH---
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK--- 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k--- 438 (643)
...|+|-.+|++.-.-++.++++.+..++..+.. ..+. ...|..|-.+|+++....|-.|+++|..|+...+.+
T Consensus 264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v 340 (898)
T COG5240 264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV 340 (898)
T ss_pred HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence 3455566666766677888999999988855411 1111 125667778899999999999999999987632211
Q ss_pred -----HHHH-h-cC--ChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhc-------------cCChHHHHHH
Q 040749 439 -----RLIA-Q-QG--AIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGL-------------SDGIPPLVDL 494 (643)
Q Consensus 439 -----~~i~-~-~g--~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~-------------~g~i~~Lv~l 494 (643)
+.++ + .. ..-++..+|+.|+.+....-...+-+.-.+ |..|..+.+ .-.+..|.+.
T Consensus 341 cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~ 420 (898)
T COG5240 341 CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSS 420 (898)
T ss_pred cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence 1222 1 11 222445556665544433333322222111 111111110 0011112211
Q ss_pred h-ccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC---ChhhHHHhh-----
Q 040749 495 L-QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT---HPEGRHKIG----- 565 (643)
Q Consensus 495 L-~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~---~~~~~~~i~----- 565 (643)
| +.|-.+.++.+..||..+.. ..|+.++.|+..|+..-. .++....|.
T Consensus 421 L~~eGg~eFK~~~Vdaisd~~~-----------------------~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 421 LLQEGGLEFKKYMVDAISDAME-----------------------NDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred HHhcccchHHHHHHHHHHHHHh-----------------------hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 1 12222333333333332222 234445555554444422 222111111
Q ss_pred ------c-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 566 ------Q-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 566 ------~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
. ...+..+..-+--.+.-+|..|+.+|...+-+-... .....+...|.+.+.+.++.+|..|..+|++++
T Consensus 478 EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred cCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 0 123444444443356678889999998776543211 112345677888999999999999999999998
Q ss_pred hhc
Q 040749 639 KSE 641 (643)
Q Consensus 639 ~~~ 641 (643)
..+
T Consensus 555 ~~d 557 (898)
T COG5240 555 LSD 557 (898)
T ss_pred hhh
Confidence 654
No 134
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.95 E-value=0.042 Score=61.18 Aligned_cols=219 Identities=17% Similarity=0.236 Sum_probs=155.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNK 438 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k 438 (643)
.++....++.+|++.-+-++.+|+..+..+.-..|+.- .-.+|.|+.-|..+|+.++..|+.+++.|+. ++.|-
T Consensus 142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 45677889999999999999999999988876555532 2357999999999999999999999999997 56665
Q ss_pred HHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-hhHHHHHHHHH--Hhc
Q 040749 439 RLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTALF--NLS 514 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~--nLs 514 (643)
-.+ -|.+.++|... +-.+.........+|+-.+. .+| ...+++|.+++.+... ...+.+..++- |++
T Consensus 217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s 287 (877)
T KOG1059|consen 217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMS 287 (877)
T ss_pred ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence 433 35666766533 33344455666667764321 111 2468999999987542 44444444443 455
Q ss_pred cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 040749 515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL 593 (643)
Q Consensus 515 ~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 593 (643)
....+....+.. +++.|-.++.+.++.+.-.++-++..++. |+...++ --..+++.|.+.++.+|-.|+..|.
T Consensus 288 ~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 288 SGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred cCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence 444444444433 57778888888999999989988888876 5543332 2346788899999999999999999
Q ss_pred HHhcC
Q 040749 594 ELGAN 598 (643)
Q Consensus 594 ~L~~~ 598 (643)
.+...
T Consensus 362 gmVsk 366 (877)
T KOG1059|consen 362 GMVSK 366 (877)
T ss_pred HHhhh
Confidence 88754
No 135
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.93 E-value=0.018 Score=53.18 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=98.0
Q ss_pred HHHHHcCChHHHHHHhccCC------hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHH
Q 040749 521 ARAIDAGIVLPLMNLLEERN------LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVL 592 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~------~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L 592 (643)
..++..|++..|++++.++. .++...++.++..|-.+.-.-=...+..+|..++.++... ++.+...|+++|
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL 84 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL 84 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence 56888999999999998754 4667788888888887654222355667899999999854 478899999999
Q ss_pred HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
-++..+++.....+.++=-++.|+..++..+++++.+|..++..|-
T Consensus 85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999888888888888999999999999999999999998763
No 136
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.027 Score=61.97 Aligned_cols=224 Identities=16% Similarity=0.186 Sum_probs=140.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
..++.++....+....+|..|..+.+.+...-+..-. .-.+|.++.-+.........+++..|+.++...+.+-..
T Consensus 216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~ 291 (569)
T KOG1242|consen 216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL 291 (569)
T ss_pred hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence 3455666666666777777666666655422111100 012334433333335677889999999998877776666
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
.-...+|.+.++|-+..++++..+..+|..++..-+|... .-.+|.|++-+.+.+...-+ +...|..=.. .
T Consensus 292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF-----V 362 (569)
T KOG1242|consen 292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTF-----V 362 (569)
T ss_pred HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceee-----e
Confidence 6788999999999999999999999999999877666552 24567777777665422222 2222221111 1
Q ss_pred HHHHcCChHHHHHHh----ccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 522 RAIDAGIVLPLMNLL----EERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL----~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
.-|++-.+..++.+| .+.+..+...++.++.|+|.--+....+.. ...+|.+-..+.+..|++|.-|..+|..+
T Consensus 363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL 442 (569)
T ss_pred eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence 112333344444444 446777888999999999984433343332 23455555555566799999999999776
Q ss_pred hcC
Q 040749 596 GAN 598 (643)
Q Consensus 596 ~~~ 598 (643)
-..
T Consensus 443 ~e~ 445 (569)
T KOG1242|consen 443 LER 445 (569)
T ss_pred HHH
Confidence 543
No 137
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.84 E-value=0.017 Score=53.15 Aligned_cols=90 Identities=18% Similarity=0.246 Sum_probs=73.9
Q ss_pred hhhhhhhHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhHHHHHHHHHHHH
Q 040749 50 RTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCE 129 (643)
Q Consensus 50 ~~~~~~~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c~~~sk~~l~~~~~~~~~~~~~~~~ 129 (643)
...|..+..|..-++.|.|+++|+...+..++.+-..-++.|...|++++.|++.|++.+ -|=++.......+++++-.
T Consensus 30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~ 108 (147)
T PF05659_consen 30 LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEE 108 (147)
T ss_pred HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHH
Confidence 344666678889999999999999987665666668889999999999999999999876 4455577778999999999
Q ss_pred HHHHHhcc-CCC
Q 040749 130 KLSAALDG-LDF 140 (643)
Q Consensus 130 ~l~~~L~~-~p~ 140 (643)
+|.+.++. +|+
T Consensus 109 ~l~~f~~v~~q~ 120 (147)
T PF05659_consen 109 SLRRFIQVDLQL 120 (147)
T ss_pred HHHHHhcchhHH
Confidence 99988874 554
No 138
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.83 E-value=0.21 Score=49.07 Aligned_cols=178 Identities=13% Similarity=0.143 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHhccccccc--hhhhhccCChHHH
Q 040749 419 KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG-----STEARENSAAALFSLSMLDEN--KITIGLSDGIPPL 491 (643)
Q Consensus 419 ~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~L 491 (643)
.-..+|+..|--++.+++.|..+..+..---+-.+|..+ ....|-.+..++..|...++- ...+...++||.+
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 345678888888899999999999876544455555432 367888999999999866543 3345568999999
Q ss_pred HHHhccCChhhHHHHHHHHHHhccCCcchHHHHH--------cCChHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHH
Q 040749 492 VDLLQNGTIRGKKDAVTALFNLSLNQANKARAID--------AGIVLPLMNLL-EERNLGMVDEALSILLLLATHPEGRH 562 (643)
Q Consensus 492 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~ 562 (643)
++.+..|+...|..|...+..+-.++.+-..+.. .-++..++..+ +.++..+..+++.+..+|+.++..|.
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~ 253 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA 253 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999999999999999999988777766443321 22333333333 34888999999999999999998888
Q ss_pred Hhhc--C-CcHH-HHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 563 KIGQ--L-SFIE-TLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 563 ~i~~--~-g~i~-~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
++.. . +.-. ....+++ .++..+..-...+.++|.
T Consensus 254 aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~ 291 (293)
T KOG3036|consen 254 ALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT 291 (293)
T ss_pred HHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence 7754 1 1111 1222333 455666666666666654
No 139
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.0012 Score=66.44 Aligned_cols=53 Identities=25% Similarity=0.481 Sum_probs=45.1
Q ss_pred CCCCCCccccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 268 SLVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 268 ~~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
....|+.-.||+|..--.+|.++. +|..||..||-.+.. .+.+||+|+.+..-
T Consensus 294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV 347 (357)
T ss_pred ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence 345678889999999999998775 799999999999998 46789999887653
No 140
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.74 E-value=0.029 Score=61.26 Aligned_cols=221 Identities=17% Similarity=0.196 Sum_probs=128.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC------------------------chhHH-------HHH---------
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN------------------------PENRI-------LIA--------- 401 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~------------------------~~~r~-------~i~--------- 401 (643)
..+...+..|++..++++.+|+.....+++-- ++.-- +|.
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 45777888899988888888887766665310 11000 011
Q ss_pred --hcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc----hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc
Q 040749 402 --DCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES----NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML 475 (643)
Q Consensus 402 --~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~----~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 475 (643)
-.|.+|.|..+|++....++.+.+..++.++.... .|+.+.- --.|++.|++.+.++|.+|..++..+|.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~nKeiRR~A~~tfG~Is~- 759 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSWNKEIRRNATETFGCISR- 759 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHhhHHHHHhhhhhhhhHHh-
Confidence 13788889999999999999999999998887432 2555532 2346788889999999999999988864
Q ss_pred ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 040749 476 DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA 555 (643)
Q Consensus 476 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La 555 (643)
.||-..++..|++-|+..+...+.....++.-.+.+-. --.++|.|+.=-..++..++.-.+.+++.+-
T Consensus 760 -----aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmF 828 (975)
T COG5181 760 -----AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------PFSVLPTLMSDYETPEANVQNGVLKAMCFMF 828 (975)
T ss_pred -----hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC------chhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence 34444555555555544332222222222221111000 0113344443333355555655555555543
Q ss_pred CC--hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 556 TH--PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 556 ~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
.. ...+.-+ ....|.|-+.|.+.++.-|.-|..++.+|.-+.
T Consensus 829 eyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 829 EYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred HHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence 31 1112111 123455555666667777777888877776553
No 141
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.69 E-value=0.0007 Score=71.68 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=44.9
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhc----CCCCCCCcCcccccCC
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS----NHRTCPKTRQTLAHLS 323 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~ 323 (643)
..+-.|.+|.+.-.||+...|.|+|||-||.++... .+-+||.|..+|+...
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl 589 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL 589 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence 345789999999999999999999999999888873 4578999999888653
No 142
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.012 Score=63.13 Aligned_cols=197 Identities=11% Similarity=0.076 Sum_probs=145.0
Q ss_pred HHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCCh
Q 040749 423 HAVTAVLNLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTI 500 (643)
Q Consensus 423 ~a~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~ 500 (643)
.++..|..++.+-. -|.-+....+..+|+++|.+++..+.-.+...++|+-.. ...+..+.+.|.|..|+.++.+.+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd 487 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD 487 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence 44455556654332 356666788999999999987766666677777777543 3456667789999999999998888
Q ss_pred hhHHHHHHHHHHhccCCcc--hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC----ChhhHHHhhcCC----cH
Q 040749 501 RGKKDAVTALFNLSLNQAN--KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT----HPEGRHKIGQLS----FI 570 (643)
Q Consensus 501 ~~~~~A~~aL~nLs~~~~n--~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g----~i 570 (643)
..+....|.|+++..+..+ +-+++..-++..++++..++...++..++.+|.|+.- +++.+..+.+.- ..
T Consensus 488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf 567 (743)
T COG5369 488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF 567 (743)
T ss_pred hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence 8999999999999876544 4567888889999999999999999999999999944 233344443322 34
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHh
Q 040749 571 ETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL-QYGVYEHLIQLT 619 (643)
Q Consensus 571 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~-~~g~i~~L~~ll 619 (643)
..+++.++..+|-.-+..+.+|.+++..++.....+. +...+..+.+++
T Consensus 568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 5667777788888888889999999887765555544 344555555555
No 143
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0012 Score=65.50 Aligned_cols=47 Identities=21% Similarity=0.517 Sum_probs=38.5
Q ss_pred cccccCccccc--Cce-ecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 275 FLCPITLEIMR--DPV-IIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 275 f~CpIc~~~m~--dPv-~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
-.|.||++-+. |-+ ++||.|.|.+.|+.+|+..-...||+|+.++++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 46999999875 444 569999999999999998544579999987764
No 144
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.63 E-value=0.0042 Score=43.35 Aligned_cols=39 Identities=33% Similarity=0.555 Sum_probs=35.7
Q ss_pred cchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749 435 ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473 (643)
Q Consensus 435 ~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 473 (643)
++++..+.+.|+++.|+.+|.+++.+++..++++|.||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 447788889999999999999989999999999999986
No 145
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.081 Score=59.38 Aligned_cols=266 Identities=15% Similarity=0.149 Sum_probs=168.5
Q ss_pred HHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccCchhHHHHHhc-CCcHHHHHhCCC--CChHHHHHHHHHHHHhcC----
Q 040749 362 EEIVSLVEQLSSSKLE-VQKEAVRKIRLLSKENPENRILIADC-GAIPPLVQLLPY--PDSKILEHAVTAVLNLSI---- 433 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~-~~~~A~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~---- 433 (643)
+.+..|+.......+. .+..++.+|+.++.+ -+-....... .++-.++.-... ++..+|-.|+.+|.|--.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~ 207 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA 207 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence 3444455554444443 778899999999843 3333333333 356666765544 367889999999987432
Q ss_pred ---CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHH
Q 040749 434 ---DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTA 509 (643)
Q Consensus 434 ---~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a 509 (643)
++..|.. .+...++.-++++.+++..|..+|..+... .+.-........+..-+.-+++.++++...+...
T Consensus 208 nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 208 NFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred hhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1222322 234445566778889999999998887533 2232333334445555666788888888888776
Q ss_pred HHHhccCCcc----hHHHHH---------------cCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHH
Q 040749 510 LFNLSLNQAN----KARAID---------------AGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHK 563 (643)
Q Consensus 510 L~nLs~~~~n----~~~lv~---------------~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~ 563 (643)
=.++|...-. -..+++ .+++|.|+++|.. .+......|-.+|..++..-
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~----- 357 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV----- 357 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-----
Confidence 6666632111 011222 4677889999865 22344555555565554421
Q ss_pred hhcCCcHHHHHH----HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 564 IGQLSFIETLVE----YIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 564 i~~~g~i~~Lv~----lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
....++..+. -+++.+-+.++.|+.++..+-.+....+-.-+..+++|.++.++.+.+--+++.+.+.|..+.+
T Consensus 358 --~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d 435 (859)
T KOG1241|consen 358 --GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD 435 (859)
T ss_pred --cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence 2234444444 4456677789999999988877655555555667899999999998888899999999988876
Q ss_pred h
Q 040749 640 S 640 (643)
Q Consensus 640 ~ 640 (643)
+
T Consensus 436 ~ 436 (859)
T KOG1241|consen 436 F 436 (859)
T ss_pred h
Confidence 5
No 146
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.024 Score=62.40 Aligned_cols=216 Identities=17% Similarity=0.175 Sum_probs=144.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC------Cc
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI------DE 435 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~------~~ 435 (643)
..+..++....+.+..++..|+..|-.|.....-.+. .....++.++.++..++..|+.++.-++. ..
T Consensus 198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~ 271 (823)
T KOG2259|consen 198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER 271 (823)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 3444478888888899999999998888742211111 23456788888889999888766654432 11
Q ss_pred c-hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc---------------------------------------
Q 040749 436 S-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--------------------------------------- 475 (643)
Q Consensus 436 ~-~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--------------------------------------- 475 (643)
+ +...+ ...++..+.+.+...+..+|..|+.+|..+-..
T Consensus 272 e~~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG 350 (823)
T KOG2259|consen 272 ESEEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG 350 (823)
T ss_pred hhhhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence 1 12222 234667777777776666666666555443110
Q ss_pred ------------ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc-hHHHHHcCChHHHHHHhccCChh
Q 040749 476 ------------DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-KARAIDAGIVLPLMNLLEERNLG 542 (643)
Q Consensus 476 ------------~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~~~~~ 542 (643)
++.-..|..+|+-.++|.-|.+.-.++++.|+..++.|+.+.+. ... ++.-|+.++++....
T Consensus 351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~ 425 (823)
T KOG2259|consen 351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV 425 (823)
T ss_pred ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence 11112344566777777777776678999999999999875443 322 467899999998889
Q ss_pred hHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 543 MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 543 ~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
++..|+.+|..++.+-. ++..-++.+.+-|.+.++.+|+..-.+|.+
T Consensus 426 VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 426 VRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999999999987632 233457778888888888888877766644
No 147
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.59 E-value=0.035 Score=51.32 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=97.1
Q ss_pred hhhccCChHHHHHHhccCCh------hhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHH
Q 040749 481 TIGLSDGIPPLVDLLQNGTI------RGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILL 552 (643)
Q Consensus 481 ~i~~~g~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~ 552 (643)
.+.+.+++..|+.++.+++. .....++.+...|-.+.-.-+..++...|...+.++.. .+..+...|+++|.
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 34567899999999998763 56677888888888776666777777788888888876 36788999999999
Q ss_pred HHhCChhh-HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 553 LLATHPEG-RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 553 ~La~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
++..+... ...+.+.=-++.|+..|+..++..+.+|++.+-.|....+
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~ 134 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD 134 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence 99887666 5555555569999999999999999999999998876544
No 148
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.019 Score=63.27 Aligned_cols=214 Identities=15% Similarity=0.141 Sum_probs=138.3
Q ss_pred HHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc---c---chhhh
Q 040749 409 LVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD---E---NKITI 482 (643)
Q Consensus 409 Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~---~k~~i 482 (643)
|..+....|..++.+|+..|+.|+..-.--.. .....++.++.....+|..|..+++-.+... . +-..=
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k 277 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK 277 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence 66667777899999999999988862222111 2455677888888888888877777654221 0 00000
Q ss_pred hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc--------------------------------------------
Q 040749 483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA-------------------------------------------- 518 (643)
Q Consensus 483 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-------------------------------------------- 518 (643)
....++..+.+.+++.+..++..|+.+|..+....+
T Consensus 278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv 357 (823)
T KOG2259|consen 278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV 357 (823)
T ss_pred hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence 113456666666777666666666655543321111
Q ss_pred -------chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749 519 -------NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV 591 (643)
Q Consensus 519 -------n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~ 591 (643)
.-..++..|+-..++.-|.+.--+++.+|+..++.|+.+..+- . ..++..|++++.+.-..+|..|..+
T Consensus 358 psee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F---A-~~aldfLvDMfNDE~~~VRL~ai~a 433 (823)
T KOG2259|consen 358 PSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF---A-VRALDFLVDMFNDEIEVVRLKAIFA 433 (823)
T ss_pred chhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc---H-HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 0112344555566666665555678899999999998754221 1 2467788899988778899999999
Q ss_pred HHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 592 LLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 592 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
|..++.+ ..+++.-++.+...+.+-++.+|+.+..+|.+.
T Consensus 434 L~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 434 LTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNA 473 (823)
T ss_pred HHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9888765 223445677777888888888888877777654
No 149
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.092 Score=61.77 Aligned_cols=217 Identities=17% Similarity=0.200 Sum_probs=133.8
Q ss_pred CCChHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHhcCCCHHHHHHHHHHHHhccccc--cchhhhhccCChHH
Q 040749 415 YPDSKILEHAVTAVLNLSIDESNKRLIAQ--QGAIPAIIEILQSGSTEARENSAAALFSLSMLD--ENKITIGLSDGIPP 490 (643)
Q Consensus 415 ~~d~~~~~~a~~~L~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~ 490 (643)
+.+..+|..+...|..++..+........ ......+.+.+++....++.....+|..|-... ++...+ ...|+-
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence 34778899999999998877444333221 123334444444444555666666665553221 222222 234455
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcC------ChHHHHHHhccC--ChhhHHHH--HHHHHHHhCChhh
Q 040749 491 LVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAG------IVLPLMNLLEER--NLGMVDEA--LSILLLLATHPEG 560 (643)
Q Consensus 491 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G------~v~~Lv~lL~~~--~~~~~~~A--l~~L~~La~~~~~ 560 (643)
++-.+++.+...+..|..+|.+++. .....+.| .+...+.++..+ .......| +-++..+...
T Consensus 743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e--- 815 (1176)
T KOG1248|consen 743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE--- 815 (1176)
T ss_pred HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---
Confidence 5555577788899999999998873 11222222 444555555432 22222222 2222322221
Q ss_pred HHHhhcC----CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749 561 RHKIGQL----SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636 (643)
Q Consensus 561 ~~~i~~~----g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 636 (643)
...+.+. +.+..+...|.++++.+...|+..+..++..-|+.+..-....+++.+..+++.++...+.++.-+|..
T Consensus 816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek 895 (1176)
T KOG1248|consen 816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK 895 (1176)
T ss_pred HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1122232 445556666778899999999999999999888777666666789999999999999999999999998
Q ss_pred HHhh
Q 040749 637 ISKS 640 (643)
Q Consensus 637 L~~~ 640 (643)
|.+.
T Consensus 896 Lirk 899 (1176)
T KOG1248|consen 896 LIRK 899 (1176)
T ss_pred HHHH
Confidence 8654
No 150
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.36 E-value=0.14 Score=57.38 Aligned_cols=232 Identities=15% Similarity=0.157 Sum_probs=135.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--hhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP--ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~--~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
.+...+..|++.++.++.+|+..+..+++--. .--..+...|. .|...|..+++++.-..+.+|..+...- +-..
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvi-gm~k 876 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVI-GMTK 876 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhc-cccc
Confidence 45667778899999999999999998883110 01112333333 3556788888887665555554443210 0011
Q ss_pred HH--hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749 441 IA--QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 441 i~--~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 517 (643)
+. ..+.+|.|.-+|++....+++++...+..++..........+ -..-=.|+++|++.+.+.+..|..++..++..-
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI 956 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI 956 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence 11 357899999999999999999999999999855332222222 123345777888877778877776666554311
Q ss_pred c------------------ch------HHHH-H-cC---ChHHHHHHhccCChhhHHHHHHHHHHHhC--ChhhHHHhhc
Q 040749 518 A------------------NK------ARAI-D-AG---IVLPLMNLLEERNLGMVDEALSILLLLAT--HPEGRHKIGQ 566 (643)
Q Consensus 518 ~------------------n~------~~lv-~-~G---~v~~Lv~lL~~~~~~~~~~Al~~L~~La~--~~~~~~~i~~ 566 (643)
. || ..+| + .| ++|.|+.=-..++..++.-.+.+|..+-. .+.++.-|.
T Consensus 957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy- 1035 (1172)
T KOG0213|consen 957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY- 1035 (1172)
T ss_pred CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH-
Confidence 1 10 0111 1 22 22333322222555555555555555533 122222222
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 567 LSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
...|.|-+.|.+.++.-|.-|+.++.+|+-+.
T Consensus 1036 -av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1036 -AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred -HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence 24566666666677778888888888887654
No 151
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.28 E-value=0.092 Score=60.81 Aligned_cols=228 Identities=16% Similarity=0.143 Sum_probs=154.0
Q ss_pred CcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch---HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHh-ccccccch
Q 040749 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN---KRLIAQQGAIPAIIEILQSGSTEARENSAAALFS-LSMLDENK 479 (643)
Q Consensus 405 ~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~---k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~~~k 479 (643)
-+|.+++.|-+ |.+-+++|.-|+.. |-+ ...-..-|++|-++++|++...|+|..-+-+=.. |+.++.++
T Consensus 473 QLPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 473 QLPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred hcchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH
Confidence 35556665433 33444445444431 212 1222367999999999999999988765554444 55666777
Q ss_pred hhhhccCChHHHHHHhccC---ChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHH
Q 040749 480 ITIGLSDGIPPLVDLLQNG---TIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLL 554 (643)
Q Consensus 480 ~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~L 554 (643)
..+++.++-.-.+..|..+ +++-+.-|+-.|..++.+ +-.+....+.+.+...+.+|.++ .+-++.-++-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 7788766655566666552 346677788888888764 44566678899999999999884 566677788888888
Q ss_pred hC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----HHHHHHH------------HHCCcH---HH
Q 040749 555 AT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN----SSFILAA------------LQYGVY---EH 614 (643)
Q Consensus 555 a~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~----~~~~~~~------------~~~g~i---~~ 614 (643)
=. ..+.|=.=.+.++...|..+|.+..|++|..|+-+|..+..+. ++....+ .+.-+. ..
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 55 4555544456788999999999999999999999999987753 2211111 122222 36
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHH
Q 040749 615 LIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 615 L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
++.++..|++-++...+-.|..+
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~ 730 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHF 730 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHH
Confidence 77788899998887666666554
No 152
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.32 Score=55.15 Aligned_cols=217 Identities=15% Similarity=0.120 Sum_probs=113.5
Q ss_pred HHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCC
Q 040749 409 LVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDG 487 (643)
Q Consensus 409 Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~ 487 (643)
|.+=|++.+.-++-.|+.+|++++..+-. ....|.+.++|++.++.+|..|+-+...+-.- ++.- .-+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~Ema------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~-----e~f 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPEMA------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV-----EHF 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHHHh------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH-----HHh
Confidence 33445666777888888899888843222 33567777888888888888888877765321 1111 123
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHH---------------------------------H
Q 040749 488 IPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPL---------------------------------M 533 (643)
Q Consensus 488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~L---------------------------------v 533 (643)
++....+|.+.+..+...++..+..+|.. +++-..+-+ .++.| +
T Consensus 181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL 258 (866)
T KOG1062|consen 181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL 258 (866)
T ss_pred hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence 44444455444444444444444444432 222111111 22222 3
Q ss_pred HHhccCChhhHHHHHHHHHHHhCChhhHHHhhcC---CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH----
Q 040749 534 NLLEERNLGMVDEALSILLLLATHPEGRHKIGQL---SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAA---- 606 (643)
Q Consensus 534 ~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~---g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~---- 606 (643)
.+|..++.+..+....+|+.++.+-+.-.-+..+ .+|..++.+. .++..+..|+.+|..+..+...+...+
T Consensus 259 riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~ 336 (866)
T KOG1062|consen 259 RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNM 336 (866)
T ss_pred HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence 3334445555555556666665532221111111 1222222222 345567777777776655443322221
Q ss_pred ----H--HCCcH----HHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 607 ----L--QYGVY----EHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 607 ----~--~~g~i----~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+ +..++ ..+++.+++.++-+|++|..++..|-+.
T Consensus 337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~ 380 (866)
T KOG1062|consen 337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE 380 (866)
T ss_pred HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence 1 11122 2566777778888888888888776543
No 153
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=96.23 E-value=0.03 Score=53.95 Aligned_cols=121 Identities=14% Similarity=0.087 Sum_probs=89.5
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHH----------------cCChHHHHHHhcc------CChhhHHHHHHHHHHHhCC
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAID----------------AGIVLPLMNLLEE------RNLGMVDEALSILLLLATH 557 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~----------------~G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~ 557 (643)
......++..|.||+..++.+..+++ ..++..|+..+.. ....-.+....+|.|+++.
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 33455677888888888777776554 2356777777755 3345578899999999999
Q ss_pred hhhHHHhhcC--Cc--HHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH--CCcHHHHHHHhh
Q 040749 558 PEGRHKIGQL--SF--IETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQ--YGVYEHLIQLTE 620 (643)
Q Consensus 558 ~~~~~~i~~~--g~--i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~ 620 (643)
+++|..+.+. +. +..|+.++.+.|..-|.-+++++.|+|-....+-..+-. .++++.|+.-+.
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999999874 34 677777777778888899999999999876655433332 467887776665
No 154
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.08 E-value=0.0046 Score=62.82 Aligned_cols=54 Identities=20% Similarity=0.482 Sum_probs=43.6
Q ss_pred CCCccccccCcccccC--c-e-ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749 271 IPHEFLCPITLEIMRD--P-V-IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~d--P-v-~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 326 (643)
-...|.|||++..|.. + | +.+|||+|+..+|.+.- ....||.|+.++...++++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 4567999999999963 3 3 34999999999999873 3457999999999888765
No 155
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.04 E-value=0.13 Score=59.07 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCcchhchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcH
Q 040749 328 YALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP 407 (643)
Q Consensus 328 ~~l~~~i~~~~~~~~~~~p~~~~~~~~~~s~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~ 407 (643)
.++|.+|.+....+.+. ...+..++.+.+.|.+.++-.-.-|...++.+|+- ++. ++.
T Consensus 38 dAmK~iIa~M~~G~dms-----------------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avN 95 (757)
T COG5096 38 DAMKKIIAQMSLGEDMS-----------------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVN 95 (757)
T ss_pred HHHHHHHHHHhcCCChH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHH
Confidence 46777777755433322 45667777777778887776666777777766622 222 466
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCC
Q 040749 408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDG 487 (643)
Q Consensus 408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~ 487 (643)
.+.+=+.++++.+|..|++++..+=. ..+ -..+++++.+.+.++++.+|.+|+-+++++-.. .+....+.|.
T Consensus 96 ti~kDl~d~N~~iR~~AlR~ls~l~~-----~el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~ 167 (757)
T COG5096 96 TIQKDLQDPNEEIRGFALRTLSLLRV-----KEL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGL 167 (757)
T ss_pred HHHhhccCCCHHHHHHHHHHHHhcCh-----HHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccH
Confidence 77778888999999999998876542 112 234688999999999999999999999998532 2334456788
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 488 IPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
+..+..++.+.++.+..+|+.+|+.+...
T Consensus 168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 168 IDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 89999999999999999999999887643
No 156
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.76 Score=53.58 Aligned_cols=136 Identities=16% Similarity=0.190 Sum_probs=107.0
Q ss_pred HHHHHHHHHHhhccCchhHHHHHh----cCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH
Q 040749 379 QKEAVRKIRLLSKENPENRILIAD----CGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEI 453 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l 453 (643)
..-++.+|+++.+.+|+.-..+.. -|..+.+..+|. ++++.++.-|+.++.-+..+.+.-..|++.|.+..|+.+
T Consensus 1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence 346788999999888866554432 367777777776 458899999999999888888888899999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhcc
Q 040749 454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSL 515 (643)
Q Consensus 454 L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~ 515 (643)
|.+ -+..|+.+..+|..|+++.+..+...+.|++.-+.+++... ++..+..|+..+..|..
T Consensus 1822 LHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred Hhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 965 46788999999999999988877777888888888877543 45666666666666653
No 157
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.02 E-value=0.14 Score=57.31 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=102.8
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH---HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 040749 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR---AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHK 563 (643)
Q Consensus 487 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~---lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~ 563 (643)
.+...+..|++.++.++..|+..+..|+..-.++.. |...|+ .|.+.|....+++.-..++++..+...-.....
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km 877 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM 877 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence 345556678889999999999999888754344322 333443 367777778888877777777776552211111
Q ss_pred h-hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 564 I-GQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 564 i-~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
. --.+.+|.|..+|++....++++++..+..+|.++++++..-.=-.+-=-|++++.+.+..+++.|...+-.+.+
T Consensus 878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 1 114789999999999999999999999999999888643221001122246677777788888888877666554
No 158
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.47 Score=53.58 Aligned_cols=266 Identities=13% Similarity=0.135 Sum_probs=167.8
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHhhc------cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749 362 EEIVSLVEQLSS--SKLEVQKEAVRKIRLLSK------ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 362 ~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~------~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~ 433 (643)
..+-.+++.... ++..+|..|+.+|.+-.. +++..|.. .+...+..-.++|.+++..|..+|..+..
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence 344455554442 456777788887775431 22233333 34456677788899999999999988764
Q ss_pred -CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-c-----------chh----hhh---ccCChHHHHH
Q 040749 434 -DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-E-----------NKI----TIG---LSDGIPPLVD 493 (643)
Q Consensus 434 -~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~-----------~k~----~i~---~~g~i~~Lv~ 493 (643)
+=+.-...+....+..-+..+++.++++...+...-++++..+ + +.. .+. -.+.+|.|++
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~ 326 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE 326 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence 2222222334445556667778888888888887666665321 0 000 111 1367888888
Q ss_pred Hhcc-------CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhc----cCChhhHHHHHHHHHHHhCChhh-H
Q 040749 494 LLQN-------GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE----ERNLGMVDEALSILLLLATHPEG-R 561 (643)
Q Consensus 494 lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~----~~~~~~~~~Al~~L~~La~~~~~-~ 561 (643)
+|.. +++...+.|..+|.-++.. +...++++.+.++. .++..-++.|+.++..+-..++. +
T Consensus 327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~ 399 (859)
T KOG1241|consen 327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK 399 (859)
T ss_pred HHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence 8853 1356677787777766532 33445666666654 46667788888888777654432 2
Q ss_pred HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH-HHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAA-LQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
..-.-.++++.++.++.+.+--++..+.|.|..+|...++.+.-. ...+.++.|+.-+ +..|++-.++.|.+-.|.+.
T Consensus 400 Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 400 LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEA 478 (859)
T ss_pred hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHH
Confidence 222335789999999998888889999999999998877433221 1233344444333 34788888999988888753
No 159
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.95 E-value=0.029 Score=47.88 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040749 543 MVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIR--EGTPKNKECATAVLLELGANNSSFILAALQ 608 (643)
Q Consensus 543 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~--~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~ 608 (643)
.+...+.+|+||+. ++..+..+.+.|+++.++..-. ..+|-.+|.|+.++.+||.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 35667899999987 6788899999999999988654 567999999999999999999988777654
No 160
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.93 E-value=0.0033 Score=65.90 Aligned_cols=47 Identities=30% Similarity=0.619 Sum_probs=38.2
Q ss_pred CCCccccccCcccccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 271 IPHEFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+-+--+||+|++.|.+-| .+.|.|+|...|+++|+.. +||+||.-.+
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence 334458999999998765 4579999999999999864 7999987655
No 161
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.92 E-value=0.0094 Score=44.84 Aligned_cols=55 Identities=29% Similarity=0.195 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749 459 TEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513 (643)
Q Consensus 459 ~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 513 (643)
+.+|..|+++|.+++........-....+++.|+.+|++++..++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4689999999999876554444444578899999999999999999999999875
No 162
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.88 E-value=0.015 Score=43.68 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 040749 418 SKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL 472 (643)
Q Consensus 418 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~L 472 (643)
+.+|..|+++|++++........-....+++.|+.+|++++..+|.+|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4688999999999887655544444577899999999999999999999999875
No 163
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.11 Score=58.65 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~ 436 (643)
......+...+++.++.+|..|+-.+.++- ..+.......|.++.|-.++...++.+..+|+.+|..+.....
T Consensus 120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 356778889999999999999998888886 3455667789999999999998899999999999999987443
No 164
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.78 E-value=0.24 Score=56.86 Aligned_cols=168 Identities=20% Similarity=0.176 Sum_probs=124.0
Q ss_pred hcCCCHHHHHHHHHH-HHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHH
Q 040749 371 LSSSKLEVQKEAVRK-IRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPA 449 (643)
Q Consensus 371 L~s~~~~~~~~A~~~-L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~ 449 (643)
|.+.+...+..|++. |..+..++ +.- -..|-+++...+.|.+++.-.-.-|.+.+...+....+ +++.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~-dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt 96 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE-DMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT 96 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC-ChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence 666677778888774 44444332 211 13456667666778888887777777777755543333 4677
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCCh
Q 040749 450 IIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIV 529 (643)
Q Consensus 450 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v 529 (643)
+.+=+.+.++++|-.|.+++..|-.. -....+++++.+++.++++.+++.|+.|+.++-.. ++....+.|.+
T Consensus 97 i~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~ 168 (757)
T COG5096 97 IQKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLI 168 (757)
T ss_pred HHhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence 77888899999999999999887321 11134689999999999999999999999988643 33445678899
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749 530 LPLMNLLEERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 557 (643)
..+..++.+.++.+..+|+.+|..+...
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 9999999999999999999999988653
No 165
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.77 E-value=0.035 Score=47.40 Aligned_cols=65 Identities=31% Similarity=0.387 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC--CChHHHHHHHHHHHHhcC-CcchHHHHHh
Q 040749 379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY--PDSKILEHAVTAVLNLSI-DESNKRLIAQ 443 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~-~~~~k~~i~~ 443 (643)
+...++.|.+++..++.++..+.+.|+||.+++.-.- .+|-+++.|+.++.||+. +++|+..|.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4567788999999999999999999999999986654 479999999999999998 5678888764
No 166
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.76 E-value=0.25 Score=48.55 Aligned_cols=139 Identities=15% Similarity=0.110 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCCh--hhHHHhhcCCcHHHHH
Q 040749 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATHP--EGRHKIGQLSFIETLV 574 (643)
Q Consensus 502 ~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~~--~~~~~i~~~g~i~~Lv 574 (643)
-..+|+..|..++++++.+..++++..--.|-.+|.. +.+-++-.++++++.|..+. +.-..+...++||.++
T Consensus 95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL 174 (293)
T KOG3036|consen 95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL 174 (293)
T ss_pred hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence 3457888888899999999999999887777777754 45677888999999998753 3344556789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcCCHH--H-HHHHHH----CCcHHHHH-HHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 575 EYIREGTPKNKECATAVLLELGANNSS--F-ILAALQ----YGVYEHLI-QLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 575 ~lL~~~s~~~~e~A~~~L~~L~~~~~~--~-~~~~~~----~g~i~~L~-~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+.+..||...|..|..|+..+-..+.. + |+..-+ .-++..++ .+...+++|+-+.+.++.-.|++.
T Consensus 175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999887655432 1 221111 12334333 455667888888888887777653
No 167
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=1.4 Score=50.17 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~ 433 (643)
+...+...++|+..++.++++|+-+...+....|+.-.. +++..-++|...+..+...++..+..++.
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~ 208 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCK 208 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHh
Confidence 345666677888899999999998888877666654433 34455556665566565556666655554
No 168
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.33 Score=54.18 Aligned_cols=264 Identities=16% Similarity=0.159 Sum_probs=135.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCC--hHHHHHHHHHHHHhcCCcchH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPD--SKILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d--~~~~~~a~~~L~nLs~~~~~k 438 (643)
+..+..+-..|.|.++-.+.-|+..+.++. +.+++..+.. -|| ++|-+++ .-++..|+-+|+.|-...+
T Consensus 110 klvin~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp-- 180 (938)
T KOG1077|consen 110 KLVINSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP-- 180 (938)
T ss_pred HHHHHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc--
Confidence 345566667788888888999999999886 3445544432 344 5565553 3456666666766654321
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhcc-C------------ChhhH
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQN-G------------TIRGK 503 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~-~------------~~~~~ 503 (643)
..+-..+.+..++.+|...+..+...+...+-.|+.. ++++..+. -++..|..+... + .+=..
T Consensus 181 Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~PWL~ 258 (938)
T KOG1077|consen 181 DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ 258 (938)
T ss_pred cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence 1111224567778888766655444444444444432 12222111 111222222111 1 12233
Q ss_pred HHHHHHHHHhcc--CCcchHHHHHcCChHHHHHHhccC--C-----hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHH
Q 040749 504 KDAVTALFNLSL--NQANKARAIDAGIVLPLMNLLEER--N-----LGMVDEALSILLLLATHPEGRHKIGQLSFIETLV 574 (643)
Q Consensus 504 ~~A~~aL~nLs~--~~~n~~~lv~~G~v~~Lv~lL~~~--~-----~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv 574 (643)
...+++|.+.-. ++..+.++.+ ++..++...+++ . ...+...+--.-+|+.+-+.-..+.. .++..|.
T Consensus 259 vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg 335 (938)
T KOG1077|consen 259 VKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLG 335 (938)
T ss_pred HHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHH
Confidence 445555555432 1222333222 222223222210 0 11222223333344443322222222 3677777
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhc
Q 040749 575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 575 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~L~~~~ 641 (643)
.+|.+..+..|-.|+.-++.||+..+ ...++... ...++..+. ..+..++++|..+|..|++..
T Consensus 336 ~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~ 400 (938)
T KOG1077|consen 336 QFLSHRETNIRYLALESMCKLASSEF--SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS 400 (938)
T ss_pred HHhhcccccchhhhHHHHHHHHhccc--hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence 78877777788888888888887643 22222222 445555555 567778888888888887653
No 169
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=0.0069 Score=62.75 Aligned_cols=60 Identities=27% Similarity=0.578 Sum_probs=49.3
Q ss_pred cccccCcccccCc-----eecCCCCccchHHHHHHHhc-CCCCCCCcCcccccCCCCccHHHHHHH
Q 040749 275 FLCPITLEIMRDP-----VIIASGQTFERESVQKWFDS-NHRTCPKTRQTLAHLSIAPNYALKNLI 334 (643)
Q Consensus 275 f~CpIc~~~m~dP-----v~~~cg~ty~r~~I~~~~~~-~~~~cP~~~~~l~~~~l~pn~~l~~~i 334 (643)
-.||||++-+.-| |++.|||-|-..||++|+.+ -...||.|.-......+.|-+++|...
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa 70 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA 70 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence 5799999988866 56789999999999999962 224699999888888888888887654
No 170
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.64 E-value=0.32 Score=48.64 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=127.4
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHH-------HhCCCCC--h---HHHHHHHHHHHHhcCCcchHHHH
Q 040749 375 KLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLV-------QLLPYPD--S---KILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv-------~lL~~~d--~---~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
+++.+..|+.+|..--...++.--.+-. .|.+..|+ ..++.+. + .-..+|+..|--++.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 4677888888877655333443333333 45555553 2344332 1 23457777777889999999999
Q ss_pred HhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhcccccc--chhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749 442 AQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDE--NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 514 (643)
.++...--|.-.|+..+ ...|-.+..++..|...++ .-..+...+.+|..++.+..|+.-.|..|...+..+-
T Consensus 88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL 167 (262)
T PF04078_consen 88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL 167 (262)
T ss_dssp HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99887666666665432 5678888899999886543 3344556899999999999999999999999999887
Q ss_pred cCCcchHHH-------HH-cCChHHHHHH-hccCChhhHHHHHHHHHHHhCChhhHHHhhc
Q 040749 515 LNQANKARA-------ID-AGIVLPLMNL-LEERNLGMVDEALSILLLLATHPEGRHKIGQ 566 (643)
Q Consensus 515 ~~~~n~~~l-------v~-~G~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~ 566 (643)
.++.+-..+ .. ..++..++.- ..++++.+....+.+-..|+.++..+.++..
T Consensus 168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 666553332 11 2233444433 3458889999999999999999999888764
No 171
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.62 E-value=0.049 Score=52.45 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=89.9
Q ss_pred CChHHHHHHHHHHHHhcCCcchHHHHHh----------------cCChHHHHHHhcCC------CHHHHHHHHHHHHhcc
Q 040749 416 PDSKILEHAVTAVLNLSIDESNKRLIAQ----------------QGAIPAIIEILQSG------STEARENSAAALFSLS 473 (643)
Q Consensus 416 ~d~~~~~~a~~~L~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls 473 (643)
++......++..|.||+..+.....+.. ..++..|++.+..| ...-..+.+.++.|+|
T Consensus 7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS 86 (192)
T PF04063_consen 7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS 86 (192)
T ss_pred CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence 3444556678888999888777665442 23677788877652 2345678899999999
Q ss_pred ccccchhhhhc--cCC--hHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHc---CChHHHHHHhc
Q 040749 474 MLDENKITIGL--SDG--IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDA---GIVLPLMNLLE 537 (643)
Q Consensus 474 ~~~~~k~~i~~--~g~--i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~---G~v~~Lv~lL~ 537 (643)
..++.|..+.. .+. +..|+.++.+.+..-+.-++.+|.|+|...+....+... +++|.|+--|.
T Consensus 87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 99999999886 344 778888888888888889999999999999988887763 44555444443
No 172
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.0091 Score=57.65 Aligned_cols=54 Identities=22% Similarity=0.444 Sum_probs=46.3
Q ss_pred CccccccCcccccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 273 HEFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
..|.||+|.+.+.+.+ .-+|||.+|..|.++.+... ..||+|+.++...++++-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence 5699999999998753 34899999999999998864 589999999999988764
No 173
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.58 E-value=0.28 Score=56.48 Aligned_cols=232 Identities=14% Similarity=0.100 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHH-HHHHHHHHHhcCCcchH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL-EHAVTAVLNLSIDESNK 438 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~-~~a~~~L~nLs~~~~~k 438 (643)
+...+..+++.|...+.++|..|+++++-+++.-++.+-.- .+..|+.-+-++-...+ ..++.....++.-++..
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence 56789999999999999999999999999985444333221 23344443222222222 22233222223222222
Q ss_pred HHHHhcCChHHHHHHhcCC-----C-HHHHHHHHHHHH----hccccccchhhhhccCChHHHHHHhccCChhhHHHHHH
Q 040749 439 RLIAQQGAIPAIIEILQSG-----S-TEARENSAAALF----SLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT 508 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~-----~-~e~~~~Aa~~L~----~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 508 (643)
.....+.+.+.+...|... + .-++-.++..+. +++..=.+ ...+....++.-+.+....+++.|+.
T Consensus 121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~----fh~~il~~l~~ql~s~R~aVrKkai~ 196 (1233)
T KOG1824|consen 121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN----FHLSILKCLLPQLQSPRLAVRKKAIT 196 (1233)
T ss_pred ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc----hHHHHHHHHhhcccChHHHHHHHHHH
Confidence 2233344455555544332 1 223333443333 22211000 12344556666666777789999999
Q ss_pred HHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH---hcCChHH
Q 040749 509 ALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI---REGTPKN 584 (643)
Q Consensus 509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~~ 584 (643)
+|..|+..-.+- +-.+++..|++-|.. ..+.....-..+|..++.....|.--.-...++.+.++. ...+.+.
T Consensus 197 ~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDEL 273 (1233)
T KOG1824|consen 197 ALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDEL 273 (1233)
T ss_pred HHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHH
Confidence 999998654332 222344455555543 333334444556666665433332222245688888888 5567889
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 040749 585 KECATAVLLELGANNSSF 602 (643)
Q Consensus 585 ~e~A~~~L~~L~~~~~~~ 602 (643)
|+.++.+|-.+....|..
T Consensus 274 rE~~lQale~fl~rcp~e 291 (1233)
T KOG1824|consen 274 REYCLQALESFLRRCPKE 291 (1233)
T ss_pred HHHHHHHHHHHHHhChhh
Confidence 999999998887777654
No 174
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=0.18 Score=57.05 Aligned_cols=242 Identities=18% Similarity=0.163 Sum_probs=144.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
...+.++..+...|.+.++-.---+.+.++..|+.. .+++..+++=...+++.++.-|++++..+-.+ .+
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i 118 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KI 118 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HH
Confidence 346667777777776655555455666666655432 34566666666777899998888887665432 11
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc-h
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-K 520 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~ 520 (643)
......+|.+.++++++.+|..|+..+.++- +.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.+ -
T Consensus 119 -~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~ 195 (734)
T KOG1061|consen 119 -TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN 195 (734)
T ss_pred -HHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence 1235788999999999999998888888773 44555566689999999999988999999999999999765543 1
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh--hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP--EGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
...+..-.+..++..+...++- .-+.+|..++.+. +.+++ ...+..+...+.+.++.+.-.++.++.++...
T Consensus 196 ~~~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~ 269 (734)
T KOG1061|consen 196 LLELNPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVKY 269 (734)
T ss_pred cccccHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence 1111112233334444332211 1234444444421 11111 12345555566666666666777776666554
Q ss_pred CHHHHHHHHHCCcHHHHHHHhhcCC
Q 040749 599 NSSFILAALQYGVYEHLIQLTEGGT 623 (643)
Q Consensus 599 ~~~~~~~~~~~g~i~~L~~ll~~g~ 623 (643)
-+. .....-...-++|+.++....
T Consensus 270 ~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 270 LKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred HHH-HHHHHHHHhcccceeeecccc
Confidence 333 222222234445555444443
No 175
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.0036 Score=45.60 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=39.3
Q ss_pred cccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
-.|.||.+---|.|+..|||. .|..|=.+.+...+..||.|+.++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 459999999999999999996 5999988877777889999988764
No 176
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.47 E-value=0.0057 Score=63.40 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=31.4
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHh
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFD 306 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~ 306 (643)
.+++.||||...++||+|++|||..|+.|-...+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46899999999999999999999999999876554
No 177
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.43 E-value=0.038 Score=48.49 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHh
Q 040749 360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNL 431 (643)
Q Consensus 360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nL 431 (643)
+-..+..|++.|. +.++....-|+..|+.+++..|..|..+-+.|+-..+..++.++|++++..|+.++-.+
T Consensus 41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 3467899999994 55777777899999999999999999999999999999999999999999999988654
No 178
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.32 E-value=1.3 Score=51.80 Aligned_cols=238 Identities=16% Similarity=0.206 Sum_probs=142.1
Q ss_pred HHhcCCcHHHHHhCCCC-----ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc----CCC----HHHHHHHH
Q 040749 400 IADCGAIPPLVQLLPYP-----DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ----SGS----TEARENSA 466 (643)
Q Consensus 400 i~~~g~i~~Lv~lL~~~-----d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~e~~~~Aa 466 (643)
+.+.|++..++.++.+- +.......+..|...++-..||..+.+.|+++.|++.|. .+. +++-+...
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL 192 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL 192 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence 45678999999888752 345556667777777788999999999999999999884 333 55556555
Q ss_pred HHHHhccccc---cchhhhh----------ccCChHHHHHHhccC----ChhhHHHHHHHHHHhccCCcchHHH-HHcCC
Q 040749 467 AALFSLSMLD---ENKITIG----------LSDGIPPLVDLLQNG----TIRGKKDAVTALFNLSLNQANKARA-IDAGI 528 (643)
Q Consensus 467 ~~L~~Ls~~~---~~k~~i~----------~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~l-v~~G~ 528 (643)
.++-.|.... ....... ....+..|++.+.+. ++......++.|-+|+...+..-.. ++.
T Consensus 193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-- 270 (802)
T PF13764_consen 193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-- 270 (802)
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence 5555553221 1111111 112356666666543 5677788888899998876665432 221
Q ss_pred hHHHHHH--hccCChhhHHHHHHHHHHHhC----Ch---hhHHHhhcCCcHHHHHHHHhcC--------ChHHHH-----
Q 040749 529 VLPLMNL--LEERNLGMVDEALSILLLLAT----HP---EGRHKIGQLSFIETLVEYIREG--------TPKNKE----- 586 (643)
Q Consensus 529 v~~Lv~l--L~~~~~~~~~~Al~~L~~La~----~~---~~~~~i~~~g~i~~Lv~lL~~~--------s~~~~e----- 586 (643)
+.+.+++ +......--...+..++.++. +. .-|..+++.|++...+++|... +++.++
T Consensus 271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p 350 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP 350 (802)
T ss_pred HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence 1111111 100000000122344444433 33 3478889999999999988642 344444
Q ss_pred ---HHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHhh
Q 040749 587 ---CATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLISKS 640 (643)
Q Consensus 587 ---~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~~~ 640 (643)
.++.+|.-||.+... .+.++..++++.|..|=+.. +.++-..|..+|..|++.
T Consensus 351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~ 407 (802)
T PF13764_consen 351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN 407 (802)
T ss_pred cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence 477778888876543 34445667776666655433 455666777777777654
No 179
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.04 E-value=0.025 Score=41.50 Aligned_cols=41 Identities=20% Similarity=0.592 Sum_probs=32.0
Q ss_pred ccccCcc--cccCceecCCC-----CccchHHHHHHHhc-CCCCCCCcC
Q 040749 276 LCPITLE--IMRDPVIIASG-----QTFERESVQKWFDS-NHRTCPKTR 316 (643)
Q Consensus 276 ~CpIc~~--~m~dPv~~~cg-----~ty~r~~I~~~~~~-~~~~cP~~~ 316 (643)
.|.||++ .-.+|.+.||. +.+.+.|+.+|+.. +..+||.|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3889987 44578888875 56899999999985 356799984
No 180
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=94.92 E-value=0.0085 Score=47.67 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=23.8
Q ss_pred ccccccCccccc-C---ceec----CCCCccchHHHHHHHhc--CC--------CCCCCcCccccc
Q 040749 274 EFLCPITLEIMR-D---PVII----ASGQTFERESVQKWFDS--NH--------RTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~-d---Pv~~----~cg~ty~r~~I~~~~~~--~~--------~~cP~~~~~l~~ 321 (643)
+..|+||..... + |+.+ .|+++|...|+.+||.. +. .+||.|+.+++-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 467999998754 2 4443 58999999999999983 11 249999988763
No 181
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.90 E-value=0.011 Score=60.70 Aligned_cols=47 Identities=30% Similarity=0.482 Sum_probs=40.7
Q ss_pred ccccCcccccCceecCCCCccchHHHHHHHhcC-CCCCCCcCcccccC
Q 040749 276 LCPITLEIMRDPVIIASGQTFERESVQKWFDSN-HRTCPKTRQTLAHL 322 (643)
Q Consensus 276 ~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~ 322 (643)
.|.||-+-=+|--|-||||..|-.|+..|-.+. ..+||+|+..+.-.
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 699999999998888999999999999999753 67899998776644
No 182
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.017 Score=55.85 Aligned_cols=38 Identities=34% Similarity=0.553 Sum_probs=33.6
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhc
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS 307 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~ 307 (643)
.+.+.-+|.+|++..+|||+.+.||.|||.||-+++-.
T Consensus 39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 35556688999999999999999999999999998864
No 183
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=2.5 Score=48.18 Aligned_cols=256 Identities=21% Similarity=0.236 Sum_probs=156.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-Ccc-----
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DES----- 436 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~----- 436 (643)
..+++=.+|.+...-+..+|+..+..+...++. .+.. ++..|=.+++++.+.+|-.|+++|..++. ++.
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c 320 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC 320 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence 455566667777778888999999988754432 2222 67777788899999999999999998875 221
Q ss_pred hHH---HHHh---cCChHHHHHHhcCCCHHHHH----HHHHHHHhccccccchhhhh-------------ccCChHHHHH
Q 040749 437 NKR---LIAQ---QGAIPAIIEILQSGSTEARE----NSAAALFSLSMLDENKITIG-------------LSDGIPPLVD 493 (643)
Q Consensus 437 ~k~---~i~~---~g~i~~Lv~lL~~~~~e~~~----~Aa~~L~~Ls~~~~~k~~i~-------------~~g~i~~Lv~ 493 (643)
|++ .|-. .=+-..+..+|+.|+..... ..+....++| +++|..++ ..+.+..|.+
T Consensus 321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 211 1211 11344566677777543333 3333344443 33333221 1244556666
Q ss_pred Hhcc-CChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHH
Q 040749 494 LLQN-GTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIE 571 (643)
Q Consensus 494 lL~~-~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~ 571 (643)
+|++ |--+.++....++..+.. +++.+.. ++..|..++.+. .....+..+|..|... |-....-...+.
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~E--gP~a~~Pskyir 469 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKE--GPKAPNPSKYIR 469 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence 6643 445566666666655543 3443332 345566666542 3345566666666431 111222345667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 572 TLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 572 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
.+...+.-.+..+|..|+.+|..+..+++.. ...+...|.+.+.+.++.+++.|...|+.+..
T Consensus 470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 470 FIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 7777666677889999999999998554322 23456677788899999999999999998874
No 184
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=0.86 Score=51.74 Aligned_cols=209 Identities=14% Similarity=0.117 Sum_probs=142.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHh
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ 443 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~ 443 (643)
-..|.++|.|.....+..|.+-|-.+...+.+. ....|..|+-..+.+.+++.-.---|...+..+++-..+
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL-- 108 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL-- 108 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence 456888999888888888887655444333331 235788899889999999888777777777665554433
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHH
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKAR 522 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~ 522 (643)
.|..+-+-|+.+++.+|.-|..+|..+- ..+..+=.+-++-+...+.++-+++.|+.||-.|=+- ++.+.+
T Consensus 109 --SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q 180 (968)
T KOG1060|consen 109 --SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ 180 (968)
T ss_pred --eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence 4667778889999999988888887662 2222222223333444567889999999999888654 444444
Q ss_pred HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 523 AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 523 lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
+ +..+-.+|.+.++.++-.|+.+...+|-+ .-..| ++-...+..++-.-+...+-.....|..-|+
T Consensus 181 L-----~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR 246 (968)
T KOG1060|consen 181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR 246 (968)
T ss_pred H-----HHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence 3 34556677888899999999988888743 22222 2456677777776666667777777666554
No 185
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.63 E-value=0.81 Score=46.68 Aligned_cols=221 Identities=17% Similarity=0.092 Sum_probs=142.0
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHH-hcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcchHHHHHh-cCChHH
Q 040749 374 SKLEVQKEAVRKIRLLSKENPENRILIA-DCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPA 449 (643)
Q Consensus 374 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~k~~i~~-~g~i~~ 449 (643)
-++-.+.-|+.++.++. -.++.|..+- +...-..++.+++.. +.++|.+.+-+++-|+.++.....|-. -..|..
T Consensus 161 i~~lTrlfav~cl~~l~-~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d 239 (432)
T COG5231 161 IDFLTRLFAVSCLSNLE-FDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND 239 (432)
T ss_pred HHHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 34445667888888887 4566666553 344555677777753 678999999999999887766544332 245667
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHhccccccchhhhh---ccCChHHHHHHhccC---ChhhHHHHHH--------------
Q 040749 450 IIEILQSGS-TEARENSAAALFSLSMLDENKITIG---LSDGIPPLVDLLQNG---TIRGKKDAVT-------------- 508 (643)
Q Consensus 450 Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~---~~g~i~~Lv~lL~~~---~~~~~~~A~~-------------- 508 (643)
++.+.+... ..+-..+++++.++.. ...|..|. -.|-+.+.|++|..+ +.+...+--.
T Consensus 240 li~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 240 LIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 777776543 4556677788888765 23333343 356566677776543 2222211100
Q ss_pred ---HHHHh-----ccC---------CcchHHHHH--cCChHHHHHHhccCChh-hHHHHHHHHHHHhC-ChhhHHHhhcC
Q 040749 509 ---ALFNL-----SLN---------QANKARAID--AGIVLPLMNLLEERNLG-MVDEALSILLLLAT-HPEGRHKIGQL 567 (643)
Q Consensus 509 ---aL~nL-----s~~---------~~n~~~lv~--~G~v~~Lv~lL~~~~~~-~~~~Al~~L~~La~-~~~~~~~i~~~ 567 (643)
-+..| +-. +.|...+.+ -.++..|.+++....+. ...-|+.=+..+.. .|+++..+...
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 01111 101 123344444 34678888888875555 45556666666654 79999999999
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
|+=..+++++.+.++++|-.|+.++..+.
T Consensus 399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999986654
No 186
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.57 E-value=0.36 Score=55.59 Aligned_cols=264 Identities=14% Similarity=0.105 Sum_probs=144.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH-HHHHh
Q 040749 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK-RLIAQ 443 (643)
Q Consensus 366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k-~~i~~ 443 (643)
.|++.+.+.|.+.|.-|+..|..-...+.-+-+.=.+...+..|+++|+..+.++|..|+.+|+-|+.. .+.+ ..+
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~-- 86 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI-- 86 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence 788899999999999998877754432221111112345788999999999999999999999988831 1111 111
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHH-hccccccchhhhhccCChHHHHHHhccC------ChhhHHHHHHHHHHhcc-
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALF-SLSMLDENKITIGLSDGIPPLVDLLQNG------TIRGKKDAVTALFNLSL- 515 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~------~~~~~~~A~~aL~nLs~- 515 (643)
++.|..-+-+|....+..+.-.|. ..+..+..-.....+.+++.+..-|..+ ...++-.++-.+.-+-.
T Consensus 87 ---ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr 163 (1233)
T KOG1824|consen 87 ---VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR 163 (1233)
T ss_pred ---HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence 222332222333333333322222 1222221111122234444444444332 23355555555543321
Q ss_pred CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 040749 516 NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLE 594 (643)
Q Consensus 516 ~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~ 594 (643)
..+--.. ...+....++.-+.++...++..|+.+|..|+..-. +... .+.+..|++-|.. .++....--+.+|..
T Consensus 164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~ 239 (1233)
T KOG1824|consen 164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLY--VELIEHLLKGLSNRTQMSATRTYIQCLAA 239 (1233)
T ss_pred hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHH--HHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence 1111111 234556667777777778889999999999987421 1111 1233444443332 233444445566667
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHh---hcCCHHHHHHHHHHHHHHHh
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLT---EGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL~~L~~ 639 (643)
+|+..+..... --..++|.+..+. ...+++.+++....+..+-+
T Consensus 240 i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 240 ICRQAGHRFGS-HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHhcchhhc-ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 77654321111 1134677777777 66788999999888876543
No 187
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.016 Score=61.35 Aligned_cols=51 Identities=20% Similarity=0.459 Sum_probs=38.9
Q ss_pred CCCccccccCccccc-----------------CceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 271 IPHEFLCPITLEIMR-----------------DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~-----------------dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
+...--|+||+.... +=..+||.|.|.+.|+++|.+.-.-.||.|+.+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 445567999986432 112359999999999999998555579999998864
No 188
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.42 E-value=1.5 Score=41.86 Aligned_cols=92 Identities=18% Similarity=0.229 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCCh-HHHHHHh
Q 040749 417 DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGI-PPLVDLL 495 (643)
Q Consensus 417 d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i-~~Lv~lL 495 (643)
|+.++.+++.+++.|+..-++ ++ ...++.+...|+++++.+|..|+.+|..|-..+..|. .|-+ ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l 72 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL 72 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence 578899999999999863322 21 2357889999999999999999999999976544332 2433 7788888
Q ss_pred ccCChhhHHHHHHHHHHhccC
Q 040749 496 QNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 496 ~~~~~~~~~~A~~aL~nLs~~ 516 (643)
.+.++.++..|..++..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999988765
No 189
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.33 E-value=2.1 Score=44.66 Aligned_cols=189 Identities=15% Similarity=0.136 Sum_probs=109.6
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccCChhhHHHHHHHHHHhccC---CcchH
Q 040749 447 IPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN---QANKA 521 (643)
Q Consensus 447 i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~ 521 (643)
+...+..+.......|+.+...+..+.........+.. ...+..+...++.|+.+-+..|+.++.-|+.. .....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 44445555666688899999888887654433333332 34577888888888776677777777777654 23344
Q ss_pred HHHHcCChHHHHHHhccCCh--hhHHHHHHHHHHH---hCC-hhhHHHhhcCCcHHHHHHH--Hhc-C---------ChH
Q 040749 522 RAIDAGIVLPLMNLLEERNL--GMVDEALSILLLL---ATH-PEGRHKIGQLSFIETLVEY--IRE-G---------TPK 583 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~--~~~~~Al~~L~~L---a~~-~~~~~~i~~~g~i~~Lv~l--L~~-~---------s~~ 583 (643)
.+.+ .+.|.|...+.+.+. ..+..++.+|+.+ +.. .+...... ..+..+... +.. + ++.
T Consensus 125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 4444 467888888877443 3334455455544 332 22222111 122222111 111 1 134
Q ss_pred HHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 584 NKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 584 ~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+...|+..-.-|...-+. ...... ...++.|..++.+.+..+|-.|-..|..|.+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 555555554444433332 233222 4469999999999999999999888887743
No 190
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.011 Score=57.82 Aligned_cols=56 Identities=14% Similarity=0.355 Sum_probs=44.5
Q ss_pred CCccccccCcccccCce----------ecCCCCccchHHHHHHHhcC-CCCCCCcCcccccCCCCcc
Q 040749 272 PHEFLCPITLEIMRDPV----------IIASGQTFERESVQKWFDSN-HRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv----------~~~cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~pn 327 (643)
.++-.|.+|+.-+.+.+ .++|+|.|.-.||..|+--| ..|||-|++..+...+..|
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn 288 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN 288 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence 35677999998776554 57999999999999999854 3589999988876655554
No 191
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=94.18 E-value=0.74 Score=50.19 Aligned_cols=152 Identities=19% Similarity=0.177 Sum_probs=114.9
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCC----hhhHHHHHHHHHHHhCChhhHH
Q 040749 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERN----LGMVDEALSILLLLATHPEGRH 562 (643)
Q Consensus 487 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~~~~~~ 562 (643)
....+..++.+|+...+..|+.-|..++........++...++..|..++.+++ ..+...++.++..+-.+.-..=
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 456778888899998998899999999999999999999999999999998743 3455555666655544321111
Q ss_pred HhhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 563 KIGQLSFIETLVEYIRE--GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 563 ~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
..+...+|.....++.- -...+-..|+.+|-++..++......+.++--++.|+..++.++.+++.+|..++..+-
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 11223455555555532 23456788999999999888888888888989999999999999999999999998664
No 192
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.17 E-value=0.38 Score=54.63 Aligned_cols=194 Identities=15% Similarity=0.123 Sum_probs=135.8
Q ss_pred CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH-hccccccchhhhhccCChHHHHHHhccCC-hhhHHHHHHHHH
Q 040749 434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALF-SLSMLDENKITIGLSDGIPPLVDLLQNGT-IRGKKDAVTALF 511 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~ 511 (643)
...-+...+..|+...|+++...+..+++-.+..+|. .++...+ .....++++.+.+.+.. .-....++.++.
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 4444566678999999999999888888888888887 2221100 01456777777765432 334578899999
Q ss_pred HhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHh-hc-CCcHHHHHHHHhcCChHHHHHH
Q 040749 512 NLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKI-GQ-LSFIETLVEYIREGTPKNKECA 588 (643)
Q Consensus 512 nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i-~~-~g~i~~Lv~lL~~~s~~~~e~A 588 (643)
||++.++ .+.++++.-.++.+-.++.+.++..+..++..+.||..++..-+.. ++ ...++.....+..........+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~ 647 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG 647 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence 9987544 5777888877887777787888899999999999999887665544 33 3456666666665555666667
Q ss_pred HHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhhcCCHHHHHHHHH
Q 040749 589 TAVLLELGANNSSFILAAL-QYGVYEHLIQLTEGGTSRAQRKANA 632 (643)
Q Consensus 589 ~~~L~~L~~~~~~~~~~~~-~~g~i~~L~~ll~~g~~~~k~~A~~ 632 (643)
+.++..+......++..+. -......+..++.++++.+|..-..
T Consensus 648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~ 692 (748)
T KOG4151|consen 648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV 692 (748)
T ss_pred cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence 7777767666655555333 2567788888888888888755443
No 193
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.16 E-value=0.25 Score=54.26 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=98.3
Q ss_pred cHHHHHhCCCCChHHHHHHHHHHHHhcCCcch---HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749 406 IPPLVQLLPYPDSKILEHAVTAVLNLSIDESN---KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482 (643)
Q Consensus 406 i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~---k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 482 (643)
|..++.+|+++.+.++.+|+.....|+.--.+ -..+...|.| |.+-|....+++.-....+++.+.+....+..-
T Consensus 606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq 683 (975)
T COG5181 606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ 683 (975)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence 34456788899999999999988888752211 1222233322 445555667888777777777765443332211
Q ss_pred -hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 483 -GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 483 -~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
--.|.+|.|..+|++....+..+....+..++.+.+...-..+ -.+--.|+++|.+.+.+++..|...+..++.
T Consensus 684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ 759 (975)
T COG5181 684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR 759 (975)
T ss_pred CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence 1268999999999999888888888888888865554221111 1123447777877788888888888887764
No 194
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=94.06 E-value=0.63 Score=46.55 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=93.5
Q ss_pred HHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccC-----ChhhHHHHHHHHHHHhC--ChhhHHHhhcCCcHHHHHHH
Q 040749 504 KDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEER-----NLGMVDEALSILLLLAT--HPEGRHKIGQLSFIETLVEY 576 (643)
Q Consensus 504 ~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~-----~~~~~~~Al~~L~~La~--~~~~~~~i~~~g~i~~Lv~l 576 (643)
-+|+..+..++++++.|..++++.+.--|..+|... -+.++-.++++++.|.. +++....+.+.+.+|..++.
T Consensus 68 cnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 68 CNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 456667778899999999999999888888888652 24567778999999987 45566677889999999999
Q ss_pred HhcCChHHHHHHHHHHHHHhcCCH---------HHHHHHHHCCcHHHHH-HHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 577 IREGTPKNKECATAVLLELGANNS---------SFILAALQYGVYEHLI-QLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 577 L~~~s~~~~e~A~~~L~~L~~~~~---------~~~~~~~~~g~i~~L~-~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
|..|+.-.|..|.-++..+-..+. +....+ ..++..++ .+....++|.-+...++-..|++.
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av--~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAV--AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHH--HHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 999999999999999988765432 221111 22344444 345566777777766666665543
No 195
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.034 Score=58.06 Aligned_cols=50 Identities=20% Similarity=0.460 Sum_probs=41.1
Q ss_pred CCccccccCcccccCce-----e---cCCCCccchHHHHHHHhcC------CCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPV-----I---IASGQTFERESVQKWFDSN------HRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv-----~---~~cg~ty~r~~I~~~~~~~------~~~cP~~~~~l~~ 321 (643)
-.+..|-||++...+++ . .+|-|+||..||.+|-... .+.||.|+.+...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~ 222 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF 222 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence 56789999999999888 3 4699999999999999633 3679999877653
No 196
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=93.87 E-value=2.9 Score=41.84 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=123.2
Q ss_pred hHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC---
Q 040749 360 QKEEIVSLVEQLSS--SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID--- 434 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~--- 434 (643)
+...++.++..|.. ..+-++.+|..+|..+. .+ +..+.|-++.+.+...+++....++..+-.-
T Consensus 65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~ 133 (289)
T KOG0567|consen 65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII 133 (289)
T ss_pred cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence 34678899988874 45667889999998876 22 2456666666555556666554555443210
Q ss_pred c--chHHHH--------HhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhH
Q 040749 435 E--SNKRLI--------AQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGK 503 (643)
Q Consensus 435 ~--~~k~~i--------~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~ 503 (643)
+ .+.... ...+-+..+-..|... .+....+ .++|.|- .++...+|.+|++-+..++.-.+
T Consensus 134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LR-------n~g~EeaI~al~~~l~~~Salfr 204 (289)
T KOG0567|consen 134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLR-------NIGTEEAINALIDGLADDSALFR 204 (289)
T ss_pred ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhh-------ccCcHHHHHHHHHhcccchHHHH
Confidence 0 000000 0112233333333322 2222222 3344441 23445678888888887787788
Q ss_pred HHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC
Q 040749 504 KDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT 581 (643)
Q Consensus 504 ~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s 581 (643)
..++.++..|- ..-+||.|.+.|.+ ..+-++.+|+.+|..++. ..++..|.+.+.+..
T Consensus 205 hEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 205 HEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence 88888887664 23468888888876 566778899999988765 357888889998888
Q ss_pred hHHHHHHHHHHHHHh
Q 040749 582 PKNKECATAVLLELG 596 (643)
Q Consensus 582 ~~~~e~A~~~L~~L~ 596 (643)
+-+++.+..+|..+-
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876553
No 197
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.83 E-value=0.9 Score=45.65 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh
Q 040749 543 MVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE 620 (643)
Q Consensus 543 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 620 (643)
....|+.+|.-++- ++..+..+.+...+..++.+|.. ..+.++..++.+|..+...++.+...+.+.+++..+..+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 35567788888776 89999999999999999999954 56889999999999999999999999999999999999998
Q ss_pred cC--CHHHHHHHHHHHHH
Q 040749 621 GG--TSRAQRKANALLQL 636 (643)
Q Consensus 621 ~g--~~~~k~~A~~lL~~ 636 (643)
+. +..+|-|....|..
T Consensus 187 ~~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYF 204 (257)
T ss_pred cccccHHHhHHHHHHHHH
Confidence 76 66788888777653
No 198
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=93.74 E-value=0.81 Score=48.18 Aligned_cols=196 Identities=14% Similarity=0.136 Sum_probs=144.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHH-----HHHhc--CCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-----LIADC--GAIPPLVQLLPYPDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~-----~i~~~--g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~ 433 (643)
.+.+..|+..|..-+.+.+..++....++.+.....+. .+..+ ..+..|+.-.. ++++--.+...|.....
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence 35678899999999999999999988888877665543 33322 23444444433 56666778888888888
Q ss_pred CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhc---cCChHHHHHHhccCChhhHHHHHHH
Q 040749 434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGL---SDGIPPLVDLLQNGTIRGKKDAVTA 509 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~a 509 (643)
++.--..+.....+..+.+....++-++...|..++..|-..+ ..-..... ...+.....+|.+++--.+..++..
T Consensus 153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 8877777778888888999999999999999999988865432 22222222 4567788889999999999999999
Q ss_pred HHHhccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749 510 LFNLSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHP 558 (643)
Q Consensus 510 L~nLs~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 558 (643)
|..|-....|...|.. ..-+..++.+|.+.+..++-+|..++.....+|
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence 9999999998766543 556778899999999999999999999887765
No 199
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.72 E-value=0.24 Score=39.59 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCC
Q 040749 503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLS 568 (643)
Q Consensus 503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g 568 (643)
.+.|++|+.|+++.+.....+-+.++++.++++... +...++--|..+|..++.+.++.+.+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 578999999999988888877788999999999875 667889999999999999999998877655
No 200
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.66 E-value=0.9 Score=49.57 Aligned_cols=155 Identities=19% Similarity=0.227 Sum_probs=111.8
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh----hhHHHHHHHHHHhccCCcchH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI----RGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n~~ 521 (643)
....+.+++.+|+...+..|...|.++|.+......+.+..++..|..++.+|.. ......++++..|-.+.---.
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 3456778899999989988999999999988888888888889999999998764 344455555555543332222
Q ss_pred HHHHcCChHHHHHHhc--cCChhhHHHHHHHHHHHhCChh-hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 522 RAIDAGIVLPLMNLLE--ERNLGMVDEALSILLLLATHPE-GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
..+...+|.....+.+ ..+..+...|+..|.++..+.. .+..+.+.--+..|+..+..++...+.+|.+.+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 2233233333333332 2456678889999999987655 566677777799999999999989999999988888755
Q ss_pred CH
Q 040749 599 NS 600 (643)
Q Consensus 599 ~~ 600 (643)
.+
T Consensus 244 a~ 245 (713)
T KOG2999|consen 244 AP 245 (713)
T ss_pred CC
Confidence 43
No 201
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.56 E-value=3.4 Score=45.52 Aligned_cols=190 Identities=14% Similarity=-0.008 Sum_probs=117.4
Q ss_pred hHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhc
Q 040749 360 QKEEIVSLVEQLSS-------SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s-------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs 432 (643)
-.+.+|.|+.+|.. ++|.....|..+|...+. -..+.|.+. ++..+-+-+.+++..-++.|+.+++.+-
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm 394 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence 45678999999975 356667777777777762 222334433 3344445567778888899999999887
Q ss_pred CCcc--hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc---CChhhHHHHH
Q 040749 433 IDES--NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN---GTIRGKKDAV 507 (643)
Q Consensus 433 ~~~~--~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~ 507 (643)
..+. ....+ -..++|.|..........++..++|++..++.. ....|...|.++..+.-..- +.+....+..
T Consensus 395 ~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs 471 (858)
T COG5215 395 HGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSINCS 471 (858)
T ss_pred cCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence 5432 23333 456899999998877788999999999988642 22233345667666665433 2566777888
Q ss_pred HHHHHhccCCcchH----HHHH---cCChHHHHHHhc--cCChhhHHHHHHHHHHHhC
Q 040749 508 TALFNLSLNQANKA----RAID---AGIVLPLMNLLE--ERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 508 ~aL~nLs~~~~n~~----~lv~---~G~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~ 556 (643)
++..||..+-.... .++. ..++..|++--. .++...+..+..+|..|..
T Consensus 472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~ 529 (858)
T COG5215 472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL 529 (858)
T ss_pred HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 88888874322111 1111 122333333321 2445566666666666644
No 202
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.38 E-value=1.5 Score=51.99 Aligned_cols=218 Identities=19% Similarity=0.209 Sum_probs=128.5
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-c-chHHHHHhcCChH
Q 040749 373 SSKLEVQKEAVRKIRLLSKENPENRILIADC--GAIPPLVQLLPYPDSKILEHAVTAVLNLSID-E-SNKRLIAQQGAIP 448 (643)
Q Consensus 373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~-~~k~~i~~~g~i~ 448 (643)
+.+..+|.++-+.|..+... +.......+. ..-..|..-+.+.+..++...+.+|..|-.. + +....+ ...|+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~ 741 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP 741 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence 45788999999999998854 3222222211 1122333344444556666666666655442 2 333333 23455
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhccc----cccchhhhhccCChHHHHHHhccC--ChhhHHHH--HHHHHHhccCCcch
Q 040749 449 AIIEILQSGSTEARENSAAALFSLSM----LDENKITIGLSDGIPPLVDLLQNG--TIRGKKDA--VTALFNLSLNQANK 520 (643)
Q Consensus 449 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A--~~aL~nLs~~~~n~ 520 (643)
-++-.++..+...+++|-++|..+.. .++.... ....|...+..+..| .......| +.++..+.....+
T Consensus 742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~- 818 (1176)
T KOG1248|consen 742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN- 818 (1176)
T ss_pred HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc-
Confidence 55555577789999999999998873 1111111 122556666666544 22222222 4444444432222
Q ss_pred HHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 521 ARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 521 ~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
+++ .+++..+...|.+.++.++..|++.+..++. .++..-.-.....++.+..++++.+...+...-..|-.|
T Consensus 819 --~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL 896 (1176)
T KOG1248|consen 819 --ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL 896 (1176)
T ss_pred --cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 222 3344555556677899999999999999876 343333333345788888888888888888888888888
Q ss_pred hcC
Q 040749 596 GAN 598 (643)
Q Consensus 596 ~~~ 598 (643)
++.
T Consensus 897 irk 899 (1176)
T KOG1248|consen 897 IRK 899 (1176)
T ss_pred HHH
Confidence 864
No 203
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=93.32 E-value=1.8 Score=45.20 Aligned_cols=184 Identities=18% Similarity=0.194 Sum_probs=103.9
Q ss_pred hCCCCChHHHHHHHHHHHHhcCCcchHHHHH--hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc---ccchhhhhccC
Q 040749 412 LLPYPDSKILEHAVTAVLNLSIDESNKRLIA--QQGAIPAIIEILQSGSTEARENSAAALFSLSML---DENKITIGLSD 486 (643)
Q Consensus 412 lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~~~g 486 (643)
.+.......|+.++..+.++.........+. ..-.++.+.+.++.|..+-+..|+.++.-|+.. ......+. ..
T Consensus 51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~ 129 (309)
T PF05004_consen 51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EE 129 (309)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HH
Confidence 3444457788888888877764333223222 233577888888888766566676666666543 12222222 35
Q ss_pred ChHHHHHHhccCCh--hhHHHHHHHHHHhccCCcc-hHHHHH-cCChHHHHH--Hhcc----------CChhhHHHHHHH
Q 040749 487 GIPPLVDLLQNGTI--RGKKDAVTALFNLSLNQAN-KARAID-AGIVLPLMN--LLEE----------RNLGMVDEALSI 550 (643)
Q Consensus 487 ~i~~Lv~lL~~~~~--~~~~~A~~aL~nLs~~~~n-~~~lv~-~G~v~~Lv~--lL~~----------~~~~~~~~Al~~ 550 (643)
..|.|...+.+++. ..+..++.+|.-++....+ -..+.+ ...+..+.. .... +++.+...|+..
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a 209 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA 209 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence 67888888877653 4444555566655432111 111110 011111111 1111 124577777776
Q ss_pred HHHHhCChhh--HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 551 LLLLATHPEG--RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 551 L~~La~~~~~--~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
-.-|...-+. ..... ...++.|..+|.+.+..+|..|..+|.-|..
T Consensus 210 W~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E 257 (309)
T PF05004_consen 210 WALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE 257 (309)
T ss_pred HHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 6666653322 22222 3579999999999999999998888876653
No 204
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.31 E-value=0.46 Score=40.44 Aligned_cols=70 Identities=13% Similarity=0.231 Sum_probs=54.9
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
..+++++..+.+.+.++|..|+.+|.+++......... .=..++..|.+++.+.++++|..|.-+-+.|.
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 57888888999999999999999999998754332211 12458899999999999999988876666654
No 205
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.22 E-value=0.088 Score=38.81 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=24.0
Q ss_pred cccccCcccccCceec-CCCCc--cchHH-HHHHHhcCCCCCCCcCcc
Q 040749 275 FLCPITLEIMRDPVII-ASGQT--FERES-VQKWFDSNHRTCPKTRQT 318 (643)
Q Consensus 275 f~CpIc~~~m~dPv~~-~cg~t--y~r~~-I~~~~~~~~~~cP~~~~~ 318 (643)
+.|||+...|.-|+-- .|.|. |+... |+.....+...||.|+++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 6899999999999975 68885 66643 333333566789999864
No 206
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.16 E-value=4.8 Score=45.45 Aligned_cols=237 Identities=14% Similarity=0.125 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHh
Q 040749 377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID--ESNKRLIAQQGAIPAIIEIL 454 (643)
Q Consensus 377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~--~~~k~~i~~~g~i~~Lv~lL 454 (643)
-++.+|+-++-.|.+.+|+. +-..+.+..++.+|...+-.+...+...+--|++. +..+..+- -++..|.++.
T Consensus 163 ~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~riv 237 (938)
T KOG1077|consen 163 YVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSRIV 237 (938)
T ss_pred HHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHHHH
Confidence 45566666666676666642 22234677888899887776666666666666663 23343331 1122222221
Q ss_pred c-------------CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhH-HHHHH----HHHHhc
Q 040749 455 Q-------------SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGK-KDAVT----ALFNLS 514 (643)
Q Consensus 455 ~-------------~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~-~~A~~----aL~nLs 514 (643)
. -+.|......+.+|.++-..++.-....--.++..++...+.. +..++ .+|-. -.-+|.
T Consensus 238 ~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~ 317 (938)
T KOG1077|consen 238 VVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA 317 (938)
T ss_pred hhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence 1 1346778888888887743333222111123344444444321 11111 12211 122343
Q ss_pred c-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHH
Q 040749 515 L-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVL 592 (643)
Q Consensus 515 ~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L 592 (643)
. .++....+.+ ++..|-++|.+.+..++-.|+..++.|++......++-.. ...++..|+ ..+-.+|..|+..|
T Consensus 318 ~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLL 393 (938)
T KOG1077|consen 318 IHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLL 393 (938)
T ss_pred HHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHH
Confidence 3 3333333433 4778899999988999999999999999987666666554 777888888 56788999999999
Q ss_pred HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHH
Q 040749 593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRK 629 (643)
Q Consensus 593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~ 629 (643)
..+|..+ +... ++.-|++.+.+-+..+|+.
T Consensus 394 Y~mcD~~--Nak~-----IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 394 YAMCDVS--NAKQ-----IVAELLQYLETADYSIREE 423 (938)
T ss_pred HHHhchh--hHHH-----HHHHHHHHHhhcchHHHHH
Confidence 9999654 3333 3444555665565555543
No 207
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=93.01 E-value=0.086 Score=51.84 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=37.4
Q ss_pred ccccccCcccccCceec-CCCCccchHHHHHHHhc-CCCCCCCcCcc
Q 040749 274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDS-NHRTCPKTRQT 318 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~-~~~~cP~~~~~ 318 (643)
+++|||+......|++- .|||.|+|..|+..+.. ....||.-+..
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 58999999999999985 79999999999999874 23469985544
No 208
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.80 E-value=0.32 Score=46.58 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=63.1
Q ss_pred hHHHHHcCChHHHHHHhcc---------CChhhHHHHHHHHHHHhCChhhHHHhhc-CCcHHHHHHHHhcCChHHHHHHH
Q 040749 520 KARAIDAGIVLPLMNLLEE---------RNLGMVDEALSILLLLATHPEGRHKIGQ-LSFIETLVEYIREGTPKNKECAT 589 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~ 589 (643)
...+++.|++..|+.+|.. .+......++.+|..|..+..|...+.. .+++..|+..|.+.++.++..|+
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 3457788888888888754 2335678899999999999999998887 58899999999999999999999
Q ss_pred HHHHHHh
Q 040749 590 AVLLELG 596 (643)
Q Consensus 590 ~~L~~L~ 596 (643)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 209
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.75 E-value=0.08 Score=51.58 Aligned_cols=52 Identities=15% Similarity=0.282 Sum_probs=42.4
Q ss_pred CCccccccCcccccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749 272 PHEFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 326 (643)
...|.|||++-.|.+-. +.+|||.|.-+.+++.- ..+|+.|++.....+.++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence 45699999999998763 45899999999888754 347999999999887654
No 210
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.65 E-value=0.47 Score=40.37 Aligned_cols=90 Identities=13% Similarity=0.184 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcC
Q 040749 503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREG 580 (643)
Q Consensus 503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~ 580 (643)
++-++.+|...+..-.....-.-.-++++++..+.+++..++..|+.+|.|++... +..+.. ..++..|.+++.+.
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence 44555566655543222222222457899999999999999999999999998643 333333 35678888888888
Q ss_pred ChHHHHHHHHHHHHH
Q 040749 581 TPKNKECATAVLLEL 595 (643)
Q Consensus 581 s~~~~e~A~~~L~~L 595 (643)
++.+|..| ..|.++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 88877666 555554
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.64 E-value=2.8 Score=50.03 Aligned_cols=252 Identities=15% Similarity=0.115 Sum_probs=146.4
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC---C-cchHHHHHhcCChHHH
Q 040749 375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI---D-ESNKRLIAQQGAIPAI 450 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~---~-~~~k~~i~~~g~i~~L 450 (643)
..+.+..|+.-|..++..-.+ ...-.-++|.++.++.....++|..|+.+|..+-. + +..-..|.-.-.+|.|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence 456788999999988853221 11112378999999999999999999998887643 1 2222334344578888
Q ss_pred HHHhcCC-CHHHHHHHHHHHHhccc------------------cccchhhhhc----------cCCh-HHHHHHhccCCh
Q 040749 451 IEILQSG-STEARENSAAALFSLSM------------------LDENKITIGL----------SDGI-PPLVDLLQNGTI 500 (643)
Q Consensus 451 v~lL~~~-~~e~~~~Aa~~L~~Ls~------------------~~~~k~~i~~----------~g~i-~~Lv~lL~~~~~ 500 (643)
-.++.+. ...+|..=|..|..|+. ++.+-....+ ...+ ..++.||.+.++
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~ 592 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP 592 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence 8888763 33333333333333321 1111100000 0112 223334444445
Q ss_pred hhHHHHHHHHHHhccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHH
Q 040749 501 RGKKDAVTALFNLSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEY 576 (643)
Q Consensus 501 ~~~~~A~~aL~nLs~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~l 576 (643)
-+|..-+..|.-||. .+.+ .=+++.|+.+|++.+..++..-...+.-+|..-.-| -++...+|.|.+-
T Consensus 593 ~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ 664 (1431)
T KOG1240|consen 593 IVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQG 664 (1431)
T ss_pred HHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHh
Confidence 566555555665653 1222 124667777787776666555444444443322111 1245678888888
Q ss_pred HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 577 IREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 577 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
|.++.+.+-..|+.+|..||..+-=....+ ..+++...-++-+.+.=+|+.+..++....+
T Consensus 665 ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 665 LTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred ccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 888889999999999999997643111111 1234555566777888889888888776543
No 212
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.56 E-value=3.2 Score=44.72 Aligned_cols=225 Identities=14% Similarity=0.134 Sum_probs=132.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCc---hhHHHHHhcCCcHHHHHhCCCC-------ChHHHHHHHHHHHHhcCCcc
Q 040749 367 LVEQLSSSKLEVQKEAVRKIRLLSKENP---ENRILIADCGAIPPLVQLLPYP-------DSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 367 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~-------d~~~~~~a~~~L~nLs~~~~ 436 (643)
+..++...+.+.|..|+--+..++|.++ .+|..+.++-+.+.+-++|.+. |...+.-+++.|.-.+.+++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 5556666677778888888888887654 5688899998999999999764 23345667778887887765
Q ss_pred h--HHHHHhcCChHHHHHHhcCC-CHH------HHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-hhHHHH
Q 040749 437 N--KRLIAQQGAIPAIIEILQSG-STE------ARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-RGKKDA 506 (643)
Q Consensus 437 ~--k~~i~~~g~i~~Lv~lL~~~-~~e------~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A 506 (643)
- -..|+ ..||.|..++..+ +++ ..+.+-.+|...+..+.....+...|+++.+.++-.-.+- --...|
T Consensus 96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 33443 4689999999754 222 5677888999999888888888899999999876432111 111222
Q ss_pred HHHHHHh----ccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-------hhhHHHhhcCCcHHHHHH
Q 040749 507 VTALFNL----SLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-------PEGRHKIGQLSFIETLVE 575 (643)
Q Consensus 507 ~~aL~nL----s~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-------~~~~~~i~~~g~i~~Lv~ 575 (643)
+..+.-+ -..++...++... +..+..=+...+....-+.+.+|..+-.. +.-+..++....-.-++.
T Consensus 174 l~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~ 251 (698)
T KOG2611|consen 174 LKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVA 251 (698)
T ss_pred HHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHH
Confidence 2222211 1223333333221 22232222223445555667777644221 112222222222344556
Q ss_pred HHhcC-ChHHHHHHHHHHHHH
Q 040749 576 YIREG-TPKNKECATAVLLEL 595 (643)
Q Consensus 576 lL~~~-s~~~~e~A~~~L~~L 595 (643)
+|.+. +|..|..|+....++
T Consensus 252 IL~~kv~p~qr~pAL~Laa~~ 272 (698)
T KOG2611|consen 252 ILQNKVAPSQRLPALILAANM 272 (698)
T ss_pred HHhcccCchhcChHHHHHHHH
Confidence 66653 456666665554444
No 213
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.084 Score=55.09 Aligned_cols=47 Identities=19% Similarity=0.537 Sum_probs=39.4
Q ss_pred CCCccccccCcccccC---ceecCCCCccchHHHHHHHhcCC--CCCCCcCc
Q 040749 271 IPHEFLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNH--RTCPKTRQ 317 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~--~~cP~~~~ 317 (643)
...-|.|||..+-=.| |+.++|||..++..|.+..+.|. +.||-|-.
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 3445899999987763 89999999999999999998777 67999943
No 214
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.34 E-value=0.13 Score=40.88 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=34.0
Q ss_pred cccccCccccc----Cceec-CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMR----DPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~----dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
-.||-|.--|. =|+.- -|.|.|.-.||.+|++.. ..||.++++..
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~ 81 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWV 81 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCceeE
Confidence 45777777663 13433 599999999999999974 47999998754
No 215
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.33 E-value=4.8 Score=47.23 Aligned_cols=252 Identities=17% Similarity=0.199 Sum_probs=151.6
Q ss_pred HHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCC----
Q 040749 383 VRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGS---- 458 (643)
Q Consensus 383 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~---- 458 (643)
...|-.+.|.+.+|...+.+++++..++.++-+ .+-+...+..+.-|...+..+. ....+-.+++.|++|-
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqv---hhqelmalVdtLksgmvt~I 737 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQV---HHQELMALVDTLKSGMVTRI 737 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHhcceecc
Confidence 446777888999999999999999999988844 3334444555544443322211 1223456677776641
Q ss_pred --------HHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhcc----------CChhhHHHHHHHHHH---h--c
Q 040749 459 --------TEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQN----------GTIRGKKDAVTALFN---L--S 514 (643)
Q Consensus 459 --------~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~~~~~A~~aL~n---L--s 514 (643)
..+......++|..- .+...+..+++.+++..|...|.. ++..+...-...|+. + +
T Consensus 738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc 817 (2799)
T KOG1788|consen 738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC 817 (2799)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence 123344455666654 334567778888888888877642 122222222333332 2 3
Q ss_pred cCCcchHHH-------------HHcC---------ChHHHHHHh-cc-CChhhH--HHHHHHHHHHhC------Ch----
Q 040749 515 LNQANKARA-------------IDAG---------IVLPLMNLL-EE-RNLGMV--DEALSILLLLAT------HP---- 558 (643)
Q Consensus 515 ~~~~n~~~l-------------v~~G---------~v~~Lv~lL-~~-~~~~~~--~~Al~~L~~La~------~~---- 558 (643)
.++.|+.++ .+.| +|..|.++- .. ..+.+. ..|+..+-.+-. .|
T Consensus 818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf 897 (2799)
T KOG1788|consen 818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF 897 (2799)
T ss_pred hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence 456665433 2233 222222221 11 122222 223333333311 12
Q ss_pred -hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh---hcCCHHHHHHHHHHH
Q 040749 559 -EGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLT---EGGTSRAQRKANALL 634 (643)
Q Consensus 559 -~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL 634 (643)
..++.|...|++..|++.+-...|..+..-+..|-.+.+.++.+....-..|.+..|++++ .+|+...-..|..++
T Consensus 898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv 977 (2799)
T KOG1788|consen 898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV 977 (2799)
T ss_pred CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence 2356788899999999999888899999999999999999887776666788998888776 456665666777777
Q ss_pred HHHHh
Q 040749 635 QLISK 639 (643)
Q Consensus 635 ~~L~~ 639 (643)
.+|+-
T Consensus 978 emLga 982 (2799)
T KOG1788|consen 978 EMLGA 982 (2799)
T ss_pred HHHhh
Confidence 76654
No 216
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.29 E-value=0.38 Score=44.92 Aligned_cols=146 Identities=17% Similarity=0.193 Sum_probs=97.5
Q ss_pred CChHHHHHHhcC--CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc-hH
Q 040749 445 GAIPAIIEILQS--GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-KA 521 (643)
Q Consensus 445 g~i~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~ 521 (643)
..++.++..|.. .+.++|..+.-++..+- +..+... ..-.-+.+-.++..++.+....+..++..|--.... ..
T Consensus 3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 345666665553 46678888888887772 3233222 112223333344555556777777777777654444 33
Q ss_pred HH-HHcCChHHHHHHhc--cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChH-HHHHHHHHHHH
Q 040749 522 RA-IDAGIVLPLMNLLE--ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPK-NKECATAVLLE 594 (643)
Q Consensus 522 ~l-v~~G~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~-~~e~A~~~L~~ 594 (643)
.+ ...|.++.++.+.. ..+......++.+|..=|.+...|..+.+ .+++.|-+++.. .++. .|..|+-+|..
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 33 36899999999998 67888888999999988888888888776 688888888854 4455 68888877764
No 217
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=92.27 E-value=2.7 Score=48.61 Aligned_cols=216 Identities=14% Similarity=0.107 Sum_probs=142.7
Q ss_pred CCChHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhh---ccCChH
Q 040749 415 YPDSKILEHAVTAVLNLSIDE-SNKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIG---LSDGIP 489 (643)
Q Consensus 415 ~~d~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~---~~g~i~ 489 (643)
+..+...-.+.+++...+... .+...+ ...+...+..+. +..+.++..|..+++.-+ +.+.. .++.+.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild 533 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILD 533 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHH
Confidence 345555556666666554321 122211 112333344443 334567777777777665 22221 267788
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcC
Q 040749 490 PLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQL 567 (643)
Q Consensus 490 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~ 567 (643)
.|..+....+.++.-.-..+|...+..+.......++.+.|..+.++.. .++.+...+-.++..|+....+..-+. .
T Consensus 534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e 612 (1005)
T KOG2274|consen 534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-E 612 (1005)
T ss_pred HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-H
Confidence 8888887778888888888999888888888888888888888888754 778888888888888877554443333 3
Q ss_pred CcHHHHHHHHhcCC----hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh-hcCCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGT----PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLT-EGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s----~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~L~ 638 (643)
..+|.++..|.... +....-|+.+|..+.++.+.-.....-.-++|++.++. .+++...-+.|..+|+.+-
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I 688 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI 688 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence 68999999998654 45567788888878887664443333344677777765 4556667788888888664
No 218
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.26 E-value=5.5 Score=43.00 Aligned_cols=145 Identities=17% Similarity=0.135 Sum_probs=98.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcccccc----chhhhhccCChHHHHHHhccCC-------hhhHHHHHHHHHHhccCCc
Q 040749 450 IIEILQSGSTEARENSAAALFSLSMLDE----NKITIGLSDGIPPLVDLLQNGT-------IRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 450 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~~-------~~~~~~A~~aL~nLs~~~~ 518 (643)
+..++...+.+-+-.|.-.+..+...++ +|..+.+.-+.+.+=+++.+++ .-.+..++..|...|..++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 4455555555555555555556654433 5667777777888888887542 2234556677777787776
Q ss_pred c--hHHHHHcCChHHHHHHhcc-CChh------hHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHH
Q 040749 519 N--KARAIDAGIVLPLMNLLEE-RNLG------MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECA 588 (643)
Q Consensus 519 n--~~~lv~~G~v~~Lv~lL~~-~~~~------~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A 588 (643)
- ...|++ .||.|.+++.. .+++ +.+.+..+|..+++++.|...++..|+++.+.++-...+ ......|
T Consensus 96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala 173 (698)
T KOG2611|consen 96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA 173 (698)
T ss_pred hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence 4 345665 58999999875 3444 889999999999999999999999999999997665332 2334445
Q ss_pred HHHHHHHh
Q 040749 589 TAVLLELG 596 (643)
Q Consensus 589 ~~~L~~L~ 596 (643)
+.++.-+.
T Consensus 174 l~Vlll~~ 181 (698)
T KOG2611|consen 174 LKVLLLLV 181 (698)
T ss_pred HHHHHHHH
Confidence 55554443
No 219
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.18 E-value=2.3 Score=44.20 Aligned_cols=168 Identities=16% Similarity=0.163 Sum_probs=107.6
Q ss_pred CcHHHH-HhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch--h-
Q 040749 405 AIPPLV-QLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK--I- 480 (643)
Q Consensus 405 ~i~~Lv-~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k--~- 480 (643)
.+..|+ ..+.++++.+|+.|+.+|+-.+.-+.. ++ ...++.+...++.++.+++..|+.+++.+....... .
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~ 102 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS 102 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence 344443 677888999999999999998875442 11 224677888888889999999999999986432211 1
Q ss_pred ------hhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc----CChhhHHHHHHH
Q 040749 481 ------TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE----RNLGMVDEALSI 550 (643)
Q Consensus 481 ------~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~----~~~~~~~~Al~~ 550 (643)
.......+..+...+.+.+++++..|+..+..|-....... ...++..|+-+..+ .+..++..--..
T Consensus 103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F 179 (298)
T PF12719_consen 103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF 179 (298)
T ss_pred hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence 11224567778888888888999999999998765443322 12334445444444 223333333344
Q ss_pred HHHHhCChhhHHHhhcCCcHHHHHHHHhc
Q 040749 551 LLLLATHPEGRHKIGQLSFIETLVEYIRE 579 (643)
Q Consensus 551 L~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 579 (643)
+-..|......+......+++.+-.+...
T Consensus 180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 180 FPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 45556644433455555677777777764
No 220
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.15 E-value=2.6 Score=45.10 Aligned_cols=237 Identities=19% Similarity=0.205 Sum_probs=133.6
Q ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-Ch-HHHHHHHHHHHHhcCCcch
Q 040749 361 KEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DS-KILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 361 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~-~~~~~a~~~L~nLs~~~~~ 437 (643)
.+.+..++..|. +.+...|+.++-.|..-+ .++..|..+..+|.+..+++.+... +. ..--.++.+++-++.+..+
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 356888888888 345677888888888877 4789999999999999999998543 33 3333344445555555555
Q ss_pred HHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc---------cCChhhH
Q 040749 438 KRLIAQQGAIPAIIEILQSG-----STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ---------NGTIRGK 503 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------~~~~~~~ 503 (643)
-..+...+.+..++.++... ..+....-.. +++ ++. ...+..+...+. ......+
T Consensus 99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~ls-------k~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NLS-------KVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred hhhhhchhHHHHHHHHhccccccccccchhhhhhh---hhh-------HHH-HHHHHHHHHHHhccccccccCCcccccc
Confidence 55555566666767777611 0000000000 000 000 011111111110 1122334
Q ss_pred HHHHHHHHHhc------------c---CCcchHHHHHcCChHHHHHHhcc----C------------ChhhHHHHHHHHH
Q 040749 504 KDAVTALFNLS------------L---NQANKARAIDAGIVLPLMNLLEE----R------------NLGMVDEALSILL 552 (643)
Q Consensus 504 ~~A~~aL~nLs------------~---~~~n~~~lv~~G~v~~Lv~lL~~----~------------~~~~~~~Al~~L~ 552 (643)
..|+.+|..++ . .+-.+..+...|++..++..+.+ . +-.....++.+|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 45555555552 0 11225566778889999998862 1 1123566888888
Q ss_pred HHhC-ChhhHHHhhcC--CcHHH-HHHHHhcC---ChHHHHHHHHHHHHHhcCCHHHHHHHHHC
Q 040749 553 LLAT-HPEGRHKIGQL--SFIET-LVEYIREG---TPKNKECATAVLLELGANNSSFILAALQY 609 (643)
Q Consensus 553 ~La~-~~~~~~~i~~~--g~i~~-Lv~lL~~~---s~~~~e~A~~~L~~L~~~~~~~~~~~~~~ 609 (643)
+.+- +.+++...... +.++. +..++..- .+.....++.++.|+..++|..+..+...
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~ 311 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP 311 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence 8765 44555555442 33333 33333322 23346788999999999888776665543
No 221
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=92.15 E-value=2.3 Score=41.39 Aligned_cols=146 Identities=13% Similarity=0.105 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc---CC--CHHHHHHHHHHHHhcccccc--chhhhhccCChHHHHH
Q 040749 421 LEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ---SG--STEARENSAAALFSLSMLDE--NKITIGLSDGIPPLVD 493 (643)
Q Consensus 421 ~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~---~~--~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~ 493 (643)
..+|+..|--++.+++.|..+.++..---+-..|. +. ....|..+..++..|..+++ ....+.....+|.+++
T Consensus 117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 45677777778889999999987764333334443 22 25678888999999886654 3344556899999999
Q ss_pred HhccCChhhHHHHHHHHHHhccCCcchHHHHH--------cCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHh
Q 040749 494 LLQNGTIRGKKDAVTALFNLSLNQANKARAID--------AGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKI 564 (643)
Q Consensus 494 lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i 564 (643)
++..|+.-.+..|+..+..+..++.+-..+.. ..++..++..+- .+...+...++.+-..|+..+..|..+
T Consensus 197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL 276 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL 276 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence 99999998888888888777666665433321 223333443332 366778888888888888888888765
Q ss_pred hc
Q 040749 565 GQ 566 (643)
Q Consensus 565 ~~ 566 (643)
..
T Consensus 277 ~~ 278 (315)
T COG5209 277 SS 278 (315)
T ss_pred hc
Confidence 43
No 222
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.06 E-value=0.09 Score=53.50 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=39.4
Q ss_pred CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
++-.||||.---...|+.||||.-|..||.+++-. ...|=.|+....
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~ 467 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI 467 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence 56789999988888899999999999999999874 456888866544
No 223
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=92.06 E-value=9.3 Score=42.26 Aligned_cols=270 Identities=16% Similarity=0.088 Sum_probs=156.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCc-HHHH-HhCCCC-ChHHHHHHHHHHHH-hc----
Q 040749 362 EEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAI-PPLV-QLLPYP-DSKILEHAVTAVLN-LS---- 432 (643)
Q Consensus 362 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i-~~Lv-~lL~~~-d~~~~~~a~~~L~n-Ls---- 432 (643)
+....++...... ....++.++..+...+. +..-...+...+.| -.++ ..++.+ +..++-.|+.+|.+ +-
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555543 34567788888888873 33334444444432 2233 344543 77888899999887 32
Q ss_pred --CCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHH
Q 040749 433 --IDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTA 509 (643)
Q Consensus 433 --~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a 509 (643)
.++.++..+ +...++.-+.++.+++..|-.+|..+-.. ...-..+.+..........+++.++++...|...
T Consensus 212 nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEf 286 (858)
T COG5215 212 NFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEF 286 (858)
T ss_pred hhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence 123333333 33445566677888888888888876432 1222233333333444556778888887777665
Q ss_pred HHHhccCCc-----------------chHHHHHcCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHhh
Q 040749 510 LFNLSLNQA-----------------NKARAIDAGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKIG 565 (643)
Q Consensus 510 L~nLs~~~~-----------------n~~~lv~~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~ 565 (643)
-..+|...- +-.+..-+.++|.|+++|.. .+..+-..|..+|...+.... ..|+
T Consensus 287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~ 364 (858)
T COG5215 287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIM 364 (858)
T ss_pred HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhH
Confidence 444442110 11112234588999999965 233445555555554443211 1122
Q ss_pred cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 566 QLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 566 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+. ++.-+-.-+++.+-..++.|+.++..+..+..+.+..-.-..++|.+...+.+..--++..+.+++..+.++
T Consensus 365 ~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 365 RP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred HH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 21 222223344566778899999999998766444443333455788888888777778889999998888765
No 224
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=91.82 E-value=0.069 Score=60.87 Aligned_cols=50 Identities=24% Similarity=0.554 Sum_probs=37.4
Q ss_pred CCCccccccCccccc--C---c--eecCCCCccchHHHHHHHhc-CCCCCCCcCcccc
Q 040749 271 IPHEFLCPITLEIMR--D---P--VIIASGQTFERESVQKWFDS-NHRTCPKTRQTLA 320 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~--d---P--v~~~cg~ty~r~~I~~~~~~-~~~~cP~~~~~l~ 320 (643)
....-.|+||..++. | | .-..|.|.|.-+|+-+||.+ +..+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 344457999998876 2 2 12347799999999999995 6678999996554
No 225
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=91.80 E-value=3.4 Score=48.12 Aligned_cols=210 Identities=15% Similarity=0.164 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHh
Q 040749 375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL 454 (643)
.+.++..++..+.++++.-+ ......+.+|.+..+...+...+++.|...+.++...-+..... .....+.++...
T Consensus 250 ~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~-~~~~~~~l~~~~ 325 (759)
T KOG0211|consen 250 TPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDV-VKSLTESLVQAV 325 (759)
T ss_pred chhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhh-hhhhhHHHHHHh
Confidence 45666677777777764322 25666788999999988887889999988888876521111011 234678888888
Q ss_pred cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc--CCcchHHHHHcCChHHH
Q 040749 455 QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL--NQANKARAIDAGIVLPL 532 (643)
Q Consensus 455 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~--~~~n~~~lv~~G~v~~L 532 (643)
..++...+...+.....|+..=.- ..+...-+++...+++....+++..++.-...++. +.+....+....++|.+
T Consensus 326 ~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~ 403 (759)
T KOG0211|consen 326 EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEV 403 (759)
T ss_pred cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHH
Confidence 889999998888888877642111 34445667888888887777777666665555543 33334455556667777
Q ss_pred HHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749 533 MNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL 592 (643)
Q Consensus 533 v~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 592 (643)
-.+..+.+..+....+.....++--- ++..-+ ....+.+...+++..+.++.+-...+
T Consensus 404 ~~lv~d~~~~vr~a~a~~~~~~~p~~-~k~~ti-~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 404 QVLVLDNALHVRSALASVITGLSPIL-PKERTI-SELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred HHHHhcccchHHHHHhccccccCccC-CcCcCc-cccChhhhhhcchhhHHHHHhhHHHH
Confidence 77777777777766666666553311 111111 13345555555556666666666544
No 226
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.75 E-value=0.11 Score=53.71 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=34.8
Q ss_pred ccccccCcccccCce----ecCCCCccchHHHHHHHhcC--CCCCCCcCcccccC
Q 040749 274 EFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSN--HRTCPKTRQTLAHL 322 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~ 322 (643)
.-.|.||-+....-. |-.|||+|.-.|+++||... +++||.|+-.+...
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence 456999955543211 23599999999999999943 35899998555443
No 227
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=91.69 E-value=0.05 Score=62.26 Aligned_cols=48 Identities=23% Similarity=0.418 Sum_probs=40.4
Q ss_pred cccccCcccccCceecCCCCccchHHHHHHHhcCC-CCCCCcCcccccCC
Q 040749 275 FLCPITLEIMRDPVIIASGQTFERESVQKWFDSNH-RTCPKTRQTLAHLS 323 (643)
Q Consensus 275 f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~-~~cP~~~~~l~~~~ 323 (643)
+.|++|.+ ..+|+++.|||.||+.|+.+.+...+ ..||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 89999999 88899999999999999999988533 35999987766543
No 228
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.42 E-value=0.15 Score=37.00 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=21.8
Q ss_pred cccCccccc--Cceec--CCCCccchHHHHHHHhcCCCCCCCcCccc
Q 040749 277 CPITLEIMR--DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTL 319 (643)
Q Consensus 277 CpIc~~~m~--dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l 319 (643)
||+|.+.|. |--.. +||+..|+.|..+-...++..||-|+++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789998883 32334 58999999999888775566899998764
No 229
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.35 E-value=17 Score=36.48 Aligned_cols=195 Identities=16% Similarity=0.161 Sum_probs=114.3
Q ss_pred cCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc---
Q 040749 403 CGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--- 477 (643)
Q Consensus 403 ~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--- 477 (643)
..++|.|+..|... .+-++..|..+|.++. .....+.+-+..+.+..++++.+.-++..+--.+.
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~ 135 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK 135 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence 34788888887755 4567778888887765 23334444444445555666655555555521110
Q ss_pred --chhhhh--------ccCChHHHHHHhccCC-h-hhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHH
Q 040749 478 --NKITIG--------LSDGIPPLVDLLQNGT-I-RGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVD 545 (643)
Q Consensus 478 --~k~~i~--------~~g~i~~Lv~lL~~~~-~-~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~ 545 (643)
+..... ..+-+..|-..|.+.+ + --++.|..+|.|+-. ..+|..|++-+..++.-.+.
T Consensus 136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfrh 205 (289)
T KOG0567|consen 136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRH 205 (289)
T ss_pred ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHH
Confidence 000111 1122344444343322 1 123334444444321 11344555556556666677
Q ss_pred HHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC
Q 040749 546 EALSILLLLATHPEGRHKIGQLSFIETLVEYIRE--GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGT 623 (643)
Q Consensus 546 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~ 623 (643)
++..+|..|-+ .-.|+.|.+.|.+ ..|.+|-.|+.+|..++.. ..++.|.+++.+..
T Consensus 206 EvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~ 264 (289)
T KOG0567|consen 206 EVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEE 264 (289)
T ss_pred HHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcH
Confidence 78888877643 3468889888875 4588999999999888642 35677788888888
Q ss_pred HHHHHHHHHHHHHHH
Q 040749 624 SRAQRKANALLQLIS 638 (643)
Q Consensus 624 ~~~k~~A~~lL~~L~ 638 (643)
+-+++-+...|.++.
T Consensus 265 ~vv~esc~valdm~e 279 (289)
T KOG0567|consen 265 RVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888877777776553
No 230
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=91.34 E-value=0.9 Score=44.76 Aligned_cols=87 Identities=22% Similarity=0.185 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHhCChhhHHHhhcCCcHH-------HHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcH
Q 040749 542 GMVDEALSILLLLATHPEGRHKIGQLSFIE-------TLVEYIR-EGTPKNKECATAVLLELGANNSSFI-LAALQYGVY 612 (643)
Q Consensus 542 ~~~~~Al~~L~~La~~~~~~~~i~~~g~i~-------~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~-~~~~~~g~i 612 (643)
.-+..|+.+|+.|+-.+.+...+...+-.. .|++++. .+++-.||.|+.+|.+||..+...+ ..+.+.+.+
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 448899999999999888888887765543 3444443 3568889999999999999988766 445689999
Q ss_pred HHHHHHhhcCCHHHHH
Q 040749 613 EHLIQLTEGGTSRAQR 628 (643)
Q Consensus 613 ~~L~~ll~~g~~~~k~ 628 (643)
..|+.++......++.
T Consensus 219 ~~Li~FiE~a~~~~~~ 234 (257)
T PF12031_consen 219 SHLIAFIEDAEQNAHQ 234 (257)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999887554443
No 231
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.21 E-value=3.1 Score=47.93 Aligned_cols=210 Identities=14% Similarity=0.114 Sum_probs=127.7
Q ss_pred ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHH-h
Q 040749 417 DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDL-L 495 (643)
Q Consensus 417 d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L 495 (643)
-+.++..|+..|..+....+....+...+++...++.|++.+..+--+|...+..|+.. .....+|-|... .
T Consensus 740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYL 812 (982)
T ss_pred cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHH
Confidence 34567788888888887666666777888999999999998888888888877777643 123455666652 2
Q ss_pred ccC---ChhhHHHHHHHHHHhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHhhcCCc
Q 040749 496 QNG---TIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG--RHKIGQLSF 569 (643)
Q Consensus 496 ~~~---~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~~g~ 569 (643)
... .++.+...-.|+.++....+ -..+-. +-.+...+..+++++...+..+++.|++||.--.. -..+. .+
T Consensus 813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev 889 (982)
T KOG4653|consen 813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EV 889 (982)
T ss_pred hcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HH
Confidence 211 12222223355555543221 111111 23455566666767777788999999999873221 11222 34
Q ss_pred HHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHH---CCcHHHHHHHhhcC-CHHHHHHHHHHHHH
Q 040749 570 IETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQ---YGVYEHLIQLTEGG-TSRAQRKANALLQL 636 (643)
Q Consensus 570 i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~---~g~i~~L~~ll~~g-~~~~k~~A~~lL~~ 636 (643)
+..++.+.. ++++-+|..|+-++..+-.+.+.....+.. ......+..+.... ++.+|-.|...|..
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee 961 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE 961 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 555666555 467889999999998887665544444332 33455555555554 44455555555443
No 232
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.00 E-value=3.7 Score=39.04 Aligned_cols=93 Identities=23% Similarity=0.221 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhc
Q 040749 458 STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE 537 (643)
Q Consensus 458 ~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~ 537 (643)
++.+|.++..++..|+....+ ++ ...+|.+...|+++++.+++.|+.+|.+|...+--+.+ ...+..++..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 467889999999988753322 11 34678899999999999999999999999865433322 223367778888
Q ss_pred cCChhhHHHHHHHHHHHhCC
Q 040749 538 ERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 538 ~~~~~~~~~Al~~L~~La~~ 557 (643)
++++.++..|...+..+...
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKK 93 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999998765
No 233
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=0.14 Score=52.88 Aligned_cols=47 Identities=21% Similarity=0.335 Sum_probs=38.0
Q ss_pred ccccccCcccccCceecCCCCcc-chHHHHHHHhcCCCCCCCcCccccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTF-ERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty-~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
--.|=||+.--+|-+++||-|.. |..|-... .-.+..||.||+++..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchHh
Confidence 35799999999999999999975 99997653 3334579999998764
No 234
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.77 E-value=0.96 Score=43.24 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=79.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC---------CChHHHHHHHHHHHHh
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY---------PDSKILEHAVTAVLNL 431 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~---------~d~~~~~~a~~~L~nL 431 (643)
.....++..|.+..... +.+..|+.....++ ..-..+++.||+..|+.+|.. .+...+..++.+|..+
T Consensus 66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 45677788887655432 44555554443333 445667788999999988763 2457788899999999
Q ss_pred cCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749 432 SIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLS 473 (643)
Q Consensus 432 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 473 (643)
..+..+...+. ..+++..|+..|.+.+..++..++.+|..++
T Consensus 144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 98888877777 5789999999999999999999999988765
No 235
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.65 E-value=0.58 Score=41.15 Aligned_cols=70 Identities=13% Similarity=0.151 Sum_probs=56.2
Q ss_pred CcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIRE-GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 568 g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
..+..|+++|.. .++.+..-|+.=|..++..-|..+..+.+.|+-..+++++.+.++++|..|..+++.+
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 113 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL 113 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 358889999953 3566666677778889988888888888899999999999999999999999998865
No 236
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=90.63 E-value=0.15 Score=37.89 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.1
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
+..|=.|...-...++++|||..|+.|..-+ ....||.|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence 4556677777788899999999999886543 3346999999887643
No 237
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=90.58 E-value=0.21 Score=50.05 Aligned_cols=49 Identities=20% Similarity=0.355 Sum_probs=38.7
Q ss_pred ccccCcc-cccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749 276 LCPITLE-IMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 276 ~CpIc~~-~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 324 (643)
.||+|.. .+..|- +-+|||+.|-+|.-+.|..|...||.|+..+-...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence 4888864 344552 238999999999999999999999999888765543
No 238
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=0.12 Score=40.78 Aligned_cols=49 Identities=27% Similarity=0.524 Sum_probs=34.3
Q ss_pred CCccccccCcccccC-ceec-CCCCccchHHHHHHHhc--CCCCCCCcCcccc
Q 040749 272 PHEFLCPITLEIMRD-PVII-ASGQTFERESVQKWFDS--NHRTCPKTRQTLA 320 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-Pv~~-~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~ 320 (643)
|-+-.||-|.-.=.| |.+. .|-|.|-..||.+|++. +...||+||+..+
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 444556666544444 4443 68999999999999984 3457999998654
No 239
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=16 Score=41.97 Aligned_cols=208 Identities=14% Similarity=0.140 Sum_probs=132.3
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCC
Q 040749 408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDG 487 (643)
Q Consensus 408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~ 487 (643)
-|..+|.+........|+.-+.++-....+. ...+|.+|+-..+.+.+++...---|..-+..+.+-.. --
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LS 109 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LS 109 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----ee
Confidence 4677888776666666666555544333331 33578888888888999988665555555443333221 24
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhc
Q 040749 488 IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQ 566 (643)
Q Consensus 488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~ 566 (643)
|..+-+-|++.++-++..|+++|..+= .-++..=++-++-+...+..+.++..|+.++-.|-+ .++.+.+
T Consensus 110 IntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q--- 180 (968)
T KOG1060|consen 110 INTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ--- 180 (968)
T ss_pred HHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH---
Confidence 677777888999999988888877542 222222222233344456788888888888877754 5555543
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.+..+-.+|.+.+|.+--.|+.+.-.+|-.. ...+ .+-...|+.++..-++=.|..+..+|..-.|+
T Consensus 181 --L~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~ 247 (968)
T KOG1060|consen 181 --LEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH 247 (968)
T ss_pred --HHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence 3456667888899999999999998888642 2222 23466677777666666666665555544443
No 240
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.49 E-value=19 Score=42.90 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
...+..|++.|++.+..++..|++-+..++...| + .+++ .+|...+.++... +...-..|+.+|+.|+...--..
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 3567778888888899999999999999998877 2 2222 2566666666543 35556688888888875221111
Q ss_pred HHHhcCChHHHHHHhcC--------CCHHHHHHHHHHHHhccccccchhhhhccCChHHHH-----HHhccCChhhHHHH
Q 040749 440 LIAQQGAIPAIIEILQS--------GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV-----DLLQNGTIRGKKDA 506 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~--------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-----~lL~~~~~~~~~~A 506 (643)
.. -..++|.|+.-|.- ...-+|..|+.+.|.++...+... . .+.+..|. ..+-+....+++.|
T Consensus 416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~--l-~p~l~~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD--L-KPVLQSLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh--h-hHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence 00 01245555554421 123578888888888864322110 0 11222222 22335567788888
Q ss_pred HHHHHHhccCCcch----H---------------------H-HHH-cCChHHHHHHhcc-----CChhhHHHHHHHHHHH
Q 040749 507 VTALFNLSLNQANK----A---------------------R-AID-AGIVLPLMNLLEE-----RNLGMVDEALSILLLL 554 (643)
Q Consensus 507 ~~aL~nLs~~~~n~----~---------------------~-lv~-~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L 554 (643)
..|+........|. . . +.+ .|...++++.|.. =+..+++.+..+|.+|
T Consensus 492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L 571 (1133)
T KOG1943|consen 492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL 571 (1133)
T ss_pred HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 88887654332222 1 0 111 4556666665533 2678899999999998
Q ss_pred hCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 040749 555 ATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL 593 (643)
Q Consensus 555 a~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 593 (643)
+... ........++.++....+++...+.-+..+..
T Consensus 572 s~~~---pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ 607 (1133)
T KOG1943|consen 572 SLTE---PKYLADYVLPPLLDSTLSKDASMRHGVFLAAG 607 (1133)
T ss_pred HHhh---HHhhcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence 7643 23334567777877777777666555444433
No 241
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=90.04 E-value=18 Score=40.21 Aligned_cols=113 Identities=22% Similarity=0.191 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749 361 KEEIVSLVEQLSSSK----LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~----~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~ 436 (643)
..+...+++.+.++. .-....-++.+..+.+.|+..+..+. |.|-.-|++.-..++-.++.++..++...-
T Consensus 222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv 296 (898)
T COG5240 222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV 296 (898)
T ss_pred HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence 345566677666543 11122344555566667777666553 667677777667777888888888775331
Q ss_pred hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchh
Q 040749 437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI 480 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~ 480 (643)
.-. +. ...+..|-.+|++...-.|-.|.++|-.|+.....+.
T Consensus 297 ~~~-~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv 338 (898)
T COG5240 297 GSQ-FV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV 338 (898)
T ss_pred CHH-HH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence 111 11 2345666677788888889999999999987654443
No 242
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.00 E-value=7.2 Score=43.83 Aligned_cols=166 Identities=17% Similarity=0.182 Sum_probs=104.8
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHH---hcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhc
Q 040749 368 VEQLSSSKLEVQKEAVRKIRLLSKENPENRILIA---DCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQ 444 (643)
Q Consensus 368 v~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~---~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~ 444 (643)
+..+-.-+++++.=|+..||.+.++...+-..+- .+..+..++..+. .++.-+.-++++|.|+-.++.++..+...
T Consensus 550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~ 628 (745)
T KOG0301|consen 550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR 628 (745)
T ss_pred HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3334445678888999999999987665544333 2335666666665 56777889999999999998888877643
Q ss_pred --CChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhccC-----ChhhHHHHHHHHHHhcc
Q 040749 445 --GAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQNG-----TIRGKKDAVTALFNLSL 515 (643)
Q Consensus 445 --g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~aL~nLs~ 515 (643)
-.+.+++..=...+..++...+...+|+|.. ..+-. .+..+.|..++... +.+....++.||.+|+.
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t 704 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT 704 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence 1222222222222345555555555565521 22211 35555555554422 34567778889999999
Q ss_pred CCcchHHHHHcCChHHHHHHhcc
Q 040749 516 NQANKARAIDAGIVLPLMNLLEE 538 (643)
Q Consensus 516 ~~~n~~~lv~~G~v~~Lv~lL~~ 538 (643)
.+.+..++...--+..+++-+.+
T Consensus 705 ~~~~~~~~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 705 VDASVIQLAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccHHHHHHHHhcCHHHHHHHHHH
Confidence 88888887776667777777655
No 243
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.98 E-value=26 Score=41.35 Aligned_cols=227 Identities=17% Similarity=0.182 Sum_probs=126.0
Q ss_pred hHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC----CCC----hHHHHHHHH
Q 040749 360 QKEEIVSLVEQLSSS-----KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP----YPD----SKILEHAVT 426 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~-----~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----~~d----~~~~~~a~~ 426 (643)
+.+++..++..+.+. ..+.-...++.|+..+ .-+.||..+.+.|+++.|+..|. .+. ..+-+..+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 457788888888752 2333344555555565 45899999999999999988774 333 455555555
Q ss_pred HHHHhcCCcc---hHH--HHHhc--------CChHHHHHHhcCC----CHHHHHHHHHHHHhccccccchhhhhccCChH
Q 040749 427 AVLNLSIDES---NKR--LIAQQ--------GAIPAIIEILQSG----STEARENSAAALFSLSMLDENKITIGLSDGIP 489 (643)
Q Consensus 427 ~L~nLs~~~~---~k~--~i~~~--------g~i~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~ 489 (643)
++..+..... ... ..... .-+..+++.+.+. ++.+....+.+|-.|+..+..+ +.
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~--------m~ 265 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK--------MD 265 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------HH
Confidence 5544432111 100 00111 1256666666543 5778888889999988755443 33
Q ss_pred HHHHHhcc-------C---ChhhHHHHHHHHHHhcc----CC---cchHHHHHcCChHHHHHHhccC--------Chhh-
Q 040749 490 PLVDLLQN-------G---TIRGKKDAVTALFNLSL----NQ---ANKARAIDAGIVLPLMNLLEER--------NLGM- 543 (643)
Q Consensus 490 ~Lv~lL~~-------~---~~~~~~~A~~aL~nLs~----~~---~n~~~lv~~G~v~~Lv~lL~~~--------~~~~- 543 (643)
.|++.++. + +... ...+.....++. +. .-+..+++.|++...+++|... ++++
T Consensus 266 ~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk 344 (802)
T PF13764_consen 266 ALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK 344 (802)
T ss_pred HHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence 33333321 1 1111 122344444432 11 1256688999999999888652 1222
Q ss_pred -------HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhc
Q 040749 544 -------VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLELGA 597 (643)
Q Consensus 544 -------~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~ 597 (643)
...++.+|.-||......+.+....+++ ++..|... +..+-..|=.+|-.|+.
T Consensus 345 ~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 345 EFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 3457788888877544444445555663 33444322 23344445555555555
No 244
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.94 E-value=5.8 Score=42.67 Aligned_cols=211 Identities=14% Similarity=0.138 Sum_probs=124.7
Q ss_pred HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHh--cCCcchHHH--------HHhcCChHHH
Q 040749 381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNL--SIDESNKRL--------IAQQGAIPAI 450 (643)
Q Consensus 381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nL--s~~~~~k~~--------i~~~g~i~~L 450 (643)
.|+..|-.+....+..-..+.+.+++..++..|+.+-....+. ....+- ...++.+.. ....+.++.|
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~l 80 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSL 80 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHHHH
Confidence 4566666666666667777888999999999886531111110 000000 000111111 1123333333
Q ss_pred HHHhcCCCHHHHHHHHHHHHhccc-cccch---hhhhc-cCChHHHHHHhccCC---hhhHHHHHHHHHHhccCCcc-hH
Q 040749 451 IEILQSGSTEARENSAAALFSLSM-LDENK---ITIGL-SDGIPPLVDLLQNGT---IRGKKDAVTALFNLSLNQAN-KA 521 (643)
Q Consensus 451 v~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k---~~i~~-~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n-~~ 521 (643)
++.+. .+.. ..... ..+.+ ......|...+++.. ..+-..|+..+..+..+++. -.
T Consensus 81 Lk~l~---------------~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~ 145 (379)
T PF06025_consen 81 LKFLS---------------HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS 145 (379)
T ss_pred HHHHH---------------HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence 33332 1111 11111 12233 333455555566543 45667788888888776555 45
Q ss_pred HHHHcCChHHHHHHhc-c---CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChH--H--HHHH---HH
Q 040749 522 RAIDAGIVLPLMNLLE-E---RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPK--N--KECA---TA 590 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~-~---~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~--~--~e~A---~~ 590 (643)
.+.++|+++.+++.+. . ++.++....-.+|..||-+..|.+.+.+.+.+..+++++.+.... . ++.| -.
T Consensus 146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~ 225 (379)
T PF06025_consen 146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGN 225 (379)
T ss_pred HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHH
Confidence 5778999999999998 4 566777777788999999999999999999999999998753211 1 1222 23
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 040749 591 VLLELGANNSSFILAALQ 608 (643)
Q Consensus 591 ~L~~L~~~~~~~~~~~~~ 608 (643)
.+-.|.++.|..+..+++
T Consensus 226 ~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 226 SFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHccCHHHHHHHHH
Confidence 356678888876666544
No 245
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.78 E-value=8.6 Score=40.56 Aligned_cols=156 Identities=17% Similarity=0.107 Sum_probs=117.0
Q ss_pred hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC-cchH-HH---HHcCChHHHHHHhcc-CChhhHHHHHHHHHHHh
Q 040749 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ-ANKA-RA---IDAGIVLPLMNLLEE-RNLGMVDEALSILLLLA 555 (643)
Q Consensus 482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~-~l---v~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La 555 (643)
+...+.+..|+..|..-+-+.+++++....++.... +++. .. +....-..|..++.. .++++.-.+-.+|...+
T Consensus 72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 345688999999999999999999999999987643 2222 12 222223333333433 56788888889999999
Q ss_pred CChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHHHHhhcCCHHHHHHHHH
Q 040749 556 THPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYG---VYEHLIQLTEGGTSRAQRKANA 632 (643)
Q Consensus 556 ~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~ 632 (643)
.++.....+.....+..+.+.+...+=.+-..|...+..+-...+..+...+..+ .+.....++.+++--+|+++..
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk 231 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK 231 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence 9988888888888899999999988888888999999987777777766666533 5677888999999999999999
Q ss_pred HHHHH
Q 040749 633 LLQLI 637 (643)
Q Consensus 633 lL~~L 637 (643)
+|..+
T Consensus 232 LL~el 236 (335)
T PF08569_consen 232 LLGEL 236 (335)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
No 246
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=89.71 E-value=2.6 Score=42.40 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHhcC
Q 040749 379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQS 456 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~ 456 (643)
...|+..|.-++--+|..|..+.+..++..|+.+|. ..++.++..++.+|..+-. ++.|...+-+.+|+..++.++++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~ 187 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS 187 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence 445667777777778999999999999999999995 4578899999998877655 67888888899999999999987
Q ss_pred C--CHHHHHHHHHHHHh
Q 040749 457 G--STEARENSAAALFS 471 (643)
Q Consensus 457 ~--~~e~~~~Aa~~L~~ 471 (643)
. +.+++-.+...|+-
T Consensus 188 ~~~~~~~r~K~~EFL~f 204 (257)
T PF08045_consen 188 KSTDRELRLKCIEFLYF 204 (257)
T ss_pred ccccHHHhHHHHHHHHH
Confidence 5 46777777776653
No 247
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.70 E-value=6.2 Score=45.27 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=148.1
Q ss_pred cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHH-HhcCCcchHHHHHhcCChHHHHHHhcCCC-HHHHHHHHHHH
Q 040749 392 ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVL-NLSIDESNKRLIAQQGAIPAIIEILQSGS-TEARENSAAAL 469 (643)
Q Consensus 392 ~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~-nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L 469 (643)
....-|...++.|+...|+++.....+...-++..+|. .++. .+.. ....++++...+.+.. .--...++-++
T Consensus 492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~---~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER---SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc---hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 34555667778899999999887777777777777776 1111 1110 1234444444443322 11233567788
Q ss_pred Hhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH-HHH-cCChHHHHHHhccCChhhHHH
Q 040749 470 FSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR-AID-AGIVLPLMNLLEERNLGMVDE 546 (643)
Q Consensus 470 ~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~-lv~-~G~v~~Lv~lL~~~~~~~~~~ 546 (643)
.||++.+ ..|..|...-+++.+-.++-..++..+..++..+.||..++---.+ +++ ...++.....+...+....-+
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 8887654 4566677666666666667777888999999999999877665444 333 334455555554444444555
Q ss_pred HHHHHHHHhCChhh-HHHhhc-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCH
Q 040749 547 ALSILLLLATHPEG-RHKIGQ-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTS 624 (643)
Q Consensus 547 Al~~L~~La~~~~~-~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~ 624 (643)
+++++..+....++ ...+.+ ......++.++.+.++.++...+.+.+++.....+....+.....++.+..+..-.-.
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a 726 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRA 726 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Confidence 55666645443222 221222 3567778888999999999999998888777666667777777777777765554333
Q ss_pred HHHHHHHHHHH
Q 040749 625 RAQRKANALLQ 635 (643)
Q Consensus 625 ~~k~~A~~lL~ 635 (643)
..++.|...|.
T Consensus 727 ~~~~~~~~~l~ 737 (748)
T KOG4151|consen 727 PKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhHHH
Confidence 33444444443
No 248
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=89.18 E-value=7 Score=40.57 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=109.0
Q ss_pred HHHHHH-HHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-Cc-chHH
Q 040749 363 EIVSLV-EQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DE-SNKR 439 (643)
Q Consensus 363 ~i~~Lv-~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~-~~k~ 439 (643)
.+..+| ..+.+.++.+|..|+++|+..+--+.+.- ...++.+...+..++..++..|+.++..+.. +. ....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence 344444 67788899999999999998885554221 1146677777777799999999999988754 21 1111
Q ss_pred -------HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC----ChhhHHHHHH
Q 040749 440 -------LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG----TIRGKKDAVT 508 (643)
Q Consensus 440 -------~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~A~~ 508 (643)
.......++.+.+.|.+.+++++..|+..++.|-..+.... .+..+..|+-+--+. +.+.+..-..
T Consensus 102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~ 178 (298)
T PF12719_consen 102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV 178 (298)
T ss_pred chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence 12234567788888888899999999999999865433322 134445554443322 3344444444
Q ss_pred HHHHhccCCcchHHHHHcCChHHHHHHhcc
Q 040749 509 ALFNLSLNQANKARAIDAGIVLPLMNLLEE 538 (643)
Q Consensus 509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~ 538 (643)
.+-..+..+......+....++.+-.+...
T Consensus 179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 179 FFPVYASSSPENQERLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence 444566666655666667777777777654
No 249
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.18 E-value=6.2 Score=47.24 Aligned_cols=229 Identities=14% Similarity=0.131 Sum_probs=132.0
Q ss_pred cHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc----ccchh
Q 040749 406 IPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML----DENKI 480 (643)
Q Consensus 406 i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~----~~~k~ 480 (643)
++.+...+++ .....+.+|+..|..||..-..-..+ .-++|-++.++.....++|..|..+|..+... +..-.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 4444444443 24566788999999998743322222 34789999999999999999999998876422 22223
Q ss_pred hhhccCChHHHHHHhccCC-hhhHHHHHHHHHHhcc------------------CCcch-----------HHHHHcCChH
Q 040749 481 TIGLSDGIPPLVDLLQNGT-IRGKKDAVTALFNLSL------------------NQANK-----------ARAIDAGIVL 530 (643)
Q Consensus 481 ~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~------------------~~~n~-----------~~lv~~G~v~ 530 (643)
.|.-.-.+|.|-.++.+.+ ..++..=+..|..|+. +..|- ...+-.++-+
T Consensus 502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~ 581 (1431)
T KOG1240|consen 502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQ 581 (1431)
T ss_pred hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHH
Confidence 3444567788888887733 3333222222222210 11111 0111122333
Q ss_pred HHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 040749 531 PLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYG 610 (643)
Q Consensus 531 ~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g 610 (643)
..+.+|.++++-++..-+..|.-||-.= ||+. .+.=.++.|+..|.+.+...|-.-..-+.-+|..-+. .-+++.
T Consensus 582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---rs~sey 656 (1431)
T KOG1240|consen 582 MVSSLLSDSPPIVKRALLESIIPLCVFF-GKEK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---RSVSEY 656 (1431)
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHHHHh-hhcc-cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---eeHHHH
Confidence 4445555555555555555566665310 1100 0112467777888777766665555555544432111 112456
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 611 VYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 611 ~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
.+|.|.+-+.++.+.+-.+|...|..|.+..
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 7888889999999999999999999888754
No 250
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.13 E-value=0.19 Score=55.11 Aligned_cols=59 Identities=29% Similarity=0.505 Sum_probs=40.6
Q ss_pred CCccccccCccccc----CceecCCCCccchHHHHHHHhcCCCCCCCcCcc-----cccCCCCccHHHHHHH
Q 040749 272 PHEFLCPITLEIMR----DPVIIASGQTFERESVQKWFDSNHRTCPKTRQT-----LAHLSIAPNYALKNLI 334 (643)
Q Consensus 272 ~~~f~CpIc~~~m~----dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~-----l~~~~l~pn~~l~~~i 334 (643)
-+-+.|+||...+. .||.+-||||.|+.|.+..++. +|| |... .+.++..-|+++-..+
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCccccchhcChhhcchhHHHHHhh
Confidence 34578999976664 7999999999999999998754 677 3211 1222344466665554
No 251
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.90 E-value=0.27 Score=49.92 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=34.3
Q ss_pred ccccCccccc--Ccee--cCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 276 LCPITLEIMR--DPVI--IASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 276 ~CpIc~~~m~--dPv~--~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
.||+|.+.|. |--. -+||...|+.|....-+.=+..||.|+...+...
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 3999999996 3322 3689887888865544433457999998887654
No 252
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=88.70 E-value=4.5 Score=47.46 Aligned_cols=183 Identities=14% Similarity=0.096 Sum_probs=115.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcC---CcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchHH
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCG---AIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g---~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
.+.+-..+.+.+|..+.+|+..+.....+.. .....+ .+..++.... ..+..+...|+..|.-++..-....
T Consensus 255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~ 330 (815)
T KOG1820|consen 255 TKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF 330 (815)
T ss_pred ChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence 4456667778899999999999988874433 222233 3333444332 3356666777777777775221111
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CC-
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQ- 517 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~- 517 (643)
.=...+.++.+++-+......++..+..++-..+.. -.....++.+..+++++++..+......+.-... .+
T Consensus 331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 111356788888888877666666655555444321 1124567888888999999888776555544332 22
Q ss_pred cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 518 ~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
.....-.-.++++.++.+..+.+.+++..|+.++..+..
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence 222222335677888888888899999999888877643
No 253
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.63 E-value=0.23 Score=51.31 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=36.0
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+.|..-.|-||.+-..+.+.+||||+.|..-..++ ...||.|++.+.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKH----LPQCPVCRQRIR 347 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHHHhh----CCCCchhHHHHH
Confidence 45566779999999999999999999883333332 346999998765
No 254
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=88.58 E-value=23 Score=35.25 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=84.2
Q ss_pred cHHHHH-hCCCCChHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh
Q 040749 406 IPPLVQ-LLPYPDSKILEHAVTAVLNLSIDE-SNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG 483 (643)
Q Consensus 406 i~~Lv~-lL~~~d~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 483 (643)
+|.|+. +-+..+++.+...+.+|..++.++ .+... ++..|..+...+..+.+..+...+..+-..++- ..
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r---~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDR---HF 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch---HH
Confidence 344555 445568999999999999999877 33333 345555666666666655555665555332111 00
Q ss_pred ccCChHHHHHH--hc------cC--ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh-ccCChhhHHHHHHHHH
Q 040749 484 LSDGIPPLVDL--LQ------NG--TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL-EERNLGMVDEALSILL 552 (643)
Q Consensus 484 ~~g~i~~Lv~l--L~------~~--~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL-~~~~~~~~~~Al~~L~ 552 (643)
+.+..++.. ++ ++ ..+.....+.++..+|...+++. ...++.+..+| .+.++.++..++..|.
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~ 147 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALA 147 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 333433333 11 11 23444555667888887666622 23567788888 6777888889999999
Q ss_pred HHh
Q 040749 553 LLA 555 (643)
Q Consensus 553 ~La 555 (643)
.||
T Consensus 148 ~Lc 150 (234)
T PF12530_consen 148 PLC 150 (234)
T ss_pred HHH
Confidence 999
No 255
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=88.39 E-value=0.12 Score=57.86 Aligned_cols=48 Identities=27% Similarity=0.466 Sum_probs=39.3
Q ss_pred CccccccCcccccCcee---cCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 273 HEFLCPITLEIMRDPVI---IASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~---~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
..-.||+|..-+.|-.+ .+|+|-||..||..|..-. .+||.|+..+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence 45689999999988755 3699999999999999854 489999877654
No 256
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=88.29 E-value=11 Score=43.88 Aligned_cols=264 Identities=16% Similarity=0.113 Sum_probs=151.7
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA 442 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~ 442 (643)
++.....++...++.+..++.....++.. +...+..+.....+|.+-.+....+..++...+....+++---. +..-
T Consensus 357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t- 434 (759)
T KOG0211|consen 357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT- 434 (759)
T ss_pred hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-
Confidence 55556666666666666666655555532 22334555556667888777777777777776666666543111 1111
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749 443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
-.-.+|.++..++...++++.+..+.+..+-...+ .-......-.+|.++.+-....++++......+.-++.... .
T Consensus 435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence 13356666777777778888887776655433222 22233345567788877766678888888888877765433 2
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH---HHHHhcC
Q 040749 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV---LLELGAN 598 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~---L~~L~~~ 598 (643)
.+.+.-..+.+..-+.+....+.+.|...+..++..-. .+.- ....++.++.+...++...|...+-. |..++..
T Consensus 513 ~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ 590 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ 590 (759)
T ss_pred HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc
Confidence 33333333333333444455677888877777765321 1111 12345555555544444444443333 3333321
Q ss_pred CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 599 NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 599 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
.+.....++.+..+..+..+.+|-+++..|..+..
T Consensus 591 ------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 591 ------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred ------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 12223467778888888888888888887776543
No 257
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.11 E-value=0.52 Score=48.93 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=49.3
Q ss_pred cccccCccccc------CceecCCCCccchHHHHHHHhcCCCCCCCcCcccc--c---CCCCccHHHHHHHHHH
Q 040749 275 FLCPITLEIMR------DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA--H---LSIAPNYALKNLILQW 337 (643)
Q Consensus 275 f~CpIc~~~m~------dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~--~---~~l~pn~~l~~~i~~~ 337 (643)
+.|-||.+.+. -|-++.|||++|..|+.+.+..+...||+|+.+.. . ..+..|+.+...++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 56888887776 47788899999999999988877778999999843 2 2356788887777664
No 258
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.84 E-value=0.25 Score=49.24 Aligned_cols=42 Identities=26% Similarity=0.481 Sum_probs=33.3
Q ss_pred ccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+..|.||++..+|-|.++|||. .|-.|=.+. ..||+|++.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHHH
Confidence 6889999999999999999995 366665432 26999987543
No 259
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=86.61 E-value=27 Score=40.85 Aligned_cols=224 Identities=16% Similarity=0.087 Sum_probs=135.4
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHH--hcCChHH
Q 040749 373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIA--QQGAIPA 449 (643)
Q Consensus 373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~--~~g~i~~ 449 (643)
+..|..-.+|...+...+...+.+...+.. .+...++.+..+ .+.++..|+.++...++ ...+. ..+.++.
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence 344555556777777666443333322221 223334444333 44556666666666552 11111 3567777
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc--cCChhhHHHHHHHHHHhccCCcchHHHHHcC
Q 040749 450 IIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ--NGTIRGKKDAVTALFNLSLNQANKARAIDAG 527 (643)
Q Consensus 450 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G 527 (643)
|+++....+.++......+|+.....+.......++-..|..+.++- +.++.+...+-.++..|+....+...+.+ -
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~ 613 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-R 613 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-H
Confidence 88887777788888888888888766655555556667787777753 34666666666666666654333333332 3
Q ss_pred ChHHHHHHhccCC----hhhHHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHH-HhcCChHHHHHHHHHHHHHhcCCH
Q 040749 528 IVLPLMNLLEERN----LGMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEY-IREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 528 ~v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~l-L~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.+|.++..+..+. ..+..-|+.+|..+.++ ++--..+.. -++|.+.+. +++++..+-.++..+|..+.+.+.
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 6899999998754 66777788888866552 222222222 345666664 456778889999999998887766
Q ss_pred HHHH
Q 040749 601 SFIL 604 (643)
Q Consensus 601 ~~~~ 604 (643)
+...
T Consensus 693 eq~~ 696 (1005)
T KOG2274|consen 693 EQLL 696 (1005)
T ss_pred HHHH
Confidence 5433
No 260
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=86.15 E-value=1.3 Score=28.76 Aligned_cols=30 Identities=13% Similarity=0.396 Sum_probs=25.7
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 569 FIETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 569 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
.+|.+++++.+.++++|..|+.+|..++..
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 368899999999999999999999998753
No 261
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=86.05 E-value=8.4 Score=42.04 Aligned_cols=186 Identities=18% Similarity=0.188 Sum_probs=110.4
Q ss_pred HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 363 EIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 363 ~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
.+..++.... +.++..+..++..+..+...-+..- .+ ...+..+...+ ...+...+..++.++.-++ |..
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL 261 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL 261 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence 4555555544 3346667777777777774311111 00 11233333333 2334444455555444333 222
Q ss_pred HH-----hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccc--h------hhhhc----cCChHHHHHHhccCChhh
Q 040749 441 IA-----QQGAIPAIIEILQSGSTEARENSAAALFSLSML-DEN--K------ITIGL----SDGIPPLVDLLQNGTIRG 502 (643)
Q Consensus 441 i~-----~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~--k------~~i~~----~g~i~~Lv~lL~~~~~~~ 502 (643)
++ ....+..++.+|.+ +++...|+..+.-|..+ ++. + ..+.. ...+|.|++..+..+...
T Consensus 262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~ 339 (415)
T PF12460_consen 262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI 339 (415)
T ss_pred HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence 22 12245667777766 56778888888877655 322 1 11112 345677777777766668
Q ss_pred HHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749 503 KKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLATHP 558 (643)
Q Consensus 503 ~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 558 (643)
+..-+.||.++..+-+....+-+ ..++|.|++-|..++.+++..++.+|..+....
T Consensus 340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 88889999998876554433333 557888899998888889999999999887754
No 262
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.75 E-value=2.2 Score=41.47 Aligned_cols=97 Identities=21% Similarity=0.215 Sum_probs=76.1
Q ss_pred hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-----hHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHH
Q 040749 541 LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-----PKNKECATAVLLELGANNSSFI-LAALQYGVYEH 614 (643)
Q Consensus 541 ~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~~~~~~-~~~~~~g~i~~ 614 (643)
..-+..|+.+|..++++|+.+..+.++.+---+...|...+ ...|-.+++++..|..++...+ ..++...++|.
T Consensus 114 snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 114 SNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 34467789999999999999999999876555566665322 3457889999999998876654 55667889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHH
Q 040749 615 LIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 615 L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
+++++..|++--|--|..++..+
T Consensus 194 cLrIme~gSElSktvaifI~qki 216 (315)
T COG5209 194 CLRIMELGSELSKTVAIFIFQKI 216 (315)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 99999999998888887777654
No 263
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.69 E-value=0.59 Score=48.49 Aligned_cols=52 Identities=27% Similarity=0.468 Sum_probs=45.0
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 326 (643)
...|.+++-.+.|||.+..|..|+...|-.|+.. +.+=|.+++++...++++
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk 91 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK 91 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence 4578999999999999999999999999999986 446788888888777665
No 264
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=85.34 E-value=0.52 Score=47.59 Aligned_cols=43 Identities=26% Similarity=0.505 Sum_probs=35.8
Q ss_pred ccccccCccccc----CceecCCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749 274 EFLCPITLEIMR----DPVIIASGQTFERESVQKWFDSNHRTCPKTRQ 317 (643)
Q Consensus 274 ~f~CpIc~~~m~----dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~ 317 (643)
++.||||.+.+. +|...+|||+.-..|.+.....+ .+||.|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 356999998775 67778999998888888777777 89999977
No 265
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=84.50 E-value=15 Score=40.05 Aligned_cols=129 Identities=14% Similarity=0.107 Sum_probs=83.8
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhccC-C--------cchHHHHHc----CChHHHHHHhccCChhhHHHHHHHHH
Q 040749 486 DGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-Q--------ANKARAIDA----GIVLPLMNLLEERNLGMVDEALSILL 552 (643)
Q Consensus 486 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~--------~n~~~lv~~----G~v~~Lv~lL~~~~~~~~~~Al~~L~ 552 (643)
..+..|+.++.+ +.....|+.++.-|... + .+...+.+. -++|.|++.+...+...+...+.+|.
T Consensus 271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs 348 (415)
T PF12460_consen 271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS 348 (415)
T ss_pred HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence 346667777766 55667777777776654 1 122223332 35677777777666667888888898
Q ss_pred HHhCChhhHHHhhc-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Q 040749 553 LLATHPEGRHKIGQ-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617 (643)
Q Consensus 553 ~La~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ 617 (643)
++..+-......-+ ...+|.+++-|...++..+..++.+|..+....++....=+ ..+++.|++
T Consensus 349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~ 413 (415)
T PF12460_consen 349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLK 413 (415)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence 88775432222222 35789999999888899999999999999887765443311 234555544
No 266
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.41 E-value=8.1 Score=44.71 Aligned_cols=174 Identities=16% Similarity=0.059 Sum_probs=104.5
Q ss_pred CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh
Q 040749 457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL 536 (643)
Q Consensus 457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL 536 (643)
+-+.++..+...|..+....+.+..+...+++....+.|++.+.-+.-+|...+..||.. -...++|.|.+.-
T Consensus 739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y 811 (982)
T KOG4653|consen 739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY 811 (982)
T ss_pred CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence 335567788888888877666666677789999999999999988888898888888752 2234567777643
Q ss_pred cc----CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Q 040749 537 EE----RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGV 611 (643)
Q Consensus 537 ~~----~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~ 611 (643)
.+ ...+.+-..=.++.+++. ..+...... +-.+...+..+++.+...|..++++|.++|..........+ ..+
T Consensus 812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev 889 (982)
T KOG4653|consen 812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HEV 889 (982)
T ss_pred HhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HHH
Confidence 32 112222222244444432 111111111 12344555555544455688899999999865432222211 112
Q ss_pred HHHHHHHh-hcCCHHHHHHHHHHHHHHHh
Q 040749 612 YEHLIQLT-EGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 612 i~~L~~ll-~~g~~~~k~~A~~lL~~L~~ 639 (643)
...++.+. .+|+.-+|+.|+-++..+-+
T Consensus 890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 890 LQLILSLETTDGSVLVRRAAVHLLAELLN 918 (982)
T ss_pred HHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence 33334333 36688889999888887654
No 267
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.37 E-value=4.5 Score=45.30 Aligned_cols=128 Identities=17% Similarity=0.272 Sum_probs=84.9
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhc
Q 040749 489 PPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQ 566 (643)
Q Consensus 489 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~ 566 (643)
..++...+ |+...+..|+..|..... .++-... ++..++.+..+.+..++..|+..|..+|.+ ++...
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~---- 95 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS---- 95 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH----
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh----
Confidence 34444433 678888888888876654 3444433 466788999889999999999999999985 44433
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh---cCCHHHHHHHHHHHH
Q 040749 567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE---GGTSRAQRKANALLQ 635 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~---~g~~~~k~~A~~lL~ 635 (643)
.++..|+++|.+.++......-.+|..|...++. +.+..|+..+. ++++.+|+++...|+
T Consensus 96 -kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 96 -KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 3566888999988888888888888888887764 35555665554 788888999887664
No 268
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.36 E-value=5.6 Score=47.94 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=38.0
Q ss_pred CCccccccCccccc-CceecCCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749 272 PHEFLCPITLEIMR-DPVIIASGQTFERESVQKWFDSNHRTCPKTRQ 317 (643)
Q Consensus 272 ~~~f~CpIc~~~m~-dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~ 317 (643)
-..+.|+||+++|+ ---+.-|||-||..|+.-|+... ..||.|..
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-SRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-ccCcchhh
Confidence 34569999999999 55677899999999999999864 47999963
No 269
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.18 E-value=23 Score=40.63 Aligned_cols=137 Identities=18% Similarity=0.236 Sum_probs=80.4
Q ss_pred CChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-----------CChhhHHHHHHHHHHh
Q 040749 445 GAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-----------GTIRGKKDAVTALFNL 513 (643)
Q Consensus 445 g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~aL~nL 513 (643)
|.+-.++++|.+++-+++..+....+.|..+ .-+.-++.+|+. .+...+..-..++...
T Consensus 317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvss----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c 386 (948)
T KOG1058|consen 317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSS----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC 386 (948)
T ss_pred HHHHHHHHHcCcccccHHHHHHHHHHhhhhh----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence 3444556677777888888888887777653 234445554431 1223345556666665
Q ss_pred ccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHH
Q 040749 514 SLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAV 591 (643)
Q Consensus 514 s~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~ 591 (643)
+..-+. +.+.+|+.|++++.+.++......+..+...-. .|.-|.. .+..+++-+.. .+....+.|+|+
T Consensus 387 av~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi 457 (948)
T KOG1058|consen 387 AVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWI 457 (948)
T ss_pred hhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHH
Confidence 542221 345678999999988776555444444443322 3433433 33444444432 456778889999
Q ss_pred HHHHhcCCH
Q 040749 592 LLELGANNS 600 (643)
Q Consensus 592 L~~L~~~~~ 600 (643)
+..-|....
T Consensus 458 ~GeYce~~~ 466 (948)
T KOG1058|consen 458 LGEYCEGLS 466 (948)
T ss_pred HHHHHhhhH
Confidence 988887655
No 270
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.05 E-value=0.93 Score=40.08 Aligned_cols=51 Identities=14% Similarity=0.257 Sum_probs=42.0
Q ss_pred CccccccCcccccCceec----CCCCccchHHHHHHHhc--CCCCCCCcCcccccCC
Q 040749 273 HEFLCPITLEIMRDPVII----ASGQTFERESVQKWFDS--NHRTCPKTRQTLAHLS 323 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~----~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~ 323 (643)
.-+.|-||.|.-.|+..+ .||...|..|-...|+. -++.||.|+....+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 347899999999998776 38999999999998883 5678999988776543
No 271
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.93 E-value=37 Score=38.20 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-chHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SNKR 439 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~k~ 439 (643)
......++..-+ ++...+.-|+..|....++-|+.... +|..++.+...+|..+|..|+..|-.++.+. +...
T Consensus 22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~ 95 (556)
T PF05918_consen 22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS 95 (556)
T ss_dssp HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence 345555555554 46778888888888888888876544 4668889999999999999999999999863 3444
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc---cCChhhHHHHHHHHH
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ---NGTIRGKKDAVTALF 511 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~ 511 (643)
.+ .+.|+++|.+.++.-...+-.+|..|-..+ ..+.+..+...+. +++..+++.++..|.
T Consensus 96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 44 567888888776544444444444442211 1244555555554 566667777776664
No 272
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=83.84 E-value=1.2 Score=38.34 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=27.6
Q ss_pred CCCCCccccccCcccccCcee--cCCCCccchHHHH
Q 040749 269 LVIPHEFLCPITLEIMRDPVI--IASGQTFERESVQ 302 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~--~~cg~ty~r~~I~ 302 (643)
..+.++-.|++|+..+.+++. .||||.|...|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456777889999999987654 3999999999875
No 273
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.71 E-value=46 Score=38.35 Aligned_cols=103 Identities=23% Similarity=0.262 Sum_probs=54.0
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAI 524 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv 524 (643)
.|..+..+|.+.++.++..|+.+|..||.++..-+. +...+++++.. .+-.++.-.+--|..+. .+... +
T Consensus 244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~-i 314 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEK-I 314 (948)
T ss_pred HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHH-H
Confidence 455666666666666666666666666654332111 12333444322 22233332222233222 11111 1
Q ss_pred HcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749 525 DAGIVLPLMNLLEERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 525 ~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 557 (643)
=.|.+--++.+|..++-+++..++.+...|+++
T Consensus 315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvss 347 (948)
T KOG1058|consen 315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS 347 (948)
T ss_pred HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence 134455566777778888999999888888764
No 274
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=83.39 E-value=2.3 Score=27.61 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=25.9
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 611 VYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 611 ~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
++|.+++++.+.++++|..|...|..+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999988764
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.09 E-value=27 Score=36.75 Aligned_cols=44 Identities=20% Similarity=0.496 Sum_probs=35.8
Q ss_pred ccccccCccccc-Cc---eecCCCCccchHHHHHHHhc-CCCCCCCcCc
Q 040749 274 EFLCPITLEIMR-DP---VIIASGQTFERESVQKWFDS-NHRTCPKTRQ 317 (643)
Q Consensus 274 ~f~CpIc~~~m~-dP---v~~~cg~ty~r~~I~~~~~~-~~~~cP~~~~ 317 (643)
++.|-.|++.+- .| -.+||.|.|.-+|++.++.. +..+||.|++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 578999999874 33 34699999999999999974 5678999973
No 276
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.03 E-value=0.82 Score=38.36 Aligned_cols=27 Identities=15% Similarity=0.636 Sum_probs=23.5
Q ss_pred CCCCccchHHHHHHHhcCCCCCCCcCcc
Q 040749 291 ASGQTFERESVQKWFDSNHRTCPKTRQT 318 (643)
Q Consensus 291 ~cg~ty~r~~I~~~~~~~~~~cP~~~~~ 318 (643)
.|.|.|.-.||.+|++..+ .||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlktr~-vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-VCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-cCCCcCcc
Confidence 5889999999999999865 79999764
No 277
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.75 E-value=30 Score=40.90 Aligned_cols=134 Identities=19% Similarity=0.164 Sum_probs=85.3
Q ss_pred cCCcHHHHHhCCC--------CChHHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 040749 403 CGAIPPLVQLLPY--------PDSKILEHAVTAVLNLSI----DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALF 470 (643)
Q Consensus 403 ~g~i~~Lv~lL~~--------~d~~~~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~ 470 (643)
.|.++.++..|.+ .++.-.+-|+.++++|+. ....+..+ +.-.++.+.-.++++..-.|..|++++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLS 487 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence 3567777777762 255666788888888873 22333333 4445666666778888889999999999
Q ss_pred hccccccchhhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCCcchHHHHHc---CChHHHHHHhcc
Q 040749 471 SLSMLDENKITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQANKARAIDA---GIVLPLMNLLEE 538 (643)
Q Consensus 471 ~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~---G~v~~Lv~lL~~ 538 (643)
..+..+-. ..-.-..++....+.|. +....++..|+-||..+-++.+....-+++ +.++.|+.+.+.
T Consensus 488 ~~~~~df~-d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 488 QFSSIDFK-DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE 558 (1010)
T ss_pred HHHhccCC-ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence 99854321 11112345666777776 667789999999999887665544332333 333444444444
No 278
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=31 Score=39.51 Aligned_cols=157 Identities=17% Similarity=0.099 Sum_probs=91.9
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHH-hccCChhhHHHHHHHHHHhccCCcchHHHH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDL-LQNGTIRGKKDAVTALFNLSLNQANKARAI 524 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~lv 524 (643)
+=+.|-+++.+.++-.|...+-++..--. --++.++|..|+.. ..+.+.++++.|..+|.-++..+++
T Consensus 520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~------GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~----- 588 (929)
T KOG2062|consen 520 ADPLIKELLRDKDPILRYGGMYTLALAYV------GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE----- 588 (929)
T ss_pred hHHHHHHHhcCCchhhhhhhHHHHHHHHh------ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence 33344446666667666655544332100 01235678888887 5677899999999999987765554
Q ss_pred HcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCHHH
Q 040749 525 DAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL-GANNSSF 602 (643)
Q Consensus 525 ~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L-~~~~~~~ 602 (643)
.++..+++|.+ -++-++--++.+|..-|.....++ ++..|-.++.+...-+|.-|+-++..+ +.+++..
T Consensus 589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 34566777765 456666667777776665433332 344444555555556777777777654 3444433
Q ss_pred HHHHHHCCcHHHHHHHhhcCCH
Q 040749 603 ILAALQYGVYEHLIQLTEGGTS 624 (643)
Q Consensus 603 ~~~~~~~g~i~~L~~ll~~g~~ 624 (643)
+..+ .+..+.+.+++.+..+
T Consensus 660 ~pkv--~~frk~l~kvI~dKhE 679 (929)
T KOG2062|consen 660 CPKV--NGFRKQLEKVINDKHE 679 (929)
T ss_pred CchH--HHHHHHHHHHhhhhhh
Confidence 3322 2344555555555443
No 279
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=82.62 E-value=10 Score=35.36 Aligned_cols=143 Identities=18% Similarity=0.147 Sum_probs=82.9
Q ss_pred ChHHHHHHhcc--CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chh-hHH
Q 040749 487 GIPPLVDLLQN--GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPE-GRH 562 (643)
Q Consensus 487 ~i~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~-~~~ 562 (643)
.+..++..|.. .++.++..|..++..+- +..+....+ -+-..+-..+.+.+.+-...++.++..|=. .++ +..
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 45556666543 56778888888877662 222222111 111222223333334455667777776644 344 344
Q ss_pred HhhcCCcHHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHH-HHHHHHHHH
Q 040749 563 KIGQLSFIETLVEYIR--EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSR-AQRKANALL 634 (643)
Q Consensus 563 ~i~~~g~i~~Lv~lL~--~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~-~k~~A~~lL 634 (643)
.+...|+++.++.++. ..+...+..++.+|..=|. +. .+...+...+++.|..+..++ ++. +|..|.-.|
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 5566899999999999 5666777777777755554 43 344444455799999999655 455 566555444
No 280
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=82.59 E-value=9 Score=30.66 Aligned_cols=66 Identities=14% Similarity=0.121 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 040749 544 VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSSFILAALQYG 610 (643)
Q Consensus 544 ~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g 610 (643)
...|++++.++++++.|...+.+.++++.++++.... ....|--|..+|..+++ ..+.+..+.+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 4678999999999999999888889999999999854 47789999999987765 444444444444
No 281
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.45 E-value=13 Score=45.80 Aligned_cols=258 Identities=16% Similarity=0.134 Sum_probs=124.7
Q ss_pred HHHHHHHhcCCCHHHHHHHH-HHHH---HhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHH---hcCCcc
Q 040749 364 IVSLVEQLSSSKLEVQKEAV-RKIR---LLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN---LSIDES 436 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~-~~L~---~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~n---Ls~~~~ 436 (643)
...+...+.++++..|..++ |-|. .+++ .++..- ........+..+|...|+-+|..|..-|+- |+ +..
T Consensus 820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~-~~~v~l--~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg-d~~ 895 (1702)
T KOG0915|consen 820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQ-QPEVVL--MLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG-DSS 895 (1702)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-Cchhhh--ccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC-Cch
Confidence 44555666788888776443 3222 2221 122111 111223677788888777777777655432 22 222
Q ss_pred hHHHHHhcCChHHHHHHhcCCCH-------HH---------------HHHHHHHHHhccccccchhhhhccCChHHHHHH
Q 040749 437 NKRLIAQQGAIPAIIEILQSGST-------EA---------------RENSAAALFSLSMLDENKITIGLSDGIPPLVDL 494 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~~~-------e~---------------~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l 494 (643)
.|..+ +..|++-|..|.. ++ ....-.=|++|++ .++.+..|-.+.+|
T Consensus 896 ~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~L 964 (1702)
T KOG0915|consen 896 LKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQL 964 (1702)
T ss_pred hHHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHH
Confidence 23333 3334443332211 00 1111112333322 12334445555555
Q ss_pred hccC-ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHH
Q 040749 495 LQNG-TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETL 573 (643)
Q Consensus 495 L~~~-~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~L 573 (643)
-++. .+..++-|+--+..|+.....+.+=--...||.|...=.+++..++.....+=..|..++.....-.-...+.-|
T Consensus 965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen 965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 5443 345555555545545433322211111335677777666788777766555555555543221111112455555
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhcCCHHH--HHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 574 VEYIREGTPKNKECATAVLLELGANNSSF--ILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 574 v~lL~~~s~~~~e~A~~~L~~L~~~~~~~--~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
+.-+.+..-++|+.++.+|..|-.+.+.. ...+ ...-..+++.+.+--+-+|+.|-.+.+.+.
T Consensus 1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666789999999999998765421 1111 123334445555444555555544444443
No 282
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=82.39 E-value=11 Score=42.67 Aligned_cols=254 Identities=12% Similarity=0.114 Sum_probs=146.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcC
Q 040749 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQG 445 (643)
Q Consensus 366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g 445 (643)
.++..|.-.+.+.+.+-...|..- .+..-..++..-.+|.|+..+..++ .-.+.+..+..+...-+... ...+
T Consensus 258 ~fLeel~lks~~eK~~Ff~~L~~~---l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~ 330 (690)
T KOG1243|consen 258 LFLEELRLKSVEEKQKFFSGLIDR---LDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVR 330 (690)
T ss_pred HHHHhcccCcHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccc
Confidence 344445555666666555555442 2334445666667888888887766 23444555555544211111 4677
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID 525 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~ 525 (643)
.+|.|+++++..+..+|..-+.-+-.. .+..-..+.+...+|.+..-+.+.++..+...+.++..|+..=.-+ .+.
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln 406 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLN 406 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhc
Confidence 899999999998877775433222211 1223345667788999999999999999999988888776311111 111
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc-HHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHH
Q 040749 526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF-IETLVEYIREGTPKNKECATAVLLELGANNSSFIL 604 (643)
Q Consensus 526 ~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~-i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~ 604 (643)
...+..+..+=.+.+..++....-+|..++.+-.. ....++ +....+-+++.-+..|..++.+|+..+..-+..-.
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~v 483 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEV 483 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhh
Confidence 11222222222234556666666666666554211 112222 33344445555566788888888777654332111
Q ss_pred HHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749 605 AALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636 (643)
Q Consensus 605 ~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 636 (643)
...+++.+.-+..+.+.-++..|-..++-
T Consensus 484 ---a~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 484 ---ANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred ---hhhccccccccccCcccchhhHHHHHHHH
Confidence 23467777777777777777777666553
No 283
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=82.31 E-value=13 Score=34.03 Aligned_cols=74 Identities=15% Similarity=0.119 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~ 433 (643)
.+.++..+.+.|.++++.+|..|+..|..+.++ .......++..+++..|++++. ..++.++..++..+.+.+.
T Consensus 39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999976 4557778888899999999887 4578899999999988874
No 284
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=81.49 E-value=15 Score=37.39 Aligned_cols=169 Identities=15% Similarity=0.148 Sum_probs=100.1
Q ss_pred HHHHHHHHHHhcCCcchHHHHHhcC--ChHHHHHHhcC----CCHHHHHHHHHHHHhccccccchhhhhcc-C-ChHHHH
Q 040749 421 LEHAVTAVLNLSIDESNKRLIAQQG--AIPAIIEILQS----GSTEARENSAAALFSLSMLDENKITIGLS-D-GIPPLV 492 (643)
Q Consensus 421 ~~~a~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g-~i~~Lv 492 (643)
+--++..+.-+..++..-..+...+ ....+..++.. ..+-.+.-+++++.|+-.....+..+... + .+...+
T Consensus 80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~ 159 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL 159 (268)
T ss_dssp -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence 4445555655555665555554222 24444554433 35778888999999999888887777653 3 444444
Q ss_pred HHhccC----ChhhHHHHHHHHHHhccCCc-ch-HHHHHcCChHHHHHHhc-c-CChhhHHHHHHHHHHHhCChhhHHHh
Q 040749 493 DLLQNG----TIRGKKDAVTALFNLSLNQA-NK-ARAIDAGIVLPLMNLLE-E-RNLGMVDEALSILLLLATHPEGRHKI 564 (643)
Q Consensus 493 ~lL~~~----~~~~~~~A~~aL~nLs~~~~-n~-~~lv~~G~v~~Lv~lL~-~-~~~~~~~~Al~~L~~La~~~~~~~~i 564 (643)
..+... +..++..+++.++|++..-. ++ ..-....++..+++.+. . .+++..-.++.+|++|...+......
T Consensus 160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~ 239 (268)
T PF08324_consen 160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQL 239 (268)
T ss_dssp HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence 444443 56778888999999974211 11 11111123455566332 2 68889999999999999876666665
Q ss_pred hcC-CcHHHHHHHHh-cCChHHHHHHH
Q 040749 565 GQL-SFIETLVEYIR-EGTPKNKECAT 589 (643)
Q Consensus 565 ~~~-g~i~~Lv~lL~-~~s~~~~e~A~ 589 (643)
... |+-..+...-. ...++.++.+.
T Consensus 240 ~~~l~~~~~~~~~~~~~~e~ri~~v~~ 266 (268)
T PF08324_consen 240 AKSLDVKSVLSKKANKSKEPRIKEVAA 266 (268)
T ss_dssp CCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHcChHHHHHHHHhcccchHHHHHhc
Confidence 553 44444333333 34566666554
No 285
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.31 E-value=0.53 Score=45.58 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=37.2
Q ss_pred CccccccCccc-ccCce--e--cC-CCCccchHHHHHHHhcCCCCCC--CcCccccc
Q 040749 273 HEFLCPITLEI-MRDPV--I--IA-SGQTFERESVQKWFDSNHRTCP--KTRQTLAH 321 (643)
Q Consensus 273 ~~f~CpIc~~~-m~dPv--~--~~-cg~ty~r~~I~~~~~~~~~~cP--~~~~~l~~ 321 (643)
.+-.||+|..- +-+|- + -| |-|..|-+|..+.|..|...|| -|+..|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK 65 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK 65 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence 35689999753 34552 2 25 9999999999999999999999 67665543
No 286
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.66 E-value=1.3 Score=50.66 Aligned_cols=44 Identities=16% Similarity=0.355 Sum_probs=35.9
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQ 317 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~ 317 (643)
.+-..-.|..|.-.+.=|++- .|||.|.+.|.+ .+...||.|..
T Consensus 836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred ceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 344446899999999999775 899999999998 45678999965
No 287
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=80.62 E-value=2.3 Score=45.77 Aligned_cols=178 Identities=17% Similarity=0.051 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhcCCcchHH-HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-----cc---chhhhhccCChHH
Q 040749 420 ILEHAVTAVLNLSIDESNKR-LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-----DE---NKITIGLSDGIPP 490 (643)
Q Consensus 420 ~~~~a~~~L~nLs~~~~~k~-~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-----~~---~k~~i~~~g~i~~ 490 (643)
++..|++++.-+..++..+. .+.-..+...++..|.+..-..++.++|++.+++.- +. ....+. .-.+..
T Consensus 407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~ 485 (728)
T KOG4535|consen 407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK 485 (728)
T ss_pred HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence 44556666665555665543 333456677777777776777899999999998731 11 111110 011222
Q ss_pred HHHHhc---cCChhhHHHHHHHHHHhccCCc----chHHHHHcCChHHHHHH-hccCChhhHHHHHHHHHHHhCChhhHH
Q 040749 491 LVDLLQ---NGTIRGKKDAVTALFNLSLNQA----NKARAIDAGIVLPLMNL-LEERNLGMVDEALSILLLLATHPEGRH 562 (643)
Q Consensus 491 Lv~lL~---~~~~~~~~~A~~aL~nLs~~~~----n~~~lv~~G~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~ 562 (643)
++.+-. ..+.+++.+|.++|.|+...-. -.-..+..|.+..+..- .......++.+|+.++.||-+++.-.-
T Consensus 486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l 565 (728)
T KOG4535|consen 486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL 565 (728)
T ss_pred HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence 222221 2356888899999999874211 01111122222222221 122456789999999999999875432
Q ss_pred Hh--hcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcC
Q 040749 563 KI--GQLSFIETLVEYIRE-GTPKNKECATAVLLELGAN 598 (643)
Q Consensus 563 ~i--~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~ 598 (643)
+= ....+++.|..++.+ .+=++|.+|+++|..-...
T Consensus 566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r 604 (728)
T KOG4535|consen 566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR 604 (728)
T ss_pred cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence 21 223457788888865 4567889999998776543
No 288
>PRK14707 hypothetical protein; Provisional
Probab=80.56 E-value=92 Score=40.35 Aligned_cols=256 Identities=18% Similarity=0.127 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH
Q 040749 375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEI 453 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l 453 (643)
+.+.+..+......++ .++..|..+ ...+|..+++-++ -++.....+|+..|...-.++.....-++...+...+..
T Consensus 178 ~~~c~~aa~~la~~~~-~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~ 255 (2710)
T PRK14707 178 NPDCQAVAPRFAALVA-SDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNA 255 (2710)
T ss_pred CchHHHHHHHHHHHhc-CChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHH
Confidence 3333333333333333 333444333 3334555555444 345444555666665544444443333355566666666
Q ss_pred hcC-CCHHHHHHHHHHHH-hccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHH-hccCCcchHHHHHcCChH
Q 040749 454 LQS-GSTEARENSAAALF-SLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN-LSLNQANKARAIDAGIVL 530 (643)
Q Consensus 454 L~~-~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~lv~~G~v~ 530 (643)
|.. .+.....+|+..|. .|+.+...+..+...++-..|-.+-+-.+..+...|+..|.. |...++-+ +-.+.-.+.
T Consensus 256 lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~-~~~~~~~~~ 334 (2710)
T PRK14707 256 LSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELC-KALNARGLS 334 (2710)
T ss_pred HhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhh-hccchHHHH
Confidence 643 33334444444444 455444444444333333333333344556666666666653 44433333 334444455
Q ss_pred HHHHHhcc-CChhh-HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040749 531 PLMNLLEE-RNLGM-VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGANNSSFILAAL 607 (643)
Q Consensus 531 ~Lv~lL~~-~~~~~-~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~ 607 (643)
.+++-|+. ++..+ ...|..+-..|+.+++.++.+-- -++..++.-+.. .+......|+..|..=..++++....+-
T Consensus 335 ~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~ 413 (2710)
T PRK14707 335 TALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD 413 (2710)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc
Confidence 55666654 44444 44555555677778777776643 345555555553 3344555666666554456666666665
Q ss_pred HCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 040749 608 QYGVYEHLIQLTEGGTSRAQRKANALL 634 (643)
Q Consensus 608 ~~g~i~~L~~ll~~g~~~~k~~A~~lL 634 (643)
-.|+-..|-.+.+=.+..+-..|...|
T Consensus 414 ~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 414 PQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred hhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 566666666666655555555555444
No 289
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.30 E-value=7.1 Score=46.66 Aligned_cols=139 Identities=24% Similarity=0.203 Sum_probs=102.3
Q ss_pred CcHHHHHhCCC----CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccch
Q 040749 405 AIPPLVQLLPY----PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENK 479 (643)
Q Consensus 405 ~i~~Lv~lL~~----~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k 479 (643)
+.|.++...+. .|+++|..|.-+|+.+..-+..- -...+|.++.++. ++++.+|.|+..+++.|+..-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ces~l~llftimeksp~p~IRsN~VvalgDlav~fpn- 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN- 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence 56777777643 47899999999998876432221 1235788999887 77899999999999888753222
Q ss_pred hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 480 ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 480 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
+. ...-+.|...|++.++.+++.|...|.+|-.++ |++ .|.++.+...|.++++.+.+-|=..+..|+.
T Consensus 995 --li-e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 --LI-EPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred --cc-chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 11 223466777788999999999999999997643 344 6889999999999998888887766666654
No 290
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=80.30 E-value=72 Score=33.60 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=111.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCchhHHHHHh-cC-CcHHHHHhCCCC-----C--------hHHHHHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSK-ENPENRILIAD-CG-AIPPLVQLLPYP-----D--------SKILEHAVT 426 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~-~~~~~r~~i~~-~g-~i~~Lv~lL~~~-----d--------~~~~~~a~~ 426 (643)
..+.+.+.|++.....+..+++-|..++. .+......+.. -+ -.+.|.+++... + +.+|.+.+.
T Consensus 57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 47788888998888888888999998887 55455444444 33 234555665421 1 278888888
Q ss_pred HHHHhcC--CcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHh-ccccc----cchhhhhccCChHHHHHHhccC
Q 040749 427 AVLNLSI--DESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFS-LSMLD----ENKITIGLSDGIPPLVDLLQNG 498 (643)
Q Consensus 427 ~L~nLs~--~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~----~~k~~i~~~g~i~~Lv~lL~~~ 498 (643)
.+..+.. ++..+..+. ..+.+..+.+-|..+++++......+|.. +..++ ..|..+.+..++..|+.+....
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~ 216 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD 216 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence 7777765 334466666 55678888888888889999988888884 43332 3456677788899999987766
Q ss_pred Ch----hhHHHHHHHHHHhccCCcch
Q 040749 499 TI----RGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 499 ~~----~~~~~A~~aL~nLs~~~~n~ 520 (643)
.+ .+...+-..|..+|.++.+-
T Consensus 217 ~~~~~~~~~~~vh~fL~~lcT~p~~G 242 (330)
T PF11707_consen 217 GEDEKSSVADLVHEFLLALCTDPKHG 242 (330)
T ss_pred CCcccchHHHHHHHHHHHHhcCCCcc
Confidence 55 77777888888888765543
No 291
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=79.94 E-value=20 Score=41.78 Aligned_cols=194 Identities=11% Similarity=0.069 Sum_probs=123.2
Q ss_pred HHHHhcC-CcchHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChH--HHHHHhccC-Chh
Q 040749 427 AVLNLSI-DESNKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIP--PLVDLLQNG-TIR 501 (643)
Q Consensus 427 ~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~--~Lv~lL~~~-~~~ 501 (643)
+|+++.. .+++...+.+.|++..+...++.- ..+.+..+...+.+++...+++........+. .+-.++..- +.+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 6777776 456788888999999999999854 56788899999999998776655544322222 222344333 337
Q ss_pred hHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHH-hCChhhHHHhhcCCcHHH-HHHHHhc
Q 040749 502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL-ATHPEGRHKIGQLSFIET-LVEYIRE 579 (643)
Q Consensus 502 ~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~~~~~~~i~~~g~i~~-Lv~lL~~ 579 (643)
.-+.|+..|..+..+.+. ....+. .+.+...+... ...+.....+.....+.. +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~~---------------r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECVF---------------RNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Cccccc---------------hHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 778888888888765444 111111 11222222211 111111122222223333 5555653
Q ss_pred -CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 040749 580 -GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLIS 638 (643)
Q Consensus 580 -~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~ 638 (643)
..+...-.|++++.+++..+++++..+.+.|+++.+..+.... ...++..|..++....
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 4577889999999999999999999999999999998766433 5566677766665543
No 292
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=79.89 E-value=32 Score=40.68 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=116.3
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHHhccCCcchHHHH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLNQANKARAI 524 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~~n~~~lv 524 (643)
.-+.+-.-+.+..+.-|..|+..+........-....+..|.+-.++... .+.+..+...|+..|..|+..-..-.+=.
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~ 333 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKY 333 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHH
Confidence 33444445556667777777776665543332001111233344444433 34466777788888887775322222223
Q ss_pred HcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHH
Q 040749 525 DAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-SFI 603 (643)
Q Consensus 525 ~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~ 603 (643)
..++.+.+++-+.+....+++.++.++-..+..- .-....+.+...+.+++|..+..+...+.......+ ...
T Consensus 334 ~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 3567888888888888888888888877665511 112456778888999999999998888776655433 222
Q ss_pred HHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 604 LAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 604 ~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
..---.++++.++....+.+..+|..|...+-.+-
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 22222457888888888888999988877766543
No 293
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=79.83 E-value=21 Score=38.42 Aligned_cols=82 Identities=12% Similarity=0.235 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CC---ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHH
Q 040749 376 LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YP---DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451 (643)
Q Consensus 376 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~---d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv 451 (643)
+.+--.|+..+..+..+.|..-..+.++|.++.++..+. .+ +.++....-.+|..+|.+..+.+.+.+.+.++.+.
T Consensus 123 ~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f 202 (379)
T PF06025_consen 123 PSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLF 202 (379)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHH
Confidence 445567888888888888999999999999999999887 43 56666666778888999999999999999999999
Q ss_pred HHhcCC
Q 040749 452 EILQSG 457 (643)
Q Consensus 452 ~lL~~~ 457 (643)
+++.+.
T Consensus 203 ~if~s~ 208 (379)
T PF06025_consen 203 EIFTSP 208 (379)
T ss_pred HHhCCH
Confidence 999765
No 294
>PRK14707 hypothetical protein; Provisional
Probab=79.82 E-value=1.2e+02 Score=39.33 Aligned_cols=257 Identities=14% Similarity=0.076 Sum_probs=129.8
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC-CCCChHHHHHHHHHHHH-hcCCcchH
Q 040749 362 EEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAVTAVLN-LSIDESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~d~~~~~~a~~~L~n-Ls~~~~~k 438 (643)
..|..++.-++. ++......|+..|.....+....+..+ +...+...++.| +-++..+..+++..|.. ++.+..-+
T Consensus 205 q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~ 283 (2710)
T PRK14707 205 QGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLR 283 (2710)
T ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHH
Confidence 345555555542 333344556666655554443333333 333444445544 44566666666666554 44333334
Q ss_pred HHHHhcCChHHHHHHhcC-CC-HHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHH-Hhc
Q 040749 439 RLIAQQGAIPAIIEILQS-GS-TEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALF-NLS 514 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~-~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~-nLs 514 (643)
..+ ++..+...+.-|+. .+ ...+..|..+-..|..+.+.+..+-..+ +..+++-| +-.+......|+.+|. -|+
T Consensus 284 ~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~-~~~~LNalsKWpd~~~C~~Aa~~LA~rl~ 361 (2710)
T PRK14707 284 KAL-DPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARG-LSTALNALSKWPDNPVCAAAVSALAERLV 361 (2710)
T ss_pred Hhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHH-HHHHHHHhhcCCCchhHHHHHHHHHHHhc
Confidence 433 33344444444432 23 3344444444445666555554443333 33333433 3345455555555555 455
Q ss_pred cCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHH-HHHhCChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHH
Q 040749 515 LNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSIL-LLLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAV 591 (643)
Q Consensus 515 ~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L-~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~ 591 (643)
..++-+..+ +.-.+...+.-|+. ++......|...| ..|..+++-++.+-.. .|...+.-|.. .+..+...|+..
T Consensus 362 ~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q-~van~lnalsKWPd~~~C~~aa~~ 439 (2710)
T PRK14707 362 ADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQ-GVSNALNALAKWPDLPICGQAVSA 439 (2710)
T ss_pred cCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchh-hHHHHHHHhhcCCcchhHHHHHHH
Confidence 555544443 33445555555554 5555544444444 5666677777777554 44444454543 455666677777
Q ss_pred HHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC
Q 040749 592 LLELGANNSSFILAALQYGVYEHLIQLTEGGT 623 (643)
Q Consensus 592 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~ 623 (643)
|..-..++.+.++.+--.++...|-.+.+=.+
T Consensus 440 lA~~la~d~~l~~~~~p~~va~~LnalSKWPd 471 (2710)
T PRK14707 440 LAGRLAHDTELCKALDPINVTQALDALSKWPD 471 (2710)
T ss_pred HHHHHhccHHHHhhcChHHHHHHHHHhhcCCC
Confidence 76655666666655543445555544554443
No 295
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=79.80 E-value=68 Score=31.93 Aligned_cols=136 Identities=18% Similarity=0.058 Sum_probs=81.4
Q ss_pred HHHHHHh-cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHh
Q 040749 365 VSLVEQL-SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ 443 (643)
Q Consensus 365 ~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~ 443 (643)
+.|+..+ +..+++.+...++.|..++.++..+... ++..|..+...+....+.-+...+..+...++---
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 3444433 3568889999999999999765222211 23455555566666665566666666654322111
Q ss_pred cCChHHHHHH-----h---cCC--CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHH
Q 040749 444 QGAIPAIIEI-----L---QSG--STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFN 512 (643)
Q Consensus 444 ~g~i~~Lv~l-----L---~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~n 512 (643)
+.+..++.. . .++ ..+.....++.+..++....+ .....++.+...| ++.++..+..|+.+|..
T Consensus 74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~ 148 (234)
T PF12530_consen 74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAP 148 (234)
T ss_pred -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 233333333 1 111 244555556677777655444 2235678888888 77788888999999999
Q ss_pred hc
Q 040749 513 LS 514 (643)
Q Consensus 513 Ls 514 (643)
|+
T Consensus 149 Lc 150 (234)
T PF12530_consen 149 LC 150 (234)
T ss_pred HH
Confidence 98
No 296
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=79.59 E-value=1.3 Score=44.84 Aligned_cols=48 Identities=23% Similarity=0.539 Sum_probs=37.7
Q ss_pred CCCCccccccCcccccC---ceecCCCCccchHHHHHHHhcCC--CCCCCcCc
Q 040749 270 VIPHEFLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNH--RTCPKTRQ 317 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~--~~cP~~~~ 317 (643)
....-|.||+..+.-.| ||.++|||..-...+.+.-+.|. +.||-|..
T Consensus 332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 34556999999988764 89999999999999988766543 45998843
No 297
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.22 E-value=9.4 Score=34.41 Aligned_cols=74 Identities=24% Similarity=0.246 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCCcHHHHHhCCC---CChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE-NRILIADCGAIPPLVQLLPY---PDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~---~d~~~~~~a~~~L~nLs~ 433 (643)
...+++.|-..|+++++.+|..|+..|-.+.++... ....+....++..|++++.. .+..++..++..+.+.+.
T Consensus 35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999987655 66777777788889998875 478899999999988874
No 298
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.19 E-value=10 Score=38.87 Aligned_cols=143 Identities=20% Similarity=0.220 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
....+...+..|.+.+|+....++..|+.|+.-+++...... ...|..+++-+++....+-..|+.++..+...-.+.
T Consensus 86 p~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~- 163 (334)
T KOG2933|consen 86 PEAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS- 163 (334)
T ss_pred HHHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH-
Confidence 346788899999999999999999999999866654443333 236778888899988889899999998887532222
Q ss_pred HHHhcCChHHHHHHh-cC---CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749 440 LIAQQGAIPAIIEIL-QS---GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL-~~---~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 513 (643)
|.. .++.++..| .. .+.-+++.|-.+|-.+...-.. .-+++.|+..+++.+++++..++.+..+.
T Consensus 164 -i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 -IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred -HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 111 344444433 22 2356777777777766432111 23567777778888888887776554443
No 299
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.12 E-value=7 Score=34.66 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=54.4
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH--HCCcHHHHHHHhh-----cC---CHHHHHHHHHHHHHHH
Q 040749 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL--QYGVYEHLIQLTE-----GG---TSRAQRKANALLQLIS 638 (643)
Q Consensus 569 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~--~~g~i~~L~~ll~-----~g---~~~~k~~A~~lL~~L~ 638 (643)
++..|.+-|.+.++.++..|+.+|..+|..++......+ +...|..+.+.-. .| +..+|..|..++..+.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 566778888888899999999999999988765544433 3456777777665 33 4588999999999886
Q ss_pred hh
Q 040749 639 KS 640 (643)
Q Consensus 639 ~~ 640 (643)
..
T Consensus 119 ~~ 120 (122)
T cd03572 119 SY 120 (122)
T ss_pred cc
Confidence 54
No 300
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=78.94 E-value=5.8 Score=39.26 Aligned_cols=79 Identities=25% Similarity=0.262 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHhccccccchhhhhccCCh-------HHHHHHhc-cCChhhHHHHHHHHHHhccCCcchHHH--HHcCCh
Q 040749 460 EARENSAAALFSLSMLDENKITIGLSDGI-------PPLVDLLQ-NGTIRGKKDAVTALFNLSLNQANKARA--IDAGIV 529 (643)
Q Consensus 460 e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i-------~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~l--v~~G~v 529 (643)
.-+..|..+|+.|+..+.|-..|...+-. ..|++++. .++.-.++-|+..|.||+..++...+. .+.+.|
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 45789999999999999998888775544 34445553 457788999999999999887776554 458999
Q ss_pred HHHHHHhcc
Q 040749 530 LPLMNLLEE 538 (643)
Q Consensus 530 ~~Lv~lL~~ 538 (643)
..|+.++.+
T Consensus 219 ~~Li~FiE~ 227 (257)
T PF12031_consen 219 SHLIAFIED 227 (257)
T ss_pred HHHHHHHHH
Confidence 999999965
No 301
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=78.74 E-value=1.2 Score=43.13 Aligned_cols=55 Identities=22% Similarity=0.277 Sum_probs=42.4
Q ss_pred ccccccCcccccCceec-CCCCccchHHHHHHHhc-CCCCCCC--cCcccccCCCCccH
Q 040749 274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDS-NHRTCPK--TRQTLAHLSIAPNY 328 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~-~~~~cP~--~~~~l~~~~l~pn~ 328 (643)
+.+|||+.....-|.+- .|.|.|++..|++.++. -.+.||. |.+......++-.+
T Consensus 189 ~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~ 247 (275)
T COG5627 189 SNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDH 247 (275)
T ss_pred cccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhH
Confidence 47999999999999875 79999999999999983 3456887 66666655555443
No 302
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=78.29 E-value=12 Score=33.84 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=57.9
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhc---CCHHHHHHHHHHHHHHHh
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEG---GTSRAQRKANALLQLISK 639 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~---g~~~~k~~A~~lL~~L~~ 639 (643)
.++..|-+-|.+++|.++..|+.+|-.+..+.+. ....+.....+..|+.++.+ .++.+|.++..++.....
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4677888889999999999999999999988765 44555555777778888875 378999999999987654
No 303
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=78.11 E-value=22 Score=32.04 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCCC-C-hHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPYP-D-SKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~-d-~~~~~~a~~~L~nLs~ 433 (643)
...+++.+-+.|.++++.+|..|+..|-.+.++ .......+....++..|+.+++.. + +.++..++..+.+.+.
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999987 456777888888999999988865 2 3488889888887764
No 304
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=77.85 E-value=2.8 Score=38.50 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=35.7
Q ss_pred CCccccccCcccccCceecCCCC-----ccchHHHHHHHhc-CCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQ-----TFERESVQKWFDS-NHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~~ 321 (643)
..+-.|-||.+-.. +..-||.. ...++|+++|+.. +...||.|+.+..-
T Consensus 6 ~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 34567999988854 44557653 2389999999994 56689999887654
No 305
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.85 E-value=86 Score=36.03 Aligned_cols=126 Identities=18% Similarity=0.092 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCC
Q 040749 420 ILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGT 499 (643)
Q Consensus 420 ~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~ 499 (643)
+...+++.+..+-..+..-. .-.|.+..+++-..+.+..+|..++.+|..++....-...-+-.+....+..-+.+..
T Consensus 62 Il~fla~fv~sl~q~d~e~D--lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Dre 139 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEED--LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDRE 139 (892)
T ss_pred HHHHHHHHHHhhhccCchhh--HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccC
Confidence 33444444444443222222 2356778888888888899999999999988752222222222455666777777888
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHH
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSIL 551 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L 551 (643)
+.++..|+.||..+-..+.+- +-.++..+..++.. ++++++..|+..+
T Consensus 140 p~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 140 PNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred chHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 899999999999886432221 11245566777754 7778777765433
No 306
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.82 E-value=5.7 Score=33.40 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~ 433 (643)
.......+..|.++.+.+|-.++..|+.+..... ...+-..+.+..+...|+.+|+-+--+|+..|..|+.
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 3467788889999999999999999999996655 1222224567778889999999999999999988885
No 307
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=77.71 E-value=2.2 Score=44.04 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=45.4
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQ 336 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 336 (643)
...+-+.||+|.+.|.-|..= .-||.-|..|=.+- ...||.|+.++.+ +.++++...++.
T Consensus 44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~----~~~CP~Cr~~~g~---~R~~amEkV~e~ 104 (299)
T KOG3002|consen 44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV----SNKCPTCRLPIGN---IRCRAMEKVAEA 104 (299)
T ss_pred cchhhccCchhhccCcccceecCCCcEehhhhhhhh----cccCCcccccccc---HHHHHHHHHHHh
Confidence 456678999999999999764 57999999987542 3469999998884 255666666554
No 308
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=77.69 E-value=26 Score=31.92 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCC------CChHHHHHHHHHHHHhc
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPY------PDSKILEHAVTAVLNLS 432 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~------~d~~~~~~a~~~L~nLs 432 (643)
.+.++..+.+.|.++++.++..|+..|-.+.+.- ...+..++..+++.-|+++++. .+..++...+..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 36 PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999998743 5577888888999999999863 46889999998888776
Q ss_pred C
Q 040749 433 I 433 (643)
Q Consensus 433 ~ 433 (643)
.
T Consensus 116 ~ 116 (139)
T cd03567 116 L 116 (139)
T ss_pred H
Confidence 4
No 309
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=77.68 E-value=16 Score=37.17 Aligned_cols=136 Identities=16% Similarity=0.092 Sum_probs=87.7
Q ss_pred CChhhHHHHHHHHHHhccCCcchHHHHHcC--ChHHHHHHhccC----ChhhHHHHHHHHHHHhCChh-hH-HHhhcCCc
Q 040749 498 GTIRGKKDAVTALFNLSLNQANKARAIDAG--IVLPLMNLLEER----NLGMVDEALSILLLLATHPE-GR-HKIGQLSF 569 (643)
Q Consensus 498 ~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G--~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~~~~-~~-~~i~~~g~ 569 (643)
.....+..+++++.|+-.++..+..+.+.. .+-..+.-+... +..++..+..++.|++..-- .+ ..=.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 356677889999999999999988877632 333333333332 57778888899999975211 11 00011123
Q ss_pred HHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh-hcCCHHHHHHHHHH
Q 040749 570 IETLVEYIRE--GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLT-EGGTSRAQRKANAL 633 (643)
Q Consensus 570 i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~l 633 (643)
+..+.+.+.. .+++..-.++.+|.+|+..++.....+...|+-..+.... ....+|+++.+..+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 4555553332 5788899999999999977766555554466666666555 44578888877653
No 310
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=77.26 E-value=8.8 Score=44.76 Aligned_cols=185 Identities=17% Similarity=0.219 Sum_probs=115.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch---------hHHHHHh---cCCcHHHHHhCCCCChHHHHHHHHHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE---------NRILIAD---CGAIPPLVQLLPYPDSKILEHAVTAVLN 430 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~---------~r~~i~~---~g~i~~Lv~lL~~~d~~~~~~a~~~L~n 430 (643)
....++..|+.+ +.-..|++.+..+.++++. +|....+ ...+|.|++.....+...+.+-+.+|.+
T Consensus 816 ia~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 816 IAEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 345566666652 2233444455544444332 2211111 2578999998886666666777777777
Q ss_pred hcCCcchHHHHH--hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCC---hhhHHH
Q 040749 431 LSIDESNKRLIA--QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGT---IRGKKD 505 (643)
Q Consensus 431 Ls~~~~~k~~i~--~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~---~~~~~~ 505 (643)
+-.+-+- ..+. -+..+|.|++.|.-.+..+|..+..++..+.....--..---.-.+|.++.+=++.+ ..++..
T Consensus 894 Vl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ 972 (1030)
T KOG1967|consen 894 VLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVRED 972 (1030)
T ss_pred HHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHH
Confidence 6653222 3332 256788999999988988888888877765422111000001235566666644433 578999
Q ss_pred HHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHH
Q 040749 506 AVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSI 550 (643)
Q Consensus 506 A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~ 550 (643)
|+.+|..|.. .+.+...--+..++..|.+.|.++..-++++|..+
T Consensus 973 ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 973 ALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred HHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999987 66666656667788889999988877778888754
No 311
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=77.25 E-value=87 Score=31.82 Aligned_cols=163 Identities=17% Similarity=0.154 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhcCC--------cchHHHHHhcCChHHHHHHhcCCC----HHHHHHHHHHHHhccccccchhhhhcc
Q 040749 418 SKILEHAVTAVLNLSID--------ESNKRLIAQQGAIPAIIEILQSGS----TEARENSAAALFSLSMLDENKITIGLS 485 (643)
Q Consensus 418 ~~~~~~a~~~L~nLs~~--------~~~k~~i~~~g~i~~Lv~lL~~~~----~e~~~~Aa~~L~~Ls~~~~~k~~i~~~ 485 (643)
+...+.++..|..|... ++++-.+.-.+.+|.++.-+..++ ......+|..|..++.... .
T Consensus 76 s~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~ 148 (262)
T PF14225_consen 76 SSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------L 148 (262)
T ss_pred CCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------C
Confidence 44556677777766542 223444444567788888777766 1344566777777763211 2
Q ss_pred CChHHHHHHhccCC----hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749 486 DGIPPLVDLLQNGT----IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR 561 (643)
Q Consensus 486 g~i~~Lv~lL~~~~----~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 561 (643)
..+..+......+. .+....++..|+.-.. ++. +...+..|+.+|..+.+.++...+.+|..+-.+.+.+
T Consensus 149 ~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~~-----~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 149 PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PDH-----EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-chh-----HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 23444444444332 2233344444442211 221 2234566888898888889999999999998766655
Q ss_pred HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
.. .....+..+.+++++ ..-..|+.+|-.+..
T Consensus 223 ~~-~~~dlispllrlL~t---~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 223 SP-HGADLISPLLRLLQT---DLWMEALEVLDEIVT 254 (262)
T ss_pred CC-cchHHHHHHHHHhCC---ccHHHHHHHHHHHHh
Confidence 44 344678999999975 345567777766544
No 312
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=77.22 E-value=26 Score=32.15 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~ 433 (643)
.+..+..+...|.+.++.+|..|+..|..+.++.. .....++...++..|++++.. .+..++..++..+..++.
T Consensus 35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999997654 466678888899999999987 688999999999988874
No 313
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=77.10 E-value=48 Score=38.79 Aligned_cols=191 Identities=18% Similarity=0.091 Sum_probs=118.3
Q ss_pred HHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHHhcCChH--HHHHHhcCCC-HH
Q 040749 385 KIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIP--AIIEILQSGS-TE 460 (643)
Q Consensus 385 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~--~Lv~lL~~~~-~e 460 (643)
.|.+....++++...+.+.|++..+...++.- ..+.+..++..+.|++...+++........+. .+-.++..-+ .+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 78888889999999999999999999999854 67789999999999998776655544322222 2223343333 47
Q ss_pred HHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHH-HhccCCcchHHHHHcCChHH-HHHHhcc
Q 040749 461 ARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF-NLSLNQANKARAIDAGIVLP-LMNLLEE 538 (643)
Q Consensus 461 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~-nLs~~~~n~~~lv~~G~v~~-Lv~lL~~ 538 (643)
.-.+|+.+|+.+..+.+. -...+ .+..+...+. ..........+++-...+.+ +..++..
T Consensus 574 rsY~~~siLa~ll~~~~~---~~~~~---------------~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~ 635 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEK---TTECV---------------FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL 635 (699)
T ss_pred HHHHHHHHHHHHHhCCCc---Ccccc---------------chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc
Confidence 778888888877654332 11111 1112222221 12223333333333333333 4455543
Q ss_pred -CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHH
Q 040749 539 -RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLL 593 (643)
Q Consensus 539 -~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~ 593 (643)
..++.+-.|++++.++.. ++++...+.+.|++..+.++-... ....++.+..++-
T Consensus 636 s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 636 SKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred cCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 567788899999999987 566777777778888776654322 3445555555543
No 314
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=76.77 E-value=2.4 Score=37.85 Aligned_cols=52 Identities=15% Similarity=0.361 Sum_probs=37.0
Q ss_pred ccccccCcccccC--cee-cCCC------CccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749 274 EFLCPITLEIMRD--PVI-IASG------QTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326 (643)
Q Consensus 274 ~f~CpIc~~~m~d--Pv~-~~cg------~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p 326 (643)
...|.||.+...+ -|+ ++|| +.||..|+++|-+. ....|.-+..--.-...|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~-~~rDPfnR~I~y~F~fPf 86 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE-RNRDPFNRNIKYWFNFPF 86 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh-ccCCCcccceEEEEeCCC
Confidence 4679999999987 554 5777 47999999999543 456888766544444443
No 315
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=76.63 E-value=92 Score=31.68 Aligned_cols=174 Identities=15% Similarity=0.152 Sum_probs=97.8
Q ss_pred CChHHHHHHhcCC--CHHHHHHHHHHHHhccccccc--------hhhhhccCChHHHHHHhccCC----hhhHHHHHHHH
Q 040749 445 GAIPAIIEILQSG--STEARENSAAALFSLSMLDEN--------KITIGLSDGIPPLVDLLQNGT----IRGKKDAVTAL 510 (643)
Q Consensus 445 g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~--------k~~i~~~g~i~~Lv~lL~~~~----~~~~~~A~~aL 510 (643)
|..+.+..++-.| +...-+.+..+|..|...+++ +-.+.-.+.+|.++.-+.+++ .......+..|
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L 139 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL 139 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 6677777766554 345566677777777654333 212222345566666666655 13445666777
Q ss_pred HHhccCCcchHHHHHcCChHHHHHHhcc----CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHH
Q 040749 511 FNLSLNQANKARAIDAGIVLPLMNLLEE----RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKE 586 (643)
Q Consensus 511 ~nLs~~~~n~~~lv~~G~v~~Lv~lL~~----~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e 586 (643)
..+|...+. ..+..++..+.. +..+....++..|..-.- |+ .+...+..++++|.++.+..|.
T Consensus 140 a~~a~~~~~-------~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~-P~-----~~~~~l~~Ll~lL~n~~~w~~~ 206 (262)
T PF14225_consen 140 AQVAEAQGL-------PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF-PD-----HEFQILTFLLGLLENGPPWLRR 206 (262)
T ss_pred HHHHHhCCC-------ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC-ch-----hHHHHHHHHHHHHhCCcHHHHH
Confidence 777732111 112222222222 233444455555443211 11 1234677889999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749 587 CATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636 (643)
Q Consensus 587 ~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 636 (643)
..+.+|..+-.+-+-... .....+.+|.++++..-- ..|..+|..
T Consensus 207 ~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~~---~eAL~VLd~ 251 (262)
T PF14225_consen 207 KTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDLW---MEALEVLDE 251 (262)
T ss_pred HHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCccH---HHHHHHHHH
Confidence 999999988765332211 445678899999865532 245555543
No 316
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.35 E-value=2.8 Score=44.26 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=27.4
Q ss_pred ccccccCcccccC---ceecCCCCccchHHHHHHHh
Q 040749 274 EFLCPITLEIMRD---PVIIASGQTFERESVQKWFD 306 (643)
Q Consensus 274 ~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~ 306 (643)
-|.|.||++-..- -+.+||+|.||+.|...++.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~ 219 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFT 219 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHH
Confidence 4889999987653 34579999999999999997
No 317
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.31 E-value=53 Score=37.45 Aligned_cols=202 Identities=18% Similarity=0.130 Sum_probs=102.2
Q ss_pred CcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH----HHh---cCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-c
Q 040749 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL----IAQ---QGAIPAIIEILQSGSTEARENSAAALFSLSML-D 476 (643)
Q Consensus 405 ~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~----i~~---~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~ 476 (643)
.+-.|+++|+.-+.+..+....-+.. .. ...+.. +.. ..++..+.+.+.++.... ..|+.++..+... .
T Consensus 312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~~ 388 (574)
T smart00638 312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTAR 388 (574)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhhh
Confidence 34456677766555544444444433 11 222322 222 346677777777764221 1223333332211 1
Q ss_pred cchhhhhccCChHHHHHHhccC----ChhhHHHHHHHHHHhc----cCCcchHHHHHcCChHHHHHHhcc----CChhhH
Q 040749 477 ENKITIGLSDGIPPLVDLLQNG----TIRGKKDAVTALFNLS----LNQANKARAIDAGIVLPLMNLLEE----RNLGMV 544 (643)
Q Consensus 477 ~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs----~~~~n~~~lv~~G~v~~Lv~lL~~----~~~~~~ 544 (643)
.. ....+..+..++.++ ....+..|..++.+|. .+.+.+...+-..+++.|...|.. .+..-+
T Consensus 389 ~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 463 (574)
T smart00638 389 YP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEI 463 (574)
T ss_pred cC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchhe
Confidence 11 124567777777653 3345555555555553 333332222333466666666643 333344
Q ss_pred HHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-c--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhc
Q 040749 545 DEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-E--GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG 621 (643)
Q Consensus 545 ~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~ 621 (643)
..++.+|.|+... ..+..+..++. . .++..|..|+++|..+....+.. +.+.|+.+..+
T Consensus 464 ~~~LkaLGN~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n 525 (574)
T smart00638 464 QLYLKALGNAGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLN 525 (574)
T ss_pred eeHHHhhhccCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcC
Confidence 5566777765431 34555555555 2 24678999999999887655543 33445555544
Q ss_pred C--CHHHHHHHHH
Q 040749 622 G--TSRAQRKANA 632 (643)
Q Consensus 622 g--~~~~k~~A~~ 632 (643)
. ++++|-.|.-
T Consensus 526 ~~e~~EvRiaA~~ 538 (574)
T smart00638 526 RAEPPEVRMAAVL 538 (574)
T ss_pred CCCChHHHHHHHH
Confidence 3 4455544443
No 318
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=76.16 E-value=68 Score=33.17 Aligned_cols=196 Identities=15% Similarity=0.179 Sum_probs=132.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-----cCCcHHHHHhCCCCC-hHHHHHHHHHHHHhcCC
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-----CGAIPPLVQLLPYPD-SKILEHAVTAVLNLSID 434 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-----~g~i~~Lv~lL~~~d-~~~~~~a~~~L~nLs~~ 434 (643)
.+....+++.|...+.+.+..++....++-+.....|...++ ...+..|+.- ..+ +++--++...|.....+
T Consensus 78 ~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~--~~~~~~iaL~cg~mlrEcirh 155 (342)
T KOG1566|consen 78 ADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG--YENTPEIALTCGNMLRECIRH 155 (342)
T ss_pred CCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh--hccchHHHHHHHHHHHHHHhh
Confidence 456788999999888888888888887777665555554433 2233334433 222 44444444455555555
Q ss_pred cchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc-hhhhhc--c-CChHH-HHHHhccCChhhHHHHHHH
Q 040749 435 ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN-KITIGL--S-DGIPP-LVDLLQNGTIRGKKDAVTA 509 (643)
Q Consensus 435 ~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~--~-g~i~~-Lv~lL~~~~~~~~~~A~~a 509 (643)
+.-...|....-+...-...+.++-++...|.++...+...... ...+.. . ...+. --.++++++--.+..+..+
T Consensus 156 e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kl 235 (342)
T KOG1566|consen 156 EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKL 235 (342)
T ss_pred HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHh
Confidence 55555555666666677777777767777777777766543311 111111 1 22233 5567788999999999999
Q ss_pred HHHhccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749 510 LFNLSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHP 558 (643)
Q Consensus 510 L~nLs~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 558 (643)
|..+-....|...|.. ...+..++.+|++++..++-+|..+.+....++
T Consensus 236 lg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 236 LGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 9999988888776654 467888999999999999999999999887754
No 319
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=74.99 E-value=9.3 Score=44.58 Aligned_cols=147 Identities=15% Similarity=0.212 Sum_probs=99.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-HH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-KR 439 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~ 439 (643)
..+|.+++...+.+...+..-+..|.+..++-|. ...+-+ ....|.|++.|+-+|..+|..++.++--+...... ..
T Consensus 867 ~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 4578888888866666677777778777754443 222222 34688899999999999988888877655432111 11
Q ss_pred HHHhcCChHHHHHHhcCCC---HHHHHHHHHHHHhccc-cccchhhhhccCChHHHHHHhccCChhhHHHHHHHH
Q 040749 440 LIAQQGAIPAIIEILQSGS---TEARENSAAALFSLSM-LDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTAL 510 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~---~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 510 (643)
.- -.-.+|.++.+=.+.+ .-+|+.|..+|..|.. .+-..-.-....++.+|...|.+...-+++.|..+=
T Consensus 946 ~~-~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 946 EH-LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred HH-HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 11 1224565555554443 6789999999999987 455544555678899999999887777888887653
No 320
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=74.45 E-value=95 Score=33.16 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=61.6
Q ss_pred cHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhc-cccccchhhh
Q 040749 406 IPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS-GSTEARENSAAALFSL-SMLDENKITI 482 (643)
Q Consensus 406 i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~L-s~~~~~k~~i 482 (643)
|..++.=|.+ ....+|..++--|+.-+.++..+..+...|.++.+++.+.. ++......++.+++.+ +.+..+-..+
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~ 102 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLL 102 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhh
Confidence 4566665663 35678888888888888899999999999999999999954 3443555555555544 4433333333
Q ss_pred hccCChHHHHHHhc
Q 040749 483 GLSDGIPPLVDLLQ 496 (643)
Q Consensus 483 ~~~g~i~~Lv~lL~ 496 (643)
-..+....++.++.
T Consensus 103 ~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 103 LDRDSLRLLLKLLK 116 (361)
T ss_pred hchhHHHHHHHHhc
Confidence 34556666677776
No 321
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=74.33 E-value=3.1 Score=44.83 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=89.9
Q ss_pred HHHHHHHhccccccchhhhh-ccCChHHHHHHhccCChhhHHHHHHHHHHhcc----CCcc-hH---HHHHcCChHHHHH
Q 040749 464 NSAAALFSLSMLDENKITIG-LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL----NQAN-KA---RAIDAGIVLPLMN 534 (643)
Q Consensus 464 ~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~----~~~n-~~---~lv~~G~v~~Lv~ 534 (643)
.|..++.-+-..+..+...+ -..+.......+.+.....+..+++++.|++. +-++ +. ++. .-.+..+..
T Consensus 410 aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~ 488 (728)
T KOG4535|consen 410 AASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLR 488 (728)
T ss_pred HHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHH
Confidence 33333333333344333322 23455555555666666778888888888863 2222 11 111 111222222
Q ss_pred Hhcc---CChhhHHHHHHHHHHHhCChh-----hHHHhhcCCcHHHHH-HHHhcCChHHHHHHHHHHHHHhcCCHHHHH-
Q 040749 535 LLEE---RNLGMVDEALSILLLLATHPE-----GRHKIGQLSFIETLV-EYIREGTPKNKECATAVLLELGANNSSFIL- 604 (643)
Q Consensus 535 lL~~---~~~~~~~~Al~~L~~La~~~~-----~~~~i~~~g~i~~Lv-~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~- 604 (643)
.-.. ....+..+|+..|.|+..--+ +-..+.+ +.+..+. ...-.+.-.+|.+|..++.||.++..-..+
T Consensus 489 ~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~ 567 (728)
T KOG4535|consen 489 SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQT 567 (728)
T ss_pred HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhcccceecccccccchHHHHHHHHhhcCccccccC
Confidence 2211 456788899999999876322 1111111 2222211 112234567899999999999886532111
Q ss_pred HHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHH
Q 040749 605 AALQYGVYEHLIQLTEGG-TSRAQRKANALLQL 636 (643)
Q Consensus 605 ~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~ 636 (643)
.-...-+++.|..++.+. |-++|-.|+..|..
T Consensus 568 ~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 568 APWASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred CCchHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 112244678888887654 66777777766643
No 322
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=74.30 E-value=14 Score=33.89 Aligned_cols=71 Identities=11% Similarity=0.146 Sum_probs=59.5
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.....+..|..++.. .++.++.++..++....
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 4677888888889999999999999999988765 44566677889999999987 78899999999988764
No 323
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=74.08 E-value=79 Score=34.49 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHH--HHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcch
Q 040749 362 EEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRIL--IADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 362 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~--i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~ 437 (643)
..+..++..++.. ..+.+..|+..|..+...+...-.. +. ..+..++..|+. .+...+..|++.|..++.+...
T Consensus 286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~--~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~ 363 (516)
T KOG2956|consen 286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA--EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA 363 (516)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH--HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH
Confidence 3455666666543 5566778888777766555221111 11 134567888887 6888899999999999865543
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHH-HHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAA-LFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~-L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
+-.=-..-+|..+++.-++...++-..|... +.-++..+.. ..|..+..++...+...-..++..+..|...
T Consensus 364 ~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~-------~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~ 436 (516)
T KOG2956|consen 364 RLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL-------QCIVNISPLILTADEPRAVAVIKMLTKLFER 436 (516)
T ss_pred hhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch-------hHHHHHhhHHhcCcchHHHHHHHHHHHHHhh
Confidence 3211112244445554445444443333332 3333332222 1233344444433332222333333333321
Q ss_pred CcchHHH--HHcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 040749 517 QANKARA--IDAGIVLPLMNLLEERNLGMVDEALSILLLLA 555 (643)
Q Consensus 517 ~~n~~~l--v~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La 555 (643)
-.+..+ +=..+.|.+++-..+.+..++..|+.+|..+.
T Consensus 437 -l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 437 -LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred -cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 011111 11456788888888888888888888877664
No 324
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=72.96 E-value=14 Score=31.00 Aligned_cols=71 Identities=11% Similarity=0.067 Sum_probs=55.3
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 040749 530 LPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSS 601 (643)
Q Consensus 530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 601 (643)
...+..|.++.+.++..++..|..|..... ...+...+++..+...|++.++-+--+|+..|..|+...++
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 345666777888899999999999988665 11122246677778888888999999999999999987775
No 325
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=72.73 E-value=31 Score=32.18 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=81.1
Q ss_pred CChHHHHHHhccC-ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHh
Q 040749 486 DGIPPLVDLLQNG-TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKI 564 (643)
Q Consensus 486 g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i 564 (643)
..++.|.++|+++ +...+..++++|..|-.-++.+-+.+..+.-..- -...........+ .+....+ .-+..
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~---~~~~~~~~~~~~l---~~~~~~~-~~ee~ 82 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLDSKS---SENSNDESTDISL---PMMGISP-SSEEY 82 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCCccc---cccccccchhhHH---hhccCCC-chHHH
Confidence 4466777888765 6889999999999998777776664432211000 0011111112111 1111111 22333
Q ss_pred hcCCcHHHHHHHHhcCC-hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749 565 GQLSFIETLVEYIREGT-PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636 (643)
Q Consensus 565 ~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~ 636 (643)
.-.-++..|+++|++.+ ..-...++.++..+...-+..+...+ .-++|.++..+.+.++..++.-..-|..
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34457888999998766 33455677777776643322222222 3479999999998888777664444443
No 326
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=72.18 E-value=4.5 Score=32.30 Aligned_cols=47 Identities=11% Similarity=0.218 Sum_probs=22.6
Q ss_pred cccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 275 FLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 275 f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
-.|.||++-.- +|.+. .|+.-.||.|.+--.++|+..||.|+.+...
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 46999988653 55554 4788889999998888999999999876654
No 327
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=72.17 E-value=19 Score=32.94 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=58.6
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHh
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQLISK 639 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~L~~ 639 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+. ....+...+.+..|..++.+ .++++++++..++..-..
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 4677888888899999999999999998887544 55566678889999998874 577999999999886553
No 328
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.09 E-value=24 Score=39.15 Aligned_cols=151 Identities=14% Similarity=0.096 Sum_probs=87.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHH-hccCChhhHHHHHHHHHHhccCCcchHHHHHcCC
Q 040749 450 IIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDL-LQNGTIRGKKDAVTALFNLSLNQANKARAIDAGI 528 (643)
Q Consensus 450 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~ 528 (643)
|-+++.+.++-.|.+.+-++..--.. -++.|++..|+.. ..+++..+++.|+.||.-+|..+.+ .
T Consensus 521 I~ell~d~ds~lRy~G~fs~alAy~G------Tgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~--------~ 586 (926)
T COG5116 521 INELLYDKDSILRYNGVFSLALAYVG------TGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD--------L 586 (926)
T ss_pred HHHHhcCchHHhhhccHHHHHHHHhc------CCcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc--------h
Confidence 33455555555555544433211000 1236788888887 6778999999999999988876555 4
Q ss_pred hHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHH
Q 040749 529 VLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA-NNSSFILAA 606 (643)
Q Consensus 529 v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~-~~~~~~~~~ 606 (643)
++..+++|.+ .+.-++.-.+-+|..-|..... .-++..|-.++.+...-+|..|+-++..+.. ++++....+
T Consensus 587 lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v 660 (926)
T COG5116 587 LVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV 660 (926)
T ss_pred hhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH
Confidence 5666777765 4444544444455544443211 1245556667777777788888777766543 343322111
Q ss_pred HHCCcHHHHHHHhhcC
Q 040749 607 LQYGVYEHLIQLTEGG 622 (643)
Q Consensus 607 ~~~g~i~~L~~ll~~g 622 (643)
.+++..+.+++.+.
T Consensus 661 --~~I~k~f~~vI~~K 674 (926)
T COG5116 661 --KRIIKKFNRVIVDK 674 (926)
T ss_pred --HHHHHHHHHHHhhh
Confidence 23455555555444
No 329
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.05 E-value=19 Score=36.99 Aligned_cols=136 Identities=14% Similarity=0.184 Sum_probs=86.3
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhh
Q 040749 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIG 565 (643)
Q Consensus 487 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~ 565 (643)
++...+..|.+.++..+.+++..|..|+.++. ....+. ..++-.+++-+......+...|+.++..+.+.-... +.
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~--i~ 165 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNS--ID 165 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH--HH
Confidence 45556667778888888888888888886543 222222 234555666666677788888888888886632211 11
Q ss_pred cCCcHHHH-HHHHhcCC---hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 040749 566 QLSFIETL-VEYIREGT---PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALL 634 (643)
Q Consensus 566 ~~g~i~~L-v~lL~~~s---~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL 634 (643)
+ -...+ ..++..++ .=+++.|-.+|..+..+-.. .-+++.|...+.+.+++++.++..+.
T Consensus 166 ~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~ 229 (334)
T KOG2933|consen 166 Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCF 229 (334)
T ss_pred H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccc
Confidence 1 23333 33444333 33688888888888765321 13577777788888888888876543
No 330
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.04 E-value=98 Score=37.17 Aligned_cols=80 Identities=26% Similarity=0.247 Sum_probs=68.4
Q ss_pred chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHh---cCChHHHHHHHHHHHH
Q 040749 519 NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIR---EGTPKNKECATAVLLE 594 (643)
Q Consensus 519 n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~---~~s~~~~e~A~~~L~~ 594 (643)
.+.++..+|++..|+..+-...+.++-+-+..|..++. ++.+.+.....|++..|++++. +|+...-.+|.+++..
T Consensus 900 dk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 900 DKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred hHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHHHH
Confidence 46678899999999999888889999999999999988 6788888888999999999886 4666777888888888
Q ss_pred HhcC
Q 040749 595 LGAN 598 (643)
Q Consensus 595 L~~~ 598 (643)
||..
T Consensus 980 Lgay 983 (2799)
T KOG1788|consen 980 LGAY 983 (2799)
T ss_pred Hhhc
Confidence 8854
No 331
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=71.91 E-value=3.3 Score=30.05 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=23.1
Q ss_pred cccCccccc--CceecCCCC-----ccchHHHHHHHh-cCCCCCCCc
Q 040749 277 CPITLEIMR--DPVIIASGQ-----TFERESVQKWFD-SNHRTCPKT 315 (643)
Q Consensus 277 CpIc~~~m~--dPv~~~cg~-----ty~r~~I~~~~~-~~~~~cP~~ 315 (643)
|-||++.-. +|.+.||+- -..+.|+++|+. .+..+|+.|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 456666543 267778752 347899999999 455678876
No 332
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=71.79 E-value=99 Score=30.66 Aligned_cols=129 Identities=11% Similarity=0.107 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCCh------------------hhHHHHHHHHHHHhCChhhH
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNL------------------GMVDEALSILLLLATHPEGR 561 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~------------------~~~~~Al~~L~~La~~~~~~ 561 (643)
......++..+..|...+++...+.+.+.++.+.+.|...++ .+...=...+..|++++.|.
T Consensus 78 ~~y~~vGc~L~~~Ll~~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~~~Gl 157 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLSSPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSSTPNGL 157 (226)
T ss_pred hHHHHHHHHHHHHHHcCcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCChhHH
Confidence 344556677778888888887777788888888888765210 11222347788889999999
Q ss_pred HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH-HHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYE-HLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~-~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+.+-+.+....+..+....+. .....-+|.+|=-.. .|-.. .|-..+.+++..+|..|...|+.+-+
T Consensus 158 ~lLe~~~if~~l~~i~~~~~~--~~l~klil~~LDY~~---------~~~~R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 158 KLLERWNIFTMLYHIFSLSSR--DDLLKLILSSLDYSV---------DGHPRIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHCCHHHHHHHHHccCch--HHHHHHHHhhCCCCC---------ccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 999999999999999986532 222222444442111 22333 34467889999999999999987643
No 333
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.71 E-value=13 Score=42.17 Aligned_cols=132 Identities=20% Similarity=0.128 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc------CCcHHHH
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ------LSFIETL 573 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~------~g~i~~L 573 (643)
..+-++....|-.|+.-.++.- .+ -...++++|.+.+-.++...+.+.+|+..+-....++.+ ...+..+
T Consensus 276 ~~Gpk~islFl~kls~l~p~i~--lr--q~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll 351 (1128)
T COG5098 276 LSGPKDISLFLNKLSELSPGIM--LR--QYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLL 351 (1128)
T ss_pred ccChHHHHHHHHHHhhcCchHH--HH--HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHH
Confidence 3343444444445554434321 11 134567888777777777778888888763322223332 2345666
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 574 VEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 574 v~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
++-+.+.+|.+|..|+.++..+|.-+...... +..++....+-+++.+..+|++|.+++.-|
T Consensus 352 ~ERl~D~~py~RtKalqv~~kifdl~sk~~~~--r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 352 VERLSDTYPYTRTKALQVLEKIFDLNSKTVGR--RHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred HHHhhccchHHHHHHHHHHHHHHhCcccccch--HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 66667788999999999999998654322111 122455566777888999999999988744
No 334
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.82 E-value=41 Score=38.66 Aligned_cols=124 Identities=19% Similarity=0.148 Sum_probs=76.9
Q ss_pred cCChHHHHHH-hcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchH
Q 040749 444 QGAIPAIIEI-LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 444 ~g~i~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
.++|..|+.+ .+..+.++|..|.-+|.-.+..+ +...|..|.+|.. -++-++.-|+.||.--|....++.
T Consensus 553 nkair~lLh~aVsD~nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e 624 (929)
T KOG2062|consen 553 NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE 624 (929)
T ss_pred hhhHHHhhcccccccchHHHHHHHHHheeeEecC--------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH
Confidence 4566677776 55668899998888887665433 3457888888864 589999999999998887777765
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHH-hCC-hhhHHHhhcCCcHHHHHHHHhcCChH
Q 040749 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLL-ATH-PEGRHKIGQLSFIETLVEYIREGTPK 583 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~ 583 (643)
. +..|-.+..++..-++.-|+-+++.+ +++ +.....+ .++...+.+++.+....
T Consensus 625 A------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 625 A------INLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHED 680 (929)
T ss_pred H------HHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhH
Confidence 4 23333344455555566666655554 221 1111111 23455566666554433
No 335
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=70.60 E-value=2.5e+02 Score=34.02 Aligned_cols=151 Identities=15% Similarity=0.061 Sum_probs=90.2
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHH
Q 040749 485 SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLATHPEGRHK 563 (643)
Q Consensus 485 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~ 563 (643)
.+++..|...+++.+..++..|+.-+..++..-+ ..++ ..+|...++++... ++..-.-|+-+|+.||...=-...
T Consensus 340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 4677788888888899999999999999887655 2222 33566677766543 244445677888888763211110
Q ss_pred hhcCCcHHHHHHHHh--------cCChHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHH-HHHHHhhcCCHHHHHHHHHH
Q 040749 564 IGQLSFIETLVEYIR--------EGTPKNKECATAVLLELGANN-SSFILAALQYGVYE-HLIQLTEGGTSRAQRKANAL 633 (643)
Q Consensus 564 i~~~g~i~~Lv~lL~--------~~s~~~~e~A~~~L~~L~~~~-~~~~~~~~~~g~i~-~L~~ll~~g~~~~k~~A~~l 633 (643)
.. ..+++.+++-+. +....+|+.|+.+.|.+.+.. +.....+++. ..+ .|...+-+..-..|+.|..+
T Consensus 417 ~l-~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL-EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH-HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHHHHHH
Confidence 01 135666665553 234678999999999998754 3322222221 122 22233334455667777776
Q ss_pred HH-HHHhh
Q 040749 634 LQ-LISKS 640 (643)
Q Consensus 634 L~-~L~~~ 640 (643)
+. ++.|+
T Consensus 495 lqE~VGR~ 502 (1133)
T KOG1943|consen 495 LQENVGRQ 502 (1133)
T ss_pred HHHHhccC
Confidence 65 55454
No 336
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.24 E-value=1e+02 Score=35.86 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=49.0
Q ss_pred CcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc
Q 040749 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN 478 (643)
Q Consensus 405 ~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~ 478 (643)
..+.+=+.|++....+...|+.++.+|.... -..+ .-++..+--+++++..-+|-.|..+|..++.....
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~--~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTN--SREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccC--Hhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 4556667777888888888888888876421 1112 11566666677788888899999999998865443
No 337
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.71 E-value=3.9 Score=30.48 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=24.1
Q ss_pred ccccccCcccc--cCceec--CCCCccchHHHHH
Q 040749 274 EFLCPITLEIM--RDPVII--ASGQTFERESVQK 303 (643)
Q Consensus 274 ~f~CpIc~~~m--~dPv~~--~cg~ty~r~~I~~ 303 (643)
.-.|++|++.+ .|.+++ .||-.|.|.|..+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 35799999999 666665 4999999998754
No 338
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.26 E-value=2.8e+02 Score=35.01 Aligned_cols=201 Identities=18% Similarity=0.103 Sum_probs=107.0
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHh--cCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHH
Q 040749 375 KLEVQKEAVRKIRLLSKENPENRILIAD--CGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAII 451 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv 451 (643)
.|..+.-|+.-+..+++.. +..+.. .-.||.|.++=-.++..+| +|.+-++|.-. ++.+-..-.-...++-|+
T Consensus 970 ~wnSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq-~aM~sIW~~Li~D~k~~vd~y~neIl~eLL 1045 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQ-DAMTSIWNALITDSKKVVDEYLNEILDELL 1045 (1702)
T ss_pred hhhcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHH-HHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 4555555666666555332 222222 1367777777666777775 45666676554 333322111244667777
Q ss_pred HHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHH---HHHHHHHhcc---CCcc--hHH
Q 040749 452 EILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKD---AVTALFNLSL---NQAN--KAR 522 (643)
Q Consensus 452 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~---A~~aL~nLs~---~~~n--~~~ 522 (643)
.-|.+..+.+|+.++-+|..|-...+.-...-. +.....+.+.+.+=.+.+++. ++.+|..|+. +..| +.+
T Consensus 1046 ~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~ 1125 (1702)
T KOG0915|consen 1046 VNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGK 1125 (1702)
T ss_pred HhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHH
Confidence 777788899999999999999765443221111 233334444444333444443 4566666652 1111 222
Q ss_pred HHHcCChHHHHHH-hccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc
Q 040749 523 AIDAGIVLPLMNL-LEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE 579 (643)
Q Consensus 523 lv~~G~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 579 (643)
-+-+.++|.|+.- +.+.-++++.-++.++..|+.+....-.-.-+..++.|+.....
T Consensus 1126 ~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1126 EALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE 1183 (1702)
T ss_pred HHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc
Confidence 2222333433321 11345677888999999998765332111113456666655543
No 339
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=68.22 E-value=1.6e+02 Score=30.92 Aligned_cols=154 Identities=15% Similarity=0.133 Sum_probs=107.8
Q ss_pred cHHHHHhCCCCChHHHHHHHHHHHHhcC-Cc-chHHHHHh--cCChHHHHHHhcCC----C---------HHHHHHHHHH
Q 040749 406 IPPLVQLLPYPDSKILEHAVTAVLNLSI-DE-SNKRLIAQ--QGAIPAIIEILQSG----S---------TEARENSAAA 468 (643)
Q Consensus 406 i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~-~~k~~i~~--~g~i~~Lv~lL~~~----~---------~e~~~~Aa~~ 468 (643)
+..+.+.|++....+...++..|.++.. +. .....+.. .--.+.+.+++... . +.+|.+....
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888998888888899999999988 44 22333432 22345566666321 1 1677777777
Q ss_pred HHhcccc--ccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHH-hccCC----cchHHHHHcCChHHHHHHhccCC
Q 040749 469 LFSLSML--DENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFN-LSLNQ----ANKARAIDAGIVLPLMNLLEERN 540 (643)
Q Consensus 469 L~~Ls~~--~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~----~n~~~lv~~G~v~~Lv~lL~~~~ 540 (643)
+..+... ...+..+.. .+.+..+.+-|..++.+.....+.+|.. +..++ ..+..+....++..|+.+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 6665543 345555554 6778999999988888999889988884 44333 23455666778888999777666
Q ss_pred h----hhHHHHHHHHHHHhCChh
Q 040749 541 L----GMVDEALSILLLLATHPE 559 (643)
Q Consensus 541 ~----~~~~~Al~~L~~La~~~~ 559 (643)
+ .+.+.+-..|..+|.++.
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 6 888999999999997554
No 340
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=68.06 E-value=1.4e+02 Score=30.25 Aligned_cols=214 Identities=12% Similarity=0.134 Sum_probs=120.9
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHhccccccchhhhhc
Q 040749 408 PLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQS--GSTEARENSAAALFSLSMLDENKITIGL 484 (643)
Q Consensus 408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 484 (643)
.|=..|.++|..+|..|+..|..+... +... ....-+..|+..+.+ .+......++..+..|..... ..
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-----~~ 74 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-----FS 74 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-----CC
Confidence 344567888999999999888876542 2111 112224445554432 244444455666655542221 11
Q ss_pred cCChHHHHHHh-ccC-----ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 040749 485 SDGIPPLVDLL-QNG-----TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATH 557 (643)
Q Consensus 485 ~g~i~~Lv~lL-~~~-----~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~ 557 (643)
.+.+..+++.+ ++- ....+..+...|..|..+......-...+.+..+++.+.. .||.-...+..++..+...
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 12233333332 222 3455666666676665442222222234567777887765 6888888888888877653
Q ss_pred hhhHHHhhcCCcHHHHHHHHhc----------CCh--HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHH
Q 040749 558 PEGRHKIGQLSFIETLVEYIRE----------GTP--KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSR 625 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~----------~s~--~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~ 625 (643)
-+ . ......+.+.+.. ++| -.++.-...|...-..++.... -++|.|++-+.++++.
T Consensus 155 ~~-----~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~-----~~~p~LleKL~s~~~~ 223 (262)
T PF14500_consen 155 FD-----I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAP-----FAFPLLLEKLDSTSPS 223 (262)
T ss_pred cc-----c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHH-----HHHHHHHHHHcCCCcH
Confidence 32 1 3445555555531 222 2355555555554444554433 3689999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 040749 626 AQRKANALLQLISKS 640 (643)
Q Consensus 626 ~k~~A~~lL~~L~~~ 640 (643)
+|.-+...|......
T Consensus 224 ~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 224 VKLDSLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888888876543
No 341
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=68.02 E-value=29 Score=31.61 Aligned_cols=71 Identities=20% Similarity=0.150 Sum_probs=57.4
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEG------GTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~------g~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.+...|+.+|-.+..+.+. ....+...+.+.-|+.++.. .++.+|.+...++..-.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4677788889999999999999999999887654 45566677888889998853 36799999999887654
No 342
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=67.82 E-value=2.1 Score=30.73 Aligned_cols=37 Identities=11% Similarity=0.280 Sum_probs=22.7
Q ss_pred ccCceecCCCCcc-chHHHHHHHhcCCCCCCCcCccccc
Q 040749 284 MRDPVIIASGQTF-ERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 284 m~dPv~~~cg~ty-~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
+.+--.+.|..+| |..|+...+..++ .||.|+.+++.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~s~-~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSRSD-RCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SSSS-EETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhcccc-CCCcccCcCcc
Confidence 3444456677666 9999999887654 69999998875
No 343
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=67.32 E-value=95 Score=31.54 Aligned_cols=214 Identities=14% Similarity=0.074 Sum_probs=119.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC--CChHHHHHHHHHHHHhcCCcchHHHHHhcC
Q 040749 368 VEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY--PDSKILEHAVTAVLNLSIDESNKRLIAQQG 445 (643)
Q Consensus 368 v~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g 445 (643)
=..|.+.++..|.+|+..|......-+... ....-+..|+.++.+ .|......++..+..|.......... ...
T Consensus 5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-~~~ 80 (262)
T PF14500_consen 5 GEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-AVK 80 (262)
T ss_pred hhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-HHH
Confidence 356788899999999998887775444222 122224455554432 35555555566666666432211111 011
Q ss_pred ChHHHHHHhc--CCCHHHHHHHHHHHHhccccccchhhhh--ccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcch
Q 040749 446 AIPAIIEILQ--SGSTEARENSAAALFSLSMLDENKITIG--LSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 446 ~i~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
.+..+.+-.. +-....|..+-.+|..|... +...+. ..+.+..++.++.. .+|+....+...+..+...-+.
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~- 157 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI- 157 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-
Confidence 1222222111 11245677777777777543 223332 24678888888764 4788887777777766543221
Q ss_pred HHHHHcCChHHHHHHhcc-------C---Ch-hhH-H-HHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHH
Q 040749 521 ARAIDAGIVLPLMNLLEE-------R---NL-GMV-D-EALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKEC 587 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~-------~---~~-~~~-~-~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~ 587 (643)
...++.+.+.+.. + ++ ++. + ...+....+++++. + ..-+++.|++-|.++++.+|.-
T Consensus 158 -----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~----f-a~~~~p~LleKL~s~~~~~K~D 227 (262)
T PF14500_consen 158 -----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL----F-APFAFPLLLEKLDSTSPSVKLD 227 (262)
T ss_pred -----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh----h-HHHHHHHHHHHHcCCCcHHHHH
Confidence 2233344444322 1 22 232 2 22333444455442 2 2357999999999999999999
Q ss_pred HHHHHHHHhcC
Q 040749 588 ATAVLLELGAN 598 (643)
Q Consensus 588 A~~~L~~L~~~ 598 (643)
++..|...+..
T Consensus 228 ~L~tL~~c~~~ 238 (262)
T PF14500_consen 228 SLQTLKACIEN 238 (262)
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 344
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.68 E-value=1.4e+02 Score=35.68 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=81.2
Q ss_pred HHHHHHhcCCcchHHHHHhcCChHHHHHHhc------C--CCHHHHHHHHHHHHhcccc----ccchhhhhccCChHHHH
Q 040749 425 VTAVLNLSIDESNKRLIAQQGAIPAIIEILQ------S--GSTEARENSAAALFSLSML----DENKITIGLSDGIPPLV 492 (643)
Q Consensus 425 ~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~------~--~~~e~~~~Aa~~L~~Ls~~----~~~k~~i~~~g~i~~Lv 492 (643)
...+...+....+|..+ .|.++-+++.|. . .++..+..|..++.+|+.. ..++. ..+.=.++.+.
T Consensus 392 a~~~l~~~~~KR~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~-~mE~flv~hVf 468 (1010)
T KOG1991|consen 392 ALDFLTTLVSKRGKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKS-QMEYFLVNHVF 468 (1010)
T ss_pred HHHHHHHHHHhcchhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHH-HHHHHHHHHhh
Confidence 33344444344444444 566777778776 1 2467778888888888721 11221 22222344444
Q ss_pred HHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChh-hHHHhhc--C
Q 040749 493 DLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPE-GRHKIGQ--L 567 (643)
Q Consensus 493 ~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~-~~~~i~~--~ 567 (643)
..+++..--.+..||+.+...+. .=.+...+ ..++....+.|. +.+-.++-.|+-+|..+-++.+ ..+.+.. .
T Consensus 469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp 546 (1010)
T KOG1991|consen 469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVP 546 (1010)
T ss_pred HhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh
Confidence 55566666677789999988883 21222111 123444455555 6667777777777777765433 3333332 2
Q ss_pred CcHHHHHHHHhc
Q 040749 568 SFIETLVEYIRE 579 (643)
Q Consensus 568 g~i~~Lv~lL~~ 579 (643)
+.+..|+.+.+.
T Consensus 547 ~~mq~lL~L~ne 558 (1010)
T KOG1991|consen 547 PIMQELLKLSNE 558 (1010)
T ss_pred HHHHHHHHHHHh
Confidence 344445555543
No 345
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.64 E-value=46 Score=40.22 Aligned_cols=139 Identities=18% Similarity=0.132 Sum_probs=100.3
Q ss_pred ChHHHHHHhcc----CChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhh
Q 040749 487 GIPPLVDLLQN----GTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPEG 560 (643)
Q Consensus 487 ~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~ 560 (643)
..|.++...++ +++..+..|..||+.+.. ..+.+. ...|.|+.++. ++++.++.+++..++-++-.-.+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence 44556666543 367888888888887653 222221 24677888886 58888899999888888653211
Q ss_pred HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 561 RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 561 ~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+++ -.-+.|...|++.++.+|..|+.+|.+|-.++ .+.-.|.++-+...+.+++++++.-|....+.|+.
T Consensus 995 ---lie-~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen 995 ---LIE-PWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred ---ccc-hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence 112 34567888888999999999999999998754 33347899999999999999999999866555543
No 346
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=66.31 E-value=88 Score=34.15 Aligned_cols=145 Identities=18% Similarity=0.109 Sum_probs=87.1
Q ss_pred hHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHH-HHHHHHhCChhhHHHhh
Q 040749 488 IPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEAL-SILLLLATHPEGRHKIG 565 (643)
Q Consensus 488 i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al-~~L~~La~~~~~~~~i~ 565 (643)
+..+++.|.+ .+...++.|++.|..++.+...+-.=-..-+|..+++.-.+..+++...|. .++..++++..
T Consensus 331 L~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P------ 404 (516)
T KOG2956|consen 331 LLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLP------ 404 (516)
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCc------
Confidence 4456666766 677889999999999987665543211123444455544444444444443 33444444321
Q ss_pred cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 566 QLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 566 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
.-.|..+..++.+.+...--.++..+-.++..-+..--.-+-..+.|.+++-..+.+..+|+.|+.+|-.+..
T Consensus 405 -~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 405 -LQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred -hhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 1245566666666554444555556667776533222222235688888888899999999999988876643
No 347
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=65.75 E-value=2e+02 Score=31.03 Aligned_cols=102 Identities=11% Similarity=0.092 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-----ChHHHHHHHHHHHHhcC-CcchHHH-HHhcCCh
Q 040749 375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-----DSKILEHAVTAVLNLSI-DESNKRL-IAQQGAI 447 (643)
Q Consensus 375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----d~~~~~~a~~~L~nLs~-~~~~k~~-i~~~g~i 447 (643)
+.++..+|+++|.++..+++..|....+......+++++... ...++..=+..|.-|.. ....|.+ +++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 356778999999999999999999999988887777765432 11233333444444433 3344544 4588999
Q ss_pred HHHHHHhcCC---------CH------HHHHHHHHHHHhccccc
Q 040749 448 PAIIEILQSG---------ST------EARENSAAALFSLSMLD 476 (643)
Q Consensus 448 ~~Lv~lL~~~---------~~------e~~~~Aa~~L~~Ls~~~ 476 (643)
+.+.+.|... ++ ...-.+..++||+..+.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 9999998642 11 23346777888887543
No 348
>PHA02862 5L protein; Provisional
Probab=63.63 E-value=5.9 Score=35.70 Aligned_cols=45 Identities=16% Similarity=0.343 Sum_probs=32.9
Q ss_pred ccccCcccccCceecCCCC-----ccchHHHHHHHh-cCCCCCCCcCccccc
Q 040749 276 LCPITLEIMRDPVIIASGQ-----TFERESVQKWFD-SNHRTCPKTRQTLAH 321 (643)
Q Consensus 276 ~CpIc~~~m~dPv~~~cg~-----ty~r~~I~~~~~-~~~~~cP~~~~~l~~ 321 (643)
.|-||.+--.++ .-||.. --.+.|+++|++ ++...||.|+.+..-
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 588888875444 356643 347999999998 456689999987754
No 349
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=63.48 E-value=2.9 Score=47.36 Aligned_cols=49 Identities=22% Similarity=0.541 Sum_probs=40.2
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCcCcccccC
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKTRQTLAHL 322 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~ 322 (643)
+..||||.....+|+.+.|-|.||+.|+-.-|.. +...||+|+......
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 4679999999999999999999999999876653 345799998655543
No 350
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=63.07 E-value=87 Score=36.00 Aligned_cols=130 Identities=17% Similarity=0.149 Sum_probs=86.5
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHH
Q 040749 485 SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHK 563 (643)
Q Consensus 485 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~ 563 (643)
..++|.|..-+++.+..++..++..+-+.+..-+ ...++.-++|.+..+... .+..++.+++.++..+.. .
T Consensus 388 ~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q------~ 459 (700)
T KOG2137|consen 388 EKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ------R 459 (700)
T ss_pred HHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH------H
Confidence 3456777777788888999999988888775444 456666778888777443 667788888888888872 2
Q ss_pred hhcCCcHH---HHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC
Q 040749 564 IGQLSFIE---TLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGT 623 (643)
Q Consensus 564 i~~~g~i~---~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~ 623 (643)
+-...+++ .+.+-.+..+|......+.+..++....+.. +.++-..++|.++-+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence 22223333 4444444566777777777766665443322 44455678888888887765
No 351
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=62.92 E-value=8.3 Score=27.37 Aligned_cols=39 Identities=18% Similarity=0.437 Sum_probs=22.1
Q ss_pred cccCcccccCceecC---CCCccchHHHHHHHhcCCC-CCCCc
Q 040749 277 CPITLEIMRDPVIIA---SGQTFERESVQKWFDSNHR-TCPKT 315 (643)
Q Consensus 277 CpIc~~~m~dPv~~~---cg~ty~r~~I~~~~~~~~~-~cP~~ 315 (643)
|-+|.++..--+.=+ |+-.+...|++.+|..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 556777766555533 7888999999999985433 59976
No 352
>PRK12495 hypothetical protein; Provisional
Probab=62.87 E-value=10 Score=36.86 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHH
Q 040749 209 DLKYETIAIRNLVKERGSQSSESIQQMIDLLNKF 242 (643)
Q Consensus 209 ~~~~E~~~l~~~~~~~~~~~~~~~~~~~~ll~~~ 242 (643)
|...|.+.|++..+.. .+.-+..++|..||.+.
T Consensus 5 DkEaEREkLREKye~d-~~~R~~~~~ma~lL~~g 37 (226)
T PRK12495 5 DKEAEREKLREKYEQD-EQKREATERMSELLLQG 37 (226)
T ss_pred hHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhh
Confidence 3455666666654331 12223457777777754
No 353
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=62.72 E-value=68 Score=36.83 Aligned_cols=137 Identities=12% Similarity=0.166 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHh-CCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQL-LPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l-L~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
..++.|...+++.+..+|..++..+-..+..-+ ...+..-.+|.|-.+ +++.+..++.+++.++..+. +....
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~ 462 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDK 462 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHH
Confidence 567788888899999999999999988884322 344555567777664 45568899999999999988 22222
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHH
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKK 504 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~ 504 (643)
..-..-+.++.+..+..++.+......+..++.....+.+......++|.++.+...+...+..
T Consensus 463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Q 526 (700)
T KOG2137|consen 463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQ 526 (700)
T ss_pred HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHH
Confidence 2222345566666667788888888888777776655544555578889998887766544433
No 354
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=61.65 E-value=54 Score=27.90 Aligned_cols=92 Identities=11% Similarity=0.171 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHH-hcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc
Q 040749 377 EVQKEAVRKIRLLSKENPENRILIA-DCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ 455 (643)
Q Consensus 377 ~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~ 455 (643)
+++..|+..|..=..++--.-..++ ..+.+..|+.-+..++...++.++..|..+..++.....+.+-|+...+-++=.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~ 81 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRP 81 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHh
Confidence 4566666655433322222222233 345666777777777777889999999999999999999989999888666655
Q ss_pred CCCHHHHHHHHHH
Q 040749 456 SGSTEARENSAAA 468 (643)
Q Consensus 456 ~~~~e~~~~Aa~~ 468 (643)
.-++..+...-.+
T Consensus 82 ~~~~~~~~~id~i 94 (98)
T PF14726_consen 82 NVEPNLQAEIDEI 94 (98)
T ss_pred cCCHHHHHHHHHH
Confidence 4455554443333
No 355
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.03 E-value=9 Score=44.51 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCCCCccccccCcccc-cCceec-CCCCccchHHHHHHHhc
Q 040749 269 LVIPHEFLCPITLEIM-RDPVII-ASGQTFERESVQKWFDS 307 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m-~dPv~~-~cg~ty~r~~I~~~~~~ 307 (643)
..+...-.|-+|...+ ..|..+ ||||.|.+.||.+....
T Consensus 812 ~v~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 812 RVLEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred EEecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 3455567899998765 478765 99999999999998753
No 356
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.67 E-value=4.7 Score=42.02 Aligned_cols=48 Identities=19% Similarity=0.452 Sum_probs=38.9
Q ss_pred cccccCcccccC---ceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 275 FLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 275 f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
+.|.|+++.|.| |++.|.|++|-...|..|=..++-.||.++..+...
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~ 381 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYS 381 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHH
Confidence 567888888874 788899999999999998776557899988776653
No 357
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=60.64 E-value=50 Score=30.89 Aligned_cols=107 Identities=20% Similarity=0.269 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcC--CcHHHHHhCCCCC-hHHHHHHHHHHHHhcC----C
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCG--AIPPLVQLLPYPD-SKILEHAVTAVLNLSI----D 434 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~~d-~~~~~~a~~~L~nLs~----~ 434 (643)
.-+..+..+|++++++.+..++.-++..+..++ .+.+.+.| .+..|+.+|+.++ ..+.+.++.+|..+.. .
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 445667788889999999999988888884332 45555544 6788899998764 4567777777766643 3
Q ss_pred cchHHHHHh---cCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 040749 435 ESNKRLIAQ---QGAIPAIIEILQSGSTEARENSAAALFSL 472 (643)
Q Consensus 435 ~~~k~~i~~---~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~L 472 (643)
++....+.. .+.+..++.+++. ......+..+|..+
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~l 141 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATL 141 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHH
Confidence 443444442 3345555555543 23334444444443
No 358
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=59.71 E-value=46 Score=29.92 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=56.3
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhcCC--HHHHHHHHHHHHHHHh
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEGGT--SRAQRKANALLQLISK 639 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g~--~~~k~~A~~lL~~L~~ 639 (643)
.++..|-+-|.+++|.++..|+.+|-.+..+.+. ....+.....+..|..++.... +.+++++..++..-..
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 4567788888899999999999999999888554 5566667788899998887653 3489999888876543
No 359
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=59.70 E-value=59 Score=37.43 Aligned_cols=164 Identities=20% Similarity=0.129 Sum_probs=86.9
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhcc----CChhhHHHHHHHHHHhc----
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQN----GTIRGKKDAVTALFNLS---- 514 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs---- 514 (643)
..++..+.+++.++.... ..|+.+|..|.... .. ....+..+..+++. .++..+..|+.++..|.
T Consensus 394 ~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 394 NPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 346677777777754322 23455565554321 11 12345666666654 24556666766666664
Q ss_pred cCC------cchHHHHHcCChHHHHHHhcc----CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC---C
Q 040749 515 LNQ------ANKARAIDAGIVLPLMNLLEE----RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG---T 581 (643)
Q Consensus 515 ~~~------~n~~~lv~~G~v~~Lv~lL~~----~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~---s 581 (643)
... ......+...+++.|...|.. .+..-+..++.+|.|+.. ...++.+..++... +
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~ 537 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVP 537 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccc
Confidence 221 112223345567777777752 455667778888888743 24566666666654 5
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC--CHHHHHHHH
Q 040749 582 PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG--TSRAQRKAN 631 (643)
Q Consensus 582 ~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~ 631 (643)
...|..|+++|..+....+.. +.+.|+.+..+. ++++|-.|.
T Consensus 538 ~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~ 581 (618)
T PF01347_consen 538 HFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAY 581 (618)
T ss_dssp HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHH
Confidence 677888888888777666643 344455555443 344554443
No 360
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=58.85 E-value=30 Score=32.41 Aligned_cols=108 Identities=19% Similarity=0.105 Sum_probs=64.4
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccC-ChhhHHHHHHHHHHhccCCcchHH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLNQANKAR 522 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~~n~~~ 522 (643)
.+..+..+|++++++.|-.++..+..+..... ...+.+ .-.+..|+..|+.. +...++.|+.+|..|...-.+...
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 45567778888888888877777666654322 233323 34678888888764 456777888888777543333333
Q ss_pred HHH-------cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 523 AID-------AGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 523 lv~-------~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
+.+ .+.++.+++++.+ ....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 332 2334444444432 4556666666666643
No 361
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=57.83 E-value=4 Score=40.17 Aligned_cols=48 Identities=15% Similarity=0.382 Sum_probs=32.3
Q ss_pred cccCcccc-cCce-ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 277 CPITLEIM-RDPV-IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 277 CpIc~~~m-~dPv-~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
|--|+..- .||. +++|+|.||..|...-. ...||.|++++....+.+|
T Consensus 6 Cn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 6 CNKCFRFPSQDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred eccccccCCCCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc
Confidence 44443322 5775 45899999999985432 2279999998766555554
No 362
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=57.81 E-value=32 Score=31.22 Aligned_cols=71 Identities=20% Similarity=0.178 Sum_probs=55.5
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhhcC-CHH---HHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEHLIQLTEGG-TSR---AQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~g-~~~---~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.+++|.++..|+.+|-.+..+.+.. ...+.....+..|..++.+. +.. +|+++..+|....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999887644 45555566888999988754 333 8999998887654
No 363
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=57.45 E-value=69 Score=33.99 Aligned_cols=144 Identities=16% Similarity=0.108 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-------ChHHHHHHHHHHHHhcC
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-------DSKILEHAVTAVLNLSI 433 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-------d~~~~~~a~~~L~nLs~ 433 (643)
......+...+.+.+...+..|+..|+.-..- ...+|.++.++... +.......+..+..|..
T Consensus 177 q~yf~~It~a~~~~~~~~r~~aL~sL~tD~gl----------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~ 246 (343)
T cd08050 177 QLYFEEITEALVGSNEEKRREALQSLRTDPGL----------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD 246 (343)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhccCCCc----------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc
Confidence 44556666666666777777777766533211 22678888877643 34445556666666666
Q ss_pred CcchHHHHHhcCChHHHHHHhc----------CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--Chh
Q 040749 434 DESNKRLIAQQGAIPAIIEILQ----------SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIR 501 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~----------~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~ 501 (643)
++.-.-...-...+|.++.++- ...+.+|..|+.+|..++..-.....-.....+..|...+.+. ...
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~ 326 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLT 326 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcc
Confidence 6554332222336777776652 1247899999999999874322211112233344455444432 233
Q ss_pred hHHHHHHHHHHhc
Q 040749 502 GKKDAVTALFNLS 514 (643)
Q Consensus 502 ~~~~A~~aL~nLs 514 (643)
...-|+..|..|.
T Consensus 327 ~~YGAi~GL~~lG 339 (343)
T cd08050 327 THYGAIVGLSALG 339 (343)
T ss_pred hhhHHHHHHHHhC
Confidence 3566666666553
No 364
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=57.14 E-value=84 Score=29.28 Aligned_cols=141 Identities=15% Similarity=0.137 Sum_probs=73.2
Q ss_pred ChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHH
Q 040749 446 AIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI 524 (643)
Q Consensus 446 ~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv 524 (643)
.++.|+.+|+++ +..+|..+..+|..|...|.++-+...... +.-. -.+.+...... .+.+... ...-....
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~~~~--~~~~~~~~~~~---~l~~~~~-~~~~ee~y 83 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL-DSKS--SENSNDESTDI---SLPMMGI-SPSSEEYY 83 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC-Cccc--cccccccchhh---HHhhccC-CCchHHHH
Confidence 456777888765 589999999999999887776655332110 0000 00111111111 1111111 11222333
Q ss_pred HcCChHHHHHHhccCChhh-HHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 525 DAGIVLPLMNLLEERNLGM-VDEALSILLLLATH--PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 525 ~~G~v~~Lv~lL~~~~~~~-~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
-..++..|+.+|.+++-.. ...++.++.++..+ ......+ ..++|.++..+++.++..++.-..-|..|
T Consensus 84 ~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 84 PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3446778888887633211 22344444444322 1121111 24788888888877777777766555544
No 365
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.05 E-value=1.1e+02 Score=38.35 Aligned_cols=107 Identities=11% Similarity=0.185 Sum_probs=73.8
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch--HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHH-hCChhhH
Q 040749 485 SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL-ATHPEGR 561 (643)
Q Consensus 485 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~--~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~~~~~ 561 (643)
.+.+..++..|.+....++..|+++|.++...++.. ...+..| +..-+.+....+++.|+..+... ..+++..
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~DssasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSSASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccchhHHHHHHHHHHhhhhhccHHHH
Confidence 456777888888888899999999999998765542 1233333 33334556778899999998754 3344333
Q ss_pred HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
.. .-..+.+-+.+.+..+|.++..+|..+|...|
T Consensus 891 ~q-----yY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 891 FQ-----YYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HH-----HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 22 23345555556678899999999999998765
No 366
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.79 E-value=73 Score=36.58 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=68.5
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH
Q 040749 527 GIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAA 606 (643)
Q Consensus 527 G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~ 606 (643)
|.+..++....+++..++-.++.+|+.+..+...+...+-.+....+..-+.+..|.+|..|+.+|..+-......
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---- 160 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---- 160 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----
Confidence 4444555555567888899999999999874433333333455666666667788999999999999885321110
Q ss_pred HHCCcHHHHHHHhhcC-CHHHHHHHHHHH
Q 040749 607 LQYGVYEHLIQLTEGG-TSRAQRKANALL 634 (643)
Q Consensus 607 ~~~g~i~~L~~ll~~g-~~~~k~~A~~lL 634 (643)
+-.+...+..++++. ++++|+.|...+
T Consensus 161 -e~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 161 -ECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred -cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 124566777777655 788888776544
No 367
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=56.08 E-value=12 Score=42.86 Aligned_cols=47 Identities=11% Similarity=-0.025 Sum_probs=35.8
Q ss_pred CCCCCccccccCcccccCce----ecC---CCCccchHHHHHHHhc-----CCCCCCCc
Q 040749 269 LVIPHEFLCPITLEIMRDPV----IIA---SGQTFERESVQKWFDS-----NHRTCPKT 315 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv----~~~---cg~ty~r~~I~~~~~~-----~~~~cP~~ 315 (643)
.+.++.-.|++|..-+.+|| +.+ |++.+|..||+.|.+. .+..|++|
T Consensus 91 eK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC 149 (1134)
T KOG0825|consen 91 EKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFC 149 (1134)
T ss_pred cccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccH
Confidence 35567788999988888865 234 8999999999999984 33456776
No 368
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=55.93 E-value=55 Score=27.86 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=53.6
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 040749 526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL 593 (643)
Q Consensus 526 ~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~ 593 (643)
.+.+..|++-+..++....+.++..|..|..++.+...+.+-|++..|.++-...++..+...-.++-
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 45566677777777777899999999999999999999999999998777776666666665555543
No 369
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=55.88 E-value=0.92 Score=35.65 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=22.3
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
+..||.|...|.- ..|+.+|..|-..+-.. ..||.|+++|..
T Consensus 1 e~~CP~C~~~L~~----~~~~~~C~~C~~~~~~~--a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQELEW----QGGHYHCEACQKDYKKE--AFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SBEEE----ETTEEEETTT--EEEEE--EE-TTT-SB-EE
T ss_pred CCcCCCCCCccEE----eCCEEECccccccceec--ccCCCcccHHHH
Confidence 4679999887641 22677788877654433 369999998874
No 370
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=55.38 E-value=5.6 Score=29.65 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=21.5
Q ss_pred CccccccCcccccCceecCCCCccchHHHHHHHhc-CCCCCCCcCc
Q 040749 273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS-NHRTCPKTRQ 317 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~-~~~~cP~~~~ 317 (643)
+.|.||.|++-+.. ..+..-+...+... ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~-------~~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSE-------SSLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCH-------HHHHHHHHhHCcCCCCCccCCCchh
Confidence 46899999884332 12333333333332 3357999975
No 371
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=54.79 E-value=3.7e+02 Score=30.61 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhH------HHHHHHHHHHH
Q 040749 56 CYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDME------IVIIRFHAVCE 129 (643)
Q Consensus 56 ~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c~~~sk~~l~~~~~------~~~~~~~~~~~ 129 (643)
..+..+++..+.--++||...+. .+.-...|+.-+..|..+..+.+.+... +-++..+ .+...+..+.+
T Consensus 184 ~~~~~~eld~L~~ql~ELe~~~l--~~~E~e~L~~e~~~L~n~e~i~~~~~~~---~~~L~~~~~~~~~~~~~~l~~~~~ 258 (563)
T TIGR00634 184 EQELAQRLDFLQFQLEELEEADL--QPGEDEALEAEQQRLSNLEKLRELSQNA---LAALRGDVDVQEGSLLEGLGEAQL 258 (563)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc--CCCcHHHHHHHHHHHhCHHHHHHHHHHH---HHHHhCCccccccCHHHHHHHHHH
Confidence 34567889999999999987663 3455666777777777777777776554 1222222 35555555555
Q ss_pred HHHHH
Q 040749 130 KLSAA 134 (643)
Q Consensus 130 ~l~~~ 134 (643)
.+...
T Consensus 259 ~l~~~ 263 (563)
T TIGR00634 259 ALASV 263 (563)
T ss_pred HHHHh
Confidence 55444
No 372
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.47 E-value=10 Score=36.65 Aligned_cols=45 Identities=13% Similarity=0.216 Sum_probs=36.0
Q ss_pred cccccCccccc--CceecCCCCccchHHHHHHHhc-------CCCCCCCcCccc
Q 040749 275 FLCPITLEIMR--DPVIIASGQTFERESVQKWFDS-------NHRTCPKTRQTL 319 (643)
Q Consensus 275 f~CpIc~~~m~--dPv~~~cg~ty~r~~I~~~~~~-------~~~~cP~~~~~l 319 (643)
-.|.+|...+. |.+-+-|-|.|...|+.+|-.. .+..||.|.+.+
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 35888888775 6777899999999999999873 235799997764
No 373
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.41 E-value=21 Score=32.39 Aligned_cols=74 Identities=20% Similarity=0.188 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCCC-ChH---HHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPYP-DSK---ILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~-d~~---~~~~a~~~L~nLs~ 433 (643)
....+..+-+.|.++++.+|..|+..|-.+.++. +..+..+....++..|.+++.+. ... +++.++..|...+.
T Consensus 40 ~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 40 AKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999875 56777787888888999977643 333 88888888877764
No 374
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=54.23 E-value=48 Score=31.40 Aligned_cols=51 Identities=18% Similarity=0.277 Sum_probs=31.5
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc-cHHHHHHHHHHH
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP-NYALKNLILQWC 338 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~~ 338 (643)
+..|.||.|...+. | ..-+..+ ++||.|+..+...+-.+ ...+...+...-
T Consensus 111 ~~~y~C~~~~~r~s----------f-----deA~~~~-F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~ 162 (176)
T COG1675 111 NNYYVCPNCHVKYS----------F-----DEAMELG-FTCPKCGEDLEEYDSSEEIEELESELDELE 162 (176)
T ss_pred CCceeCCCCCCccc----------H-----HHHHHhC-CCCCCCCchhhhccchHHHHHHHHHHHHHH
Confidence 45799998765543 3 2333333 78999999998655443 334555555443
No 375
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=53.76 E-value=7.5 Score=30.00 Aligned_cols=13 Identities=31% Similarity=0.846 Sum_probs=9.8
Q ss_pred ccchHHHHHHHhc
Q 040749 295 TFERESVQKWFDS 307 (643)
Q Consensus 295 ty~r~~I~~~~~~ 307 (643)
-|||.|+.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999984
No 376
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.75 E-value=7.3 Score=41.96 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=25.2
Q ss_pred ccccccCc-ccccCc---eecCCCCccchHHHHHHHh
Q 040749 274 EFLCPITL-EIMRDP---VIIASGQTFERESVQKWFD 306 (643)
Q Consensus 274 ~f~CpIc~-~~m~dP---v~~~cg~ty~r~~I~~~~~ 306 (643)
...|+||. +.+... .+..|||-||..|..+++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 47899999 443321 2456999999999999998
No 377
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=53.14 E-value=18 Score=33.24 Aligned_cols=39 Identities=18% Similarity=0.302 Sum_probs=23.2
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHh-cCCCCCCCcCcccccC
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFD-SNHRTCPKTRQTLAHL 322 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~-~~~~~cP~~~~~l~~~ 322 (643)
...|.||-|...+. -.-.....+ .+.+.||.|+..+...
T Consensus 97 ~~~Y~Cp~C~~~y~------------~~ea~~~~d~~~~f~Cp~Cg~~l~~~ 136 (147)
T smart00531 97 NAYYKCPNCQSKYT------------FLEANQLLDMDGTFTCPRCGEELEED 136 (147)
T ss_pred CcEEECcCCCCEee------------HHHHHHhcCCCCcEECCCCCCEEEEc
Confidence 56799997665444 111111111 2447899999998754
No 378
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=52.37 E-value=69 Score=36.63 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=76.8
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH------cCChHHHHHHhccCChhhHHHHHHHHHHHhCC----
Q 040749 488 IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID------AGIVLPLMNLLEERNLGMVDEALSILLLLATH---- 557 (643)
Q Consensus 488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~------~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~---- 557 (643)
...++.+|.+.+-..+-.-+.+..|+..+-....+|++ ...+..|++-|.+..+-.+..|+.++..++.-
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~ 380 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT 380 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence 45677888888877777778888888765444445554 33455566666678889999999999888762
Q ss_pred hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749 558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
+..|. .++...++-+++.+.-+|.+|+.++..|-...|
T Consensus 381 ~~~r~-----ev~~lv~r~lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 381 VGRRH-----EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred cchHH-----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCC
Confidence 32333 345566777888888999999999988765433
No 379
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=52.03 E-value=9.2 Score=40.43 Aligned_cols=29 Identities=31% Similarity=0.637 Sum_probs=21.5
Q ss_pred ccchHHHHHHHhc------------CCCCCCCcCcccccCC
Q 040749 295 TFERESVQKWFDS------------NHRTCPKTRQTLAHLS 323 (643)
Q Consensus 295 ty~r~~I~~~~~~------------~~~~cP~~~~~l~~~~ 323 (643)
.+|..|+-+||.+ |..+||+||.++.-.+
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 3466899999984 3457999999865443
No 380
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.81 E-value=7.8 Score=38.92 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=22.3
Q ss_pred CccchHHHHHHHhc------------CCCCCCCcCcccccC
Q 040749 294 QTFERESVQKWFDS------------NHRTCPKTRQTLAHL 322 (643)
Q Consensus 294 ~ty~r~~I~~~~~~------------~~~~cP~~~~~l~~~ 322 (643)
..+|++|+.+||.. |..+||.|++...-.
T Consensus 327 p~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 327 PLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 35688999999963 567899999876543
No 381
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=51.74 E-value=13 Score=32.10 Aligned_cols=42 Identities=29% Similarity=0.494 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHH
Q 040749 380 KEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422 (643)
Q Consensus 380 ~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~ 422 (643)
...+..+..++ ..|+....+++.|+++.|+.+|.+++.++..
T Consensus 64 d~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 45667777787 5788899999999999999999999887643
No 382
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.56 E-value=8.8 Score=38.47 Aligned_cols=35 Identities=11% Similarity=0.236 Sum_probs=29.0
Q ss_pred CccccccCcccccCceecCC----CCccchHHHHHHHhc
Q 040749 273 HEFLCPITLEIMRDPVIIAS----GQTFERESVQKWFDS 307 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~c----g~ty~r~~I~~~~~~ 307 (643)
..++|.+|.|.+.|...+-| +|.||--|-.+.++.
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 34899999999999987766 699998887777764
No 383
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=51.01 E-value=8.6 Score=36.95 Aligned_cols=45 Identities=11% Similarity=0.312 Sum_probs=34.8
Q ss_pred cccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
-.|.+|..+.---+.- +||-.|.+.|++.++++ ...||-|+--.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 5799999987654433 57778999999999998 567999965433
No 384
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=50.80 E-value=11 Score=24.92 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=7.9
Q ss_pred CCCCCCCcCcc
Q 040749 308 NHRTCPKTRQT 318 (643)
Q Consensus 308 ~~~~cP~~~~~ 318 (643)
....||.|+.+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 35679999764
No 385
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.79 E-value=69 Score=35.14 Aligned_cols=143 Identities=15% Similarity=0.034 Sum_probs=83.7
Q ss_pred CCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhc-cCChHH
Q 040749 413 LPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGL-SDGIPP 490 (643)
Q Consensus 413 L~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~ 490 (643)
.++++..++..|+..|.|.+..-+.+..-...-.+..++.-|.++ +.++.-.+..+|..++..-.+....-- -.+.-.
T Consensus 267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 345677889999999999998633332222334566666655544 567777788777776543222221110 123344
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCcchHH--HHH--cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 491 LVDLLQNGTIRGKKDAVTALFNLSLNQANKAR--AID--AGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 491 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~--lv~--~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
+..+..+.+++.+..|..+...|+.......+ +.+ .+...+|+-.|.++.+.+ ..|+......|.
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 55667788888999888888888876555444 332 233344555555555543 334444444443
No 386
>PLN02189 cellulose synthase
Probab=50.12 E-value=13 Score=44.49 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=36.3
Q ss_pred cccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
-.|.||++-.- +|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999998743 56554 377888999997766788899999988766
No 387
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=49.91 E-value=12 Score=32.13 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=32.2
Q ss_pred CCccccccCcccccCceecC-CC-----CccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749 272 PHEFLCPITLEIMRDPVIIA-SG-----QTFERESVQKWFDSNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~-cg-----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 324 (643)
++.+.|||++++-..-|.+. ++ .-|+...+.+....+. .=|.+|.+++...+
T Consensus 38 ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sMI 95 (113)
T PF06416_consen 38 EEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSMI 95 (113)
T ss_dssp CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTE
T ss_pred HHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhhE
Confidence 45689999999999999872 33 3699999999998764 46888888876544
No 388
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.26 E-value=68 Score=30.70 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=52.4
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 569 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
.++.++++..+.+..++..|+.++..+..++-.+= ...+|.|+.+..+.++.++..|..+++.+.+.+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 45667777777888999999999887766531110 126899999999999999999999999987543
No 389
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=48.95 E-value=32 Score=32.08 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=23.6
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
+..|.||-|..-++ | ..-+. .+++||.|+.+|...+
T Consensus 107 ~~~Y~Cp~c~~r~t----------f-----~eA~~-~~F~Cp~Cg~~L~~~d 142 (158)
T TIGR00373 107 NMFFICPNMCVRFT----------F-----NEAME-LNFTCPRCGAMLDYLD 142 (158)
T ss_pred CCeEECCCCCcEee----------H-----HHHHH-cCCcCCCCCCEeeecc
Confidence 56799998774432 1 11122 3679999999987644
No 390
>PLN02436 cellulose synthase A
Probab=48.48 E-value=14 Score=44.28 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=36.5
Q ss_pred cccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
-.|.||++-.- +|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 47999998653 56654 478889999997666788889999988766
No 391
>PHA03096 p28-like protein; Provisional
Probab=47.91 E-value=12 Score=38.41 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=29.4
Q ss_pred cccccCcccccC-c-------eecCCCCccchHHHHHHHhcC--CCCCCCcCc
Q 040749 275 FLCPITLEIMRD-P-------VIIASGQTFERESVQKWFDSN--HRTCPKTRQ 317 (643)
Q Consensus 275 f~CpIc~~~m~d-P-------v~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~ 317 (643)
-.|.||++.-.+ | ..-.|.|+||-.||..|-... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 348888875542 1 223699999999999999852 235666644
No 392
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.91 E-value=15 Score=34.13 Aligned_cols=32 Identities=22% Similarity=0.595 Sum_probs=25.0
Q ss_pred cCCCCccchHHHHHHHhc-----C-----CCCCCCcCccccc
Q 040749 290 IASGQTFERESVQKWFDS-----N-----HRTCPKTRQTLAH 321 (643)
Q Consensus 290 ~~cg~ty~r~~I~~~~~~-----~-----~~~cP~~~~~l~~ 321 (643)
..||+.|..-|+..|++. . ...||-|..++.-
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 469999999999999984 1 1259999887653
No 393
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=47.21 E-value=30 Score=32.99 Aligned_cols=53 Identities=21% Similarity=0.290 Sum_probs=31.4
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC-ccHHHHHHHHHHHHh
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA-PNYALKNLILQWCEK 340 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-pn~~l~~~i~~~~~~ 340 (643)
+..|.||-|..-++ |. .-+. .++.||.|+.+|...+-. --..|+..|...-..
T Consensus 115 ~~~Y~Cp~C~~ryt----------f~-----eA~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 115 NMFFFCPNCHIRFT----------FD-----EAME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEEE 168 (178)
T ss_pred CCEEECCCCCcEEe----------HH-----HHhh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHH
Confidence 56799998874433 21 1122 367999999998874321 123556666555443
No 394
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=46.84 E-value=18 Score=36.65 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=35.2
Q ss_pred ccccccCcccccC-c-e-ecCCCCccchHHHHHHHhc----------------------CCCCCCCcCcccccC
Q 040749 274 EFLCPITLEIMRD-P-V-IIASGQTFERESVQKWFDS----------------------NHRTCPKTRQTLAHL 322 (643)
Q Consensus 274 ~f~CpIc~~~m~d-P-v-~~~cg~ty~r~~I~~~~~~----------------------~~~~cP~~~~~l~~~ 322 (643)
.-.|-||+.-|.+ | + .++|-|-|...|+.+++.. ....||+|+.++...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 4679999998864 4 3 3589998888888777653 123599998877653
No 395
>PF04641 Rtf2: Rtf2 RING-finger
Probab=46.70 E-value=22 Score=36.07 Aligned_cols=36 Identities=14% Similarity=0.453 Sum_probs=32.1
Q ss_pred CccccccCcccccCceec-CCCCccchHHHHHHHhcC
Q 040749 273 HEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSN 308 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~ 308 (643)
..+.|+++++.+.+||+. .-|+.|....|-+|+...
T Consensus 33 ~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 33 RWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 468899999999999965 689999999999999864
No 396
>PF14353 CpXC: CpXC protein
Probab=46.62 E-value=13 Score=33.24 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=29.6
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCcCcccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKTRQTLA 320 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~ 320 (643)
+.+||-|+..+.-.+-..-.-.......++-++. ...+||.|+....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 3579999998886554332233445555555542 2357999987754
No 397
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=46.04 E-value=79 Score=35.49 Aligned_cols=98 Identities=18% Similarity=0.182 Sum_probs=64.4
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC--CHHHHH
Q 040749 527 GIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN--NSSFIL 604 (643)
Q Consensus 527 G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~--~~~~~~ 604 (643)
|.+..++.-+.+++..++..++.+|+.+..+-.-.....-.|.+..|.+-+.+..+.+|..|+.+|..+-.- ++++
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen-- 168 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN-- 168 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH--
Confidence 445555666666788889999999998877543333444457777777777777888999999999877532 3322
Q ss_pred HHHHCCcHHHHHHHhhcC-CHHHHHHHH
Q 040749 605 AALQYGVYEHLIQLTEGG-TSRAQRKAN 631 (643)
Q Consensus 605 ~~~~~g~i~~L~~ll~~g-~~~~k~~A~ 631 (643)
.+...|..++++. +.++|+.|.
T Consensus 169 -----~~~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 169 -----RIVNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred -----HHHHHHHHHHhcCcHHHHHHHHH
Confidence 2334555555544 556666554
No 398
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=45.59 E-value=1.4e+02 Score=30.71 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=49.7
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH--HHHHcCChHHHHHHh----c--------cCChhhHHHHHHH
Q 040749 485 SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA--RAIDAGIVLPLMNLL----E--------ERNLGMVDEALSI 550 (643)
Q Consensus 485 ~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~--~lv~~G~v~~Lv~lL----~--------~~~~~~~~~Al~~ 550 (643)
.-.+|+++.++.+.++..|..++.+|..+...-.... .+.+.|..+.+-+.+ . +.+..+...|..+
T Consensus 118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 3578999999999999999999999999876433322 255677655544333 2 2334566777777
Q ss_pred HHHHhC
Q 040749 551 LLLLAT 556 (643)
Q Consensus 551 L~~La~ 556 (643)
|..|+.
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 777744
No 399
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=45.54 E-value=5.2e+02 Score=29.60 Aligned_cols=206 Identities=20% Similarity=0.197 Sum_probs=103.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHH----HhcC---CcHHHHHhCCCCChHHHHHHHHHHHHhcCCc
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILI----ADCG---AIPPLVQLLPYPDSKILEHAVTAVLNLSIDE 435 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i----~~~g---~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~ 435 (643)
.+-.|++.|..-+.+.-......+..-. .....|..+ ...| ++..+..++.+....- ..|...|..+....
T Consensus 348 ~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~ 425 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHV 425 (618)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhc
Confidence 4666777777665554444443333221 112334333 3334 4556666666643222 23445555554322
Q ss_pred --chHHHHHhcCChHHHHHHhcC----CCHHHHHHHHHHHHhcccc---c-------cchhhhhccCChHHHHHHhc---
Q 040749 436 --SNKRLIAQQGAIPAIIEILQS----GSTEARENSAAALFSLSML---D-------ENKITIGLSDGIPPLVDLLQ--- 496 (643)
Q Consensus 436 --~~k~~i~~~g~i~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~---~-------~~k~~i~~~g~i~~Lv~lL~--- 496 (643)
.+.. .+..+..+++. .++.++..|.-++..|... . ..+........++.|...+.
T Consensus 426 ~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 499 (618)
T PF01347_consen 426 RRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAV 499 (618)
T ss_dssp ----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHH
T ss_pred CCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHh
Confidence 2222 23445555543 3456777677666666421 1 11122223456777777665
Q ss_pred -cCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHH
Q 040749 497 -NGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEER---NLGMVDEALSILLLLATHPEGRHKIGQLSFIET 572 (643)
Q Consensus 497 -~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~---~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~ 572 (643)
.++...+..++.||.|+-. ...++.|..++... +..++..|+.+|..++... ...+.+.
T Consensus 500 ~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-------~~~v~~~ 562 (618)
T PF01347_consen 500 SRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-------PEKVREI 562 (618)
T ss_dssp HTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------HHHHHHH
T ss_pred hccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-------cHHHHHH
Confidence 3456777888999999863 23567777777654 5566777777777664432 1134566
Q ss_pred HHHHHhcC--ChHHHHHHHHHHH
Q 040749 573 LVEYIREG--TPKNKECATAVLL 593 (643)
Q Consensus 573 Lv~lL~~~--s~~~~e~A~~~L~ 593 (643)
+..+..+. ++++|-.|..+|.
T Consensus 563 l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 563 LLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHH
T ss_pred HHHHhcCCCCChhHHHHHHHHHH
Confidence 77777754 3566666665553
No 400
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=45.43 E-value=3.2e+02 Score=30.99 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=63.5
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc---CCcch
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL---NQANK 520 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~---~~~n~ 520 (643)
.|.+..+++-+.+.+..+|..++.+|.-++..-..-......|.+..|..-+-+..+.++..|+.+|..+-. +++|+
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 577888888888889999999999998886432221122234566666666666778889999988876643 44443
Q ss_pred HHHHHcCChHHHHHHhcc-CChhhHHHHH
Q 040749 521 ARAIDAGIVLPLMNLLEE-RNLGMVDEAL 548 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al 548 (643)
. +..|+.+++. ++.+++..|+
T Consensus 170 ~-------~n~l~~~vqnDPS~EVRr~al 191 (885)
T COG5218 170 I-------VNLLKDIVQNDPSDEVRRLAL 191 (885)
T ss_pred H-------HHHHHHHHhcCcHHHHHHHHH
Confidence 2 2244555543 5555555443
No 401
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=44.35 E-value=17 Score=37.53 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=36.6
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHh-cCCCCCCCcCccc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFD-SNHRTCPKTRQTL 319 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~-~~~~~cP~~~~~l 319 (643)
.++-.|-||-+-.+=-..+||||..|..|--+.-. -....||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 45678999999888777889999999999765433 2345799997643
No 402
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=44.08 E-value=11 Score=27.79 Aligned_cols=13 Identities=23% Similarity=0.853 Sum_probs=11.5
Q ss_pred CCCCccccccCcc
Q 040749 270 VIPHEFLCPITLE 282 (643)
Q Consensus 270 ~~~~~f~CpIc~~ 282 (643)
++|+++.||+|..
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 6899999999974
No 403
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=44.06 E-value=1.7e+02 Score=34.00 Aligned_cols=206 Identities=17% Similarity=0.161 Sum_probs=107.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC---cchH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID---ESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~---~~~k 438 (643)
+...++...++++....++.|...+ ..++|-. ....++.|+.+.+.....-...++.+|-.|-++ ++-+
T Consensus 196 sd~k~l~siiSsGT~~DkitA~~Ll---vqesPvh-----~lk~lEtLls~c~KKsk~~a~~~l~~LkdlfI~~LLPdRK 267 (988)
T KOG2038|consen 196 SDAKWLYSIISSGTLTDKITAMTLL---VQESPVH-----NLKSLETLLSSCKKKSKRDALQALPALKDLFINGLLPDRK 267 (988)
T ss_pred hhHHHHHHHHhcCcchhhhHHHHHh---hcccchh-----HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCcchh
Confidence 3456777778888777676665433 3344422 222455666666555443334455555444332 1211
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 518 (643)
-.......+..|. +....-+..+.|. . +..-.+.-..+|..|..+-...-..++..|+.++++|..+.+
T Consensus 268 Lk~f~qrp~~~l~----~~~~~~k~Ll~Wy---f----E~~LK~ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kP 336 (988)
T KOG2038|consen 268 LKYFSQRPLLELT----NKRLRDKILLMWY---F----EHELKILYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKP 336 (988)
T ss_pred hHHHhhChhhhcc----ccccccceehHHH---H----HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCc
Confidence 1111111111000 1100011111111 1 011112223466777777666667899999999999876655
Q ss_pred chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHH-hCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHH
Q 040749 519 NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLL-ATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLEL 595 (643)
Q Consensus 519 n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L 595 (643)
.... .++..||.-|-++...+...|...|.+| +.+|..+..++ ..+.+++... +.+.+-+|+-.|..+
T Consensus 337 EqE~----~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi-----~EIer~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 337 EQEN----NLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVI-----DEIERLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred HHHH----HHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehH-----HHHHHHHcccCccccceeehhhhhhhh
Confidence 5433 2355677778778888888888777777 55776664443 3344444432 344555565555544
No 404
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=44.05 E-value=17 Score=43.69 Aligned_cols=46 Identities=13% Similarity=0.302 Sum_probs=36.2
Q ss_pred cccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
-.|.||++-.- +|.+. .||.-.||.|.+-=-++|+..||.|+.+..
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 47999998643 56654 488889999997666688899999987765
No 405
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=43.62 E-value=6e+02 Score=29.80 Aligned_cols=119 Identities=13% Similarity=0.079 Sum_probs=80.9
Q ss_pred cCCcHHHHHhCCCC--------ChHHHHHHHHHHHHhcC--Ccc-hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHh
Q 040749 403 CGAIPPLVQLLPYP--------DSKILEHAVTAVLNLSI--DES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFS 471 (643)
Q Consensus 403 ~g~i~~Lv~lL~~~--------d~~~~~~a~~~L~nLs~--~~~-~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~ 471 (643)
.|.++.++..|... ++.-.+.|++.+.++.. ... .-..+++.=.++.++-.++++..-.+..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 57888999988421 33445677777777754 222 23334455566777777888888899999999998
Q ss_pred ccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHH
Q 040749 472 LSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA 523 (643)
Q Consensus 472 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~l 523 (643)
++.+ .+..-.-..+.....+.+++.+..++..|+-||.-+-.+.....++
T Consensus 487 ~eeD--fkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~ 536 (970)
T COG5656 487 IEED--FKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKF 536 (970)
T ss_pred HHHh--cccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHH
Confidence 8533 3332233456677778888888889999999998887766544443
No 406
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=43.50 E-value=2.6e+02 Score=26.73 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=52.2
Q ss_pred CChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749 486 DGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP 558 (643)
Q Consensus 486 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 558 (643)
-.+|.+++=|++.....+..|...+..|... ...+..=+=...|.+|-.-|...++++...++.+|..|+...
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3556666666776777777787777777655 333333233567777888888899999999999999996654
No 407
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=43.28 E-value=3.7e+02 Score=30.94 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHhcCCcchHHHHH----hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhcc--CChHH
Q 040749 417 DSKILEHAVTAVLNLSIDESNKRLIA----QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLS--DGIPP 490 (643)
Q Consensus 417 d~~~~~~a~~~L~nLs~~~~~k~~i~----~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~ 490 (643)
..+.+--|+.+|.-+..+...-..+. ....+..++..++ +.+..+..++++|.|+-.++..+..+... -.+..
T Consensus 557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~ 635 (745)
T KOG0301|consen 557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDP 635 (745)
T ss_pred CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh
Confidence 34445555565555554433322222 2235555555554 55667788899999998876666655442 11222
Q ss_pred HHHHhccCC-hhhHHHHHHHHHHhcc--CCcchHHHHHcCChHHHHHHhcc---C--ChhhHHHHHHHHHHHhCChhhHH
Q 040749 491 LVDLLQNGT-IRGKKDAVTALFNLSL--NQANKARAIDAGIVLPLMNLLEE---R--NLGMVDEALSILLLLATHPEGRH 562 (643)
Q Consensus 491 Lv~lL~~~~-~~~~~~A~~aL~nLs~--~~~n~~~lv~~G~v~~Lv~lL~~---~--~~~~~~~Al~~L~~La~~~~~~~ 562 (643)
++.. ++.+ ...+...++...|++. ...+- +.|..+.|...+.. + +-+..-..+-+|.+|+..+.+..
T Consensus 636 ~~~~-~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~ 710 (745)
T KOG0301|consen 636 VIEA-SSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVI 710 (745)
T ss_pred hhhh-hcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHH
Confidence 2222 2333 3344444444445542 22221 14555555555433 2 22233455677788888888888
Q ss_pred HhhcCCcHHHHHHHHhc-CC-hHHHHHHHH
Q 040749 563 KIGQLSFIETLVEYIRE-GT-PKNKECATA 590 (643)
Q Consensus 563 ~i~~~g~i~~Lv~lL~~-~s-~~~~e~A~~ 590 (643)
++.+.-.+..+++.+++ .+ +..+..|-.
T Consensus 711 ~~A~~~~v~sia~~~~~~~~~~~~k~~a~~ 740 (745)
T KOG0301|consen 711 QLAKNRSVDSIAKKLKEAVSNPSGKNIARD 740 (745)
T ss_pred HHHHhcCHHHHHHHHHHhccCchhhHHHHH
Confidence 88877778888888875 23 444444433
No 408
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=42.12 E-value=5.7e+02 Score=29.06 Aligned_cols=90 Identities=21% Similarity=0.161 Sum_probs=49.1
Q ss_pred ChHHHHHHhcC----CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc-c--CChhhHHHHHHHHHHhccCCc
Q 040749 446 AIPAIIEILQS----GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ-N--GTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 446 ~i~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~--~~~~~~~~A~~aL~nLs~~~~ 518 (643)
.++.+...|.. ++.+-+.....+|.|+.. ...++.|...+. + -+...+..|+.||..++...+
T Consensus 443 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p 512 (574)
T smart00638 443 LLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP 512 (574)
T ss_pred HHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc
Confidence 44555544432 233334445555555532 345666666665 2 245788889999988764333
Q ss_pred chHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHH
Q 040749 519 NKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILL 552 (643)
Q Consensus 519 n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~ 552 (643)
.. +-+.|+.++.+ .+.+++..|+.+|.
T Consensus 513 ~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 513 RK-------VQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred hH-------HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 32 23456667655 44555555555444
No 409
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=41.98 E-value=71 Score=36.53 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=33.7
Q ss_pred HHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 040749 491 LVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552 (643)
Q Consensus 491 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~ 552 (643)
..+-+++.-...+..+..++.....+-+... +...++|.++.+.-+.+..++..|..++.
T Consensus 452 ftralkdpf~paR~a~v~~l~at~~~~~~~~--va~kIlp~l~pl~vd~e~~vr~~a~~~i~ 511 (690)
T KOG1243|consen 452 FTRALKDPFVPARKAGVLALAATQEYFDQSE--VANKILPSLVPLTVDPEKTVRDTAEKAIR 511 (690)
T ss_pred hhhhhcCCCCCchhhhhHHHhhcccccchhh--hhhhccccccccccCcccchhhHHHHHHH
Confidence 3334455555666777777765554433322 33446677777766666666666654443
No 410
>PLN02195 cellulose synthase A
Probab=41.56 E-value=20 Score=42.67 Aligned_cols=45 Identities=7% Similarity=0.212 Sum_probs=35.6
Q ss_pred ccccCcccc-----cCceec--CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 276 LCPITLEIM-----RDPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 276 ~CpIc~~~m-----~dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
.|.||++-. -+|.+. .||.-.||.|.+-=-++|+..||.|+.+..
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 599998843 367665 588889999996655678889999987766
No 411
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=40.14 E-value=20 Score=42.88 Aligned_cols=47 Identities=11% Similarity=0.239 Sum_probs=37.0
Q ss_pred ccccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 274 EFLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 274 ~f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
.-.|.||++-.- +|.+. .||.-.||.|.+-=.++|+..||.|+.+..
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 356999998643 67664 488889999997666688889999988766
No 412
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.03 E-value=1e+02 Score=34.15 Aligned_cols=69 Identities=10% Similarity=0.064 Sum_probs=56.2
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHH-HHHHCCcHHHHHHHhhcC--CHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFIL-AALQYGVYEHLIQLTEGG--TSRAQRKANALLQL 636 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~-~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~ 636 (643)
.++..|.+.+.+.++.++..|+.+|-.+..+++.... .+.+.+++.-++.+..+. +..+|+++..+|..
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 4677888888888899999999988877777665544 677888999999888766 67899999888864
No 413
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=39.90 E-value=31 Score=29.83 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhH
Q 040749 504 KDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMV 544 (643)
Q Consensus 504 ~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~ 544 (643)
...+..+..|+..++--..+++.|+++.|+.+|.+.+.++.
T Consensus 64 d~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIa 104 (108)
T PF08216_consen 64 DEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIA 104 (108)
T ss_pred HHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCccee
Confidence 35567788889999888889999999999999988776654
No 414
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.78 E-value=6.6e+02 Score=29.14 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=33.3
Q ss_pred hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
-.-|..+.+...+....++..+-.|..-+.|+.+|..+++
T Consensus 245 TsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlAS 284 (1082)
T KOG1410|consen 245 TSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLAS 284 (1082)
T ss_pred cHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHH
Confidence 3457777788889999999988888888999999998875
No 415
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=39.25 E-value=1.5e+02 Score=25.50 Aligned_cols=70 Identities=16% Similarity=0.087 Sum_probs=49.8
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHh---h---cCCHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEHLIQLT---E---GGTSRAQRKANALLQLI 637 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll---~---~g~~~~k~~A~~lL~~L 637 (643)
.++..|.+-|.+.++..+..|+.+|-.++.++++. ...+.....+..++.+. . ..+..+|.++..++...
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 35667777788889999999999999999887644 44454555555554421 1 12678999999988764
No 416
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.65 E-value=5.9e+02 Score=28.27 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHH-hCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQ-LLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
+.+..+....++++...+.-|+..|.+.+..-|+........ .+..++. +....+.+++..++.+|.-+...-.++..
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 456666677777888888999999999996645433332222 3344444 44445788998898888877654344332
Q ss_pred HHhcCCh---HHHHHHhcCCCHHHHHHHHHHHHhccccccchhh--hhc--cCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749 441 IAQQGAI---PAIIEILQSGSTEARENSAAALFSLSMLDENKIT--IGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNL 513 (643)
Q Consensus 441 i~~~g~i---~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~--i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 513 (643)
. .+.+ -.+..++.+.+++.+.+|...+..|+.....+.. +.+ .+...+|+-.+.+.++.+- .|+++....
T Consensus 337 ~--~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va-~ACr~~~~~ 413 (533)
T KOG2032|consen 337 E--SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVA-RACRSELRT 413 (533)
T ss_pred h--hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHH-HHHHHHHHh
Confidence 2 2333 3445567788889999888888888755433322 222 2233344444455555333 355555544
Q ss_pred c
Q 040749 514 S 514 (643)
Q Consensus 514 s 514 (643)
+
T Consensus 414 c 414 (533)
T KOG2032|consen 414 C 414 (533)
T ss_pred c
Confidence 4
No 417
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=38.59 E-value=13 Score=26.96 Aligned_cols=13 Identities=23% Similarity=0.853 Sum_probs=8.5
Q ss_pred CCCCccccccCcc
Q 040749 270 VIPHEFLCPITLE 282 (643)
Q Consensus 270 ~~~~~f~CpIc~~ 282 (643)
++|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 6899999999974
No 418
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.20 E-value=1.3e+02 Score=33.70 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=59.0
Q ss_pred hHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcch
Q 040749 360 QKEEIVSLVEQ-LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~-L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~ 437 (643)
..+.+..++.. .+..+.++++.|+-+|...+..++. .++..+.+|+. .++-++...+-+|+-.+...-.
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 34566666665 5667777888888888777765543 55666666654 3666666666666544432222
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 473 (643)
+. ++..|-.+....+.-+|+.|+-++..+.
T Consensus 620 ~~------a~diL~~L~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 620 KV------ATDILEALMYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred HH------HHHHHHHHhhCcHHHHHHHHHHHHHHHH
Confidence 22 2333344445666777887777766654
No 419
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.19 E-value=35 Score=26.81 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=28.0
Q ss_pred CCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHH
Q 040749 292 SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330 (643)
Q Consensus 292 cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l 330 (643)
--+|||..|-+..+ +..||-|+-.+...-+.|--.|
T Consensus 27 fEcTFCadCae~~l---~g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 27 FECTFCADCAENRL---HGLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EeeehhHhHHHHhh---cCcCCCCCchhhcCcCChHHHH
Confidence 35899999999877 3579999998887777775433
No 420
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=38.06 E-value=18 Score=36.92 Aligned_cols=25 Identities=16% Similarity=0.506 Sum_probs=17.6
Q ss_pred ccccccCccccc--C-ceecCCCCccch
Q 040749 274 EFLCPITLEIMR--D-PVIIASGQTFER 298 (643)
Q Consensus 274 ~f~CpIc~~~m~--d-Pv~~~cg~ty~r 298 (643)
.|.||+|...|. + ...-+.||+|+.
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~ 29 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDC 29 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCcc
Confidence 389999999995 2 233356788865
No 421
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=37.55 E-value=3.5e+02 Score=25.82 Aligned_cols=108 Identities=19% Similarity=0.237 Sum_probs=65.4
Q ss_pred hHHHHH-HhccCChhhHHHHHHHHHHhccCCcchHHHHH-----cCC-----------h----HHHHHHhcc-CChhhHH
Q 040749 488 IPPLVD-LLQNGTIRGKKDAVTALFNLSLNQANKARAID-----AGI-----------V----LPLMNLLEE-RNLGMVD 545 (643)
Q Consensus 488 i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-----~G~-----------v----~~Lv~lL~~-~~~~~~~ 545 (643)
-+.|+. ++.+.+++++..|+.+|..|-.....--...+ .+. + ..|+..|.. .+..+..
T Consensus 41 ~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~ 120 (182)
T PF13251_consen 41 TPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLT 120 (182)
T ss_pred CcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHH
Confidence 344444 45778899999999999888654322211221 011 1 223344433 4566777
Q ss_pred HHHHHHHHHhCC-hhhHHHhhcCCcH----HHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 546 EALSILLLLATH-PEGRHKIGQLSFI----ETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 546 ~Al~~L~~La~~-~~~~~~i~~~g~i----~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
..+.+|..|..+ |=.|- ..|.+ ..+..++.+.++.++..++.++..+.+.
T Consensus 121 q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 121 QLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888899888773 22221 23444 4455566678888999998888877654
No 422
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=37.09 E-value=15 Score=33.86 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=16.9
Q ss_pred CccccccCcccccCceecCC
Q 040749 273 HEFLCPITLEIMRDPVIIAS 292 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~c 292 (643)
++.+||||++.--+.|.+-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 46789999999999998754
No 423
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=36.89 E-value=5.1e+02 Score=27.04 Aligned_cols=207 Identities=14% Similarity=0.077 Sum_probs=131.2
Q ss_pred HHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-chH----HHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749 400 IADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SNK----RLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLS 473 (643)
Q Consensus 400 i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~k----~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls 473 (643)
+.++|..+.|+.-|...+-+.+..++....|+-..+ .++ .-+. ....+..++.--.. .++..-.+...|....
T Consensus 75 f~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlrEci 153 (342)
T KOG1566|consen 75 FYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLRECI 153 (342)
T ss_pred HHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHHHHH
Confidence 456789999999998888888888888887775422 112 1121 22233333332111 3555555555565555
Q ss_pred ccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCC----hHHHHHHhccCChhhHHHHH
Q 040749 474 MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGI----VLPLMNLLEERNLGMVDEAL 548 (643)
Q Consensus 474 ~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~----v~~Lv~lL~~~~~~~~~~Al 548 (643)
..+.....|..+..+......++.++-++..+|..+...+.. +......+...+. .+.--.++.+.+--.+..++
T Consensus 154 rhe~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~ 233 (342)
T KOG1566|consen 154 RHEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSL 233 (342)
T ss_pred hhHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHH
Confidence 555555666667777777778787777777788777776654 3333344444333 22244455555555677888
Q ss_pred HHHHHHhCChhhHHH----hhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC--CHHHHHHHH
Q 040749 549 SILLLLATHPEGRHK----IGQLSFIETLVEYIREGTPKNKECATAVLLELGAN--NSSFILAAL 607 (643)
Q Consensus 549 ~~L~~La~~~~~~~~----i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~--~~~~~~~~~ 607 (643)
.+|..+-....+... +.+...+..++.+|++.+...+-.|..+.+-...+ .++-+..++
T Consensus 234 kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL 298 (342)
T KOG1566|consen 234 KLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDIL 298 (342)
T ss_pred HhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHH
Confidence 888888665444433 34457789999999999999999999998877654 233444443
No 424
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=36.47 E-value=1.6e+02 Score=28.07 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhcCCcchHH------HHH------hcCChHHHHH-HhcCCCHHHHHHHHHHHHhccccccchhhhhc--
Q 040749 420 ILEHAVTAVLNLSIDESNKR------LIA------QQGAIPAIIE-ILQSGSTEARENSAAALFSLSMLDENKITIGL-- 484 (643)
Q Consensus 420 ~~~~a~~~L~nLs~~~~~k~------~i~------~~g~i~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-- 484 (643)
+|..|+.+|..+...-+.|. .+. ....-+.|+. ++.++++.+|..|+.+|..|-.....--...+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 56777777777776522222 222 1223344444 56677899999999999887533211000111
Q ss_pred ---cCCh---------------HHHHHHhcc-CChhhHHHHHHHHHHhccCCc-chHHHHHcCChHH----HHHHhccCC
Q 040749 485 ---SDGI---------------PPLVDLLQN-GTIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLP----LMNLLEERN 540 (643)
Q Consensus 485 ---~g~i---------------~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~----Lv~lL~~~~ 540 (643)
.+.+ ..|+..|.. .+.......+.+|..|....+ +|- ..|.++. +..++.+.|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcCC
Confidence 1111 234444443 356667777888887765433 222 2344444 444555688
Q ss_pred hhhHHHHHHHHHHHhCCh
Q 040749 541 LGMVDEALSILLLLATHP 558 (643)
Q Consensus 541 ~~~~~~Al~~L~~La~~~ 558 (643)
.+++..++.++..|.+..
T Consensus 159 ~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CcHHHHHHHHHHHHHcCC
Confidence 899999999998887643
No 425
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.32 E-value=26 Score=38.61 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCccccccCcccccC-ceecCCCCccchHHHHHHHhc
Q 040749 272 PHEFLCPITLEIMRD-PVIIASGQTFERESVQKWFDS 307 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-Pv~~~cg~ty~r~~I~~~~~~ 307 (643)
.....|.||.+-..+ .+.+.|||-||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456899999998885 666799999999999999874
No 426
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=35.71 E-value=2.2e+02 Score=24.49 Aligned_cols=71 Identities=14% Similarity=0.115 Sum_probs=54.3
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
..+..+.+.+....+.-+-.++.++-.++.+..............+.+.......++..|.+...++..-.
T Consensus 37 ~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~ 107 (114)
T cd03562 37 EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWE 107 (114)
T ss_pred HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 45667777888888888999999999999886555444445555777778888889999999888876543
No 427
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=34.93 E-value=7 Score=40.41 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=21.2
Q ss_pred CccccccCcccccCceecCC---CC--ccchHHHHHHHhcCCCCCCCcCcc
Q 040749 273 HEFLCPITLEIMRDPVIIAS---GQ--TFERESVQKWFDSNHRTCPKTRQT 318 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~c---g~--ty~r~~I~~~~~~~~~~cP~~~~~ 318 (643)
..-.||+|+..-.=-++..- |+ -+|..|=.+|--.. ..||.|+..
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R-~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR-IKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--T-TS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC-CCCcCCCCC
Confidence 34689999987665555544 64 45999999996553 479999764
No 428
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=34.75 E-value=16 Score=33.49 Aligned_cols=27 Identities=30% Similarity=0.629 Sum_probs=19.2
Q ss_pred CCCCccchHHHHHHHhc----------CCCCCCCcCcccccC
Q 040749 291 ASGQTFERESVQKWFDS----------NHRTCPKTRQTLAHL 322 (643)
Q Consensus 291 ~cg~ty~r~~I~~~~~~----------~~~~cP~~~~~l~~~ 322 (643)
.+||+| +.||.+ |--+||.|+..-..+
T Consensus 9 ~~gH~F-----EgWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K 45 (148)
T PF06676_consen 9 ENGHEF-----EGWFRSSAAFDRQQARGLVSCPVCGSTEVSK 45 (148)
T ss_pred CCCCcc-----ceecCCHHHHHHHHHcCCccCCCCCCCeEee
Confidence 468999 458874 557899998764433
No 429
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=34.51 E-value=55 Score=30.10 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=20.3
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSL 515 (643)
Q Consensus 487 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 515 (643)
-|.+|+++|.+.+......|+.+|.+-..
T Consensus 95 NV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 NVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp THHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred cHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 37899999988888888899999987543
No 430
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=34.29 E-value=2.3e+02 Score=31.49 Aligned_cols=110 Identities=16% Similarity=0.242 Sum_probs=65.0
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh----HHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCC-
Q 040749 526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG----RHKIGQLSFIETLVEYIR-EGTPKNKECATAVLLELGANN- 599 (643)
Q Consensus 526 ~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~----~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~- 599 (643)
.+.|+.+++++. .+.+.+--+.++. +..++. .+.+.+.+.|+.|+.+|. ..++..+.+|+..|..+..-+
T Consensus 20 ~~~v~~llkHI~--~~~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 20 PNFVDNLLKHID--TPAIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred ccHHHHHHHhcC--CcHHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456666666663 2334443344433 222233 334456899999999997 346788999998887764321
Q ss_pred ------------HHHHHHHHHCCcHHHHHHHhh--cCCHHHHHHHHHHHHHHHh
Q 040749 600 ------------SSFILAALQYGVYEHLIQLTE--GGTSRAQRKANALLQLISK 639 (643)
Q Consensus 600 ------------~~~~~~~~~~g~i~~L~~ll~--~g~~~~k~~A~~lL~~L~~ 639 (643)
......+.....+..|+..+- .++..+--...-++..+++
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRk 149 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRK 149 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHh
Confidence 123444556778888887776 3444344444445556554
No 431
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.95 E-value=2.1e+02 Score=31.71 Aligned_cols=72 Identities=19% Similarity=0.151 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhc
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE-NRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLS 432 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs 432 (643)
.+++..+.+++.+.++.+|..|+..|-.+.++-.. ....|++.++++-+|.+.+.. +..+|+.++..|-...
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 47899999999998889999999988888875444 344788899999999988754 7789999998887653
No 432
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=33.84 E-value=2.2e+02 Score=25.88 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHH-HHHhCCC---CChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPP-LVQLLPY---PDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~~---~d~~~~~~a~~~L~nLs~ 433 (643)
.+.++..+-+.|.+ .++.++..|+..|-.+.++. ......|+..+++.. |++++.. .+..++...+..+...+.
T Consensus 36 ~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 36 PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 35789999999984 68999999999999988754 356677888889987 9998863 245788888888888764
No 433
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.28 E-value=4.4e+02 Score=33.43 Aligned_cols=141 Identities=12% Similarity=0.091 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~ 440 (643)
..+..++..|.++....|.+|+++|..+..-++.... ...+-..+..-+......+++.|+..++.... +++.-.+
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence 5677888889989999999999999999966554321 11112222333444567899999999986443 3333222
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc---cCChhhHHHHHHHHHHhcc
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ---NGTIRGKKDAVTALFNLSL 515 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~nLs~ 515 (643)
+ ...|+.-+.....-+|..+..++..++.....=..+ ...++++|+ +....+++.+..++.++-.
T Consensus 893 y-----Y~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 893 Y-----YDQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred H-----HHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 2 334455555566778888999988887443221111 223333332 1122255666666666544
No 434
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=32.97 E-value=3.6e+02 Score=33.47 Aligned_cols=233 Identities=14% Similarity=0.087 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCCcHHHH--------HhCCC-CChHHHHHHHHHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE--NRILIADCGAIPPLV--------QLLPY-PDSKILEHAVTAVL 429 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv--------~lL~~-~d~~~~~~a~~~L~ 429 (643)
...++.|+..+-+.+|++|.-++-.++.+.+.+.. ++.. .+.-++..+. .+... --..+++..+++|.
T Consensus 76 ~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~-led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 76 LSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYEL-LEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHH-HHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 45677888888888888888887777777654321 1211 1111111111 11110 02357788888887
Q ss_pred HhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh--ccCChHHHHHHhccCChhhHHHHH
Q 040749 430 NLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG--LSDGIPPLVDLLQNGTIRGKKDAV 507 (643)
Q Consensus 430 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~--~~g~i~~Lv~lL~~~~~~~~~~A~ 507 (643)
.+..+-..... ...+..+..++....++++.-.+-.+.+.-.. .+..+. -.-+++..+.-|.+.+..++..|+
T Consensus 155 ~~l~~~~~s~~---~~~~~il~q~~~q~~w~ir~Ggll~iky~~ai--r~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa 229 (1549)
T KOG0392|consen 155 AYLKHMDESLI---KETLDILLQMLRQPNWEIRHGGLLGIKYNVAI--RQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAA 229 (1549)
T ss_pred HHHHhhhhHhh---HHHHHHHHHHHcCcchhheechHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhcchHHHHHHH
Confidence 77654322111 12345556666555444443333222221110 000011 123456666667777888888888
Q ss_pred HHHHHhccCCcchHHHHHcCChHHHHHHhccCCh--hhHHHHHHHHHHHhCChhhHHHh----hcCCcHHHHHHHHhcCC
Q 040749 508 TALFNLSLNQANKARAIDAGIVLPLMNLLEERNL--GMVDEALSILLLLATHPEGRHKI----GQLSFIETLVEYIREGT 581 (643)
Q Consensus 508 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~--~~~~~Al~~L~~La~~~~~~~~i----~~~g~i~~Lv~lL~~~s 581 (643)
..|.-..+...+...---.-++..+..++..-+. .-.......|..++...+..... ...|.++.+...+++.=
T Consensus 230 ~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~i 309 (1549)
T KOG0392|consen 230 QFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHTI 309 (1549)
T ss_pred HHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHHH
Confidence 7776655433111110012344444444433221 11222234444555544322221 12478888888888766
Q ss_pred hHHHHHHHHHHHHHhcCC
Q 040749 582 PKNKECATAVLLELGANN 599 (643)
Q Consensus 582 ~~~~e~A~~~L~~L~~~~ 599 (643)
..++..+...+..+.+.+
T Consensus 310 ~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 310 SSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 778888888888877544
No 435
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=32.59 E-value=25 Score=32.93 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=17.9
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQT 318 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~ 318 (643)
.+.||+|+.+..+ . ....||.|+.+
T Consensus 134 ~~vC~vCGy~~~g--e------------------~P~~CPiCga~ 158 (166)
T COG1592 134 VWVCPVCGYTHEG--E------------------APEVCPICGAP 158 (166)
T ss_pred EEEcCCCCCcccC--C------------------CCCcCCCCCCh
Confidence 6899999766665 1 23579999865
No 436
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.54 E-value=7.5e+02 Score=28.86 Aligned_cols=143 Identities=14% Similarity=0.167 Sum_probs=84.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccc--cccc----hhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749 448 PAIIEILQSGSTEARENSAAALFSLSM--LDEN----KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 448 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~--~~~~----k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
|.|-+-|+..+.++|.+|+..++++-- +++. +..+.+ .-..-|..+|+++-+.++-.|..-+.... ..-+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~---s~fW 252 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKIT---SKFW 252 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHH---HHHH
Confidence 455667777889999999999999752 2222 222222 33567788888887777766654443332 1123
Q ss_pred HHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 522 RAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
.++-...+..|+..+.+ ...+++.....-|-.+..+|..-..+- -++|.+-..|.+.+.++|-.++.+|..+=
T Consensus 253 e~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le--~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 253 EMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLE--QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHH--HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 33333444444444332 334555556666666666653332221 13445555667788999999999988773
No 437
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=32.36 E-value=4.4e+02 Score=26.75 Aligned_cols=60 Identities=20% Similarity=0.253 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~ 433 (643)
+.+..|.+.|...+++.+ .+...++.. .+++...||.|+.. .++..+-..++..|.+|..
T Consensus 13 ~~LkdL~r~lr~dd~~~~-~v~r~lg~~---------~iv~~DLiPiL~~~--~~~~~l~~~~l~LLV~LT~ 72 (266)
T PF04821_consen 13 ECLKDLKRFLRRDDEDQR-DVRRQLGEW---------NIVQKDLIPILISY--KDDDKLFLACLRLLVNLTW 72 (266)
T ss_pred HHHHHHHHHHHHhCcchH-HHHHHHHHh---------chhhhhHHHHHHhc--cCchHHHHHHHHHHHHhCC
Confidence 456666666665444322 222222211 12333344444443 2267788888888888875
No 438
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=32.24 E-value=7.3e+02 Score=27.44 Aligned_cols=108 Identities=12% Similarity=0.075 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHH---H-HhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHH
Q 040749 377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPL---V-QLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451 (643)
Q Consensus 377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~L---v-~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv 451 (643)
..+.+|++.|+......+- ..|+.+ . .++..+ ..++|..+...|..+...+..+......-....+
T Consensus 5 ~~R~~a~~~l~~~i~~~~~--------~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I- 75 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPL--------SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDI- 75 (464)
T ss_pred HHHHHHHHHHHHHHHhCCc--------hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHH-
Confidence 4456666666655533221 122222 2 244443 4578888888888887755443222222222222
Q ss_pred HHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc
Q 040749 452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ 496 (643)
Q Consensus 452 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~ 496 (643)
-....++--..-..+|..|+.+...- ...+.+..|.|...|.
T Consensus 76 --~~~~~~~d~~~~l~aL~~LT~~Grdi-~~~~~~i~~~L~~wl~ 117 (464)
T PF11864_consen 76 --SDPSNDDDFDLRLEALIALTDNGRDI-DFFEYEIGPFLLSWLE 117 (464)
T ss_pred --hcCCCchhHHHHHHHHHHHHcCCcCc-hhcccchHHHHHHHHH
Confidence 11222322233344555555332222 2235666777776664
No 439
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=31.49 E-value=4.2e+02 Score=28.44 Aligned_cols=213 Identities=15% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHh---cCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHH
Q 040749 376 LEVQKEAVRKIRLLSKENPENRILIAD---CGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451 (643)
Q Consensus 376 ~~~~~~A~~~L~~L~~~~~~~r~~i~~---~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv 451 (643)
+.++..++..+...+....+.-..+.. .+....|.+..... ...+...|+..|..++.....+..+...+.+..|+
T Consensus 110 ~kvK~~i~~~~~ly~~kY~e~f~~~l~~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 110 EKVKAWICENLNLYAEKYEEEFEPFLPTFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Q ss_pred HHh----------------------------cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHH---HhccCCh
Q 040749 452 EIL----------------------------QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVD---LLQNGTI 500 (643)
Q Consensus 452 ~lL----------------------------~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~---lL~~~~~ 500 (643)
+-+ .+.....|..|+..|..|+..-.....-.-.+.+..++. --.+.++
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w 269 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNW 269 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-H
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccH
Q ss_pred hhHHHHHHHHHHhccCCc-------------chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcC
Q 040749 501 RGKKDAVTALFNLSLNQA-------------NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQL 567 (643)
Q Consensus 501 ~~~~~A~~aL~nLs~~~~-------------n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~ 567 (643)
+.+..|+..+..|+.... +...+...-++|.|. -=.+..+-++..|+..+...-..-......
T Consensus 270 ~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~--- 345 (370)
T PF08506_consen 270 RSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLL--- 345 (370)
T ss_dssp HHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHH---
T ss_pred HHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHH---
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVL 592 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L 592 (643)
++++.++..|.+.+.-++..|+.++
T Consensus 346 ~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 346 QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhhhhhC
No 440
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=31.34 E-value=2.7e+02 Score=25.29 Aligned_cols=72 Identities=18% Similarity=0.153 Sum_probs=53.5
Q ss_pred CcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHH-HHHHhhc---CCHHHHHHHHHHHHHHHh
Q 040749 568 SFIETLVEYIRE-GTPKNKECATAVLLELGANNSS-FILAALQYGVYEH-LIQLTEG---GTSRAQRKANALLQLISK 639 (643)
Q Consensus 568 g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~-L~~ll~~---g~~~~k~~A~~lL~~L~~ 639 (643)
.++..|-+-|.. .++.+...|+.+|-.+..+.+. ...++.....+.- |+.++.. ....++.++..+++....
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 456677777764 5788999999999988887664 4555666788886 8888863 245889999988887653
No 441
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=31.28 E-value=3.4e+02 Score=23.30 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCC------CCChHHHHHHHHHHHHh
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLP------YPDSKILEHAVTAVLNL 431 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~------~~d~~~~~~a~~~L~nL 431 (643)
...+..+...|.+.++.++..|+..|..+.++. +.....+....++..++++.. ..+..++..+...+..+
T Consensus 36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 467888999999999999999999999999765 355566666666666655311 12567788877776554
No 442
>PLN02400 cellulose synthase
Probab=31.08 E-value=29 Score=41.77 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=36.0
Q ss_pred cccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
-.|.||++-.- +|.+. .||.-.||.|.+-=-++|+..||.|+.+..
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 47999998643 56654 488889999996555678889999987766
No 443
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=30.42 E-value=27 Score=21.87 Aligned_cols=8 Identities=25% Similarity=0.434 Sum_probs=4.2
Q ss_pred cccCcccc
Q 040749 277 CPITLEIM 284 (643)
Q Consensus 277 CpIc~~~m 284 (643)
||-|....
T Consensus 3 CP~C~~~V 10 (26)
T PF10571_consen 3 CPECGAEV 10 (26)
T ss_pred CCCCcCCc
Confidence 55555544
No 444
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.27 E-value=25 Score=28.94 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=11.9
Q ss_pred ccchHHHHHHHhc
Q 040749 295 TFERESVQKWFDS 307 (643)
Q Consensus 295 ty~r~~I~~~~~~ 307 (643)
-|||.|+..|+.+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 6999999999985
No 445
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=30.09 E-value=29 Score=25.98 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=20.3
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.|.||.|..-+.=|-... |. .-.||.|+..+.-
T Consensus 2 ~~~CP~CG~~iev~~~~~-Ge--------------iV~Cp~CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEIELENPEL-GE--------------LVICDECGAELEV 34 (54)
T ss_pred ccCCCCCCCEEecCCCcc-CC--------------EEeCCCCCCEEEE
Confidence 378999998765332211 32 2268888877654
No 446
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.96 E-value=7.9e+02 Score=27.15 Aligned_cols=256 Identities=14% Similarity=0.124 Sum_probs=121.4
Q ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCch----hHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCc
Q 040749 363 EIVSLVEQLSS--SKLEVQKEAVRKIRLLSKENPE----NRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDE 435 (643)
Q Consensus 363 ~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~----~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~ 435 (643)
.+-.+.+.|-. .+.+.|..+..-+..+.+.... .|..+ .+.+. +..++.-..-+.+|..|+.+.
T Consensus 28 ~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~f---------F~~I~~~~~~~d~~~~l~aL~~LT~~G 98 (464)
T PF11864_consen 28 EIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEF---------FRDISDPSNDDDFDLRLEALIALTDNG 98 (464)
T ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHH---------HHHHhcCCCchhHHHHHHHHHHHHcCC
Confidence 45555555543 3456777777777777755432 22222 22223 222322334455566666544
Q ss_pred chHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc-hhhh-hccC----ChHHHHHHhccC----ChhhHHH
Q 040749 436 SNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN-KITI-GLSD----GIPPLVDLLQNG----TIRGKKD 505 (643)
Q Consensus 436 ~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i-~~~g----~i~~Lv~lL~~~----~~~~~~~ 505 (643)
.+-.. .+.+..+.|...|..--..++ .+-.....-+..+.. ...+ .+.+ .+..++++++-. +......
T Consensus 99 rdi~~-~~~~i~~~L~~wl~~~~~~~~-~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~ 176 (464)
T PF11864_consen 99 RDIDF-FEYEIGPFLLSWLEPSYQAAR-SARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISS 176 (464)
T ss_pred cCchh-cccchHHHHHHHHHHHHHHHH-HHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 44322 367777888777743210000 000000000111110 0000 1222 333444444432 2233333
Q ss_pred HHHHHHHhccCCcchH----------HHHHcCCh-----HHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCC
Q 040749 506 AVTALFNLSLNQANKA----------RAIDAGIV-----LPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLS 568 (643)
Q Consensus 506 A~~aL~nLs~~~~n~~----------~lv~~G~v-----~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g 568 (643)
.+..+..+|....+.. .++.-|.+ +.++..|.+ +..+....+-.++.||+.+.-+. .
T Consensus 177 lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~------~ 250 (464)
T PF11864_consen 177 LVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH------S 250 (464)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH------H
Confidence 4444445543332221 12333433 345555544 33356667778888888765443 3
Q ss_pred cHHHHHHHHhcC------ChHHHHHHHHHHHHHhcCCHHHHHHHHH-C--CcHHHHHHHhhcCCHHHHHHHHHHHH
Q 040749 569 FIETLVEYIREG------TPKNKECATAVLLELGANNSSFILAALQ-Y--GVYEHLIQLTEGGTSRAQRKANALLQ 635 (643)
Q Consensus 569 ~i~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~~~~~~~~~~~-~--g~i~~L~~ll~~g~~~~k~~A~~lL~ 635 (643)
.+..|..+|.+. +...-.-|+.+|..+..+.++.....+. . -+++.|...++.+++++--....++.
T Consensus 251 ~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~ 326 (464)
T PF11864_consen 251 AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLIN 326 (464)
T ss_pred HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHH
Confidence 467788888422 2344557888887766554322221111 2 27888888888777665444444333
No 447
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=29.87 E-value=9.3e+02 Score=28.34 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhc-C----CCHHHH---HHHHHHHHHhhc--cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHH
Q 040749 361 KEEIVSLVEQLS-S----SKLEVQ---KEAVRKIRLLSK--ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430 (643)
Q Consensus 361 ~~~i~~Lv~~L~-s----~~~~~~---~~A~~~L~~L~~--~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~n 430 (643)
.+.+++++.-|. + .+.+.- ..|++.+.++.. ..+.--+-+.+.=.++.++..++++.--.+..|+..+..
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~ 486 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIST 486 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHH
Confidence 356777777772 1 122222 334444443332 112222233333356666667777777778888888888
Q ss_pred hcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHH
Q 040749 431 LSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDL 494 (643)
Q Consensus 431 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~l 494 (643)
++.+=..... -..+.......+++++-.++..||-+|.-+-.++.....+.+ ++.+..|+.+
T Consensus 487 ~eeDfkd~~i--ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsL 550 (970)
T COG5656 487 IEEDFKDNGI--LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSL 550 (970)
T ss_pred HHHhcccchH--HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHh
Confidence 8543222222 234566677777777766777777777766555444333332 3444444444
No 448
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=29.87 E-value=43 Score=40.63 Aligned_cols=41 Identities=29% Similarity=0.646 Sum_probs=28.2
Q ss_pred CCCCccccccCc--ccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 270 VIPHEFLCPITL--EIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 270 ~~~~~f~CpIc~--~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
++|.++.||-|. +...|+-+ |.-|+ -...+||.|+.++...
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~sv---gsGfD---------LpdK~CPkCg~pl~kD 952 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDGSV---GSGFD---------LPDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCccccCCCCceeeeecCCCc---CCCCC---------CCCCCCCcCCCccccC
Confidence 578899999995 45555532 33343 3467899999998753
No 449
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=29.69 E-value=39 Score=39.31 Aligned_cols=45 Identities=24% Similarity=0.549 Sum_probs=35.3
Q ss_pred CccccccCccccc--Cceec--CCCCccchHHHHHHHhc------CCCCCCCcCc
Q 040749 273 HEFLCPITLEIMR--DPVII--ASGQTFERESVQKWFDS------NHRTCPKTRQ 317 (643)
Q Consensus 273 ~~f~CpIc~~~m~--dPv~~--~cg~ty~r~~I~~~~~~------~~~~cP~~~~ 317 (643)
..+.|-||.+.|. +||-- .|-|.|...||++|-.. ..+.||.|..
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3478999999996 56542 46689999999999874 4568999973
No 450
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=29.57 E-value=5.1e+02 Score=27.70 Aligned_cols=178 Identities=17% Similarity=0.098 Sum_probs=94.4
Q ss_pred CCCCChHHHHHHHHHHHHhcCCc---chHHHHHhcCChHHHHHHhc----C-------CCHHHHHHHHHHHHhccccccc
Q 040749 413 LPYPDSKILEHAVTAVLNLSIDE---SNKRLIAQQGAIPAIIEILQ----S-------GSTEARENSAAALFSLSMLDEN 478 (643)
Q Consensus 413 L~~~d~~~~~~a~~~L~nLs~~~---~~k~~i~~~g~i~~Lv~lL~----~-------~~~e~~~~Aa~~L~~Ls~~~~~ 478 (643)
|...+..-+..|...|.+.-... .....+. .-++.+++.++ + .+.++...|..+|..+-.+++.
T Consensus 2 la~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~--~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i 79 (372)
T PF12231_consen 2 LAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQ--DKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEI 79 (372)
T ss_pred CCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHH
Confidence 34456666777777777754321 2233332 22344444332 1 1456777888888888766555
Q ss_pred hhhhhccC---ChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-----CChhhHHHHHHH
Q 040749 479 KITIGLSD---GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-----RNLGMVDEALSI 550 (643)
Q Consensus 479 k~~i~~~g---~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~ 550 (643)
-..+-..- .+...+..+.+++. -|.-+...|+-|+. ..-..+++....+..++..+.. ++..+..+.+.+
T Consensus 80 ~~~l~~d~~~~~i~~~i~~l~~~~~-~K~i~~~~l~~ls~-Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i 157 (372)
T PF12231_consen 80 VSTLSDDFASFIIDHSIESLQNPNS-PKSICTHYLWCLSD-QKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNI 157 (372)
T ss_pred HhhCChHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc-CCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHH
Confidence 44444321 34455555544321 22233333333332 1112223344445555554432 566788899999
Q ss_pred HHHHhCChhhHHHhhcC--CcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 551 LLLLATHPEGRHKIGQL--SFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 551 L~~La~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
+.+|..... ..+.+. --++.++..+-+....++..|..++..+.
T Consensus 158 ~~~ll~q~p--~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 158 YKRLLSQFP--QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 999876432 223331 24667776666666777777777765554
No 451
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.81 E-value=1.8e+02 Score=30.63 Aligned_cols=75 Identities=12% Similarity=0.151 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHhccCCcchHHHHHcC--ChHHHHHHhcc---CChhhHHHHHHHHHHHhCChhhHHHhh-------cCCc
Q 040749 502 GKKDAVTALFNLSLNQANKARAIDAG--IVLPLMNLLEE---RNLGMVDEALSILLLLATHPEGRHKIG-------QLSF 569 (643)
Q Consensus 502 ~~~~A~~aL~nLs~~~~n~~~lv~~G--~v~~Lv~lL~~---~~~~~~~~Al~~L~~La~~~~~~~~i~-------~~g~ 569 (643)
++..|+..+..+...+....++...+ .+..|++++.. -...++..|+.+|..++........|. .+|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 45566666666666666677777766 89999999975 345778899999999988544333332 2566
Q ss_pred HHHHHHH
Q 040749 570 IETLVEY 576 (643)
Q Consensus 570 i~~Lv~l 576 (643)
+..+++-
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 6666553
No 452
>cd08329 CARD_BIRC2_BIRC3 Caspase activation and recruitment domain found in Baculoviral IAP repeat-containing proteins, BIRC2 (c-IAP1) and BIRC3 (c-IAP2). Caspase activation and recruitment domain (CARD) similar to those found in Baculoviral IAP repeat (BIR)-containing protein 2 (BIRC2) or cellular Inhibitor of Apoptosis Protein 1 (c-IAP1), and BIRC3 (or c-IAP2). IAPs are anti-apoptotic proteins that contain at least one BIR domain. Most IAPs also contain a C-terminal RING domain. In addition, both BIRC2 and BIRC3 contain a CARD. BIRC2 and BIRC3, through their binding with TRAF (TNF receptor-associated factor) 2, are recruited to TNFR-1/2 signaling complexes, where they regulate caspase-8 activity. They also play important roles in pro-survival NF-kB signaling pathways. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interac
Probab=28.45 E-value=1.7e+02 Score=24.57 Aligned_cols=61 Identities=16% Similarity=0.323 Sum_probs=47.0
Q ss_pred hhhhhhhhHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhh-cccch
Q 040749 49 RRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLC-NEGSK 110 (643)
Q Consensus 49 ~~~~~~~~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c-~~~sk 110 (643)
+.+.|++-..|++++.-..|+++.+...+. +...-...+..-...-++|+.|+..- ..|++
T Consensus 8 ~~~L~~~R~~Lv~~l~~v~~ilD~Ll~~~V-lt~ee~e~I~~~~t~~~qAr~Lld~l~~KG~~ 69 (94)
T cd08329 8 LSLIRKNRMALFQHLTSVLPILDSLLSANV-ITEQEYDVIKQKTQTPLQARELIDTVLVKGNA 69 (94)
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHcCC-CCHHHHHHHHcCCChHHHHHHHHHHHHhhhHH
Confidence 467788888999999889999999998774 56666666666566679999999886 34543
No 453
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=28.29 E-value=1.9e+02 Score=30.34 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhccccccchhhhhcc--CChHHHHHHhccC---ChhhHHHHHHHHHHhccCCcchHHHHH-------cCC
Q 040749 461 ARENSAAALFSLSMLDENKITIGLS--DGIPPLVDLLQNG---TIRGKKDAVTALFNLSLNQANKARAID-------AGI 528 (643)
Q Consensus 461 ~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~~~n~~~lv~-------~G~ 528 (643)
+|-.|..++.++.........+... +.+..|+++++.+ ...++..|+.+|..++........+++ .|+
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 5556666676666666666666654 4899999999765 457888999999999886655554433 555
Q ss_pred hHHHHHH
Q 040749 529 VLPLMNL 535 (643)
Q Consensus 529 v~~Lv~l 535 (643)
++.++..
T Consensus 318 L~~llR~ 324 (329)
T PF06012_consen 318 LPQLLRK 324 (329)
T ss_pred HHHHHHH
Confidence 5555543
No 454
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=28.04 E-value=33 Score=22.95 Aligned_cols=10 Identities=20% Similarity=0.461 Sum_probs=7.4
Q ss_pred CCCCCcCccc
Q 040749 310 RTCPKTRQTL 319 (643)
Q Consensus 310 ~~cP~~~~~l 319 (643)
..||.|+.+-
T Consensus 19 ~~CP~Cg~~~ 28 (34)
T cd00729 19 EKCPICGAPK 28 (34)
T ss_pred CcCcCCCCch
Confidence 4799998753
No 455
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=27.77 E-value=2.3e+02 Score=30.30 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=58.5
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHh
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQLISK 639 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~L~~ 639 (643)
.++..|.+-|.+.++.+...|+.+|..+..+++. .+.++-.......|..++. +..++++++-..++....+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999887654 4555666778888889998 6678898888888776654
No 456
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=27.69 E-value=6.5e+02 Score=25.38 Aligned_cols=73 Identities=25% Similarity=0.319 Sum_probs=46.9
Q ss_pred hccCChHHHHHHhccCChh--------hHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHH
Q 040749 483 GLSDGIPPLVDLLQNGTIR--------GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEER--NLGMVDEALSILL 552 (643)
Q Consensus 483 ~~~g~i~~Lv~lL~~~~~~--------~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~--~~~~~~~Al~~L~ 552 (643)
.+..++++++++++.++.- +...-..+|+. +-.|-++.|.+++.++ +.-++..|+.+|.
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilas-----------v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILAS-----------VGDGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHH-----------HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3467899999999754421 11222222322 3367778888888764 4566888899999
Q ss_pred HHhC-ChhhHHHhhc
Q 040749 553 LLAT-HPEGRHKIGQ 566 (643)
Q Consensus 553 ~La~-~~~~~~~i~~ 566 (643)
.++. ++..|+.+++
T Consensus 139 ~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 139 FLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHcCCCCHHHHHH
Confidence 8876 4555766655
No 457
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=27.57 E-value=1.7e+02 Score=28.02 Aligned_cols=68 Identities=19% Similarity=0.206 Sum_probs=49.8
Q ss_pred hHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 040749 529 VLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ-LSFIETLVEYIREGTPKNKECATAVLLELGANNSS 601 (643)
Q Consensus 529 v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 601 (643)
++.++++..+++..++..|+.++..+... -++. ..++|.++-+..+.++.++..|...+..+...-+.
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~q-----GLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQ-----GLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhc-----CCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 45566666667888888888888876542 1122 24788888888888899999999999998865543
No 458
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=27.54 E-value=38 Score=35.19 Aligned_cols=49 Identities=20% Similarity=0.400 Sum_probs=36.3
Q ss_pred ccccccCcccccC----ceecCCCC-----ccchHHHHHHHh-cCCCCCCCcCcccccC
Q 040749 274 EFLCPITLEIMRD----PVIIASGQ-----TFERESVQKWFD-SNHRTCPKTRQTLAHL 322 (643)
Q Consensus 274 ~f~CpIc~~~m~d----Pv~~~cg~-----ty~r~~I~~~~~-~~~~~cP~~~~~l~~~ 322 (643)
...|-||...... |.+.||.. ...+.|++.|+. .+..+|..|.......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 4889999886642 66777642 347999999998 5667899998765543
No 459
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=27.22 E-value=3.8e+02 Score=27.40 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=49.4
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH--HhhcCCcHHHHHHHH----h--------cCChHHHHHHHHHHH
Q 040749 528 IVLPLMNLLEERNLGMVDEALSILLLLATHPEGRH--KIGQLSFIETLVEYI----R--------EGTPKNKECATAVLL 593 (643)
Q Consensus 528 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~--~i~~~g~i~~Lv~lL----~--------~~s~~~~e~A~~~L~ 593 (643)
++|+++.++++.++..+..++.+|..+..+..... .+.+.|....+-+.+ . ..+...-..|..+|.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999987543332 345567665554433 3 234556677777887
Q ss_pred HHhc
Q 040749 594 ELGA 597 (643)
Q Consensus 594 ~L~~ 597 (643)
.|+.
T Consensus 200 ~L~~ 203 (282)
T PF10521_consen 200 SLLK 203 (282)
T ss_pred HHHH
Confidence 7753
No 460
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=26.94 E-value=5.1e+02 Score=29.11 Aligned_cols=144 Identities=14% Similarity=0.065 Sum_probs=83.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--------ChHHHHHHHHHHHHhc
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--------DSKILEHAVTAVLNLS 432 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--------d~~~~~~a~~~L~nLs 432 (643)
.-....+.+.+.+.++..+..|+..|..=+ .. .-.+|.++.++... |-......+..++.|.
T Consensus 206 QlYy~~It~a~~g~~~~~r~eAL~sL~TDs----GL------~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl 275 (576)
T KOG2549|consen 206 QLYYKEITEACTGSDEPLRQEALQSLETDS----GL------QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLL 275 (576)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhccCc----cH------HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHh
Confidence 445666677777778888888888776322 11 11467777777543 3445556667777777
Q ss_pred CCcchHHHHHhcCChHHHHHHhcC----------CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--Ch
Q 040749 433 IDESNKRLIAQQGAIPAIIEILQS----------GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TI 500 (643)
Q Consensus 433 ~~~~~k~~i~~~g~i~~Lv~lL~~----------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~ 500 (643)
.++.-.-.-.-...+|.++.++-+ ..+.+|..|+..+..++..-.....-.....+..+...+.+. ..
T Consensus 276 ~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~ 355 (576)
T KOG2549|consen 276 DNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPL 355 (576)
T ss_pred cCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 655433222223456666665522 246789999999888875432222223455666677666543 34
Q ss_pred hhHHHHHHHHHHhc
Q 040749 501 RGKKDAVTALFNLS 514 (643)
Q Consensus 501 ~~~~~A~~aL~nLs 514 (643)
...+-|+..|..|.
T Consensus 356 st~YGai~gL~~lg 369 (576)
T KOG2549|consen 356 STHYGAIAGLSELG 369 (576)
T ss_pred hhhhhHHHHHHHhh
Confidence 55555555555443
No 461
>PF00619 CARD: Caspase recruitment domain; InterPro: IPR001315 The caspase recruitment domain domain (CARD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. CARD is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the death effector domain (DED, see IPR001875 from INTERPRO), which work in similar pathways and show similar interaction properties []. The CARD domain typically associates with other CARD-containing proteins, forming either dimers or trimers. CARD domains can be found in isolation, or in combination with other domains. Domains associated with CARD include: NACHT (IPR007111 from INTERPRO) (in Nal1 and Bir1), NB-ARC (IPR002182 from INTERPRO) (in Apaf-1), pyrin/dapin domains (IPR004020 from INTERPRO) (in Nal1), leucine-rich repeats () (in Nal1), WD repeats (IPR001680 from INTERPRO) (in Apaf1), Src homology domains (IPR001452 from INTERPRO), PDZ (IPR001478 from INTERPRO), RING, kinase and DD domains []. CARD-containing proteins are involved in apoptosis through their regulation of caspases that contain CARDs in their N-terminal pro-domains, including human caspases 1, 2, 9, 11 and 12 []. CARD-containing proteins are also involved in inflammation through their regulation of NF-kappaB []. The mechanisms by which CARDs activate caspases and NF-kappaB involve the assembly of multi-protein complexes, which can facilitate dimerisation or serve as scaffolds on which proteases and kinases are assembled and activated.; GO: 0005515 protein binding, 0042981 regulation of apoptosis, 0005622 intracellular; PDB: 2NSN_A 2NZ7_B 2DBD_A 4E9M_C 2B1W_A 3YGS_P 2KN6_A 3CRD_A 1DGN_A 3KAT_A ....
Probab=26.92 E-value=3.3e+02 Score=21.75 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=47.4
Q ss_pred hhhhhhhHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhh-cccchHHH
Q 040749 50 RTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLC-NEGSKIYL 113 (643)
Q Consensus 50 ~~~~~~~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c-~~~sk~~l 113 (643)
...+++...|++.+..+.++++.+...++ +++.-...+......-++++.|+..- +.|++.|-
T Consensus 2 ~~L~~~r~~Lv~~l~~~~~ild~L~~~~v-lt~~e~e~I~~~~t~~~k~~~LLd~l~~kg~~a~~ 65 (85)
T PF00619_consen 2 ELLRKNRQELVEDLDDLDDILDHLLSRGV-LTEEEYEEIRSEPTRQDKARKLLDILKRKGPEAFD 65 (85)
T ss_dssp HHHHHTHHHHHHHSSHHHHHHHHHHHTTS-SSHHHHHHHHTSSSHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHhHHHHHHHhCcHHHHHHHHHHCCC-CCHHHHHHHHccCChHHHHHHHHHHHHHHCHHHHH
Confidence 35677888899999889999999998764 56766666666666778899988874 56665543
No 462
>KOG4713 consensus Cyclin-dependent kinase 2-associated protein [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning]
Probab=26.75 E-value=88 Score=29.22 Aligned_cols=46 Identities=24% Similarity=0.379 Sum_probs=32.0
Q ss_pred HHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhc
Q 040749 61 RRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCN 106 (643)
Q Consensus 61 ~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c~ 106 (643)
.+-.-|+.++||++..-.+--.-.....+.|+.-+..||.|++.|-
T Consensus 135 ~kY~~LL~vieEmgkeirpTyagsks~~ERLKr~I~hAR~lVRecl 180 (189)
T KOG4713|consen 135 TKYADLLSVIEEMGKEIRPTYAGSKSAMERLKRDIIHARLLVRECL 180 (189)
T ss_pred hHHHHHHHHHHHHhcccCccccccccHHHHHHhhHHHHHHHHHHHH
Confidence 3445667788999742211111235678899999999999999994
No 463
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=26.62 E-value=1.7e+02 Score=25.61 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=30.0
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH
Q 040749 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAA 606 (643)
Q Consensus 569 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~ 606 (643)
+++.|+.-|.+.++.+...|+.+|...|... .....+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~ 45 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYL 45 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHH
Confidence 5788999999999999999999999999766 443333
No 464
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=26.29 E-value=36 Score=29.54 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=7.6
Q ss_pred ccccccCccccc
Q 040749 274 EFLCPITLEIMR 285 (643)
Q Consensus 274 ~f~CpIc~~~m~ 285 (643)
...||-|+.-|.
T Consensus 9 KR~Cp~CG~kFY 20 (108)
T PF09538_consen 9 KRTCPSCGAKFY 20 (108)
T ss_pred cccCCCCcchhc
Confidence 456777766555
No 465
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.20 E-value=2.3e+02 Score=24.87 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH---hcCChHHHHHHHHHHHHHhcCCHHHHHHHHH--CCcHHHHH
Q 040749 542 GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI---REGTPKNKECATAVLLELGANNSSFILAALQ--YGVYEHLI 616 (643)
Q Consensus 542 ~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~ 616 (643)
+.....+.-|+.++-+...... ++..|.+-| ...+....-.|+.+|..|+.+++..+..-.+ ...+..|.
T Consensus 18 gp~~~~l~eIa~~t~~~~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~ 92 (125)
T PF01417_consen 18 GPPGKLLAEIAQLTYNSKDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQ 92 (125)
T ss_dssp S--HHHHHHHHHHTTSCHHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhccccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcc
Confidence 4444555566666655444433 455677777 4456778899999999999887765444332 23455554
Q ss_pred HHhh---cCCH---HHHHHHHHHHHHHHhhc
Q 040749 617 QLTE---GGTS---RAQRKANALLQLISKSE 641 (643)
Q Consensus 617 ~ll~---~g~~---~~k~~A~~lL~~L~~~~ 641 (643)
.+-. +|.+ .+|++|..++..|.+..
T Consensus 93 ~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~ 123 (125)
T PF01417_consen 93 DFQYVDPKGKDQGQNVREKAKEILELLNDDE 123 (125)
T ss_dssp G---BBTTSTBHHHHHHHHHHHHHHHHTSHH
T ss_pred eeeccCCCCccHHHHHHHHHHHHHHHhCCcc
Confidence 4422 2333 58999999999987643
No 466
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=25.96 E-value=3.1e+02 Score=22.30 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhh-cccc
Q 040749 52 QKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLC-NEGS 109 (643)
Q Consensus 52 ~~~~~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c-~~~s 109 (643)
.+++=..|+.++..+.|+++.+...+ -+.+........-.-.-++|+.|+... +.|.
T Consensus 3 v~~~r~~Li~~v~~v~~ilD~L~~~~-Vit~e~~~~I~a~~T~~~kar~Lld~l~~kG~ 60 (82)
T cd08330 3 VDQHREALIARVTNVDPILDKLHGKK-VITQEQYSEVRAEKTNQEKMRKLFSFVRSWGA 60 (82)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHCC-CCCHHHHHHHHcCCCcHHHHHHHHHHHHccCH
Confidence 45666689999999999999999766 356666666666566678899998886 3444
No 467
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.90 E-value=21 Score=36.98 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=30.4
Q ss_pred ccccccCcccccCceec----CCCC--ccchHHHHHHHhcCCCCCCCcCcc
Q 040749 274 EFLCPITLEIMRDPVII----ASGQ--TFERESVQKWFDSNHRTCPKTRQT 318 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~----~cg~--ty~r~~I~~~~~~~~~~cP~~~~~ 318 (643)
.-.||+|+..-.--++. .-|. -+|..|=.+|--.. ..||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R-~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR-VKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC-ccCCCCCCC
Confidence 45899999875433332 2454 45999999997653 479999864
No 468
>PLN03205 ATR interacting protein; Provisional
Probab=25.84 E-value=2.2e+02 Score=30.48 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=68.0
Q ss_pred HHHHHHhccCChhhHHHHHHHHHHH----hCChhhHHHhhcCCcHHHHHHHHh-----cCChHHHHHHHHHHHHHhcCCH
Q 040749 530 LPLMNLLEERNLGMVDEALSILLLL----ATHPEGRHKIGQLSFIETLVEYIR-----EGTPKNKECATAVLLELGANNS 600 (643)
Q Consensus 530 ~~Lv~lL~~~~~~~~~~Al~~L~~L----a~~~~~~~~i~~~g~i~~Lv~lL~-----~~s~~~~e~A~~~L~~L~~~~~ 600 (643)
++|+.+..-++..++..++.+|..+ +.+..--++-++.+.+. |.+++. +....++-.|+++..-+.....
T Consensus 326 EaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvs-LfElm~QiAv~~TEE~VrLEAvSIMnVIlmssn 404 (652)
T PLN03205 326 EPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHS-LFELMNQIASIRTEEDVKLEALSIMNIIVMSTD 404 (652)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHH-HHHHHHHHHhccchhheeeehhhhhHHhhhccc
Confidence 3455554445566666666655544 54443334445554443 334432 2345678889998876654433
Q ss_pred H--HHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHhhc
Q 040749 601 S--FILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 601 ~--~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~L~~~~ 641 (643)
. .+..+.+.-++.++..+++. +.-++|+.|..+|..|-++.
T Consensus 405 a~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLNCp 448 (652)
T PLN03205 405 AYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLNCP 448 (652)
T ss_pred hhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHcCc
Confidence 2 23445556788899888865 47799999999998876553
No 469
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=25.13 E-value=60 Score=27.65 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=25.2
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
..+|..|.||-|++ ..-||-+. + ..++..||.|+.....
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~~--k-----------~~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKIK--K-----------NIAIITCGNCGLYTEF 54 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeecC--C-----------CcceEECCCCCCccCE
Confidence 45788999999995 23232222 2 2457789999876544
No 470
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=24.83 E-value=44 Score=22.85 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=18.8
Q ss_pred CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccc
Q 040749 273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTL 319 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l 319 (643)
.+|.|+-|+..+.-..... ......||.|+..+
T Consensus 4 Y~y~C~~Cg~~fe~~~~~~--------------~~~~~~CP~Cg~~~ 36 (41)
T smart00834 4 YEYRCEDCGHTFEVLQKIS--------------DDPLATCPECGGDV 36 (41)
T ss_pred EEEEcCCCCCEEEEEEecC--------------CCCCCCCCCCCCcc
Confidence 4578887777665322211 01245799998743
No 471
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=24.76 E-value=24 Score=20.74 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=8.3
Q ss_pred cccccCcccccCc
Q 040749 275 FLCPITLEIMRDP 287 (643)
Q Consensus 275 f~CpIc~~~m~dP 287 (643)
|.||+|...+.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 4577777666654
No 472
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=24.75 E-value=49 Score=28.52 Aligned_cols=21 Identities=38% Similarity=0.656 Sum_probs=16.2
Q ss_pred CceecCC--CCccchHHHHHHHh
Q 040749 286 DPVIIAS--GQTFERESVQKWFD 306 (643)
Q Consensus 286 dPv~~~c--g~ty~r~~I~~~~~ 306 (643)
.||.++- --|.||.||++|..
T Consensus 64 HPVFiAQHATatCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATATCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCccchHHHHHHHhC
Confidence 7887641 12899999999986
No 473
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=24.57 E-value=29 Score=36.09 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=31.0
Q ss_pred CccccccCcccccCceec---CCCCc--cchHHHHHHHhcCCCCCCCcCc
Q 040749 273 HEFLCPITLEIMRDPVII---ASGQT--FERESVQKWFDSNHRTCPKTRQ 317 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~---~cg~t--y~r~~I~~~~~~~~~~cP~~~~ 317 (643)
..-.||+|+..-.--|+. .-|.. +|..|=.+|--.. ..||.|+.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R-~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR-VKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC-ccCCCCCC
Confidence 457899999875433432 34654 5999999997653 47999986
No 474
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=24.56 E-value=80 Score=23.74 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=21.0
Q ss_pred CCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 293 GQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 293 g~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
-.|||..|-+..+. ..||-|+-.+..
T Consensus 28 ECTFC~~C~e~~l~---~~CPNCgGelv~ 53 (57)
T PF06906_consen 28 ECTFCADCAETMLN---GVCPNCGGELVR 53 (57)
T ss_pred eCcccHHHHHHHhc---CcCcCCCCcccc
Confidence 46999999999873 479999887664
No 475
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=24.51 E-value=52 Score=20.49 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhccccccchhhhhccCChHHHHHHhc
Q 040749 461 ARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ 496 (643)
Q Consensus 461 ~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~ 496 (643)
+|..|+++|..+. ...++++|+..|+
T Consensus 1 VR~~Aa~aLg~ig----------d~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIG----------DPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-----------SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC----------CHHHHHHHHHHhc
Confidence 4667777777663 3567788887764
No 476
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=44 Score=36.40 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=46.3
Q ss_pred CCCCCccccccC-cccccCceec--CCCCccchHHHHHHHhcCCCCCCCcCcc-cccCCCCccHHHHHHHH
Q 040749 269 LVIPHEFLCPIT-LEIMRDPVII--ASGQTFERESVQKWFDSNHRTCPKTRQT-LAHLSIAPNYALKNLIL 335 (643)
Q Consensus 269 ~~~~~~f~CpIc-~~~m~dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~-l~~~~l~pn~~l~~~i~ 335 (643)
...++...||+| .+.|.+-+.+ .|..+||-.||.+.+-+. .||.|... .....+.++..++..+.
T Consensus 214 ~~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~--~~~~c~~~~~~~~~~~~p~~~r~~~n 282 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK--SMCVCGASNVLADDLLPPKTLRDTIN 282 (448)
T ss_pred ccCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc--cCCcchhhcccccccCCchhhHHHHH
Confidence 357889999999 8999998877 588999999999887753 45555332 22334566666665543
No 477
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.74 E-value=72 Score=38.18 Aligned_cols=47 Identities=11% Similarity=-0.072 Sum_probs=30.2
Q ss_pred CccccccCcccccCceecCCCC-----ccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 273 HEFLCPITLEIMRDPVIIASGQ-----TFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~-----ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
..+.||-|+....-..--.||. .||..|= +. .+...||.|+..+...
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG--~~-~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCG--IE-VEEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCcccc--Cc-CCCCcCCCCCCCCCcc
Confidence 4468888888753333334774 4788882 22 2346799999887754
No 478
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.57 E-value=1.6e+02 Score=26.16 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=19.2
Q ss_pred cHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 611 VYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 611 ~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
++..|..=+.+.++.+|.||..+|.++++.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~ 68 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEK 68 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence 355566656666677777777777776543
No 479
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=23.23 E-value=5e+02 Score=22.52 Aligned_cols=66 Identities=21% Similarity=0.225 Sum_probs=41.7
Q ss_pred ChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH-hcCChHH-HHHHHHHHHHHhcC
Q 040749 528 IVLPLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI-REGTPKN-KECATAVLLELGAN 598 (643)
Q Consensus 528 ~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~-~e~A~~~L~~L~~~ 598 (643)
++|.+.+.|. +..++.+-.+..++..|+....-.. .++..+++-+ ....+.. ...++.+|..++..
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~-----~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~ 75 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD-----EVLNALMESILKNWTQETVQRQALICLIVLCQS 75 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHHc
Confidence 3566667776 5677888889999999987433222 3444444433 3333333 37788888888854
No 480
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=23.21 E-value=8.5e+02 Score=25.42 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHh
Q 040749 376 LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454 (643)
Q Consensus 376 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL 454 (643)
++.+.-.+..|..+.. .+ ....++..|+.++..+ ++.+...++.++..-...- ..-.....+..+.+-+
T Consensus 1 ad~r~~~~~~L~~l~~-~~------~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl 70 (339)
T PF12074_consen 1 ADQRVLHASMLSSLPS-SS------LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGL 70 (339)
T ss_pred CcHHHHHHHHHHhCCC-cc------hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHh
Q ss_pred cCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccC-------ChhhHHHHHHHHHHhccCCcchHHHHHc
Q 040749 455 QSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNG-------TIRGKKDAVTALFNLSLNQANKARAIDA 526 (643)
Q Consensus 455 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~-------~~~~~~~A~~aL~nLs~~~~n~~~lv~~ 526 (643)
++..+.+|..-...+........+.....- ...+|.|+..++.. ...+-..++.++..++...-..... ..
T Consensus 71 ~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~-~~ 149 (339)
T PF12074_consen 71 KDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDS-KN 149 (339)
T ss_pred cCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhh-hh
Q ss_pred CChHHHH-----------HHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhc-CCcHHHHHHHHhcC--ChHHHHHHHHH
Q 040749 527 GIVLPLM-----------NLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQ-LSFIETLVEYIREG--TPKNKECATAV 591 (643)
Q Consensus 527 G~v~~Lv-----------~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~--s~~~~e~A~~~ 591 (643)
.....+. +++.. .+++-....+.+|..+.........--. ...-..++.++-+. ++.+|..|...
T Consensus 150 ~~~~~l~~~~kps~ll~~kvyskl~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~ 229 (339)
T PF12074_consen 150 ISFWSLALDPKPSFLLSEKVYSKLASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSA 229 (339)
T ss_pred hhhhhhccCCCcchhcCHHHHhccCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC
Q 040749 592 LLELGANNSSFILAALQYGVYEHLIQLTEGGT 623 (643)
Q Consensus 592 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~ 623 (643)
|..+...+++. +...++..+...+....
T Consensus 230 l~~l~~~~~~~----l~~~li~~l~~~l~~~~ 257 (339)
T PF12074_consen 230 LKKLYASNPEL----LSKSLISGLWKWLSSSE 257 (339)
T ss_pred HHHHHHhChHH----HHHHHHHHHHHHHHhcc
No 481
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=23.07 E-value=66 Score=32.94 Aligned_cols=50 Identities=26% Similarity=0.474 Sum_probs=32.0
Q ss_pred CCccccccCccccc--------------C---c--eecCCCCccchHHHHHHHhc--------CCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMR--------------D---P--VIIASGQTFERESVQKWFDS--------NHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~--------------d---P--v~~~cg~ty~r~~I~~~~~~--------~~~~cP~~~~~l~~ 321 (643)
+.+-.||+|..+-. | | ...||||..-.....-|-+- -+..||+|...|.-
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 45678999976421 2 2 23489997766666556552 13469999887764
No 482
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=23.03 E-value=4.7e+02 Score=33.50 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=64.7
Q ss_pred cCChHHHHH----HhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 444 QGAIPAIIE----ILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 444 ~g~i~~Lv~----lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
...++.++. +|.+.++.++..+......+-..-+ ......+|..|+..+.+|+..-...|+.+|..|+...
T Consensus 430 ~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fd---s~~qqeVv~~Lvthi~sg~~~ev~~aL~vL~~L~~~~-- 504 (1426)
T PF14631_consen 430 KDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFD---SYCQQEVVGALVTHIGSGNSQEVDAALDVLCELAEKN-- 504 (1426)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc--
Confidence 456777776 4567788888877776666543321 1223457889999998888777788999999998532
Q ss_pred hHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 520 KARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 520 ~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
...+.. +..+..+++.+..=+..=......+|..|+-
T Consensus 505 ~~~l~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~ 542 (1426)
T PF14631_consen 505 PSELQPFATFLKGILDYLDNLSLQQIRKLFDILCTLAF 542 (1426)
T ss_dssp HHHHHHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 223332 2233334444443233335566788888775
No 483
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=22.98 E-value=58 Score=35.76 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=45.8
Q ss_pred hccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 495 LQNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 495 L~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
..+.+++.+..|..++.|++.+.+||...+- ...-..+++++.-+.+.+-+.+..+++.+..
T Consensus 337 ~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 337 CAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTPEPRVNKAAARALAILGE 399 (763)
T ss_pred hcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhcccccccchhhhHHHHHhhh
Confidence 3466889999999999999999999876554 3444557777766777776666666666654
No 484
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=22.80 E-value=1.4e+02 Score=30.86 Aligned_cols=56 Identities=34% Similarity=0.507 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--------------hhHHHHHhcCCcHHHHHhCCC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP--------------ENRILIADCGAIPPLVQLLPY 415 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~--------------~~r~~i~~~g~i~~Lv~lL~~ 415 (643)
....+..++..|.+.+...+.+|++.|..++.+.- .|-..+.+.|+++.|+.+|+.
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 56789999999999999999999999999985432 455667788999999888764
No 485
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.59 E-value=7.8e+02 Score=26.28 Aligned_cols=134 Identities=13% Similarity=-0.017 Sum_probs=77.7
Q ss_pred ChhhHHHHHHHHHHhccCCcchHHHHHc---CChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHH
Q 040749 499 TIRGKKDAVTALFNLSLNQANKARAIDA---GIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETL 573 (643)
Q Consensus 499 ~~~~~~~A~~aL~nLs~~~~n~~~lv~~---G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~L 573 (643)
+.+....|+.+|..+..+++-...+-+. -.+...+..+.+ .+..+...++++|. ...=. ..+.....+..+
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls---~Q~f~-~~~~~~~~~~~l 134 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLS---DQKFS-PKIMTSDRVERL 134 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---cCCCC-CcccchhhHHHH
Confidence 3456677888887776555443333221 133444555543 22334444444443 32111 123344455555
Q ss_pred HHHHhc-----CChHHHHHHHHHHHHHhcCCHHHHHHHHHCC-cHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 574 VEYIRE-----GTPKNKECATAVLLELGANNSSFILAALQYG-VYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 574 v~lL~~-----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g-~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
+..+.. ++..+...++.++.++..+.|.. ++...+ .++.|+..+-+....++.+|..++..+.
T Consensus 135 ~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~--M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 135 LAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ--MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 555542 45667778888888988877653 222223 7888888888888888888888877654
No 486
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.57 E-value=79 Score=27.24 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=21.0
Q ss_pred CCccchHHHHHHHhc--------CCCCCCCcCccc
Q 040749 293 GQTFERESVQKWFDS--------NHRTCPKTRQTL 319 (643)
Q Consensus 293 g~ty~r~~I~~~~~~--------~~~~cP~~~~~l 319 (643)
.-.||..|+..++.+ .+..||.|+..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 557999999998864 457799997643
No 487
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=22.55 E-value=31 Score=35.18 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=26.8
Q ss_pred cccccCccccc-CceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 275 FLCPITLEIMR-DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 275 f~CpIc~~~m~-dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
..|--|.-... =--+++|.|.||..|-.. + ..+.||.|..++.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~-~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS--D-SDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc--C-ccccCcCcccHHH
Confidence 34555543222 123579999999999743 2 2458999965543
No 488
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=22.38 E-value=1.6e+02 Score=25.77 Aligned_cols=39 Identities=21% Similarity=0.062 Sum_probs=32.7
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc
Q 040749 528 IVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ 566 (643)
Q Consensus 528 ~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~ 566 (643)
+++.|+.-|.+++++++..|+.+|...|..+...+.++.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 467888889889999999999999999998766666654
No 489
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=22.38 E-value=46 Score=35.10 Aligned_cols=34 Identities=18% Similarity=0.554 Sum_probs=27.4
Q ss_pred CCCccccccCcccccCc---eec-CCCCccchHHHHHH
Q 040749 271 IPHEFLCPITLEIMRDP---VII-ASGQTFERESVQKW 304 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dP---v~~-~cg~ty~r~~I~~~ 304 (643)
-.++|.||+.+..|.+- |.+ .+|+.||...|++.
T Consensus 98 s~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~L 135 (518)
T KOG0883|consen 98 SEGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEEL 135 (518)
T ss_pred CCCcccCceeeeeecccceEEEEEecCceeeHHHHHHh
Confidence 46789999999999753 333 58999999999874
No 490
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=22.10 E-value=1.1e+02 Score=28.27 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHH
Q 040749 570 IETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQ 627 (643)
Q Consensus 570 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k 627 (643)
|..|+++|.+.++.....|+.+|.+..-- .+.+..+..+... ++.+|
T Consensus 96 V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv----------yDaf~dv~~~ak~-N~~Ak 142 (154)
T PF11791_consen 96 VQPLIDLLKSDDEELAEEAAEALKNTLLV----------YDAFNDVAELAKA-NAYAK 142 (154)
T ss_dssp HHHHHHGG--G-TTTHHHHHHHHHT--TT----------CCHHHHHHHHHHT--HHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhhHHH----------HhhHHHHHHHHHc-CHHHH
Confidence 78888888777778888888888653221 2345556666655 55443
No 491
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=22.08 E-value=4.5e+02 Score=21.66 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=44.2
Q ss_pred hhhhhHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhHHHHHHHHHHHHHH
Q 040749 52 QKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKL 131 (643)
Q Consensus 52 ~~~~~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c~~~sk~~l~~~~~~~~~~~~~~~~~l 131 (643)
.+++=..|+.+|.-.-|+++.|..++. ++..-....+.-.---+|++.|+..-.. .|+.....|..+.+++
T Consensus 3 l~~hRe~LV~rI~~v~plLD~Ll~n~~-it~E~y~~V~a~~T~qdkmRkLld~v~a--------kG~~~k~~F~~iL~e~ 73 (85)
T cd08324 3 LKSNRELLVTHIRNTQCLVDNLLKNDY-FSTEDAEIVCACPTQPDKVRKILDLVQS--------KGEEVSEYFLYLLQQL 73 (85)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhccCC-ccHHHHHHHHhCCCCHHHHHHHHHHHHh--------cCchHHHHHHHHHHHH
Confidence 345556899999999999999988763 4554444444444445666666554211 1223344555555555
Q ss_pred HHH
Q 040749 132 SAA 134 (643)
Q Consensus 132 ~~~ 134 (643)
..+
T Consensus 74 ~~~ 76 (85)
T cd08324 74 ADA 76 (85)
T ss_pred HHh
Confidence 444
No 492
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=21.67 E-value=8.3e+02 Score=28.78 Aligned_cols=152 Identities=15% Similarity=0.064 Sum_probs=89.5
Q ss_pred ChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHh-
Q 040749 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKI- 564 (643)
Q Consensus 487 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i- 564 (643)
.-..+...+.+++....+..+.++.++..-..-..+- ...-+++-....+..-..+.+....+|..++. .++....+
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~-~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK-EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc-cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3445555666777778888888888887422211110 11122222222322223556667788888877 44444444
Q ss_pred hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH--HHHHHHHHCCc-------HHHHHHHhhcC----CHHHHHHHH
Q 040749 565 GQLSFIETLVEYIREGTPKNKECATAVLLELGANNS--SFILAALQYGV-------YEHLIQLTEGG----TSRAQRKAN 631 (643)
Q Consensus 565 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~--~~~~~~~~~g~-------i~~L~~ll~~g----~~~~k~~A~ 631 (643)
.+.++...++.++-++++...+.|..+|......+. +....+++... ...|-.+.... .|++-+...
T Consensus 521 ~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~~~ 600 (727)
T PF12726_consen 521 SDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRCLM 600 (727)
T ss_pred cCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 456889999999999999999999999999875433 33444554332 33333333322 355555555
Q ss_pred HHHHHHHh
Q 040749 632 ALLQLISK 639 (643)
Q Consensus 632 ~lL~~L~~ 639 (643)
.+|+.|++
T Consensus 601 DIi~~Lcd 608 (727)
T PF12726_consen 601 DIIEVLCD 608 (727)
T ss_pred HHHHHHcC
Confidence 56666554
No 493
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=21.63 E-value=5.4e+02 Score=23.39 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=56.8
Q ss_pred ccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 040749 484 LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHK 563 (643)
Q Consensus 484 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~ 563 (643)
+...-..+..+|.+++.++++.|+.||..--. + .+.. .-+.|-.++.+ ...+++-. .+. +.......+.
T Consensus 15 ~~~l~~~~~~LL~~~d~~vQklAL~cll~~k~--~---~l~p--Y~d~L~~Lldd--~~frdeL~-~f~-~~~~~~~I~~ 83 (141)
T PF07539_consen 15 SDELYDALLRLLSSRDPEVQKLALDCLLTWKD--P---YLTP--YKDNLENLLDD--KTFRDELT-TFN-LSDESSVIEE 83 (141)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---HHHh--HHHHHHHHcCc--chHHHHHH-hhc-ccCCcCCCCH
Confidence 34556778889999999999999999985421 1 1110 11234444432 23333322 222 2222212222
Q ss_pred hhcCCcHHHHHHHHhc------CChHH-HHHHHHHHHHHhcCCHHHHHHH
Q 040749 564 IGQLSFIETLVEYIRE------GTPKN-KECATAVLLELGANNSSFILAA 606 (643)
Q Consensus 564 i~~~g~i~~Lv~lL~~------~s~~~-~e~A~~~L~~L~~~~~~~~~~~ 606 (643)
-....++|.++++|.. ++... ...=..+|..|.....+....+
T Consensus 84 ehR~~l~pvvlRILygk~~~~~~~~~~~~~rR~aIL~~L~~l~~~El~~F 133 (141)
T PF07539_consen 84 EHRPELMPVVLRILYGKMQSRKGSGSKKASRRAAILRFLAGLSEEELGLF 133 (141)
T ss_pred HHHhHHHHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHhCCCHHHHHHH
Confidence 2335778888888742 22111 1333345666665555444433
No 494
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=21.40 E-value=81 Score=36.59 Aligned_cols=51 Identities=20% Similarity=0.425 Sum_probs=37.6
Q ss_pred CCccccccCcc--cccCceecCCCCc----c-chHHHHHHHh-cCCCCCCCcCcccccC
Q 040749 272 PHEFLCPITLE--IMRDPVIIASGQT----F-ERESVQKWFD-SNHRTCPKTRQTLAHL 322 (643)
Q Consensus 272 ~~~f~CpIc~~--~m~dPv~~~cg~t----y-~r~~I~~~~~-~~~~~cP~~~~~l~~~ 322 (643)
.|.-.|.||.. .-.||..-||..+ | .++|+.+|.. ++...|-.|+.+..-+
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 45578999854 4457888887643 3 8999999998 4556799998877643
No 495
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=21.27 E-value=63 Score=21.28 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=20.1
Q ss_pred ccccCcccccC--ceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 276 LCPITLEIMRD--PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 276 ~CpIc~~~m~d--Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+|+.|.+.+.+ .++..-|..|... -+.|..|+.+|.
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~---------Cf~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPE---------CFKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEEeCCcccccc---------CCCCcccCCcCc
Confidence 47777777765 3333444444333 346777776653
No 496
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.21 E-value=54 Score=25.05 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=12.1
Q ss_pred CCCCCCCcCcccccC
Q 040749 308 NHRTCPKTRQTLAHL 322 (643)
Q Consensus 308 ~~~~cP~~~~~l~~~ 322 (643)
.|..||.|+.+++.+
T Consensus 2 ~HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 2 PHKHCPVCGKPIPPD 16 (59)
T ss_pred CCCcCCcCCCcCCcc
Confidence 477899999988753
No 497
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=21.12 E-value=83 Score=36.42 Aligned_cols=67 Identities=13% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCCCccccccCcccccCcee-cCCCCc--cchHHHHH-HHhcCCCCCCCcCcccccCCCCccHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVI-IASGQT--FERESVQK-WFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQ 336 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~-~~cg~t--y~r~~I~~-~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 336 (643)
.+.-.+.|||++..|.=|+- ..|+|. |+-...-. -.+.+.+.||+|........++-...+-..+..
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~ 372 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQS 372 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhh
Confidence 34556999999999998876 478864 44332211 112356789999999888888777665555443
No 498
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=21.08 E-value=5.1e+02 Score=25.91 Aligned_cols=54 Identities=9% Similarity=0.299 Sum_probs=43.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHHHhhhHHHHHhh
Q 040749 21 APSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIR 74 (643)
Q Consensus 21 ~~~~~~~~~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~ee~~ 74 (643)
.|.+..++.+++++|+---..|+-|.....+.+.|+..|+++++.+.+-|...-
T Consensus 128 ~pAPP~~FAD~mRtlv~pgs~i~P~~EmK~~Nkenylrfa~KLG~~~~efn~~f 181 (311)
T PF04642_consen 128 LPAPPMPFADTMRTLVHPGSAIAPFDEMKEVNKENYLRFAGKLGKLILEFNSVF 181 (311)
T ss_pred CCCCCccHHHHHHhhcCCCCCCCChHHHhhhhhhhhhhhHHHHHHHHHHhhccc
Confidence 344667889999998887777777777778999999999999999888877654
No 499
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=20.54 E-value=6.6e+02 Score=26.57 Aligned_cols=140 Identities=19% Similarity=0.141 Sum_probs=70.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-------ChhhHHHHHHHHHHhccCCcch
Q 040749 448 PAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-------TIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 448 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
..++..+.+.+...+.. +|.+|..++.. ...+|.++.++.++ +.......+..+..|..++.-.
T Consensus 181 ~~It~a~~~~~~~~r~~---aL~sL~tD~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~ 251 (343)
T cd08050 181 EEITEALVGSNEEKRRE---ALQSLRTDPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLH 251 (343)
T ss_pred HHHHHHHhCCCHHHHHH---HHHHhccCCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCc
Confidence 34444444444444444 34444443322 23456666665432 3444555566666666666554
Q ss_pred HHHHHcCChHHHHHHhcc----------CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC-Ch-HHHHHH
Q 040749 521 ARAIDAGIVLPLMNLLEE----------RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG-TP-KNKECA 588 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~----------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~-~~~e~A 588 (643)
...-=.-.+|.++..+-. ....+++.|..+|..+|..-...-.-+...++..+.+.+.+. .+ ...--|
T Consensus 252 le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGA 331 (343)
T cd08050 252 LEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGA 331 (343)
T ss_pred hHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHH
Confidence 333223366666655522 234778899999999986211111011222334555555432 23 235666
Q ss_pred HHHHHHHh
Q 040749 589 TAVLLELG 596 (643)
Q Consensus 589 ~~~L~~L~ 596 (643)
+..|..|+
T Consensus 332 i~GL~~lG 339 (343)
T cd08050 332 IVGLSALG 339 (343)
T ss_pred HHHHHHhC
Confidence 66666664
No 500
>PRK01343 zinc-binding protein; Provisional
Probab=20.43 E-value=74 Score=24.12 Aligned_cols=35 Identities=9% Similarity=0.182 Sum_probs=18.7
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcC
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN 308 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~ 308 (643)
...||||+.....+..-=|....-.--+-+|+.++
T Consensus 9 ~~~CP~C~k~~~~~~rPFCS~RC~~iDLg~W~~e~ 43 (57)
T PRK01343 9 TRPCPECGKPSTREAYPFCSERCRDIDLNRWLSGS 43 (57)
T ss_pred CCcCCCCCCcCcCCCCcccCHHHhhhhHHHHhCCC
Confidence 46799999876544321122222222356677654
Done!