Query 040749
Match_columns 643
No_of_seqs 479 out of 3146
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 18:30:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.4E-30 4.8E-35 274.9 21.0 263 377-640 47-335 (354)
2 1xm9_A Plakophilin 1; armadill 100.0 3.5E-30 1.2E-34 282.7 24.4 278 363-641 3-362 (457)
3 3l6x_A Catenin delta-1; cateni 100.0 1.5E-29 5.3E-34 280.7 26.4 279 362-641 48-386 (584)
4 3nmz_A APC variant protein; pr 100.0 1.5E-29 5.2E-34 274.8 20.2 261 379-640 165-451 (458)
5 1xm9_A Plakophilin 1; armadill 100.0 9E-29 3.1E-33 271.4 24.1 282 360-643 42-453 (457)
6 3now_A UNC-45 protein, SD10334 100.0 4.9E-28 1.7E-32 277.2 26.3 280 360-639 419-737 (810)
7 3ul1_B Importin subunit alpha- 100.0 4E-27 1.4E-31 262.0 27.0 280 360-639 98-387 (510)
8 3tpo_A Importin subunit alpha- 100.0 1E-26 3.5E-31 260.0 28.8 280 360-639 117-406 (529)
9 3nmw_A APC variant protein; AR 100.0 7.6E-28 2.6E-32 254.0 18.1 243 360-602 71-339 (354)
10 3nmz_A APC variant protein; pr 100.0 1.9E-27 6.4E-32 258.4 21.4 280 359-638 67-407 (458)
11 3l6x_A Catenin delta-1; cateni 100.0 2.7E-27 9.2E-32 262.8 22.9 281 360-642 88-479 (584)
12 3now_A UNC-45 protein, SD10334 99.9 4.8E-27 1.6E-31 269.0 23.5 282 360-642 493-785 (810)
13 4b8j_A Importin subunit alpha- 99.9 2.3E-25 7.8E-30 248.8 30.5 281 360-640 115-401 (528)
14 3ul1_B Importin subunit alpha- 99.9 6.9E-26 2.3E-30 252.1 24.9 278 362-639 57-345 (510)
15 3tpo_A Importin subunit alpha- 99.9 4.8E-25 1.6E-29 246.4 28.5 280 360-639 160-449 (529)
16 4hxt_A De novo protein OR329; 99.9 2.3E-25 7.9E-30 222.9 23.0 239 362-600 2-244 (252)
17 4hxt_A De novo protein OR329; 99.9 5.1E-25 1.8E-29 220.4 24.0 238 404-641 2-243 (252)
18 4b8j_A Importin subunit alpha- 99.9 1.2E-24 4E-29 243.0 28.9 278 362-639 74-358 (528)
19 4db8_A Armadillo-repeat protei 99.9 1.5E-25 5.3E-30 225.0 18.7 237 362-598 12-252 (252)
20 1wa5_B Importin alpha subunit; 99.9 2.3E-24 7.7E-29 240.9 28.8 281 360-640 128-413 (530)
21 2jdq_A Importin alpha-1 subuni 99.9 1.5E-23 5.2E-28 228.2 31.8 277 362-639 64-347 (450)
22 1wa5_B Importin alpha subunit; 99.9 1.2E-23 4E-28 235.1 30.4 278 362-639 87-370 (530)
23 4db8_A Armadillo-repeat protei 99.9 1.5E-24 5E-29 217.9 19.1 236 404-639 12-251 (252)
24 2jdq_A Importin alpha-1 subuni 99.9 1.8E-23 6.2E-28 227.6 28.2 279 361-640 106-391 (450)
25 1jdh_A Beta-catenin; beta-cate 99.9 4.2E-23 1.4E-27 229.7 24.0 276 361-639 58-339 (529)
26 3tt9_A Plakophilin-2; cell adh 99.9 1E-23 3.5E-28 208.1 14.3 195 362-557 8-230 (233)
27 2z6h_A Catenin beta-1, beta-ca 99.9 1.3E-22 4.5E-27 232.0 25.4 276 361-639 55-336 (644)
28 1jdh_A Beta-catenin; beta-cate 99.9 3.3E-23 1.1E-27 230.6 18.7 277 360-640 15-296 (529)
29 2z6h_A Catenin beta-1, beta-ca 99.9 9E-23 3.1E-27 233.5 19.9 277 360-640 12-293 (644)
30 3opb_A SWI5-dependent HO expre 99.9 2.4E-22 8.4E-27 226.0 22.8 280 360-639 374-728 (778)
31 3tt9_A Plakophilin-2; cell adh 99.9 1.7E-22 5.9E-27 199.3 15.1 193 405-598 9-230 (233)
32 2z6g_A B-catenin; FULL-length, 99.9 2E-21 6.8E-26 226.6 24.7 276 361-639 191-472 (780)
33 4db6_A Armadillo repeat protei 99.9 1.3E-21 4.6E-26 190.7 19.3 197 361-557 11-210 (210)
34 2z6g_A B-catenin; FULL-length, 99.9 1.4E-21 4.7E-26 228.0 19.1 276 361-640 149-429 (780)
35 4db6_A Armadillo repeat protei 99.9 6.4E-21 2.2E-25 185.8 20.8 198 443-640 10-210 (210)
36 2f42_A STIP1 homology and U-bo 99.8 9.2E-21 3.2E-25 177.2 9.6 76 269-344 101-176 (179)
37 3opb_A SWI5-dependent HO expre 99.8 4.2E-19 1.4E-23 199.8 20.8 323 290-638 282-682 (778)
38 1xqr_A HSPBP1 protein; armadil 99.8 2.2E-18 7.7E-23 176.9 22.0 236 361-597 27-287 (296)
39 2kr4_A Ubiquitin conjugation f 99.8 4.2E-20 1.4E-24 152.9 6.5 75 268-343 8-82 (85)
40 2kre_A Ubiquitin conjugation f 99.8 5.8E-20 2E-24 156.6 7.0 75 267-342 22-96 (100)
41 1xqr_A HSPBP1 protein; armadil 99.8 2.1E-18 7.2E-23 177.1 19.5 221 418-638 54-286 (296)
42 1wgm_A Ubiquitin conjugation f 99.8 9.6E-20 3.3E-24 154.6 7.7 76 268-344 16-92 (98)
43 1t1h_A Gspef-atpub14, armadill 99.7 1.3E-18 4.6E-23 141.9 6.1 76 269-344 3-78 (78)
44 2c2l_A CHIP, carboxy terminus 99.7 1.7E-17 5.7E-22 169.8 14.6 77 268-344 202-278 (281)
45 2yu4_A E3 SUMO-protein ligase 99.7 3.4E-17 1.2E-21 138.3 5.6 72 271-342 4-84 (94)
46 3m62_A Ubiquitin conjugation f 99.6 2.8E-15 9.6E-20 170.4 9.4 102 229-343 858-960 (968)
47 3ztg_A E3 ubiquitin-protein li 99.6 5.9E-15 2E-19 124.2 8.1 76 269-344 8-86 (92)
48 3grl_A General vesicular trans 99.5 3.2E-13 1.1E-17 148.5 21.7 276 360-639 19-342 (651)
49 3htk_C E3 SUMO-protein ligase 99.5 2.1E-13 7E-18 133.2 12.8 71 270-340 177-251 (267)
50 3fl2_A E3 ubiquitin-protein li 99.5 3.2E-14 1.1E-18 126.7 4.8 70 271-340 49-119 (124)
51 2bay_A PRE-mRNA splicing facto 99.5 2E-14 6.9E-19 110.2 2.8 54 274-328 3-57 (61)
52 1z6u_A NP95-like ring finger p 99.4 1E-13 3.5E-18 127.3 5.1 70 271-340 75-145 (150)
53 3grl_A General vesicular trans 99.4 9.2E-11 3.2E-15 129.1 24.8 279 360-638 58-393 (651)
54 2y43_A E3 ubiquitin-protein li 99.3 4.8E-13 1.7E-17 114.0 4.3 70 271-341 19-89 (99)
55 3ltm_A Alpha-REP4; protein eng 99.3 6.1E-11 2.1E-15 115.1 18.8 190 360-600 17-206 (211)
56 3lrq_A E3 ubiquitin-protein li 99.3 7.6E-13 2.6E-17 112.9 4.1 70 270-339 18-88 (100)
57 2ckl_A Polycomb group ring fin 99.3 1.2E-12 4E-17 113.5 4.6 69 270-339 11-84 (108)
58 1oyz_A Hypothetical protein YI 99.3 6.7E-11 2.3E-15 120.1 18.3 198 361-596 22-220 (280)
59 3ltj_A Alpharep-4; protein eng 99.3 1.2E-10 4.2E-15 112.0 19.2 186 360-596 12-197 (201)
60 4ayc_A E3 ubiquitin-protein li 99.3 2.2E-12 7.4E-17 117.0 6.1 65 272-339 51-115 (138)
61 3l11_A E3 ubiquitin-protein li 99.3 6.8E-13 2.3E-17 116.4 2.6 70 270-339 11-87 (115)
62 3hct_A TNF receptor-associated 99.3 1.5E-12 5.1E-17 114.7 4.4 69 269-337 13-81 (118)
63 2ecw_A Tripartite motif-contai 99.3 6.6E-13 2.3E-17 109.7 2.0 64 269-332 14-82 (85)
64 2ecy_A TNF receptor-associated 99.3 3E-12 1E-16 100.3 5.7 56 269-324 10-65 (66)
65 2egp_A Tripartite motif-contai 99.3 1.2E-13 4E-18 112.6 -2.8 64 269-332 7-76 (79)
66 2yur_A Retinoblastoma-binding 99.3 3.9E-12 1.3E-16 102.1 6.2 59 269-327 10-71 (74)
67 3ltm_A Alpha-REP4; protein eng 99.3 1.4E-10 4.8E-15 112.5 18.1 187 403-640 18-204 (211)
68 1jm7_B BARD1, BRCA1-associated 99.3 1.2E-12 4.1E-17 115.2 2.5 67 271-340 19-86 (117)
69 2csy_A Zinc finger protein 183 99.3 3.1E-12 1.1E-16 104.6 4.8 62 270-333 11-72 (81)
70 2ckl_B Ubiquitin ligase protei 99.3 2.1E-12 7.2E-17 120.9 4.1 70 270-339 50-121 (165)
71 2ecv_A Tripartite motif-contai 99.3 9.2E-13 3.2E-17 108.8 1.3 64 269-332 14-82 (85)
72 2djb_A Polycomb group ring fin 99.2 8.6E-12 3E-16 99.5 6.4 58 269-327 10-68 (72)
73 3ltj_A Alpharep-4; protein eng 99.2 2.8E-10 9.7E-15 109.4 17.5 185 404-639 14-198 (201)
74 2ysl_A Tripartite motif-contai 99.2 1.8E-11 6.1E-16 97.9 6.2 56 269-324 15-72 (73)
75 1jm7_A BRCA1, breast cancer ty 99.2 5.9E-12 2E-16 109.8 3.4 67 272-338 19-87 (112)
76 2ysj_A Tripartite motif-contai 99.2 3.5E-11 1.2E-15 93.2 6.4 47 269-315 15-63 (63)
77 1g25_A CDK-activating kinase a 99.2 1.9E-11 6.6E-16 95.4 4.5 55 273-327 2-61 (65)
78 1rmd_A RAG1; V(D)J recombinati 99.1 1.5E-11 5E-16 108.0 3.5 67 270-336 19-86 (116)
79 3knv_A TNF receptor-associated 99.1 1.1E-11 3.7E-16 112.4 2.5 67 270-336 27-102 (141)
80 3hcs_A TNF receptor-associated 99.1 2.1E-11 7.2E-16 114.7 4.5 68 270-337 14-81 (170)
81 1oyz_A Hypothetical protein YI 99.1 2.3E-09 7.7E-14 108.7 18.9 200 401-638 20-220 (280)
82 3ng2_A RNF4, snurf, ring finge 99.1 4.5E-11 1.5E-15 95.0 3.5 58 270-328 6-70 (71)
83 2ct2_A Tripartite motif protei 99.1 1.8E-10 6E-15 95.7 6.5 55 269-323 10-70 (88)
84 4fdd_A Transportin-1; heat rep 99.1 4.5E-10 1.5E-14 132.3 12.1 273 361-639 173-471 (852)
85 2ecj_A Tripartite motif-contai 99.0 1.3E-10 4.5E-15 88.3 4.8 46 270-315 11-58 (58)
86 4fdd_A Transportin-1; heat rep 99.0 1.8E-09 6.1E-14 127.1 16.7 274 362-640 128-430 (852)
87 2d8t_A Dactylidin, ring finger 99.0 1.4E-10 4.6E-15 92.2 3.8 51 271-322 12-62 (71)
88 2xeu_A Ring finger protein 4; 99.0 1.1E-10 3.6E-15 90.7 2.0 54 273-327 2-62 (64)
89 2ea6_A Ring finger protein 4; 99.0 3.1E-10 1.1E-14 89.5 4.4 52 269-321 10-68 (69)
90 1e4u_A Transcriptional repress 98.9 7.1E-10 2.4E-14 89.4 5.3 55 270-324 7-65 (78)
91 2ect_A Ring finger protein 126 98.9 8E-10 2.8E-14 89.4 5.3 57 270-327 11-70 (78)
92 1b3u_A Protein (protein phosph 98.9 7.1E-09 2.4E-13 115.9 14.1 264 362-639 324-587 (588)
93 1b3u_A Protein (protein phosph 98.9 1.4E-08 4.8E-13 113.5 15.8 227 362-597 164-392 (588)
94 1ibr_B P95, importin beta-1 su 98.9 1E-08 3.5E-13 110.9 12.6 273 362-640 128-438 (462)
95 2ecm_A Ring finger and CHY zin 98.8 2.6E-09 8.8E-14 80.1 4.3 47 273-320 4-54 (55)
96 2vgl_B AP-2 complex subunit be 98.8 7.6E-08 2.6E-12 108.5 18.0 264 361-637 120-417 (591)
97 4gmo_A Putative uncharacterize 98.8 2.2E-08 7.5E-13 114.7 13.6 194 444-638 33-257 (684)
98 2ecn_A Ring finger protein 141 98.8 1.3E-09 4.5E-14 86.1 2.3 52 270-323 11-62 (70)
99 1chc_A Equine herpes virus-1 r 98.8 3.6E-09 1.2E-13 83.1 4.3 48 273-321 4-52 (68)
100 4gmo_A Putative uncharacterize 98.8 2.6E-08 8.8E-13 114.1 13.1 217 361-578 33-286 (684)
101 2ep4_A Ring finger protein 24; 98.8 5.6E-09 1.9E-13 83.5 5.3 52 270-322 11-65 (74)
102 1bor_A Transcription factor PM 98.8 2E-09 6.9E-14 81.0 1.8 46 272-321 4-49 (56)
103 1iym_A EL5; ring-H2 finger, ub 98.7 5.4E-09 1.9E-13 78.3 4.1 49 271-320 2-54 (55)
104 2kiz_A E3 ubiquitin-protein li 98.7 1.1E-08 3.8E-13 80.5 5.7 52 270-322 10-64 (69)
105 4ap4_A E3 ubiquitin ligase RNF 98.7 3.1E-09 1.1E-13 95.2 2.8 55 272-327 5-66 (133)
106 2l0b_A E3 ubiquitin-protein li 98.7 9.7E-09 3.3E-13 85.6 4.6 51 270-321 36-89 (91)
107 2vgl_B AP-2 complex subunit be 98.7 1.7E-07 5.8E-12 105.6 16.3 255 361-638 12-267 (591)
108 1x4j_A Ring finger protein 38; 98.7 1.1E-08 3.8E-13 82.0 4.3 50 271-321 20-72 (75)
109 1v87_A Deltex protein 2; ring- 98.7 1.6E-08 5.4E-13 88.2 4.9 50 272-321 23-94 (114)
110 2y1n_A E3 ubiquitin-protein li 98.6 1.6E-08 5.6E-13 105.2 3.7 51 273-323 331-381 (389)
111 4ic3_A E3 ubiquitin-protein li 98.6 9E-09 3.1E-13 82.3 1.3 45 272-321 22-67 (74)
112 1w63_A Adapter-related protein 98.6 1.5E-06 5.1E-11 98.3 20.1 257 363-640 71-380 (618)
113 1w63_A Adapter-related protein 98.6 2.2E-06 7.6E-11 97.0 20.7 251 362-639 142-414 (618)
114 2bpt_A Importin beta-1 subunit 98.6 1E-06 3.5E-11 103.2 18.2 270 362-639 369-668 (861)
115 3b2a_A TON_1937, putative unch 98.6 1.8E-06 6.3E-11 82.5 16.2 218 359-592 30-256 (265)
116 1qgr_A Protein (importin beta 98.5 1.2E-06 4.1E-11 102.8 16.9 274 361-640 171-480 (876)
117 1qgr_A Protein (importin beta 98.5 2.8E-06 9.7E-11 99.6 19.3 273 362-640 128-438 (876)
118 4ap4_A E3 ubiquitin ligase RNF 98.5 3.8E-08 1.3E-12 88.1 1.7 57 271-328 69-132 (133)
119 2ecg_A Baculoviral IAP repeat- 98.4 6.3E-08 2.2E-12 77.5 2.2 45 272-321 23-68 (75)
120 2bpt_A Importin beta-1 subunit 98.4 5.4E-06 1.8E-10 97.0 17.9 273 362-640 134-441 (861)
121 1u6g_C TIP120 protein, CAND1; 98.4 5.7E-07 2E-11 110.0 9.4 270 362-639 6-284 (1230)
122 1wim_A KIAA0161 protein; ring 98.4 7.7E-08 2.6E-12 80.7 1.2 49 273-321 4-66 (94)
123 2ecl_A Ring-box protein 2; RNF 98.4 2.1E-07 7.3E-12 75.6 3.8 49 273-322 14-77 (81)
124 1ibr_B P95, importin beta-1 su 98.3 9.3E-07 3.2E-11 95.4 9.8 266 364-640 3-289 (462)
125 2vje_A E3 ubiquitin-protein li 98.3 2.8E-07 9.6E-12 71.2 3.3 49 272-321 6-57 (64)
126 2vje_B MDM4 protein; proto-onc 98.3 2.5E-07 8.4E-12 71.2 2.9 48 273-321 6-56 (63)
127 2qk2_A LP04448P; mini spindles 98.2 8.8E-06 3E-10 80.4 12.8 184 448-639 18-205 (242)
128 3dpl_R Ring-box protein 1; ubi 98.2 1.1E-06 3.7E-11 75.0 4.6 46 274-320 37-100 (106)
129 1u6g_C TIP120 protein, CAND1; 98.2 7.9E-06 2.7E-10 99.9 14.0 231 361-600 47-287 (1230)
130 2vgl_A Adaptor protein complex 98.2 6.1E-05 2.1E-09 85.0 19.8 254 362-638 146-432 (621)
131 2yho_A E3 ubiquitin-protein li 98.2 3.1E-07 1.1E-11 74.1 0.6 46 272-322 16-62 (79)
132 2qk2_A LP04448P; mini spindles 98.2 3.9E-06 1.3E-10 82.9 8.7 182 366-557 19-206 (242)
133 3t6p_A Baculoviral IAP repeat- 98.1 5.9E-07 2E-11 93.1 1.3 46 271-321 292-338 (345)
134 1te4_A Conserved protein MTH18 98.1 6.7E-07 2.3E-11 79.6 1.1 120 403-553 11-130 (131)
135 3b2a_A TON_1937, putative unch 98.1 0.0001 3.4E-09 70.6 15.9 220 405-637 34-259 (265)
136 2ea5_A Cell growth regulator w 98.0 3.7E-06 1.3E-10 65.6 4.6 45 272-321 13-58 (68)
137 2vgl_A Adaptor protein complex 98.0 0.00014 4.7E-09 82.2 18.8 262 363-640 75-399 (621)
138 2d8s_A Cellular modulator of i 98.0 6.2E-06 2.1E-10 66.5 5.2 52 271-322 12-71 (80)
139 1te4_A Conserved protein MTH18 98.0 5.3E-07 1.8E-11 80.3 -1.4 120 361-512 11-130 (131)
140 1ho8_A Vacuolar ATP synthase s 97.9 0.00019 6.6E-09 76.4 16.6 263 373-638 136-475 (480)
141 2qk1_A Protein STU2; STU2P, XM 97.9 2.5E-05 8.5E-10 77.7 8.4 188 367-556 21-220 (249)
142 2qk1_A Protein STU2; STU2P, XM 97.9 8.9E-05 3E-09 73.6 12.3 189 449-640 20-221 (249)
143 3dad_A FH1/FH2 domain-containi 97.8 0.00017 6E-09 73.2 13.7 149 489-637 121-284 (339)
144 4a0k_B E3 ubiquitin-protein li 97.8 3.2E-06 1.1E-10 73.1 0.2 46 274-320 48-111 (117)
145 3dad_A FH1/FH2 domain-containi 97.7 0.00068 2.3E-08 68.9 14.9 178 361-538 117-316 (339)
146 4ady_A RPN2, 26S proteasome re 97.5 0.0069 2.4E-07 70.1 22.3 234 363-638 430-675 (963)
147 3tjz_B Coatomer subunit gamma; 97.5 0.001 3.5E-08 69.1 13.9 266 324-632 78-346 (355)
148 2db0_A 253AA long hypothetical 97.4 0.026 8.8E-07 52.0 20.3 212 360-596 30-245 (253)
149 3tjz_B Coatomer subunit gamma; 97.4 0.0012 4E-08 68.6 13.1 244 363-638 69-315 (355)
150 2iw3_A Elongation factor 3A; a 97.3 0.019 6.4E-07 67.2 22.5 257 362-640 54-325 (986)
151 1ho8_A Vacuolar ATP synthase s 97.2 0.0023 8E-08 68.2 12.3 231 366-598 171-477 (480)
152 2ct0_A Non-SMC element 1 homol 97.1 0.00042 1.4E-08 54.5 4.5 48 274-321 15-64 (74)
153 2db0_A 253AA long hypothetical 97.1 0.092 3.2E-06 48.4 20.3 211 404-637 32-244 (253)
154 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0012 4.1E-08 70.7 9.1 242 363-635 175-432 (800)
155 1vyx_A ORF K3, K3RING; zinc-bi 97.0 0.00053 1.8E-08 51.7 4.3 48 273-320 5-58 (60)
156 2iw3_A Elongation factor 3A; a 97.0 0.0057 1.9E-07 71.5 14.0 261 362-641 14-282 (986)
157 4ady_A RPN2, 26S proteasome re 96.8 0.078 2.7E-06 61.4 21.7 205 361-600 471-679 (963)
158 4ffb_C Protein STU2; tubulin f 96.8 0.021 7.1E-07 57.2 15.0 186 367-557 14-213 (278)
159 3vk6_A E3 ubiquitin-protein li 96.7 0.00096 3.3E-08 54.7 3.6 46 276-321 3-49 (101)
160 3k1l_B Fancl; UBC, ring, RWD, 96.3 0.00074 2.5E-08 68.2 0.6 49 273-321 307-373 (381)
161 2fv2_A RCD1 required for cell 95.9 0.28 9.5E-06 47.7 16.2 227 363-595 4-266 (268)
162 2of3_A ZYG-9; multifunctional 95.8 0.066 2.2E-06 53.0 11.8 180 365-556 49-236 (266)
163 1wa5_C Importin alpha RE-expor 95.4 0.048 1.6E-06 64.6 11.0 251 377-637 376-668 (960)
164 4ffb_C Protein STU2; tubulin f 95.2 0.14 4.7E-06 51.0 11.9 187 447-640 12-213 (278)
165 2fv2_A RCD1 required for cell 94.3 0.79 2.7E-05 44.5 14.0 94 544-637 73-172 (268)
166 1lrv_A LRV, leucine-rich repea 94.0 0.074 2.5E-06 52.1 6.3 45 406-467 100-144 (244)
167 3i2d_A E3 SUMO-protein ligase 94.0 0.048 1.6E-06 56.0 5.0 63 274-336 249-315 (371)
168 2jun_A Midline-1; B-BOX, TRIM, 93.9 0.02 7E-07 47.8 1.9 34 273-306 2-38 (101)
169 1wa5_C Importin alpha RE-expor 93.7 1.7 5.7E-05 51.3 18.6 219 373-596 416-669 (960)
170 1upk_A MO25 protein; transfera 93.4 0.96 3.3E-05 45.8 13.3 195 362-558 78-285 (341)
171 4fo9_A E3 SUMO-protein ligase 93.1 0.081 2.8E-06 54.1 5.0 64 273-336 214-281 (360)
172 3ebb_A Phospholipase A2-activa 92.8 0.85 2.9E-05 46.0 12.1 136 499-636 161-303 (304)
173 2f31_A Diaphanous protein homo 92.6 1.6 5.4E-05 42.2 13.5 175 367-542 5-214 (233)
174 3ebb_A Phospholipase A2-activa 92.6 0.92 3.1E-05 45.8 12.1 161 363-525 104-273 (304)
175 3nw0_A Non-structural maintena 92.5 0.092 3.1E-06 51.2 4.3 49 274-322 180-230 (238)
176 2of3_A ZYG-9; multifunctional 92.4 0.55 1.9E-05 46.3 9.8 180 408-602 50-241 (266)
177 3eg5_B Protein diaphanous homo 91.5 3.8 0.00013 42.7 15.7 177 365-543 69-281 (383)
178 1lrv_A LRV, leucine-rich repea 91.3 0.45 1.5E-05 46.5 7.8 88 369-508 57-144 (244)
179 2x1g_F Cadmus; transport prote 90.9 7.8 0.00027 45.4 19.6 172 457-638 476-662 (971)
180 2x1g_F Cadmus; transport prote 90.0 11 0.00037 44.2 19.7 211 416-639 476-722 (971)
181 2x19_B Importin-13; nuclear tr 89.8 24 0.00082 41.1 22.5 218 362-598 24-269 (963)
182 2bnx_A Diaphanous protein homo 89.3 6.3 0.00022 41.0 15.1 177 366-543 8-219 (386)
183 3oc3_A Helicase MOT1, MOT1; re 89.3 1.5 5.1E-05 47.5 10.0 186 377-592 243-431 (800)
184 3u0r_A Apoptosis inhibitor 5; 89.1 7.9 0.00027 41.1 15.3 131 362-511 29-159 (507)
185 2x19_B Importin-13; nuclear tr 87.7 9.5 0.00032 44.6 17.0 173 455-637 459-644 (963)
186 3u0r_A Apoptosis inhibitor 5; 86.3 2.9 0.0001 44.4 10.0 120 497-635 39-159 (507)
187 1upk_A MO25 protein; transfera 85.2 20 0.00067 36.3 15.0 156 482-637 74-236 (341)
188 3eg5_B Protein diaphanous homo 83.8 9.6 0.00033 39.6 12.7 143 485-627 108-282 (383)
189 2f31_A Diaphanous protein homo 83.7 6.8 0.00023 37.6 10.8 132 500-631 68-220 (233)
190 1weo_A Cellulose synthase, cat 83.5 1.7 5.9E-05 34.5 5.0 48 274-321 16-70 (93)
191 3m1i_C Exportin-1; heat repeat 83.1 14 0.00049 43.7 15.5 221 361-598 15-264 (1049)
192 3c2g_A SYS-1 protein; beta-cat 82.7 19 0.00065 36.5 13.4 110 428-538 266-378 (619)
193 3c2g_A SYS-1 protein; beta-cat 82.0 32 0.0011 34.9 14.7 112 510-622 266-379 (619)
194 3ibv_A Exportin-T; karyopherin 81.8 48 0.0016 38.9 19.1 220 363-599 7-262 (980)
195 4hat_C Exportin-1; heat repeat 79.6 5.4 0.00019 47.2 10.0 141 374-518 465-621 (1023)
196 3ibv_A Exportin-T; karyopherin 79.2 52 0.0018 38.6 18.2 205 327-556 21-260 (980)
197 1mhq_A ADP-ribosylation factor 78.9 10 0.00036 33.6 9.4 74 360-433 36-116 (148)
198 4hat_C Exportin-1; heat repeat 78.8 30 0.001 40.9 16.0 219 361-597 15-263 (1023)
199 3l9t_A Putative uncharacterize 78.4 17 0.00057 34.9 11.1 142 448-608 74-218 (240)
200 1lsh_A Lipovitellin (LV-1N, LV 78.4 67 0.0023 38.0 19.0 199 362-594 311-540 (1056)
201 2bnx_A Diaphanous protein homo 78.0 16 0.00055 37.9 12.0 130 500-629 72-222 (386)
202 3gjx_A Exportin-1; transport, 77.3 43 0.0015 39.7 16.6 220 360-598 26-276 (1073)
203 1x5b_A Signal transducing adap 76.1 9.9 0.00034 34.3 8.5 74 360-433 50-125 (163)
204 1juq_A ADP-ribosylation factor 73.6 12 0.00041 34.1 8.4 74 360-433 48-128 (171)
205 3a6p_A Exportin-5; exportin-5, 73.0 55 0.0019 39.3 16.6 218 364-599 13-278 (1204)
206 2cs3_A Protein C14ORF4, MY039 70.2 3.8 0.00013 31.8 3.5 36 272-307 13-52 (93)
207 3l9t_A Putative uncharacterize 69.9 30 0.001 33.1 10.5 138 362-520 70-212 (240)
208 3qml_C Protein SLS1, nucleotid 69.0 59 0.002 32.3 12.7 147 486-638 22-188 (315)
209 3ldz_A STAM-1, signal transduc 67.7 8.6 0.0003 33.7 5.9 71 568-638 42-113 (140)
210 3ldz_A STAM-1, signal transduc 66.1 6.6 0.00023 34.5 4.8 74 360-433 40-114 (140)
211 1x5b_A Signal transducing adap 66.0 11 0.00039 33.9 6.5 71 568-638 52-124 (163)
212 3qml_C Protein SLS1, nucleotid 65.9 51 0.0017 32.8 11.5 145 447-596 24-188 (315)
213 1vdy_A Hypothetical protein (R 65.3 9.9 0.00034 33.4 5.7 73 569-641 50-132 (140)
214 3m1i_C Exportin-1; heat repeat 65.3 38 0.0013 40.0 12.7 101 373-475 464-570 (1049)
215 1lsh_A Lipovitellin (LV-1N, LV 64.7 72 0.0025 37.8 14.8 163 407-599 394-578 (1056)
216 3mjh_B Early endosome antigen 64.6 1.5 5.2E-05 28.4 0.2 16 274-289 5-20 (34)
217 1mhq_A ADP-ribosylation factor 62.0 13 0.00045 32.9 6.0 71 568-638 38-115 (148)
218 3g2s_A C-terminal fragment of 60.6 16 0.00056 32.3 6.4 74 360-433 46-126 (149)
219 2jvx_A NF-kappa-B essential mo 60.4 2.5 8.5E-05 26.1 0.6 17 273-289 2-18 (28)
220 1juq_A ADP-ribosylation factor 60.4 15 0.00052 33.4 6.2 71 568-638 50-127 (171)
221 2kkx_A Uncharacterized protein 58.7 8.2 0.00028 31.4 3.5 53 271-324 24-82 (102)
222 3g2s_A C-terminal fragment of 55.5 22 0.00074 31.5 6.2 71 568-638 48-125 (149)
223 1dvp_A HRS, hepatocyte growth 53.4 29 0.00099 32.8 7.3 73 360-432 40-114 (220)
224 3pwf_A Rubrerythrin; non heme 53.2 31 0.0011 31.2 7.1 29 272-320 136-164 (170)
225 3zyq_A Hepatocyte growth facto 53.1 31 0.0011 32.8 7.4 74 360-433 43-118 (226)
226 3gae_A Protein DOA1; UFD3, CDC 48.7 24 0.00081 34.3 5.8 130 379-518 71-220 (253)
227 1elk_A Target of MYB1; superhe 48.0 78 0.0027 28.1 8.8 74 360-433 51-130 (157)
228 6rxn_A Rubredoxin; electron tr 47.4 5.8 0.0002 27.6 0.9 14 270-283 26-39 (46)
229 1m3v_A FLIN4, fusion of the LI 47.3 11 0.00037 32.1 2.8 51 273-324 31-84 (122)
230 3zyq_A Hepatocyte growth facto 45.9 34 0.0012 32.5 6.4 71 568-638 45-117 (226)
231 2o35_A Hypothetical protein DU 45.7 7.6 0.00026 31.5 1.4 13 295-307 42-54 (105)
232 3fyb_A Protein of unknown func 44.9 8 0.00027 31.3 1.4 13 295-307 41-53 (104)
233 1dvp_A HRS, hepatocyte growth 44.3 31 0.0011 32.6 5.8 71 568-638 42-114 (220)
234 2xqn_T Testin, TESS; metal-bin 43.5 13 0.00043 31.7 2.7 48 272-322 28-76 (126)
235 2kw6_A Cyclin-dependent kinase 43.2 23 0.00079 26.2 3.5 39 65-106 15-56 (65)
236 1e8j_A Rubredoxin; iron-sulfur 42.6 9.1 0.00031 27.4 1.3 15 269-283 31-45 (52)
237 4rxn_A Rubredoxin; electron tr 41.6 8 0.00027 27.9 0.9 14 270-283 32-45 (54)
238 2jne_A Hypothetical protein YF 41.3 1.4 4.7E-05 35.7 -3.5 42 274-321 32-73 (101)
239 3a6p_A Exportin-5; exportin-5, 41.3 5.3E+02 0.018 30.7 18.2 177 372-556 57-276 (1204)
240 2ko5_A Ring finger protein Z; 40.6 14 0.00049 29.7 2.3 50 271-323 25-75 (99)
241 2kn9_A Rubredoxin; metalloprot 37.1 12 0.00041 29.4 1.3 15 269-283 55-69 (81)
242 1yk4_A Rubredoxin, RD; electro 36.4 11 0.00037 27.0 0.9 14 270-283 31-44 (52)
243 2v3b_B Rubredoxin 2, rubredoxi 36.1 11 0.00037 27.3 0.8 14 270-283 32-45 (55)
244 1elk_A Target of MYB1; superhe 34.9 64 0.0022 28.6 6.0 71 568-638 53-129 (157)
245 2xjy_A Rhombotin-2; oncoprotei 34.8 33 0.0011 29.1 4.0 49 272-321 27-78 (131)
246 1sz9_A PCF11 protein; RNA poly 34.6 1.1E+02 0.0037 26.7 7.3 71 568-638 43-113 (144)
247 2kre_A Ubiquitin conjugation f 34.3 22 0.00074 29.1 2.5 34 273-308 62-95 (100)
248 2m1l_A Cyclin-dependent kinase 33.5 41 0.0014 25.1 3.6 39 65-106 19-60 (69)
249 3gae_A Protein DOA1; UFD3, CDC 33.3 33 0.0011 33.2 4.1 132 497-632 101-251 (253)
250 1dx8_A Rubredoxin; electron tr 33.2 13 0.00044 28.4 0.9 14 270-283 36-49 (70)
251 3pst_A Protein DOA1; protein d 32.6 1.2E+02 0.0042 31.5 8.5 129 379-517 243-391 (425)
252 1lko_A Rubrerythrin all-iron(I 31.5 42 0.0014 30.9 4.3 28 274-320 155-182 (191)
253 2rgt_A Fusion of LIM/homeobox 31.3 51 0.0017 29.5 4.8 48 272-322 31-78 (169)
254 1yuz_A Nigerythrin; rubrythrin 31.0 57 0.002 30.3 5.2 28 273-320 170-197 (202)
255 2jtn_A LIM domain-binding prot 30.7 34 0.0012 31.1 3.6 49 272-323 85-133 (182)
256 3l3f_X Protein DOA1, DOA1/UFD3 30.2 87 0.003 32.0 6.8 128 379-516 180-327 (362)
257 1iml_A CRIP, cysteine rich int 29.8 43 0.0015 25.3 3.5 46 272-320 25-72 (76)
258 1s24_A Rubredoxin 2; electron 29.8 16 0.00055 29.1 0.9 14 270-283 64-77 (87)
259 4atg_A TAF6; transcription, TF 28.3 3.1E+02 0.01 25.2 9.6 127 405-537 41-178 (196)
260 1rut_X Flinc4, fusion protein 28.1 23 0.00077 32.6 1.8 49 272-321 30-81 (188)
261 2xpp_A IWS1, ECU08_0440; trans 26.6 3.2E+02 0.011 23.8 9.3 82 554-639 47-136 (145)
262 1wgm_A Ubiquitin conjugation f 26.0 34 0.0012 27.7 2.3 33 274-308 57-89 (98)
263 3gjx_A Exportin-1; transport, 25.9 5E+02 0.017 30.6 13.1 180 446-640 29-237 (1073)
264 2k5c_A Uncharacterized protein 25.2 19 0.00065 27.9 0.6 54 275-328 9-70 (95)
265 1wig_A KIAA1808 protein; LIM d 24.4 31 0.0011 26.1 1.7 36 272-307 29-66 (73)
266 2jrp_A Putative cytoplasmic pr 23.9 5.2 0.00018 31.4 -2.9 41 275-321 3-43 (81)
267 3pst_A Protein DOA1; protein d 22.9 3.6E+02 0.012 28.0 9.9 132 497-632 273-423 (425)
268 2d8x_A Protein pinch; LIM doma 22.8 54 0.0018 24.2 2.8 35 272-306 29-64 (70)
269 3lay_A Zinc resistance-associa 22.7 2.6E+02 0.0088 25.2 7.8 55 143-200 66-120 (175)
270 2cup_A Skeletal muscle LIM-pro 22.4 30 0.001 27.8 1.3 47 272-321 31-78 (101)
271 2fiy_A Protein FDHE homolog; F 22.4 9.2 0.00032 38.4 -2.2 46 272-318 180-231 (309)
272 2yru_A Steroid receptor RNA ac 21.3 2.3E+02 0.008 23.7 6.7 41 52-97 34-74 (118)
273 1wil_A KIAA1045 protein; ring 21.3 1E+02 0.0035 24.2 4.0 35 269-304 10-47 (89)
274 1x61_A Thyroid receptor intera 21.1 1E+02 0.0034 22.8 4.1 36 272-307 31-67 (72)
275 2d8z_A Four and A half LIM dom 21.1 65 0.0022 23.7 3.0 34 272-305 29-63 (70)
276 3uk3_C Zinc finger protein 217 21.0 45 0.0015 22.9 1.9 41 274-321 4-44 (57)
277 2l4z_A DNA endonuclease RBBP8, 20.7 55 0.0019 27.7 2.7 38 274-320 61-99 (123)
278 2d8x_A Protein pinch; LIM doma 20.6 42 0.0014 24.8 1.8 42 275-325 6-47 (70)
279 2dar_A PDZ and LIM domain prot 20.5 66 0.0023 25.2 3.0 37 276-321 27-63 (90)
280 2cur_A Skeletal muscle LIM-pro 20.4 88 0.003 22.9 3.6 35 272-306 29-64 (69)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=1.4e-30 Score=274.87 Aligned_cols=263 Identities=21% Similarity=0.222 Sum_probs=237.6
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-----------CChHHHHHHHHHHHHhcCCcc-hHHHHHh-
Q 040749 377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-----------PDSKILEHAVTAVLNLSIDES-NKRLIAQ- 443 (643)
Q Consensus 377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~d~~~~~~a~~~L~nLs~~~~-~k~~i~~- 443 (643)
..+.+|++.|.+++. ++++|..|++.|+++.|+.+|.+ .++.+|.+|+++|.||+.+++ +|..+..
T Consensus 47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 456689999999996 48999999999999999999952 246789999999999998665 7877764
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHHhcc-CCcc
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSL-NQAN 519 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n 519 (643)
.|+||.|+.+|+++++++++.|+++|.+|+.. +++|..+.+.|+||+|+.+| ++++..+++.|+.+|+||+. .+++
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n 205 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 205 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence 56699999999999999999999999999974 57899999999999999975 66788999999999999998 6688
Q ss_pred hHHHH-HcCChHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHH
Q 040749 520 KARAI-DAGIVLPLMNLLEERNL----GMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREGTPKNKECATA 590 (643)
Q Consensus 520 ~~~lv-~~G~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~ 590 (643)
+..++ ..|+++.|+++|.++++ .+++.|+++|.||+. +++++..+.+.|+++.|+.+|++++..++++|++
T Consensus 206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~ 285 (354)
T 3nmw_A 206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG 285 (354)
T ss_dssp HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence 88888 69999999999987544 489999999999995 8999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+|.+|+.++++....+.+.|+++.|+.++.++++++++.|.+.|++|...
T Consensus 286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999988899999999999999999999999999999999999999864
No 2
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3.5e-30 Score=282.71 Aligned_cols=278 Identities=22% Similarity=0.260 Sum_probs=245.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLI 441 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i 441 (643)
.++.+++.|.+++++.|..|+..|++++.+++.++..+++.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..|
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 488999999999999999999999999988888899999999999999999999999999999999999986 8899999
Q ss_pred HhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc--------cC--------ChhhHH
Q 040749 442 AQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ--------NG--------TIRGKK 504 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~ 504 (643)
++.|+|+.|+++|. ++++++++.|+++|++|+..+++|..+++ |++|+|+.+|. ++ +..+.+
T Consensus 83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~ 161 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF 161 (457)
T ss_dssp HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence 99999999999999 88999999999999999999999999999 99999999993 22 345666
Q ss_pred HHHHHHHHhccCCcchHHHHHc-CChHHHHHHhcc------CChhhHHHHHHHHHHHhCC--------------------
Q 040749 505 DAVTALFNLSLNQANKARAIDA-GIVLPLMNLLEE------RNLGMVDEALSILLLLATH-------------------- 557 (643)
Q Consensus 505 ~A~~aL~nLs~~~~n~~~lv~~-G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~-------------------- 557 (643)
.|+++|+||+.+++++..+++. |+++.|+.+|.+ .+..+++.|+.+|.||+..
T Consensus 162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~ 241 (457)
T 1xm9_A 162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241 (457)
T ss_dssp HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence 9999999999988888889997 999999999985 4567899999999999731
Q ss_pred -------------------------------hhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHHH---
Q 040749 558 -------------------------------PEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSSF--- 602 (643)
Q Consensus 558 -------------------------------~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~--- 602 (643)
+++.+.+++.|+++.|+.+|.++ ++..++.|+++|.+||.++...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~ 321 (457)
T 1xm9_A 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321 (457)
T ss_dssp ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence 23445667778899999999864 6899999999999999875432
Q ss_pred H-HHHH-HCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 603 I-LAAL-QYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 603 ~-~~~~-~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
. +.++ +.|+++.|+.++.++++++++.|.++|++|.+..
T Consensus 322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 2 3334 6899999999999999999999999999998754
No 3
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.97 E-value=1.5e-29 Score=280.73 Aligned_cols=279 Identities=20% Similarity=0.251 Sum_probs=243.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC--cchHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID--ESNKR 439 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~--~~~k~ 439 (643)
..++.||++|.+++++.|..|++.|.+++..++++|..+++.|+||.|+.+|++++..+|++|+++|.||+.. +++|.
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 5699999999999999999999999999998999999999999999999999999999999999999999984 78999
Q ss_pred HHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc------------------cCCh
Q 040749 440 LIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ------------------NGTI 500 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~------------------~~~~ 500 (643)
.|++.|+|++|+.+|++ ++.+++++|+++|++||..+++|..|++ +++|+|+.++. ..+.
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~ 206 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE 206 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence 99999999999999997 5789999999999999999999999995 67999999872 1246
Q ss_pred hhHHHHHHHHHHhccCCcc-hHHHHH-cCChHHHHHHhcc------CChhhHHHHHHHHHHHhCCh--------------
Q 040749 501 RGKKDAVTALFNLSLNQAN-KARAID-AGIVLPLMNLLEE------RNLGMVDEALSILLLLATHP-------------- 558 (643)
Q Consensus 501 ~~~~~A~~aL~nLs~~~~n-~~~lv~-~G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~-------------- 558 (643)
.+++.|+++|+||+...++ +..+++ .|+++.|+.+|.+ .+...++.|+.+|.||+...
T Consensus 207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~ 286 (584)
T 3l6x_A 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA 286 (584)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence 8899999999999997755 888888 5667899999975 46678999999999998642
Q ss_pred ------------hhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHH---HHH-HHHHCCcHHHHHHHhhc
Q 040749 559 ------------EGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGANNSS---FIL-AALQYGVYEHLIQLTEG 621 (643)
Q Consensus 559 ------------~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~---~~~-~~~~~g~i~~L~~ll~~ 621 (643)
.+.+.+++.++++.|+.+|.. .++.++++|+++|.+||.+... ... .+.+.++++.|+.++.+
T Consensus 287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s 366 (584)
T 3l6x_A 287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN 366 (584)
T ss_dssp ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence 233445556778889999964 5799999999999999987522 222 33457899999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhc
Q 040749 622 GTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 622 g~~~~k~~A~~lL~~L~~~~ 641 (643)
+++++++.|.++|++|+...
T Consensus 367 ~~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 367 EHERVVKAASGALRNLAVDA 386 (584)
T ss_dssp SCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhCCh
Confidence 99999999999999998764
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=274.79 Aligned_cols=261 Identities=21% Similarity=0.222 Sum_probs=235.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-----------CChHHHHHHHHHHHHhcCCcc-hHHHHH-hcC
Q 040749 379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-----------PDSKILEHAVTAVLNLSIDES-NKRLIA-QQG 445 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~d~~~~~~a~~~L~nLs~~~~-~k~~i~-~~g 445 (643)
+.+|++.|.+++ .++++|..|.+.|++++|+.+|.. .++.++.+|+++|.||+.+++ ++..+. ..|
T Consensus 165 ~~qAv~aL~nls-~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G 243 (458)
T 3nmz_A 165 ICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 243 (458)
T ss_dssp THHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence 459999999998 469999999999999999999942 246789999999999998765 676675 456
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHHhcc-CCcchH
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSL-NQANKA 521 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n~~ 521 (643)
+||.|+.+|.++++++++.|+++|.+|+.. +++|..|++.|+||+|+.+| ++++..+++.|+.+|+||+. +++++.
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~ 323 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 799999999999999999999999999974 56889999999999999975 56788999999999999998 778888
Q ss_pred HHH-HcCChHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749 522 RAI-DAGIVLPLMNLLEERNL----GMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL 592 (643)
Q Consensus 522 ~lv-~~G~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 592 (643)
.++ ..|+++.|+.+|.+.++ .+++.|+++|.||+. ++++++.+.+.|+++.|+.+|.+++..++++|+++|
T Consensus 324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL 403 (458)
T 3nmz_A 324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL 403 (458)
T ss_dssp HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence 888 79999999999987544 489999999999984 889999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.+|+.++++....+.+.|+++.|+.++.++++++++.|.+.|++|..+
T Consensus 404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 999988899999999999999999999999999999999999999764
No 5
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=9e-29 Score=271.44 Aligned_cols=282 Identities=21% Similarity=0.206 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k 438 (643)
..+.++.|+++|.+++++.|..|++.|++++..++++|..|++.|+||.|+++|+ ++++++++.|+++|.||+.++++|
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~ 121 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence 5688999999999999999999999999999888999999999999999999999 889999999999999999999999
Q ss_pred HHHHhcCChHHHHHHhc--------CC--------CHHHHHHHHHHHHhccccccchhhhhcc-CChHHHHHHhccC---
Q 040749 439 RLIAQQGAIPAIIEILQ--------SG--------STEARENSAAALFSLSMLDENKITIGLS-DGIPPLVDLLQNG--- 498 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~--- 498 (643)
..+++ |+++.|+.+|. ++ +.++..+|+++|+||+..++++..+.+. |++++|+.+|+++
T Consensus 122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 200 (457)
T 1xm9_A 122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200 (457)
T ss_dssp HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence 99999 99999999993 33 3456669999999999888889999886 9999999888641
Q ss_pred --------------------------------------------------------------------------------
Q 040749 499 -------------------------------------------------------------------------------- 498 (643)
Q Consensus 499 -------------------------------------------------------------------------------- 498 (643)
T Consensus 201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 280 (457)
T 1xm9_A 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY 280 (457)
T ss_dssp TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence
Q ss_pred ----------------ChhhHHHHHHHHHHhccCCcch-----HHHH-HcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 499 ----------------TIRGKKDAVTALFNLSLNQANK-----ARAI-DAGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 499 ----------------~~~~~~~A~~aL~nLs~~~~n~-----~~lv-~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
++..++.|+++|.||+...... ..++ ++|++|.|+++|.+++.+++..|+++|.||+.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 1334556789999998755432 2234 58999999999999999999999999999999
Q ss_pred ChhhHHHhhcCCcHHHHHHHHhcCCh------HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHH
Q 040749 557 HPEGRHKIGQLSFIETLVEYIREGTP------KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRK 629 (643)
Q Consensus 557 ~~~~~~~i~~~g~i~~Lv~lL~~~s~------~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~ 629 (643)
+++.+..+.. |+++.|+++|..+++ .+...++.+|.+++.++++....+.+.|+++.|+.++.++ +++++++
T Consensus 361 ~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~ 439 (457)
T 1xm9_A 361 HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA 439 (457)
T ss_dssp SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence 9888877654 799999999997643 5777899999999998988999999999999999999999 9999999
Q ss_pred HHHHHHHHHhhccC
Q 040749 630 ANALLQLISKSEHL 643 (643)
Q Consensus 630 A~~lL~~L~~~~~~ 643 (643)
|.++|.++..+.++
T Consensus 440 A~~~L~~~~~~~~l 453 (457)
T 1xm9_A 440 ARLLLSDMWSSKEL 453 (457)
T ss_dssp HHHHHHTTSSSTTC
T ss_pred HHHHHHHHHcchhh
Confidence 99999999887664
No 6
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=4.9e-28 Score=277.18 Aligned_cols=280 Identities=15% Similarity=0.143 Sum_probs=252.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-----------------------------hhH---HHHHhcCCcH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-----------------------------ENR---ILIADCGAIP 407 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~ 407 (643)
+.+.++.|+++|++.+..++..|++.|.+++...+ .++ ..+++.|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 46899999999999999999999999999997542 123 6788999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh---c
Q 040749 408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG---L 484 (643)
Q Consensus 408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~---~ 484 (643)
.|+.+|+++++.+|+.|+++|.|++.+++++..+++.|++++|+.+|.++++..+++|+++|.+|+.+.+....+. .
T Consensus 499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~ 578 (810)
T 3now_A 499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS 578 (810)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence 9999999999999999999999999998999999999999999999999999999999999999987654443332 1
Q ss_pred cCChHHHHHHhccC-ChhhHHHHHHHHHHhccCC-cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 040749 485 SDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLNQ-ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRH 562 (643)
Q Consensus 485 ~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~ 562 (643)
.|++|+|+.+|.++ +...+..|+++|.||+..+ +++..++++|+++.|+.++.++++.++..|+++|+||+.+++.+.
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 47999999999865 4455679999999999875 678889999999999999999999999999999999999999988
Q ss_pred Hhhc-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 563 KIGQ-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQ-YGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 563 ~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
.+.+ .|+++.|+.++.+.+..++..|+++|.+|+.+++..++.+++ .|+++.|+.++.+++.++|+.|.++|.++..
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 8886 689999999999999999999999999999988888888888 8999999999999999999999999999865
No 7
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=4e-27 Score=262.02 Aligned_cols=280 Identities=20% Similarity=0.244 Sum_probs=253.8
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-ch
Q 040749 360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~ 437 (643)
+.|.+|.||++|+ ++++++|..|+++|.+++..+++++..+++.|+||.|+.+|++++..+++.|+++|+||+.+. ..
T Consensus 98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~ 177 (510)
T 3ul1_B 98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF 177 (510)
T ss_dssp HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 4588999999997 456899999999999999999999999999999999999999999999999999999999864 56
Q ss_pred HHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHH
Q 040749 438 KRLIAQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALF 511 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 511 (643)
+..+.+.|++++|+.+|...+ .....+++++|.+++........+.. .+++|.|+.++.+++..++..|+++|.
T Consensus 178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888889999999999998653 46788999999999987665555544 789999999999999999999999999
Q ss_pred HhccCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHH
Q 040749 512 NLSLNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECAT 589 (643)
Q Consensus 512 nLs~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~ 589 (643)
+|+..+.++.. +++.|+++.|+.+|.+++..++..|+.+|.|++. ++..+..+.+.|+++.|+.+|.+.++.++..|+
T Consensus 258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~ 337 (510)
T 3ul1_B 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 337 (510)
T ss_dssp HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence 99987776655 5679999999999999999999999999999977 566778889999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
++|.+|+.+++.....+.+.|+++.|+.++.+++.++|+.|.++|.++..
T Consensus 338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998864
No 8
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=1e-26 Score=259.97 Aligned_cols=280 Identities=20% Similarity=0.237 Sum_probs=255.1
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch
Q 040749 360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~ 437 (643)
+.+.++.|++.|. +.+++.|..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +++
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 5689999999997 55699999999999999999999999999999999999999999999999999999999986 567
Q ss_pred HHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHH
Q 040749 438 KRLIAQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALF 511 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 511 (643)
+..+...|++++|+.+|..++ .....+++++|.+++........+.. .+++|.|+.++.++++.++..|+++|.
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~ 276 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 276 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 888999999999999998653 46788999999999987665555444 789999999999999999999999999
Q ss_pred HhccCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHH
Q 040749 512 NLSLNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECAT 589 (643)
Q Consensus 512 nLs~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~ 589 (643)
+|+..+.++.. +++.|+++.|+.+|.+++..++..|+.+|.|++. ++..+..+.+.|+++.|+.+|.+.++.++..|+
T Consensus 277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 99987776655 6689999999999999999999999999999987 566788889999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus 357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998864
No 9
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=7.6e-28 Score=253.96 Aligned_cols=243 Identities=19% Similarity=0.219 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHH
Q 040749 360 QKEEIVSLVEQLSS-----------SKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTA 427 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s-----------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~ 427 (643)
+.++++.|+.+|.+ .+++.|..|++.|.+++..++.+|..+.. .|+||.|+.+|+++++++++.|+++
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a 150 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV 150 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHH
Confidence 55889999999953 24678999999999999888889988865 5669999999999999999999999
Q ss_pred HHHhcCC--cchHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccc-cccchhhhh-ccCChHHHHHHhccCCh--
Q 040749 428 VLNLSID--ESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSM-LDENKITIG-LSDGIPPLVDLLQNGTI-- 500 (643)
Q Consensus 428 L~nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~i~~Lv~lL~~~~~-- 500 (643)
|.||+.. +++|..|++.|+|+.|+++| ++++.++++.|+.+|++|+. .+++|..|+ ..|++|.|+.+|.+++.
T Consensus 151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence 9999984 56899999999999999975 66789999999999999998 668899998 68999999999987755
Q ss_pred --hhHHHHHHHHHHhcc----CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh-CChhhHHHhhcCCcHHHH
Q 040749 501 --RGKKDAVTALFNLSL----NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA-THPEGRHKIGQLSFIETL 573 (643)
Q Consensus 501 --~~~~~A~~aL~nLs~----~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La-~~~~~~~~i~~~g~i~~L 573 (643)
.+++.|+++|+||+. .++++..+++.|+++.|+.+|.+++..+++.|+++|+||+ .+++++..+.+.|+++.|
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L 310 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 310 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence 489999999999996 7788888999999999999999999999999999999999 478999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 040749 574 VEYIREGTPKNKECATAVLLELGANNSSF 602 (643)
Q Consensus 574 v~lL~~~s~~~~e~A~~~L~~L~~~~~~~ 602 (643)
+++++++++.+++.|+++|.+|+.+++..
T Consensus 311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 311 KNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999987754
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=1.9e-27 Score=258.40 Aligned_cols=280 Identities=20% Similarity=0.194 Sum_probs=245.0
Q ss_pred hhHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhhccCchhHHHHHhcCCc----------HHHHHhCCCC
Q 040749 359 EQKEEIVSLVEQLSSS------------KLEVQKEAVRKIRLLSKENPENRILIADCGAI----------PPLVQLLPYP 416 (643)
Q Consensus 359 ~~~~~i~~Lv~~L~s~------------~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~~~ 416 (643)
...+.+|.||+.|+.. +++.|.+|+++|.+++..+++......+.|++ +.+++++.+.
T Consensus 67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (458)
T 3nmz_A 67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146 (458)
T ss_dssp HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 4568899999999963 37999999999999999999998888888888 6677778765
Q ss_pred C--hH-----HHH-------HHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC-----------CCHHHHHHHHHHHHh
Q 040749 417 D--SK-----ILE-------HAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS-----------GSTEARENSAAALFS 471 (643)
Q Consensus 417 d--~~-----~~~-------~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~e~~~~Aa~~L~~ 471 (643)
+ .+ +++ +|+++|.|++.++++|..|++.|++++|+.+|.. .++.++.+|+++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n 226 (458)
T 3nmz_A 147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226 (458)
T ss_dssp SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence 2 11 333 9999999999999999999999999999999952 246789999999999
Q ss_pred cccccc-chhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhccC--CcchHHHHHcCChHHHHHHh-ccCChhhHHH
Q 040749 472 LSMLDE-NKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN--QANKARAIDAGIVLPLMNLL-EERNLGMVDE 546 (643)
Q Consensus 472 Ls~~~~-~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~lv~~G~v~~Lv~lL-~~~~~~~~~~ 546 (643)
|+..++ ++..+.. .|+||.|+.+|++++..++..|+++|.||+.. ++++..+++.|+++.|+++| .+.+..+++.
T Consensus 227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~ 306 (458)
T 3nmz_A 227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS 306 (458)
T ss_dssp HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence 998765 6666654 57799999999999999999999999999985 46788899999999999986 4467889999
Q ss_pred HHHHHHHHhC-ChhhHHHhh-cCCcHHHHHHHHhcCCh----HHHHHHHHHHHHHhc---CCHHHHHHHHHCCcHHHHHH
Q 040749 547 ALSILLLLAT-HPEGRHKIG-QLSFIETLVEYIREGTP----KNKECATAVLLELGA---NNSSFILAALQYGVYEHLIQ 617 (643)
Q Consensus 547 Al~~L~~La~-~~~~~~~i~-~~g~i~~Lv~lL~~~s~----~~~e~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~ 617 (643)
|+.+|+||+. +.+++..+. ..|+++.|+.+|.++++ .+++.|+++|.+|+. .+++....+.+.|+++.|+.
T Consensus 307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~ 386 (458)
T 3nmz_A 307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ 386 (458)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence 9999999999 778888888 78999999999997764 489999999999997 68888899999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHHH
Q 040749 618 LTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 618 ll~~g~~~~k~~A~~lL~~L~ 638 (643)
++.+++..+++.|.++|.+|.
T Consensus 387 LL~~~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 387 HLKSHSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HSSCSCHHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHHHHHHHHHHHH
Confidence 999999999999999999997
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=2.7e-27 Score=262.79 Aligned_cols=281 Identities=22% Similarity=0.210 Sum_probs=236.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcch
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~ 437 (643)
..+.|+.||++|.+++.++|..|+++|++|+.. ++++|..|++.|+||.|+.+|++ .+..++++|+.+|+|||.++++
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 458899999999999999999999999999985 69999999999999999999997 5789999999999999999999
Q ss_pred HHHHHhcCChHHHHHHhc------------------CCCHHHHHHHHHHHHhcccccc-chhhhhc-cCChHHHHHHhcc
Q 040749 438 KRLIAQQGAIPAIIEILQ------------------SGSTEARENSAAALFSLSMLDE-NKITIGL-SDGIPPLVDLLQN 497 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~-~g~i~~Lv~lL~~ 497 (643)
|..|+. ++++.|+++|. ..+.+++++|+++|+|||..++ ++..+.+ .|+++.||.++++
T Consensus 168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~ 246 (584)
T 3l6x_A 168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA 246 (584)
T ss_dssp HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999985 57999999872 1247899999999999998764 4777776 4556677776643
Q ss_pred --------------------------------------------------------------------------CChhhH
Q 040749 498 --------------------------------------------------------------------------GTIRGK 503 (643)
Q Consensus 498 --------------------------------------------------------------------------~~~~~~ 503 (643)
.++.++
T Consensus 247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~ 326 (584)
T 3l6x_A 247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326 (584)
T ss_dssp HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence 123344
Q ss_pred HHHHHHHHHhccCCc-----chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh
Q 040749 504 KDAVTALFNLSLNQA-----NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR 578 (643)
Q Consensus 504 ~~A~~aL~nLs~~~~-----n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~ 578 (643)
+.|++||.||+.... ++..+.+.|+++.|+++|.+++..++..|+++|.||+.++.++..| ..|+++.|+.+|.
T Consensus 327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence 555566666654321 1222334788999999999999999999999999999998888776 6799999999998
Q ss_pred cC--------ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHhhcc
Q 040749 579 EG--------TPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG--TSRAQRKANALLQLISKSEH 642 (643)
Q Consensus 579 ~~--------s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~L~~~~~ 642 (643)
++ +..+...|+++|.+|+..++.+.+.+.+.|+++.|+.++.++ .+.+++.|..+|.+|..+.+
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e 479 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE 479 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence 76 457788999999999999999999999999999999999987 89999999999999986643
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=4.8e-27 Score=269.03 Aligned_cols=282 Identities=16% Similarity=0.144 Sum_probs=253.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
+.+.++.|+++|.++++++|.+|++.|.+++ .++++|..+++.|++|+|+.+|.+++...++.|+++|.||+.+.+...
T Consensus 493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~ 571 (810)
T 3now_A 493 NEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV 571 (810)
T ss_dssp HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence 4588999999999999999999999999999 567899999999999999999999999999999999999987544333
Q ss_pred HH---HhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749 440 LI---AQQGAIPAIIEILQSG-STEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514 (643)
Q Consensus 440 ~i---~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs 514 (643)
.+ ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+
T Consensus 572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa 651 (810)
T 3now_A 572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV 651 (810)
T ss_dssp HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 22 1246999999999866 455667899999999977 578888999999999999999999999999999999999
Q ss_pred cCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhc-CCcHHHHHHHHhcCChHHHHHHHHH
Q 040749 515 LNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQ-LSFIETLVEYIREGTPKNKECATAV 591 (643)
Q Consensus 515 ~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~ 591 (643)
.+++.+..+++ .|+++.|+.++.+.+..++..|+++|+||+. ++...+.+++ .|+++.|+.++.+++...+..|+++
T Consensus 652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 99998888886 7999999999999999999999999999998 7888888888 8999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC---CHHHHHHHHHHHHHHHhhcc
Q 040749 592 LLELGANNSSFILAALQYGVYEHLIQLTEGG---TSRAQRKANALLQLISKSEH 642 (643)
Q Consensus 592 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g---~~~~k~~A~~lL~~L~~~~~ 642 (643)
|.+++.++++....+.+.|+++.|+.++... ++++.+.|...|.++-++..
T Consensus 732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 9999998888889999999999999998654 78999999999999876543
No 13
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=2.3e-25 Score=248.77 Aligned_cols=281 Identities=21% Similarity=0.221 Sum_probs=257.2
Q ss_pred hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch
Q 040749 360 QKEEIVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~ 437 (643)
..+.++.|++.|.+++ +.+|..|++.|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.|++.+ +.+
T Consensus 115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~ 194 (528)
T 4b8j_A 115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC 194 (528)
T ss_dssp HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 4578999999999876 99999999999999988899999999999999999999999999999999999999986 456
Q ss_pred HHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 438 KRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
+..+...|+++.|+.+| .+.++.++..|+++|.+|+............|+++.|+.+|.++++.++..|+++|.+|+..
T Consensus 195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 88888999999999999 56789999999999999998765555555689999999999999999999999999999987
Q ss_pred Ccch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHH
Q 040749 517 QANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLL 593 (643)
Q Consensus 517 ~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~ 593 (643)
.+++ ..+++.|+++.|+.+|.++++.++..|+.+|.+|+. ++..+..+.+.|+++.|+.+|.++ ++.++..|+++|.
T Consensus 275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS 354 (528)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 7665 457789999999999999999999999999999998 566788888999999999999998 8999999999999
Q ss_pred HHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 594 ELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 594 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+|+.+++.....+.+.|+++.|+.++.++++.++..|.++|.++...
T Consensus 355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 99998888888889999999999999999999999999999998764
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.94 E-value=6.9e-26 Score=252.06 Aligned_cols=278 Identities=19% Similarity=0.183 Sum_probs=245.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhh-ccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcC-CcchH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLS-KENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSI-DESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~-~~~~k 438 (643)
..++.+|+.+.|++++.|.+|+..+|.+. ++.......+++.|+||.|+++|++. ++.+|..|+++|.|++. +++++
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 35899999999999999999999999754 44444467899999999999999755 68999999999999987 56778
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCC-----hhhHHHHHHHHHH
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGT-----IRGKKDAVTALFN 512 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~A~~aL~n 512 (643)
..+++.|+||.|+.+|.+++.++++.|+++|++|+.+ +.++..+.+.|++++|+.+|...+ ......++++|.|
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999976 567888889999999999998654 3457889999999
Q ss_pred hccCCcchHHH-HHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHH
Q 040749 513 LSLNQANKARA-IDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP-EGRHKIGQLSFIETLVEYIREGTPKNKECATA 590 (643)
Q Consensus 513 Ls~~~~n~~~l-v~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~ 590 (643)
++.+......+ ...|+++.|+.++.+.++.++..|+++|.+|+.+. +....+.+.|+++.|+.+|.+.++.++..|+.
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~ 296 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence 99876655443 34789999999999999999999999999999865 45566778999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus 297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999888999999999999999999999999999999999864
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.94 E-value=4.8e-25 Score=246.44 Aligned_cols=280 Identities=19% Similarity=0.237 Sum_probs=251.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCCh-----HHHHHHHHHHHHhcCC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS-----KILEHAVTAVLNLSID 434 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~-----~~~~~a~~~L~nLs~~ 434 (643)
+.+.++.|+.+|.+++.+++..|+++|++++.+++.+|..+.+.|++++|+.+|..++. .++.+++++|.|++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999999999999999999987643 4678999999999987
Q ss_pred cchH-HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc-hhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749 435 ESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN-KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512 (643)
Q Consensus 435 ~~~k-~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 512 (643)
.... ......|++|.|+.+|.+++++++..|+++|.+|+..+.. ...+...|+++.|+.+|.+++..++..|+.+|.|
T Consensus 240 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n 319 (529)
T 3tpo_A 240 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 319 (529)
T ss_dssp CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence 6543 3333578999999999999999999999999999977654 4556678999999999999999999999999999
Q ss_pred hccCC-cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHH
Q 040749 513 LSLNQ-ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATA 590 (643)
Q Consensus 513 Ls~~~-~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~ 590 (643)
|+... ..+..+++.|+++.|+.+|.++++.++..|+++|.||+. +++.+..+.+.|+++.|+.++.+++..++..|++
T Consensus 320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~ 399 (529)
T 3tpo_A 320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW 399 (529)
T ss_dssp HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence 98754 456678899999999999999999999999999999987 5677888899999999999999999999999999
Q ss_pred HHHHHhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 591 VLLELGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 591 ~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+|.+++.+ +++.+..+++.|+++.|+.++.+.++++...+...|.++.+
T Consensus 400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999864 66778889999999999999999999999999999988764
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2.3e-25 Score=222.90 Aligned_cols=239 Identities=25% Similarity=0.308 Sum_probs=223.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~ 440 (643)
+.++.|++.|.++++++|..|++.|.+++..+++++..+.+.|+++.|+++|++++..++..|+++|.+++.+ ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3689999999999999999999999999988888999999999999999999999999999999999999997 778999
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
+.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+++++++.++..|+++|.||+...+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 5677888899999999999999999999999999999999986554
Q ss_pred -hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 520 -KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 520 -~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
+..+++.|+++.|+.++.++++.++..|+.+|.+|+. +++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999998 67778889999999999999999999999999999999997
Q ss_pred CCH
Q 040749 598 NNS 600 (643)
Q Consensus 598 ~~~ 600 (643)
..+
T Consensus 242 ~~~ 244 (252)
T 4hxt_A 242 GGW 244 (252)
T ss_dssp TCB
T ss_pred CCC
Confidence 654
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=5.1e-25 Score=220.38 Aligned_cols=238 Identities=24% Similarity=0.279 Sum_probs=222.5
Q ss_pred CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhh
Q 040749 404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKIT 481 (643)
Q Consensus 404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~ 481 (643)
|++|.|+.+|.+++++++..|+++|.+++..+. ++..+++.|+++.|+.+|++++.+++..|+++|.+|+.. ++++..
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 678999999999999999999999999998654 888899999999999999999999999999999999987 788889
Q ss_pred hhccCChHHHHHHhccCChhhHHHHHHHHHHhc-cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chh
Q 040749 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS-LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPE 559 (643)
Q Consensus 482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~ 559 (643)
+.+.|+++.|+.+|+++++.++..|+++|.||+ ..++++..+++.|+++.|++++.++++.++..|+++|.+|+. ++.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~ 161 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 161 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 566778889999999999999999999999999999999998 455
Q ss_pred hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
.+..+.+.|+++.|+.++.+.++.++..|+++|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus 162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 66888899999999999999999999999999999999888888999999999999999999999999999999999986
Q ss_pred hc
Q 040749 640 SE 641 (643)
Q Consensus 640 ~~ 641 (643)
..
T Consensus 242 ~~ 243 (252)
T 4hxt_A 242 GG 243 (252)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=1.2e-24 Score=242.99 Aligned_cols=278 Identities=17% Similarity=0.199 Sum_probs=252.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCCCC-hHHHHHHHHHHHHhcCC-cchH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPYPD-SKILEHAVTAVLNLSID-ESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~d-~~~~~~a~~~L~nLs~~-~~~k 438 (643)
..++.+++.|.+++++.|..|++.|+.++.... .....+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 458999999999999999999999999975554 67888999999999999999886 99999999999999986 6778
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHHhccC
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~ 516 (643)
..++..|+++.|+.+|.+++++++..|+++|.+|+.. +.++..+...|++++|+.+| .+.+..++..|+++|.||+..
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 8888999999999999999999999999999999966 45678888899999999999 567889999999999999988
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh-HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG-RHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
.++.......|+++.|+.+|.++++.++..|+++|.+|+...+. ...+.+.|+++.|+.+|.+.++.++..|+.+|.+|
T Consensus 234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl 313 (528)
T 4b8j_A 234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI 313 (528)
T ss_dssp SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence 66666666799999999999999999999999999999986554 46778889999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 040749 596 GANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLISK 639 (643)
Q Consensus 596 ~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~~ 639 (643)
+.+++.....+++.|+++.|+.++.++ ++.++..|.++|.+|..
T Consensus 314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 998888888889999999999999999 99999999999999974
No 19
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1.5e-25 Score=225.04 Aligned_cols=237 Identities=26% Similarity=0.351 Sum_probs=218.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~ 440 (643)
...+.++..|.++++++|..|++.|+++...+++++..+.+.|++|.|+.+|+++++.++..|+++|.|++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 458899999999999999999999977665678889999999999999999999999999999999999998 5778999
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC-c
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ-A 518 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~ 518 (643)
+++.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+...|+++.|+.+|.+++..++..|+++|.||+... +
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999998888 77888999999999999999999999999999999855 4
Q ss_pred chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 519 NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 519 n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
++..+++.|+++.|+.++.++++.++..|+.+|.+|+. +++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|++
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 56668889999999999999999999999999999985 67788889999999999999999999999999999999985
Q ss_pred C
Q 040749 598 N 598 (643)
Q Consensus 598 ~ 598 (643)
+
T Consensus 252 ~ 252 (252)
T 4db8_A 252 H 252 (252)
T ss_dssp -
T ss_pred C
Confidence 3
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=2.3e-24 Score=240.92 Aligned_cols=281 Identities=19% Similarity=0.168 Sum_probs=255.9
Q ss_pred hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch
Q 040749 360 QKEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~ 437 (643)
..+.++.|++.|.+. ++.+|..|++.|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.|++.+ +.+
T Consensus 128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~ 207 (530)
T 1wa5_B 128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207 (530)
T ss_dssp HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence 357899999999987 899999999999999988889999999999999999999999999999999999999986 467
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
+..+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus 208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~ 287 (530)
T 1wa5_B 208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 287 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 888889999999999999999999999999999999765 4445555689999999999999999999999999999976
Q ss_pred Cc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 517 QA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 517 ~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
.+ ....+++.|+++.|+.+|.++++.++..|+.+|.+++. ++.....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus 288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN 367 (530)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54 46668889999999999999999999999999999997 46667778889999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
++.+++.....+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus 368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 9998888888888999999999999999999999999999998653
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=1.5e-23 Score=228.20 Aligned_cols=277 Identities=20% Similarity=0.202 Sum_probs=250.3
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-chHH
Q 040749 362 EEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SNKR 439 (643)
Q Consensus 362 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~k~ 439 (643)
+.++.|++.|.+. ++++|..|++.|.+++..+++++..+.+.|++|.|+.+|+++++.+++.|+++|.+++.+. .++.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~ 143 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD 143 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence 6899999999988 8999999999999999888888888999999999999999999999999999999999865 5688
Q ss_pred HHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccc--cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 440 LIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLD--ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
.+.+.|+++.|+.+|.+ .+.+++..|+++|.+|+... ..+..+. .+++|.|+.++.+++..++..|+++|.+|+..
T Consensus 144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 88899999999999995 68999999999999999654 3333333 79999999999999999999999999999986
Q ss_pred C-cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 517 Q-ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 517 ~-~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
. +++..+++.|+++.|+.+|.++++.++..|+.+|.+++.. +..+..+.+.|+++.|+.++.+.++.++..|+++|.+
T Consensus 223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~ 302 (450)
T 2jdq_A 223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN 302 (450)
T ss_dssp SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 4566678899999999999999999999999999999985 4456667888999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
++.+++.....+.+.|+++.|+.++.++++++|..|.++|.++..
T Consensus 303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 999888888888889999999999999999999999999999865
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1.2e-23 Score=235.14 Aligned_cols=278 Identities=17% Similarity=0.204 Sum_probs=252.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCC-cchH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSID-ESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~-~~~k 438 (643)
..++.+++.|.+++++.|..|+..|+.+... +..++..+++.|++|.|+.+|.++ ++.++..|+++|.+++.. ++.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 4589999999999999999999999998643 345677888999999999999997 899999999999999985 4567
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 517 (643)
..++..|+++.|+.+|.++++++++.|+++|.+|+.. +.++..+...|+++.|+.++.+.+..++..|+++|.||+.+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence 7788999999999999999999999999999999976 467888888999999999999989999999999999999876
Q ss_pred -cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 518 -ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 518 -~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
+........|+++.|+.+|.++++.++..|+++|.+|+.. ++....+.+.|+++.|+.++.+.++.++..|+.+|.++
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 5556667799999999999999999999999999999975 56678888899999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 596 GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 596 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
+.+++.....+.+.|+++.|+.++.++++.++..|.++|.++..
T Consensus 327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA 370 (530)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99888888888899999999999999999999999999999874
No 23
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=1.5e-24 Score=217.89 Aligned_cols=236 Identities=21% Similarity=0.245 Sum_probs=219.3
Q ss_pred CCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchhh
Q 040749 404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKIT 481 (643)
Q Consensus 404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~ 481 (643)
...+.++..|.++|++++..|+++|.++.. +++++..+++.|+++.|+.+|++++++++..|+++|.+++. +++++..
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 91 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 91 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 468899999999999999999999977544 66778889999999999999999999999999999999997 5788889
Q ss_pred hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chh
Q 040749 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPE 559 (643)
Q Consensus 482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~ 559 (643)
+.+.|+++.|+.+|+++++.++..|+++|.||+..++++ ..+++.|+++.|+++|.++++.++..|+++|.+|+. +++
T Consensus 92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 171 (252)
T 4db8_A 92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 171 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999999999999999999988 789999999999999999999999999999999998 556
Q ss_pred hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
.+..+.+.|+++.|+.++.++++.++..|+++|.+++.+++.....+.+.|+++.|+.++.++++++++.|.++|.+|..
T Consensus 172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 77788889999999999999999999999999999999898888899999999999999999999999999999998865
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=1.8e-23 Score=227.63 Aligned_cols=279 Identities=18% Similarity=0.165 Sum_probs=250.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCc--ch
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDE--SN 437 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~--~~ 437 (643)
.+.++.|++.|.+++++++..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+++.+. ..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 4689999999999999999999999999998888999999999999999999995 68999999999999999754 33
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
+..+ ..++++.|+.++.+++++++..++++|.+|+... +.+..+...|+++.|+.+|.++++.++..|+++|.||+..
T Consensus 186 ~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 264 (450)
T 2jdq_A 186 EFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264 (450)
T ss_dssp CGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred CHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence 3333 3789999999999999999999999999999754 5566677789999999999999999999999999999987
Q ss_pred Ccch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 517 QANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 517 ~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
.+.. ..+++.|+++.|+.+|.++++.++..|+++|.+++. +++....+.+.|+++.|+.++.++++.++..|+++|.+
T Consensus 265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN 344 (450)
T ss_dssp CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6654 447789999999999999899999999999999996 67777888888999999999999999999999999999
Q ss_pred HhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 595 LGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 595 L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
++.+ +++....+.+.|+++.|+.++.+++++++..|...|.++...
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 9976 677777788899999999999999999999999999988653
No 25
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=4.2e-23 Score=229.67 Aligned_cols=276 Identities=22% Similarity=0.274 Sum_probs=247.6
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH
Q 040749 361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k 438 (643)
.+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.+ +..+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 47899999999754 89999999999999995 467999999999999999999999999999999999999986 4567
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCCh-hhHHHHHHHHHHhccC
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTALFNLSLN 516 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~ 516 (643)
..+.+.|+++.|+.+|.+++++++..++.+|.+++.. ++++..+.+.|+++.|+.+|++++. ..+..++.+|.||+.+
T Consensus 137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~ 216 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 216 (529)
T ss_dssp HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence 8888999999999999999999999999999999974 6788889999999999999987754 5566788999999999
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
++++..+++.|+++.|+.++.++++.++..++++|.+|+....... ...++++.|++++.+.++.+++.|+++|.+|+
T Consensus 217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294 (529)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999899999999999999998653322 23478999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHh
Q 040749 597 ANNSSFILAALQYGVYEHLIQLTEGG--TSRAQRKANALLQLISK 639 (643)
Q Consensus 597 ~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~L~~ 639 (643)
.++++.+..+.+.|+++.|+.++.+. ++.++..|..+|.+|..
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 98888899999999999999999763 37999999999999864
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=208.06 Aligned_cols=195 Identities=18% Similarity=0.215 Sum_probs=175.9
Q ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchH
Q 040749 362 EEIVSLVEQLSSSKL--EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~--~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k 438 (643)
..++.++++|.++++ +.|..|+..|++++..++++|..+.+.|+||+|+.+|+++++++|+.|+++|.||+. +++||
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 568999999999888 889999999999999999999999999999999999999999999999999999998 57899
Q ss_pred HHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc---c-------------CChh
Q 040749 439 RLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ---N-------------GTIR 501 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~-------------~~~~ 501 (643)
..|++.|+||+|+++|. +++.+++++|+.+||+||..+.+|..|++ +++|+|+.++. + .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence 99999999999999998 57899999999999999999999999987 46999998763 1 2458
Q ss_pred hHHHHHHHHHHhccC-CcchHHHHHc-CChHHHHHHhcc------CChhhHHHHHHHHHHHhCC
Q 040749 502 GKKDAVTALFNLSLN-QANKARAIDA-GIVLPLMNLLEE------RNLGMVDEALSILLLLATH 557 (643)
Q Consensus 502 ~~~~A~~aL~nLs~~-~~n~~~lv~~-G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~ 557 (643)
++.+|+.+|+||+.. +++|..|.+. |+|+.|+.+++. .+...++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 999999999999985 4888889885 778999999976 2567899999999999864
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=232.05 Aligned_cols=276 Identities=22% Similarity=0.269 Sum_probs=248.2
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH
Q 040749 361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k 438 (643)
.+.++.|++.|.++ +++++..|+..|++++.. ++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.+ +..+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 47899999999865 899999999999999964 66999999999999999999999999999999999999986 4567
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchhhhhccCChHHHHHHhccCC-hhhHHHHHHHHHHhccC
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKITIGLSDGIPPLVDLLQNGT-IRGKKDAVTALFNLSLN 516 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~ 516 (643)
..+++.|+++.|+.+|++++++.+..++.+|.+|+. +++++..+.+.|+++.|+.+|++++ ...+..++.+|+||+.+
T Consensus 134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~ 213 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 213 (644)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence 778899999999999999999888888999999996 6788999999999999999998765 56778899999999999
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
++++..+++.|+++.|+.++.+.+..++..++++|.+|+...... ....++++.|++++.+.++.+++.|+++|.+|+
T Consensus 214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~ 291 (644)
T 2z6h_A 214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 291 (644)
T ss_dssp TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999989999999999999998754322 222478999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCcHHHHHHHhhcC-C-HHHHHHHHHHHHHHHh
Q 040749 597 ANNSSFILAALQYGVYEHLIQLTEGG-T-SRAQRKANALLQLISK 639 (643)
Q Consensus 597 ~~~~~~~~~~~~~g~i~~L~~ll~~g-~-~~~k~~A~~lL~~L~~ 639 (643)
.+++..+..+.+.|+++.|+.++.+. + +.++..|..+|.+|..
T Consensus 292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 99888889999999999999999873 3 7999999999999864
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.90 E-value=3.3e-23 Score=230.59 Aligned_cols=277 Identities=18% Similarity=0.185 Sum_probs=245.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcch
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~ 437 (643)
..+.++.|+.+|+++++.+|..|+..|.+++. ++.++..+.. .|+++.|+++|.++ ++.++..|+.+|.+|+.++++
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~ 93 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 93 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence 35789999999999999999999999999995 4567766665 58999999999754 899999999999999999889
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
+..+.+.|+++.|+.+|++++++++..|+++|.+|+..+ ..+..+.+.|++|.|+.++++++...+..++.+|.||+..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~ 173 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999874 5677777899999999999999999999999999999974
Q ss_pred -CcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 517 -QANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 517 -~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
++++..+++.|+++.|+.++.+. .......++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..|+++|.+
T Consensus 174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~ 253 (529)
T 1jdh_A 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 253 (529)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 67788899999999999999874 4556778899999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
|+...+... ...|+++.|+.++.++++.++..|.++|.+|...
T Consensus 254 l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~ 296 (529)
T 1jdh_A 254 LSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 296 (529)
T ss_dssp HHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred HhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 998654321 1237899999999999999999999999999764
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.89 E-value=9e-23 Score=233.46 Aligned_cols=277 Identities=18% Similarity=0.195 Sum_probs=247.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcch
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~ 437 (643)
..+.++.|+.+|++.++.+|..|+..|.+++.++ .++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.++++
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 3467999999999999999999999999999655 57777765 48999999999865 899999999999999999889
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL- 515 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~- 515 (643)
+..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ ..+..+.+.|+++.|+.+|++++.+.+..++.+|.+|+.
T Consensus 91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~ 170 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 170 (644)
T ss_dssp HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999774 566677789999999999999998888888999999996
Q ss_pred CCcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 516 NQANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 516 ~~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
+++++..+++.|+++.|+.+|.+. ....+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..|+++|.+
T Consensus 171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n 250 (644)
T 2z6h_A 171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN 250 (644)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 678888899999999999999874 4567889999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
||...+.. ....++++.|+.++.++++.++..|.++|.+|...
T Consensus 251 L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~ 293 (644)
T 2z6h_A 251 LSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 293 (644)
T ss_dssp HGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred Hhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 99765431 11237899999999999999999999999998763
No 30
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.4e-22 Score=225.97 Aligned_cols=280 Identities=17% Similarity=0.169 Sum_probs=240.3
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCch--------------------------------------hHHHH
Q 040749 360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPE--------------------------------------NRILI 400 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~--------------------------------------~r~~i 400 (643)
+.+.++.|+..+++ .+......++..|.+++...+. ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 56779999999995 6778889999999999863321 56778
Q ss_pred HhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHH---HHHHHHHHHHhcccccc
Q 040749 401 ADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTE---ARENSAAALFSLSMLDE 477 (643)
Q Consensus 401 ~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~~~ 477 (643)
.+.|+||.|+.+++++++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++.. ++.+|+.+|.+|+.+.+
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n 533 (778)
T 3opb_A 454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN 533 (778)
T ss_dssp TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999999999988654 89999999999997766
Q ss_pred chhhhhc---cCChHHHHHHhccC--Ch------------hhHHHHHHHHHHhccCCcc-----hHHHHHc-CChHHHHH
Q 040749 478 NKITIGL---SDGIPPLVDLLQNG--TI------------RGKKDAVTALFNLSLNQAN-----KARAIDA-GIVLPLMN 534 (643)
Q Consensus 478 ~k~~i~~---~g~i~~Lv~lL~~~--~~------------~~~~~A~~aL~nLs~~~~n-----~~~lv~~-G~v~~Lv~ 534 (643)
....+.. .|+|++|+.+|..+ .. ..+..|+.||.||+..++| +.++++. |+++.|..
T Consensus 534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~ 613 (778)
T 3opb_A 534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN 613 (778)
T ss_dssp HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence 5555532 49999999999832 11 1278999999999998743 7778995 99999999
Q ss_pred HhccCChhhHHHHHHHHHHHhCChhhH-HHhhcCC------cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040749 535 LLEERNLGMVDEALSILLLLATHPEGR-HKIGQLS------FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL 607 (643)
Q Consensus 535 lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g------~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~ 607 (643)
++.+++..++.+|+.+++||+.+++++ +.+...+ .++.|+.+++.++...|..|+++|.++++.++..+..++
T Consensus 614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll 693 (778)
T 3opb_A 614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL 693 (778)
T ss_dssp GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 999988999999999999999999885 4554322 378999999999999999999999999888888888888
Q ss_pred HC-CcHHHHHHHhhc--CCHHHHHHHHHHHHHHHh
Q 040749 608 QY-GVYEHLIQLTEG--GTSRAQRKANALLQLISK 639 (643)
Q Consensus 608 ~~-g~i~~L~~ll~~--g~~~~k~~A~~lL~~L~~ 639 (643)
+. ++++.|+.++.+ .++.++..+..++.+|..
T Consensus 694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 76 899999999999 899999999999999975
No 31
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=1.7e-22 Score=199.30 Aligned_cols=193 Identities=20% Similarity=0.320 Sum_probs=173.7
Q ss_pred CcHHHHHhCCCCCh--HHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchh
Q 040749 405 AIPPLVQLLPYPDS--KILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKI 480 (643)
Q Consensus 405 ~i~~Lv~lL~~~d~--~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~ 480 (643)
.+|.|+++|.++++ .+|..|+++|.+|+. +++++..|.+.|+||+|+++|+++++++++.|+++|.+|+. ++++|.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 68999999999988 899999999999996 67889999999999999999999999999999999999997 578999
Q ss_pred hhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc----------------CChhh
Q 040749 481 TIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE----------------RNLGM 543 (643)
Q Consensus 481 ~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~----------------~~~~~ 543 (643)
.|++.|+||+|+.+|+ +++..+++.|+.+|+||+..++++..+++. ++++|+.++.. .+..+
T Consensus 89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence 9999999999999998 478999999999999999999999998875 69999987631 25588
Q ss_pred HHHHHHHHHHHhC-ChhhHHHhhcC-CcHHHHHHHHhcC------ChHHHHHHHHHHHHHhcC
Q 040749 544 VDEALSILLLLAT-HPEGRHKIGQL-SFIETLVEYIREG------TPKNKECATAVLLELGAN 598 (643)
Q Consensus 544 ~~~Al~~L~~La~-~~~~~~~i~~~-g~i~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~ 598 (643)
+.+|.++|.||+. ++++|+.+.+. |+|+.|+.+++.+ +...+|+|+.+|.+||.+
T Consensus 168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 9999999999987 67999999885 6789999999852 567899999999999864
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=2e-21 Score=226.57 Aligned_cols=276 Identities=23% Similarity=0.287 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH
Q 040749 361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k 438 (643)
.+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ +..+
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~ 269 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK 269 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 47899999999854 89999999999999985 477899999999999999999999999999999999999986 4567
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchhhhhccCChHHHHHHhccCCh-hhHHHHHHHHHHhccC
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTALFNLSLN 516 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~ 516 (643)
..+.+.|+++.|+.+|.+++.+++..++.+|.+|+. +++++..+.+.|+++.|+.+|++++. ..+..++.+|.+|+.+
T Consensus 270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence 777789999999999999999999999999999986 46788888999999999999998764 4556789999999999
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
+.++..+++.|+++.|+.++.+.+..++..|+++|.+|+..... .....++++.|+.++.+.++.+++.|+++|.+|+
T Consensus 350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999975432 1223578999999999999999999999999999
Q ss_pred cCCHHHHHHHHHCCcHHHHHHHhhc-CC-HHHHHHHHHHHHHHHh
Q 040749 597 ANNSSFILAALQYGVYEHLIQLTEG-GT-SRAQRKANALLQLISK 639 (643)
Q Consensus 597 ~~~~~~~~~~~~~g~i~~L~~ll~~-g~-~~~k~~A~~lL~~L~~ 639 (643)
.+++..+..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 9988888889999999999999986 43 4899999999999874
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=1.3e-21 Score=190.69 Aligned_cols=197 Identities=27% Similarity=0.364 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKR 439 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~ 439 (643)
.+..+.|+.+|.+.+++++..|++.|.+++..+++++..+.+.|++|.|+.+|+++++.++..|+++|.|++. +++++.
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 4668899999999999999999999999998899999999999999999999999999999999999999996 567788
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-C
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-Q 517 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~ 517 (643)
.+++.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|+.+|++++..++..|+++|.||+.. +
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 8999999999999999999999999999999999654 5556777899999999999999999999999999999987 6
Q ss_pred cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749 518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 518 ~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 557 (643)
+++..+++.|+++.|++++.++++.+++.|+.+|.+|+++
T Consensus 171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 6677788999999999999999999999999999999863
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.87 E-value=1.4e-21 Score=227.95 Aligned_cols=276 Identities=18% Similarity=0.198 Sum_probs=244.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNK 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k 438 (643)
.+.++.|+.+|.+.++.+|..|+..|.+++.. ..++..+.. .|+++.|+.+|.++ ++.++..|+.+|.+|+.+++++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~ 227 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL 227 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence 57899999999999999999999999999964 567777775 48999999999755 8999999999999999998899
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-C
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-N 516 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~ 516 (643)
..+.+.|+|+.|+.+|+++++.++..|+++|.+|+... ..+..+.+.|+++.|+.+|.+++..++..|+.+|.+|+. +
T Consensus 228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~ 307 (780)
T 2z6g_A 228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN 307 (780)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999774 556667779999999999999899999999999999996 5
Q ss_pred CcchHHHHHcCChHHHHHHhccCC-hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 517 QANKARAIDAGIVLPLMNLLEERN-LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~-~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
++++..+++.|+++.|+.++.+.+ ....+.++.+|.+|+.+++.+..+++.|+++.|+.++.++++..+..|+++|.+|
T Consensus 308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387 (780)
T ss_dssp HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence 678888999999999999998744 4556788999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 596 GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 596 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+...+.. ....++++.|+.++.+.++.+++.|.++|.+|...
T Consensus 388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429 (780)
T ss_dssp HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 9765431 11246899999999999999999999999998753
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=6.4e-21 Score=185.84 Aligned_cols=198 Identities=21% Similarity=0.234 Sum_probs=181.4
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcch
Q 040749 443 QQGAIPAIIEILQSGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANK 520 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~ 520 (643)
..|+.+.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+|+++++.++..|+++|.||+. +++++
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 5688999999999999999999999999999 456778888899999999999999999999999999999996 55677
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
..+++.|+++.|+.+|.++++.++..|+++|.||+. +++.+..+.+.|+++.|++++.++++.++..|+++|.+++..+
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 889999999999999999999999999999999996 5667788889999999999999999999999999999999988
Q ss_pred HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+.....+.+.|+++.|+.++.++++.+++.|..+|.+|.++
T Consensus 170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 88888999999999999999999999999999999998753
No 36
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.83 E-value=9.2e-21 Score=177.18 Aligned_cols=76 Identities=29% Similarity=0.502 Sum_probs=71.8
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK 344 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 344 (643)
..+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.+++..+++||..|+++|+.|+..||+.
T Consensus 101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~ 176 (179)
T 2f42_A 101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV 176 (179)
T ss_dssp CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence 4689999999999999999999999999999999999975558999999999999999999999999999999876
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4.2e-19 Score=199.82 Aligned_cols=323 Identities=14% Similarity=0.109 Sum_probs=249.2
Q ss_pred cCCCCccchHHHHH----HHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhccccCCCCCCCCcchhchhhHHHHH
Q 040749 290 IASGQTFERESVQK----WFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIV 365 (643)
Q Consensus 290 ~~cg~ty~r~~I~~----~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~p~~~~~~~~~~s~~~~~~i~ 365 (643)
.+|.+.-||..|.+ |+...- .. .-+.++++-.++.-|..... .. . .-...++
T Consensus 282 aACi~~~cR~~I~~~~~~~L~~~l----------~~-~~ir~lAavvL~KL~~~~~~----~~-------~--si~~La~ 337 (778)
T 3opb_A 282 SACIDETMRTYITENYLQLLERSL----------NV-EDVQIYSALVLVKTWSFTKL----TC-------I--NLKQLSE 337 (778)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHT----------TS-GGGHHHHHHHHHHHTGGGTC----TT-------C--CHHHHHH
T ss_pred HHhCCcHHHHHHHHhHHHHHHHHh----------cc-HHHHHHHHHHHHHHhcCCCC----Cc-------C--cHHHHHH
Confidence 36888888887766 443221 11 12334455555555553321 00 0 1134678
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcc-------
Q 040749 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDES------- 436 (643)
Q Consensus 366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~------- 436 (643)
.+.+.|.+++.+.+..|++.|..++ -+++.|..+++ .|+++.|+.+++. ++..+...++.+|.|++.+.+
T Consensus 338 ~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~ 416 (778)
T 3opb_A 338 IFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX 416 (778)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence 8889999888788999999999999 46788888877 5679999999995 788899999999999976322
Q ss_pred --------------------------------hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc
Q 040749 437 --------------------------------NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL 484 (643)
Q Consensus 437 --------------------------------~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~ 484 (643)
++..+.+.|+++.|+.+++++++.+++.|+++|.+||.++++|..+++
T Consensus 417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq 496 (778)
T 3opb_A 417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ 496 (778)
T ss_dssp ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344556899999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHhccCChh---hHHHHHHHHHHhccCCcchHHHH--H-cCChHHHHHHhcc-CChh------------h-H
Q 040749 485 SDGIPPLVDLLQNGTIR---GKKDAVTALFNLSLNQANKARAI--D-AGIVLPLMNLLEE-RNLG------------M-V 544 (643)
Q Consensus 485 ~g~i~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~lv--~-~G~v~~Lv~lL~~-~~~~------------~-~ 544 (643)
.|++++|+.++.+++.. ++..|+.||.+|+...+....+- . .|+|++|+.+|.. +... + .
T Consensus 497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~ 576 (778)
T 3opb_A 497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN 576 (778)
T ss_dssp TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence 99999999999988654 89999999999986555443221 1 3899999999973 2111 2 6
Q ss_pred HHHHHHHHHHhCCh-----hhHHHhhcC-CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH-HHHHHC------Cc
Q 040749 545 DEALSILLLLATHP-----EGRHKIGQL-SFIETLVEYIREGTPKNKECATAVLLELGANNSSFI-LAALQY------GV 611 (643)
Q Consensus 545 ~~Al~~L~~La~~~-----~~~~~i~~~-g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~-~~~~~~------g~ 611 (643)
-+|+.+|.|||+.+ +.|..++.. |+++.|..+|.+.++.++..|++++++|+.+. +.. +.+.+. +.
T Consensus 577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~r 655 (778)
T 3opb_A 577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRN 655 (778)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHH
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhcc
Confidence 68999999999976 457888885 99999999999999999999999999999743 332 233221 23
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 612 YEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 612 i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
++.|+.++..++.++|+.|.++|.++.
T Consensus 656 L~lLV~Ll~s~D~~~r~AAagALAnLt 682 (778)
T 3opb_A 656 FNILVKLLQLSDVESQRAVAAIFANIA 682 (778)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 889999999999999999999999984
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.80 E-value=2.2e-18 Score=176.95 Aligned_cols=236 Identities=18% Similarity=0.187 Sum_probs=188.7
Q ss_pred HHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHH-hCCCCChHHHHHHHHH
Q 040749 361 KEEIVSLVEQLSSS------------KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQ-LLPYPDSKILEHAVTA 427 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~------------~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~d~~~~~~a~~~ 427 (643)
...++..++.|.++ +.+.+..|+..|..++ ++.++...+...|++|.|+. +|.++++.+++.|+++
T Consensus 27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv-~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~ 105 (296)
T 1xqr_A 27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL 105 (296)
T ss_dssp HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHH-hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455666666553 2356788999999999 56778999999999999999 9999999999999999
Q ss_pred HHHhcCC-cchHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHH
Q 040749 428 VLNLSID-ESNKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKK 504 (643)
Q Consensus 428 L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~ 504 (643)
|+|++.+ +..+..+++.|++++|+.+|+++ +..++..|+++|.+|+... .....+...|+++.|+.+|++++..++.
T Consensus 106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~ 185 (296)
T 1xqr_A 106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV 185 (296)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence 9999985 45688888999999999999964 7899999999999998654 4566777889999999999999999999
Q ss_pred HHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcC-CcHHHH----HHHH
Q 040749 505 DAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQL-SFIETL----VEYI 577 (643)
Q Consensus 505 ~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~-g~i~~L----v~lL 577 (643)
.|+++|.||+.. ++.+..+++.|+++.|+.+|.+++..+++.|+.+|.+|+.. +.....+... ..+..+ .+-+
T Consensus 186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l 265 (296)
T 1xqr_A 186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL 265 (296)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence 999999999874 56678899999999999999999999999999999999886 3333333221 112222 2333
Q ss_pred hcC--ChHHHHHHHHHHHHHhc
Q 040749 578 REG--TPKNKECATAVLLELGA 597 (643)
Q Consensus 578 ~~~--s~~~~e~A~~~L~~L~~ 597 (643)
+.. .....+.|..++..+..
T Consensus 266 q~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 266 QQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp TTCGGGHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHHHHHHcC
Confidence 322 24566777777766653
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=4.2e-20 Score=152.91 Aligned_cols=75 Identities=28% Similarity=0.409 Sum_probs=69.9
Q ss_pred CCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhccc
Q 040749 268 SLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNF 343 (643)
Q Consensus 268 ~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 343 (643)
...+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||.|+++++...++||..|+++|+.|+.+++.
T Consensus 8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~ 82 (85)
T 2kr4_A 8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS 82 (85)
T ss_dssp CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence 3568999999999999999999999999999999999996 56899999999999999999999999999988753
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.79 E-value=5.8e-20 Score=156.59 Aligned_cols=75 Identities=29% Similarity=0.414 Sum_probs=70.2
Q ss_pred CCCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749 267 LSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN 342 (643)
Q Consensus 267 ~~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~ 342 (643)
....+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||.|+++++..+++||..|+++|+.|+.+|+
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 34578999999999999999999999999999999999985 6799999999999999999999999999999876
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.79 E-value=2.1e-18 Score=177.13 Aligned_cols=221 Identities=17% Similarity=0.130 Sum_probs=186.6
Q ss_pred hHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH-HhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHh
Q 040749 418 SKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIE-ILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLL 495 (643)
Q Consensus 418 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL 495 (643)
.+.+..|+..|.+++.+.++...+...|++++|+. +|.+++++++..|+++|.+++.+ +.++..+.+.|++|+|+.+|
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 45678899999999998889998999999999999 99999999999999999999865 56788888999999999999
Q ss_pred ccC-ChhhHHHHHHHHHHhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHH
Q 040749 496 QNG-TIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIET 572 (643)
Q Consensus 496 ~~~-~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~ 572 (643)
+++ +..+++.|++||.||+.+.. ....++++|+++.|+.+|.+++..++..|+++|.+|+. +++.+..+++.|+++.
T Consensus 134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~ 213 (296)
T 1xqr_A 134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213 (296)
T ss_dssp HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence 864 78999999999999997554 45678889999999999999999999999999999987 5788999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHHH---HHHhh-cC-CHHHHHHHHHHHHHHH
Q 040749 573 LVEYIREGTPKNKECATAVLLELGANNSSFILAALQY--GVYEHL---IQLTE-GG-TSRAQRKANALLQLIS 638 (643)
Q Consensus 573 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~--g~i~~L---~~ll~-~g-~~~~k~~A~~lL~~L~ 638 (643)
|+.+|.+.++.+++.|+.+|.+|+...+......... .....| .+-++ +. +....++|..++..+.
T Consensus 214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999998866554443321 222222 22333 22 4678889999988664
No 42
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.79 E-value=9.6e-20 Score=154.63 Aligned_cols=76 Identities=32% Similarity=0.451 Sum_probs=71.4
Q ss_pred CCCCCCccccccCcccccCceecCCC-CccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749 268 SLVIPHEFLCPITLEIMRDPVIIASG-QTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK 344 (643)
Q Consensus 268 ~~~~~~~f~CpIc~~~m~dPv~~~cg-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 344 (643)
...+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||.|++++...+++||..|+.+|+.|+..+++.
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~ 92 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ 92 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence 45689999999999999999999999 99999999999986 568999999999999999999999999999998866
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.74 E-value=1.3e-18 Score=141.89 Aligned_cols=76 Identities=54% Similarity=1.112 Sum_probs=71.5
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK 344 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 344 (643)
..++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++....+.||..++++|+.|..+++++
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 78 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 78 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence 3678999999999999999999999999999999999987789999999999999999999999999999998863
No 44
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.73 E-value=1.7e-17 Score=169.77 Aligned_cols=77 Identities=29% Similarity=0.497 Sum_probs=72.6
Q ss_pred CCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749 268 SLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK 344 (643)
Q Consensus 268 ~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~ 344 (643)
...+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.+++...++||..|+.+|+.|+.++++.
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 278 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV 278 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence 35789999999999999999999999999999999999987767999999999999999999999999999999876
No 45
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-17 Score=138.26 Aligned_cols=72 Identities=28% Similarity=0.504 Sum_probs=64.6
Q ss_pred CCCccccccCcccccCceecC-CCCccchHHHHHHHhcC-----CCCCCC--cCcc-cccCCCCccHHHHHHHHHHHHhc
Q 040749 271 IPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSN-----HRTCPK--TRQT-LAHLSIAPNYALKNLILQWCEKN 341 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~-----~~~cP~--~~~~-l~~~~l~pn~~l~~~i~~~~~~~ 341 (643)
.+++|.||||+++|.|||+++ |||+||+.||.+||..+ ..+||. |+.. +...+++||..|+.+|+.|...+
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~ 83 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR 83 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence 478899999999999999996 99999999999999863 468999 5554 88899999999999999999876
Q ss_pred c
Q 040749 342 N 342 (643)
Q Consensus 342 ~ 342 (643)
+
T Consensus 84 ~ 84 (94)
T 2yu4_A 84 H 84 (94)
T ss_dssp C
T ss_pred c
Confidence 6
No 46
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.57 E-value=2.8e-15 Score=170.39 Aligned_cols=102 Identities=25% Similarity=0.395 Sum_probs=81.9
Q ss_pred hhhHHHHHHHHHHHHHhhhhhcccCCCCCCchhhcccCCCCCCCCccccccCcccccCceecCCC-CccchHHHHHHHhc
Q 040749 229 SESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASG-QTFERESVQKWFDS 307 (643)
Q Consensus 229 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~CpIc~~~m~dPv~~~cg-~ty~r~~I~~~~~~ 307 (643)
.+.++++..+..++++.....+.+ +....++|++|.|||++++|+|||++|+| +||+|.+|++|+..
T Consensus 858 ~~~i~~~~~l~~~~~~~~~~~~~~------------e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~ 925 (968)
T 3m62_A 858 PEFIEKLLNFANKAEEQRKADEEE------------DLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS 925 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh------------hccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc
Confidence 445566666666665443222111 11234789999999999999999999998 79999999999987
Q ss_pred CCCCCCCcCcccccCCCCccHHHHHHHHHHHHhccc
Q 040749 308 NHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNF 343 (643)
Q Consensus 308 ~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~ 343 (643)
+.+||.|++++++.+++||++||..|++||.+++.
T Consensus 926 -~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 926 -DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp -CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 56999999999999999999999999999998764
No 47
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.56 E-value=5.9e-15 Score=124.21 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=68.2
Q ss_pred CCCCCccccccCcccccCceecC-CCCccchHHHHHHHhc-CCCCCCCcCccc-ccCCCCccHHHHHHHHHHHHhcccc
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDS-NHRTCPKTRQTL-AHLSIAPNYALKNLILQWCEKNNFK 344 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~-~~~~cP~~~~~l-~~~~l~pn~~l~~~i~~~~~~~~~~ 344 (643)
..++++|.||||+++|.+||+++ |||+||+.||.+|+.. +..+||.|+.++ ....+.+|..++.+++.|...++..
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~ 86 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT 86 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence 46789999999999999999999 9999999999999975 447899999997 5668999999999999999877654
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.54 E-value=3.2e-13 Score=148.50 Aligned_cols=276 Identities=19% Similarity=0.251 Sum_probs=221.3
Q ss_pred hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc
Q 040749 360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~ 436 (643)
..++|+.|+..|.+ .-.+.|+.|+..|+.+++..+ ..+ ..++++.|+..|+.+ |.++...++.+|.++...++
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~---~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR---LEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT---THH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH---HHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 45789999999985 568899999999999996543 333 366899999999865 88899999999998755221
Q ss_pred h------------------HHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--chhhhhc-cCChHHHHHH
Q 040749 437 N------------------KRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--NKITIGL-SDGIPPLVDL 494 (643)
Q Consensus 437 ~------------------k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~-~g~i~~Lv~l 494 (643)
. .+.+. +.+.|+.|+.+|++.+..+|.++..+|..|+.... ++..|.. +++|+.|+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 11232 57889999999999999999999999999986643 6777775 7999999999
Q ss_pred hccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccC----ChhhHHHHHHHHHHHhC-ChhhHHHhhcCC
Q 040749 495 LQNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEER----NLGMVDEALSILLLLAT-HPEGRHKIGQLS 568 (643)
Q Consensus 495 L~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~-~~~~~~~i~~~g 568 (643)
|.+....++-.|+..|.+|+.+..+..+++. .|+++.|+.++... ...++..|+.+|.||.. ++.++..|.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9999999999999999999999998888877 69999999999873 33678999999999988 567899999999
Q ss_pred cHHHHHHHHhcCCh------HHHH---HHHHHHHHHhcCC------HHHHHHHHHCCcHHHHHHHhhcC--CHHHHHHHH
Q 040749 569 FIETLVEYIREGTP------KNKE---CATAVLLELGANN------SSFILAALQYGVYEHLIQLTEGG--TSRAQRKAN 631 (643)
Q Consensus 569 ~i~~Lv~lL~~~s~------~~~e---~A~~~L~~L~~~~------~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~ 631 (643)
+++.|..++..+.. .... .++.++..|+..+ +.+...+.+.|+++.|++++... ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999875432 1222 3666777777652 24566778999999999998865 567888888
Q ss_pred HHHHHHHh
Q 040749 632 ALLQLISK 639 (643)
Q Consensus 632 ~lL~~L~~ 639 (643)
.++..+.+
T Consensus 335 ~tla~~ir 342 (651)
T 3grl_A 335 NTVSEVIR 342 (651)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 87776654
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.48 E-value=2.1e-13 Score=133.20 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=64.3
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhc-CCCCCCC--cCcccccCCCCccHHHHHHHHHHHHh
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDS-NHRTCPK--TRQTLAHLSIAPNYALKNLILQWCEK 340 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~-~~~~cP~--~~~~l~~~~l~pn~~l~~~i~~~~~~ 340 (643)
....+|.||||+++|+|||+. .|||+|||.||.+||.. +..+||. |++.+...++.||..|+.+|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 457789999999999999985 99999999999999986 4568999 99999999999999999999998764
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.45 E-value=3.2e-14 Score=126.72 Aligned_cols=70 Identities=17% Similarity=0.363 Sum_probs=64.0
Q ss_pred CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc-CCCCccHHHHHHHHHHHHh
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH-LSIAPNYALKNLILQWCEK 340 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~~ 340 (643)
+++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++.. ..+.+|..++.+++.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 456799999999999999999999999999999999766799999999987 7899999999999998754
No 51
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.45 E-value=2e-14 Score=110.23 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=49.7
Q ss_pred ccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccH
Q 040749 274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 328 (643)
.|.||||+++|.|||++ +|||+|||.||++|+..+ .+||.|++++...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 58999999999999999 899999999999999874 4799999999999999985
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=1e-13 Score=127.29 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=64.3
Q ss_pred CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC-CCCccHHHHHHHHHHHHh
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL-SIAPNYALKNLILQWCEK 340 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~~~ 340 (643)
+++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++... .+.+|..++.+++.|...
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 4667999999999999999999999999999999998777899999999987 899999999999988743
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.35 E-value=9.2e-11 Score=129.06 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=214.3
Q ss_pred hHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCch-----------------hHHH-HHhcCCcHHHHHhCCCCChH
Q 040749 360 QKEEIVSLVEQLSS--SKLEVQKEAVRKIRLLSKENPE-----------------NRIL-IADCGAIPPLVQLLPYPDSK 419 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~-----------------~r~~-i~~~g~i~~Lv~lL~~~d~~ 419 (643)
...+++.|+..|+. .|.+....++..|.++...+++ +.+. +.+.+.|+.|+.+|.+.|..
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~ 137 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH 137 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence 35679999999986 4778888899999877654432 1122 34568999999999999999
Q ss_pred HHHHHHHHHHHhcCCc-c-hHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHh
Q 040749 420 ILEHAVTAVLNLSIDE-S-NKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLL 495 (643)
Q Consensus 420 ~~~~a~~~L~nLs~~~-~-~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL 495 (643)
++..++..|..|+.+. + +++.|. ..++|+.|+.+|.+....+|..++.+|.+|+.......+++. .|+++.|++++
T Consensus 138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii 217 (651)
T 3grl_A 138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII 217 (651)
T ss_dssp HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence 9999999999998743 3 578888 569999999999998999999999999999987766555555 79999999999
Q ss_pred ccCC----hhhHHHHHHHHHHhccCC-cchHHHHHcCChHHHHHHhccCChh------hHHH---HHHHHHHHhCC----
Q 040749 496 QNGT----IRGKKDAVTALFNLSLNQ-ANKARAIDAGIVLPLMNLLEERNLG------MVDE---ALSILLLLATH---- 557 (643)
Q Consensus 496 ~~~~----~~~~~~A~~aL~nLs~~~-~n~~~lv~~G~v~~Lv~lL~~~~~~------~~~~---Al~~L~~La~~---- 557 (643)
+... ..+..+++.+|.||..+. .|+..+.+.|+++.|..+|..+++. ...+ ++.++..|+..
T Consensus 218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~ 297 (651)
T 3grl_A 218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP 297 (651)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7633 256789999999998754 4888899999999999999753221 2223 66677777553
Q ss_pred ---hhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHHHHHHHCC---------cHHHHHHHhhcC-
Q 040749 558 ---PEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLELGANNSSFILAALQYG---------VYEHLIQLTEGG- 622 (643)
Q Consensus 558 ---~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g---------~i~~L~~ll~~g- 622 (643)
..++.++.+.|++..|++++... ...++..|+.++..+.++++.....+.+.. ++..|+.++.+.
T Consensus 298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~ 377 (651)
T 3grl_A 298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ 377 (651)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence 34678899999999999999864 467899999999999999988777765432 233344444433
Q ss_pred CHHHHHHHHHHHHHHH
Q 040749 623 TSRAQRKANALLQLIS 638 (643)
Q Consensus 623 ~~~~k~~A~~lL~~L~ 638 (643)
....|-.|..+++..-
T Consensus 378 ~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 378 PFVLRCAVLYCFQCFL 393 (651)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 5677878887777543
No 54
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=114.03 Aligned_cols=70 Identities=19% Similarity=0.316 Sum_probs=63.8
Q ss_pred CCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhc
Q 040749 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKN 341 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~ 341 (643)
+++++.||||++.|.+|+++ +|||+||+.||.+|+..+ .+||.|+.++....+.+|..++.+++.|....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~ 89 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR 89 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence 46679999999999999998 899999999999999864 68999999999889999999999999997654
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.32 E-value=6.1e-11 Score=115.10 Aligned_cols=190 Identities=18% Similarity=0.200 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
+...++.|++.|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------- 78 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 78 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 35679999999999999999999999998752 357899999999999999999999998875
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
..++++.|+..|.++++.++..|+.+|..+. ..++++.|+.++.++++.++..|+.+|.++..
T Consensus 79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 141 (211)
T 3ltm_A 79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 141 (211)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence 3467899999999999999999999998874 34688999999999999999999999998852
Q ss_pred hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
..+++.|..++.++++.++..|+.+|..+.. ..+++.|..++.+.++.+|..|..+|..+....
T Consensus 142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 3478899999998999999999999999843 356888999999999999999999999887654
Q ss_pred H
Q 040749 600 S 600 (643)
Q Consensus 600 ~ 600 (643)
+
T Consensus 206 ~ 206 (211)
T 3ltm_A 206 H 206 (211)
T ss_dssp -
T ss_pred C
Confidence 4
No 56
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.31 E-value=7.6e-13 Score=112.93 Aligned_cols=70 Identities=19% Similarity=0.326 Sum_probs=62.2
Q ss_pred CCCCccccccCcccccCcee-cCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVI-IASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE 339 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~-~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 339 (643)
.+.+++.||||++.|.+||+ ++|||+||+.||.+|+.....+||.|+.++....+.+|..+..+++..-.
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~ 88 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT 88 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence 35677999999999999999 99999999999999999865789999999999999999888887766544
No 57
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.30 E-value=1.2e-12 Score=113.52 Aligned_cols=69 Identities=12% Similarity=0.356 Sum_probs=61.4
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC----CCCccHHHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL----SIAPNYALKNLILQWCE 339 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~~~~~ 339 (643)
.+++++.||||++.|.+||++ +|||+||+.||.+|+..+ .+||.|+..+... .+.+|..+..+++.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 356789999999999999998 999999999999999875 6899999998875 67899999999987754
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.29 E-value=6.7e-11 Score=120.13 Aligned_cols=198 Identities=11% Similarity=0.008 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
...++.|+..|.++++.++..|++.|..+. + .++++.|+.+|.++++.++..|+.+|.++...+.....
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~ 90 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN 90 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence 356888999999989999999999988876 1 23678888889888889999999999888743322111
Q ss_pred HHhcCChHHHHH-HhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 441 IAQQGAIPAIIE-ILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 441 i~~~g~i~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
.++.+.. ++.+.++.++..++++|..+...+. .....+++.|+.++.+.++.++..|+.+|.++..
T Consensus 91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 2233332 3456678888888888888753211 0123456777777777777888888887776642
Q ss_pred hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
.++++.|+.++.++++.++..|+.+|..+.... ..+++.|+.++.+.++.+|..|+.+|..+.
T Consensus 158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 246777888887777777777887777764221 235667777777777777777777777664
No 59
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.29 E-value=1.2e-10 Score=111.98 Aligned_cols=186 Identities=18% Similarity=0.202 Sum_probs=162.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
..+..+.+++.|.++++.++..|+..|..+.. .+.++.|+.+|.++++.++..|+.+|..+.
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~------- 73 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG------- 73 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence 45789999999999999999999999998762 247899999999999999999999998875
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
...+++.|+..|.+.++.++..|+++|..+. ...+++.|+.++.+.++.++..|+.+|.++..
T Consensus 74 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 136 (201)
T 3ltj_A 74 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD---- 136 (201)
T ss_dssp ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence 2467899999999999999999999998874 34688999999999999999999999998852
Q ss_pred hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
.++++.|..++.++++.++..|+.+|..+.. ..+++.|..++.+.++.++..|..+|..+-
T Consensus 137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998832 247888999999999999999999998764
No 60
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.29 E-value=2.2e-12 Score=116.99 Aligned_cols=65 Identities=20% Similarity=0.410 Sum_probs=52.7
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHH
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE 339 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~ 339 (643)
.+++.||||++.|.+||+++|||+||+.||.+|+... .+||.|+.++... .+|..+...+..+..
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMVN 115 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHHT
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHHH
Confidence 3568999999999999999999999999999999864 5899999988653 245555556655543
No 61
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=6.8e-13 Score=116.42 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=62.2
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc-------CCCCccHHHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH-------LSIAPNYALKNLILQWCE 339 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~-------~~l~pn~~l~~~i~~~~~ 339 (643)
...+++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+..+.. ..+.+|..+..++..|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 4567899999999999999999999999999999998877899999999874 567789999999988753
No 62
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.28 E-value=1.5e-12 Score=114.73 Aligned_cols=69 Identities=23% Similarity=0.415 Sum_probs=63.1
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW 337 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 337 (643)
..+++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++..|..+
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l 81 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence 367889999999999999999999999999999999997666899999999998899999998888764
No 63
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.28 E-value=6.6e-13 Score=109.65 Aligned_cols=64 Identities=30% Similarity=0.587 Sum_probs=56.9
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcC-----CCCCCCcCcccccCCCCccHHHHH
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN-----HRTCPKTRQTLAHLSIAPNYALKN 332 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~~l~pn~~l~~ 332 (643)
..+.+++.||||++.+.+|++++|||+||+.||.+|+... ...||.|+.++....+.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN 82 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence 4577899999999999999999999999999999999972 668999999999888888876544
No 64
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3e-12 Score=100.33 Aligned_cols=56 Identities=11% Similarity=0.310 Sum_probs=50.0
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 324 (643)
..+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+.++...++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 35678899999999999999999999999999999997666789999999876553
No 65
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.28 E-value=1.2e-13 Score=112.64 Aligned_cols=64 Identities=22% Similarity=0.434 Sum_probs=56.4
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcC------CCCCCCcCcccccCCCCccHHHHH
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN------HRTCPKTRQTLAHLSIAPNYALKN 332 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~------~~~cP~~~~~l~~~~l~pn~~l~~ 332 (643)
..+.+++.||||++.+.+|++++|||+||+.||.+|+... ..+||.|+.++...++.+|+.+++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 3567899999999999999999999999999999999863 568999999999888888876543
No 66
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.28 E-value=3.9e-12 Score=102.12 Aligned_cols=59 Identities=29% Similarity=0.498 Sum_probs=49.5
Q ss_pred CCCCCccccccCcccccCceecC-CCCccchHHHHHHHhcC-CCCCCCcCccccc-CCCCcc
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSN-HRTCPKTRQTLAH-LSIAPN 327 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~-~~l~pn 327 (643)
..+++++.||||++.|.+||+++ |||+||+.||.+|+... ..+||.|+.++.. ..+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 46788999999999999999999 99999999999999853 3689999997543 334444
No 67
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.27 E-value=1.4e-10 Score=112.50 Aligned_cols=187 Identities=19% Similarity=0.175 Sum_probs=160.7
Q ss_pred cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749 403 CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482 (643)
Q Consensus 403 ~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 482 (643)
.+.++.|+.+|.++++.++..|+..|..+.. .++++.|+.+|.++++.++..|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------- 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------- 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence 4578999999999999999999999987652 468999999999999999999999998874
Q ss_pred hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 040749 483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRH 562 (643)
Q Consensus 483 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~ 562 (643)
..++++.|+.+|.+.++.++..|+.+|.++.. .++++.|+.++.++++.++..|+.+|..+..
T Consensus 79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 141 (211)
T 3ltm_A 79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------ 141 (211)
T ss_dssp -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence 35688999999999999999999999998853 3578999999999999999999999998843
Q ss_pred HhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 563 KIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 563 ~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
...++.|..++.+.++.++..|+.+|..+.. ..+++.|..++.++++.+|..|...|..+...
T Consensus 142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 3578899999998999999999999999853 24688899999999999999999999887653
No 68
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.26 E-value=1.2e-12 Score=115.19 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=61.5
Q ss_pred CCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHh
Q 040749 271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEK 340 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~ 340 (643)
+.+++.||||+++|.+||++ +|||+||+.||.+|+. ..||.|+.++....+.+|..++.+++.|...
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~ 86 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL 86 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence 45679999999999999999 9999999999999997 5799999999988999999999999887654
No 69
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=3.1e-12 Score=104.63 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=53.1
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNL 333 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~ 333 (643)
...+++.||||++.+.+||+++|||+||+.||.+|+.. ..+||.|+.++. ..+.+|..+...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~ 72 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAK 72 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHH
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHH
Confidence 45678999999999999999999999999999999986 458999999997 567788555433
No 70
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.26 E-value=2.1e-12 Score=120.92 Aligned_cols=70 Identities=21% Similarity=0.490 Sum_probs=62.3
Q ss_pred CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccc-cCCCCccHHHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLA-HLSIAPNYALKNLILQWCE 339 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~-~~~l~pn~~l~~~i~~~~~ 339 (643)
.+.+++.||||++.|.+||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.||..+..+|..|..
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 456789999999999999998 999999999999999987789999999985 4568899999999998854
No 71
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=9.2e-13 Score=108.77 Aligned_cols=64 Identities=25% Similarity=0.533 Sum_probs=56.8
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhc-----CCCCCCCcCcccccCCCCccHHHHH
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS-----NHRTCPKTRQTLAHLSIAPNYALKN 332 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~pn~~l~~ 332 (643)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +...||.|+..+...++.+|+.++.
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 457888999999999999999999999999999999986 3568999999999988888876543
No 72
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=8.6e-12 Score=99.51 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=52.0
Q ss_pred CCCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 269 LVIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
..+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ..+||.|+.++...++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 4578899999999999999997 99999999999999987 4689999999998877665
No 73
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.22 E-value=2.8e-10 Score=109.43 Aligned_cols=185 Identities=19% Similarity=0.193 Sum_probs=160.1
Q ss_pred CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh
Q 040749 404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG 483 (643)
Q Consensus 404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 483 (643)
+..+.++++|.++++.++..|+.+|..+.. .++++.|+..|.++++.++..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~---------- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------- 73 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence 467889999999999999999999987652 467899999999999999999999998763
Q ss_pred ccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 040749 484 LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHK 563 (643)
Q Consensus 484 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~ 563 (643)
..++++.|+.+|.+.++.++..|+.+|.++.. ..+++.|+.++.++++.++..|+.+|..+..
T Consensus 74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 136 (201)
T 3ltj_A 74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------- 136 (201)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence 34689999999999999999999999998753 3478899999999999999999999998853
Q ss_pred hhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 564 IGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 564 i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
...++.|..++.+.++.++..|+.+|..+.. + .+++.|..++.+.++.+|..|...|..+..
T Consensus 137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS 198 (201)
T ss_dssp ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999832 2 368889999999999999999999988754
No 74
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.8e-11 Score=97.93 Aligned_cols=56 Identities=25% Similarity=0.540 Sum_probs=49.4
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHh--cCCCCCCCcCcccccCCC
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFD--SNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~--~~~~~cP~~~~~l~~~~l 324 (643)
..+.+++.||||++.+.+|++++|||+||+.||.+|+. .+..+||.|++++...++
T Consensus 15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 45788999999999999999999999999999999997 356689999999876543
No 75
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.19 E-value=5.9e-12 Score=109.79 Aligned_cols=67 Identities=19% Similarity=0.434 Sum_probs=57.1
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcC--CCCCCCcCcccccCCCCccHHHHHHHHHHH
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN--HRTCPKTRQTLAHLSIAPNYALKNLILQWC 338 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~ 338 (643)
.+.+.||||++.+.+|++++|||+||+.||.+|+... ..+||.|+.++....+.+|..+..+++.+.
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~ 87 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL 87 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence 4468899999999999999999999999999999853 358999999999988888876666665543
No 76
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.5e-11 Score=93.23 Aligned_cols=47 Identities=28% Similarity=0.596 Sum_probs=42.5
Q ss_pred CCCCCccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCc
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKT 315 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~ 315 (643)
..+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|
T Consensus 15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 357889999999999999999999999999999999985 45689987
No 77
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.16 E-value=1.9e-11 Score=95.37 Aligned_cols=55 Identities=20% Similarity=0.364 Sum_probs=49.3
Q ss_pred CccccccCcc-cccCc----eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 273 HEFLCPITLE-IMRDP----VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 273 ~~f~CpIc~~-~m~dP----v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
+++.||||++ .+.+| ++++|||+||+.||.+|+..+..+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5789999999 99999 5789999999999999998777789999999998887765
No 78
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.14 E-value=1.5e-11 Score=108.03 Aligned_cols=67 Identities=19% Similarity=0.314 Sum_probs=56.8
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC-ccHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA-PNYALKNLILQ 336 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-pn~~l~~~i~~ 336 (643)
.+++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++...++. ++..+..++..
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~ 86 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS 86 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence 35667999999999999999999999999999999998667899999999887765 45566666544
No 79
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.14 E-value=1.1e-11 Score=112.43 Aligned_cols=67 Identities=15% Similarity=0.291 Sum_probs=57.1
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc---------cCCCCccHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA---------HLSIAPNYALKNLILQ 336 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~---------~~~l~pn~~l~~~i~~ 336 (643)
.++++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|+.++. ...+.|+..++..|..
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 578899999999999999999999999999999999977778999998653 3345688887777653
No 80
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.13 E-value=2.1e-11 Score=114.67 Aligned_cols=68 Identities=24% Similarity=0.432 Sum_probs=62.3
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW 337 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~ 337 (643)
.++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.||..++..|..+
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 67899999999999999999999999999999999987666899999999999899999888887653
No 81
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.11 E-value=2.3e-09 Score=108.74 Aligned_cols=200 Identities=12% Similarity=0.042 Sum_probs=155.6
Q ss_pred HhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchh
Q 040749 401 ADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI 480 (643)
Q Consensus 401 ~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~ 480 (643)
...+.++.|+..|.++++.++..|+.+|.++. ..++++.|+.+|.++++.++..|+++|..+...+...
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~- 88 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE- 88 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence 44678999999999999999999999999886 2356889999999999999999999999886432210
Q ss_pred hhhccCChHHHHH-HhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 040749 481 TIGLSDGIPPLVD-LLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPE 559 (643)
Q Consensus 481 ~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~ 559 (643)
...++.|.. ++.+.++.++..|+.+|.++....... ...+++.|+..+.++++.++..|+.+|.++..
T Consensus 89 ----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--- 157 (280)
T 1oyz_A 89 ----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND--- 157 (280)
T ss_dssp ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence 012233332 346778899999999999987432211 12457889999999999999999999987653
Q ss_pred hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
.+.++.|+.++.+.++.+|..|+.+|..+...++ .+++.|..++.+.++.+|..|...|..+.
T Consensus 158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999864443 35677888888888888888888887765
No 82
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.08 E-value=4.5e-11 Score=94.99 Aligned_cols=58 Identities=22% Similarity=0.454 Sum_probs=51.3
Q ss_pred CCCCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccH
Q 040749 270 VIPHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 328 (643)
...+++.||||++.+.+| ++++|||+||+.||.+|+... .+||.|+.++...++.+++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence 346789999999999998 889999999999999999875 5899999999988887753
No 83
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.8e-10 Score=95.65 Aligned_cols=55 Identities=24% Similarity=0.441 Sum_probs=48.6
Q ss_pred CCCCCccccccCcccccC----ceecCCCCccchHHHHHHHhcC--CCCCCCcCcccccCC
Q 040749 269 LVIPHEFLCPITLEIMRD----PVIIASGQTFERESVQKWFDSN--HRTCPKTRQTLAHLS 323 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~d----Pv~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~ 323 (643)
..+.+++.||||++.+.+ |++++|||+||+.||.+|+... ..+||.|+.++...+
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 457788999999999999 9999999999999999999964 468999999887643
No 84
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.05 E-value=4.5e-10 Score=132.28 Aligned_cols=273 Identities=13% Similarity=0.058 Sum_probs=194.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch--H
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN--K 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~--k 438 (643)
...++.+++.+.+.++++|..|+..+..+....+..-.. .-.+.++.|+.++..+++.++..|+.+|.+++..... +
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~ 251 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL 251 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence 356788888888999999999999999887544321100 0124678888989999999999999999999863221 1
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHh-----------cc--------
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLL-----------QN-------- 497 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL-----------~~-------- 497 (643)
..+ .+.++.++.++++.+++++..|+..+..++.....+..+.. ...+|.++..+ .+
T Consensus 252 ~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d 329 (852)
T 4fdd_A 252 PHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD 329 (852)
T ss_dssp GGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred HHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence 111 24678888888888899999999999998865443332221 24566776666 22
Q ss_pred ---CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHH
Q 040749 498 ---GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLV 574 (643)
Q Consensus 498 ---~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv 574 (643)
.+..+++.|+.+|..|+...+. .++ ..+++.+.+++.++++.++..|+.+|.+++........-.-.++++.++
T Consensus 330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~ 406 (852)
T 4fdd_A 330 DTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI 406 (852)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 2335688899999888753322 111 2356777777888889999999999999988543221112246788899
Q ss_pred HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 575 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
..+.+.++.+|..|+++|..++...+.......-.++++.|+..+.+.++++|..|.+.|..+.+
T Consensus 407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~ 471 (852)
T 4fdd_A 407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE 471 (852)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986422110011113578888888888999999999999998875
No 85
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.3e-10 Score=88.29 Aligned_cols=46 Identities=28% Similarity=0.744 Sum_probs=41.6
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCc
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKT 315 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~ 315 (643)
.+.+++.||||++.+.+|++++|||+||+.||.+|+.. +..+||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 56788999999999999999999999999999999874 56789987
No 86
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.04 E-value=1.8e-09 Score=127.14 Aligned_cols=274 Identities=15% Similarity=0.120 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHH----hcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIA----DCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~ 437 (643)
+.++.+++.+.++++..+..|+..|..+++..+..-..-. -...+|.|+++++++++.++..|+.+|.++......
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 5789999999999999999999999999865443211100 123678889999999999999999999988764332
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 517 (643)
...-.-...++.+..++.+++++++..|+.+|..++........-.-.+.++.++.++.+.++.++..|+.++.+++...
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence 11111235678888888889999999999999999754321110001357788888888888999999999999998654
Q ss_pred cchHHHHH---cCChHHHHHHh-----------cc-----------CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHH
Q 040749 518 ANKARAID---AGIVLPLMNLL-----------EE-----------RNLGMVDEALSILLLLATHPEGRHKIGQLSFIET 572 (643)
Q Consensus 518 ~n~~~lv~---~G~v~~Lv~lL-----------~~-----------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~ 572 (643)
..+. .+. ..+++.++..+ .+ .+..++..|..+|..++.... ..+. ..+++.
T Consensus 288 ~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~ 363 (852)
T 4fdd_A 288 ICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPL 363 (852)
T ss_dssp THHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHH
Confidence 3322 222 23456666665 22 123457778888888876432 1222 246777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 573 LVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 573 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+...+.+.++..|+.|+.+|..++.+.+..... .-.++++.|+..+.+.++++|..|.++|..+...
T Consensus 364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 430 (852)
T 4fdd_A 364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW 430 (852)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999877653322 2245789999999999999999999999887753
No 87
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.4e-10 Score=92.21 Aligned_cols=51 Identities=20% Similarity=0.172 Sum_probs=45.8
Q ss_pred CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
..+++.||||++.+.+|++++|||+||+.||.+|+..+ .+||.|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHh
Confidence 45679999999999999999999999999999999865 6899999987753
No 88
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.98 E-value=1.1e-10 Score=90.69 Aligned_cols=54 Identities=22% Similarity=0.454 Sum_probs=47.9
Q ss_pred CccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 273 HEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 273 ~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
+++.||||++.+.+| ++++|||+||+.||.+|+.. +.+||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 468899999999988 78899999999999999987 4589999999988776654
No 89
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.1e-10 Score=89.46 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=46.1
Q ss_pred CCCCCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 269 LVIPHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
..+++++.||||++.+.+| ++++|||+||..||.+|+.. ..+||.|+.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 3567889999999999998 88999999999999999987 4589999998764
No 90
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.94 E-value=7.1e-10 Score=89.37 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=47.1
Q ss_pred CCCCccccccCcccc--cCceecC--CCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749 270 VIPHEFLCPITLEIM--RDPVIIA--SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m--~dPv~~~--cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 324 (643)
.+.+++.||||++.+ .|+++.+ |||+||+.|+.+|+..+...||.|++++....+
T Consensus 7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 467889999999998 4667766 999999999999998777889999999886544
No 91
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.93 E-value=8e-10 Score=89.43 Aligned_cols=57 Identities=19% Similarity=0.428 Sum_probs=48.7
Q ss_pred CCCCccccccCcccccCc---eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 270 VIPHEFLCPITLEIMRDP---VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dP---v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
...+++.||||++.|.+| ++++|||+||+.||.+|+... .+||.|+..+....+.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence 456789999999999876 456999999999999999864 689999999988777665
No 92
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.91 E-value=7.1e-09 Score=115.90 Aligned_cols=264 Identities=14% Similarity=0.032 Sum_probs=196.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
..++.+...+.+.++.++..+++.|..++..-.. . ......+|.+..+++.+++.++..++.+|..+...-... .
T Consensus 324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~- 398 (588)
T 1b3u_A 324 QILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q- 398 (588)
T ss_dssp THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-H-
Confidence 4577788888999999999999999988743211 1 122347899999999989999999998888776421111 1
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~ 521 (643)
.....+|.+..++.+.++.+|..++.+|..++..-.. .......+|.+..++.+.+..++..|+.+|..++..-+..
T Consensus 399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~- 475 (588)
T 1b3u_A 399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE- 475 (588)
T ss_dssp HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-
Confidence 1235678888889888999999999999988642111 1122346788889999889999999999999987543222
Q ss_pred HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 040749 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSS 601 (643)
Q Consensus 522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~ 601 (643)
.....++|.|..++.+++..++..++.++..++..-. ... ....+++.+...+.+.++.+|..++.+|..++..-+.
T Consensus 476 -~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 476 -WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QDI-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp -HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HHH-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred -hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HHH-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence 2234578888888888888899999999999876321 111 2236788899999888999999999999999865332
Q ss_pred HHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 602 FILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 602 ~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
. .....+++.|..++.+.++++|..|...|..+.+
T Consensus 553 ~---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 553 S---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp H---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred h---hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 2 1224567888888888999999999999987753
No 93
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.89 E-value=1.4e-08 Score=113.50 Aligned_cols=227 Identities=14% Similarity=0.111 Sum_probs=163.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
..++.+...+.+.++.+|..|+..|..++...+.. ......+|.|..++..++..++..|+.+|..++..-... .
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~ 238 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D 238 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence 45667777788889999999999999998544321 223567899999999999999999999999887532211 1
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc--
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-- 519 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-- 519 (643)
.....++.+..++.+.++.+|..++.+|..++..-.. .......++.++.++++.++.++..|+.+|..++..-..
T Consensus 239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~ 316 (588)
T 1b3u_A 239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC 316 (588)
T ss_dssp HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence 2345788888899888999999999999998753211 112345789999999999999999999999998764322
Q ss_pred hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
+....-..++|.+..++.++++.++..++.+|..++..-.. .. .....++.+..++.+.++.+|..|+.+|..++.
T Consensus 317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~ 392 (588)
T 1b3u_A 317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392 (588)
T ss_dssp HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence 22123345677888888888888888888888777642111 11 112456777777777777777777777666654
No 94
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.86 E-value=1e-08 Score=110.95 Aligned_cols=273 Identities=15% Similarity=0.101 Sum_probs=187.7
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc
Q 040749 362 EEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 362 ~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~ 436 (643)
+.++.+++.+.++ ++..+..|+..|..++.+. +..-.... ...++.++.+|.++ ++.++..|+.++.++...-.
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~ 206 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK 206 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 8999999999999998643 21100001 23678888999887 78999999999998764211
Q ss_pred -h-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc--hhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749 437 -N-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN--KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512 (643)
Q Consensus 437 -~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 512 (643)
+ .......-.++.+...+.+++.+++..++.+|..+...... ...+. .+.++.++..+++.++.++..|+..+.+
T Consensus 207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 1 00111111355666677778899999999999998754321 11111 1667777888888888999999998888
Q ss_pred hccCCc------------------chHHHHH---cCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHh
Q 040749 513 LSLNQA------------------NKARAID---AGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKI 564 (643)
Q Consensus 513 Ls~~~~------------------n~~~lv~---~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i 564 (643)
++.... ....+++ ..++|.+++.+.+ .+..++..|..+|..++..-. ..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~ 363 (462)
T 1ibr_B 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (462)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence 875320 0001111 3356667777743 234678888899988876422 122
Q ss_pred hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 565 GQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 565 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
. ..+++.+...+.+.+...|+.|+.+|..++.+.. ...... -..+++.|+..+.+.++++|..|.++|..+...
T Consensus 364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2 2466777777788889999999999999987543 211111 156899999999999999999999999988754
No 95
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.82 E-value=2.6e-09 Score=80.06 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=41.6
Q ss_pred CccccccCcccccC----ceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 273 HEFLCPITLEIMRD----PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 273 ~~f~CpIc~~~m~d----Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+++.||||++.+.+ |++++|||+||..||.+|+... .+||.|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 46789999999976 7888999999999999999986 68999998764
No 96
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.81 E-value=7.6e-08 Score=108.48 Aligned_cols=264 Identities=17% Similarity=0.126 Sum_probs=182.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH-H
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK-R 439 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k-~ 439 (643)
...++.+.+.|.+.++.+|..|+.++..+...+++. +.+.++++.|..+|..+|+.++.+|+.+|..++.++... .
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~ 196 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL 196 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence 355777889999999999999999999999776653 233578899999999999999999999999998764321 0
Q ss_pred HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC---
Q 040749 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN--- 516 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--- 516 (643)
.-...+.+..|+..+...++..+.....+|..+...++.. ....++.+..++++.+..+...|+.++.++...
T Consensus 197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~ 272 (591)
T 2vgl_B 197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK 272 (591)
T ss_dssp CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence 0012344677777777788888888888888876432211 135677888888888999999999999998742
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chhh------------------HH-H------hhcCC--
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEG------------------RH-K------IGQLS-- 568 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~------------------~~-~------i~~~g-- 568 (643)
++.....+-..+.+.|+.++. ++++++-.|+..|..++. +++. |. + +....
T Consensus 273 ~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv 351 (591)
T 2vgl_B 273 DSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI 351 (591)
T ss_dssp TTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence 222222233445677776554 677888888888877764 1110 11 1 11222
Q ss_pred --cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 569 --FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 569 --~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
.++.|..++.+.+...+..++..+..++...+.... ..++.|+.++....+.++..+...++.+
T Consensus 352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i 417 (591)
T 2vgl_B 352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI 417 (591)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 234455555667888899999999998877653322 3567777777777666666665555544
No 97
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.80 E-value=2.2e-08 Score=114.71 Aligned_cols=194 Identities=15% Similarity=0.122 Sum_probs=153.5
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHH-HHhccCChhhHHHHHHHHHHhccC--Ccch
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV-DLLQNGTIRGKKDAVTALFNLSLN--QANK 520 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~--~~n~ 520 (643)
...|.++++.|++++++.|..|+++|.+|+.++..+..+...++|..++ .+|.+.+..++..|+++|.||+.. .+.+
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3456778888999999999999999999999888888888888887765 567888999999999999999965 4567
Q ss_pred HHHHHcCChHHHHHHhccCC---------------------hhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHh
Q 040749 521 ARAIDAGIVLPLMNLLEERN---------------------LGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIR 578 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~---------------------~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~ 578 (643)
..+++.|++++|..+|.... ..+.+.++.+|++||. +.+....+...+.++.|+..|.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 78999999999999985410 1345678899999987 5566777888899999999885
Q ss_pred cC---ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCc---HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 579 EG---TPKNKECATAVLLELGANNSSFILAALQYGV---YEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 579 ~~---s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~---i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
+. ...++..|+.+|..++..++.....+.+.+. +..|..+..+.++ .+..+.++|.++.
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~ 257 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVF 257 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHh
Confidence 42 3578999999999999999988888877654 4444444444443 4667778888764
No 98
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=1.3e-09 Score=86.14 Aligned_cols=52 Identities=27% Similarity=0.569 Sum_probs=46.1
Q ss_pred CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
.+.+.+.||||++.+.+ ++++|||+||..||.+|+.. ..+||.|+.++...+
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence 46778999999999999 99999999999999999984 568999999887654
No 99
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.79 E-value=3.6e-09 Score=83.10 Aligned_cols=48 Identities=23% Similarity=0.434 Sum_probs=42.5
Q ss_pred CccccccCcccccCc-eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 273 HEFLCPITLEIMRDP-VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 273 ~~f~CpIc~~~m~dP-v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
++..||||++.+.+| +.++|||+||..||.+|+..+ .+||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence 457899999999997 678999999999999999865 589999998764
No 100
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.78 E-value=2.6e-08 Score=114.13 Aligned_cols=217 Identities=15% Similarity=0.093 Sum_probs=158.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHH-HhCCCCChHHHHHHHHHHHHhcCCc--ch
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDSKILEHAVTAVLNLSIDE--SN 437 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~d~~~~~~a~~~L~nLs~~~--~~ 437 (643)
...+..+++.|+|++++.|..|+.+|.+++ .++.+|..+...|+|+.++ .+|..++.++++.|+++|.||+.+. +.
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~-~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~ 111 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIV-QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF 111 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHH-cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence 456778999999999999999999999999 5889999999999988765 5788889999999999999999754 45
Q ss_pred HHHHHhcCChHHHHHHhcCC--------------C-------HHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHh
Q 040749 438 KRLIAQQGAIPAIIEILQSG--------------S-------TEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLL 495 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~--------------~-------~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL 495 (643)
...++..|++++|..+|+.. . .++..+++.+|++|+... +....+...+.++.|+.+|
T Consensus 112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L 191 (684)
T 4gmo_A 112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL 191 (684)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence 67788999999999988531 0 234567888999998554 4555677789999999998
Q ss_pred ccC---ChhhHHHHHHHHHHhccCCcchHH-HHHcCChHHHHHHh--ccCChhhHHHHHHHHHHHhC------ChhhHHH
Q 040749 496 QNG---TIRGKKDAVTALFNLSLNQANKAR-AIDAGIVLPLMNLL--EERNLGMVDEALSILLLLAT------HPEGRHK 563 (643)
Q Consensus 496 ~~~---~~~~~~~A~~aL~nLs~~~~n~~~-lv~~G~v~~Lv~lL--~~~~~~~~~~Al~~L~~La~------~~~~~~~ 563 (643)
.+. ..++...|+.+|++|+........ +.+.|....+..++ ...+......++++|.|+.. .......
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~~~~~d~s~~~~~ 271 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTSLQWMDHSPGKDG 271 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHTCBTTBCCGGG
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhhhhhhhcchhhHH
Confidence 543 357889999999999986555444 55555433322222 23444556778899999842 1222333
Q ss_pred hhcCCcHHHHHHHHh
Q 040749 564 IGQLSFIETLVEYIR 578 (643)
Q Consensus 564 i~~~g~i~~Lv~lL~ 578 (643)
+...-.++.+...+.
T Consensus 272 ~~~~~li~~l~~~l~ 286 (684)
T 4gmo_A 272 ACDAILIPTLTRALE 286 (684)
T ss_dssp CSGGGTHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHh
Confidence 333344555555443
No 101
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=5.6e-09 Score=83.48 Aligned_cols=52 Identities=21% Similarity=0.494 Sum_probs=44.7
Q ss_pred CCCCccccccCcccccCceec---CCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 270 VIPHEFLCPITLEIMRDPVII---ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~dPv~~---~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
+..++..||||++.+.+|..+ +|||+||+.||.+|+... .+||.|+.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence 567788999999999887554 999999999999999875 4899999987653
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.75 E-value=2e-09 Score=81.01 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.+++.||||++.+.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467899999999999999999999999999873 4689999988764
No 103
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.75 E-value=5.4e-09 Score=78.28 Aligned_cols=49 Identities=31% Similarity=0.651 Sum_probs=42.3
Q ss_pred CCCccccccCcccccC---ceecC-CCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 271 IPHEFLCPITLEIMRD---PVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~d---Pv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+.++..||||++.+.+ ++.++ |||.||..||.+|+.. +.+||.|+.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 3467889999999988 78887 9999999999999986 468999998764
No 104
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.73 E-value=1.1e-08 Score=80.48 Aligned_cols=52 Identities=25% Similarity=0.450 Sum_probs=43.5
Q ss_pred CCCCccccccCccccc---CceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 270 VIPHEFLCPITLEIMR---DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~---dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
...++..||||++.+. ++++++|||+||..||.+|+..+ .+||.|+..+...
T Consensus 10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQ 64 (69)
T ss_dssp STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCSC
T ss_pred cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccCc
Confidence 3456789999999885 45778999999999999999875 4799999987753
No 105
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.73 E-value=3.1e-09 Score=95.23 Aligned_cols=55 Identities=22% Similarity=0.459 Sum_probs=48.6
Q ss_pred CCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749 272 PHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn 327 (643)
++++.||||++.+.+| ++++|||+||+.||.+|+... .+||.|++.+....+.++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence 5679999999999999 899999999999999999865 489999999987766554
No 106
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.70 E-value=9.7e-09 Score=85.64 Aligned_cols=51 Identities=22% Similarity=0.476 Sum_probs=44.1
Q ss_pred CCCCccccccCcccccC---ceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 270 VIPHEFLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 270 ~~~~~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
...++..||||++.+.+ ++.++|||.||..||.+|+... .+||.|+..+..
T Consensus 36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP 89 (91)
T ss_dssp SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence 34567899999999987 7888999999999999999864 589999988764
No 107
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.70 E-value=1.7e-07 Score=105.57 Aligned_cols=255 Identities=16% Similarity=0.130 Sum_probs=186.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
++.+..+-+.|.+++.+.+..++..+-.+...+.+. ..+.+.+++++.+++..++..+..++.+++.... +.
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--e~ 83 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--DM 83 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH--HH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc--hH
Confidence 456788889999999888887776555443222211 2356778899999999999888888887765221 11
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
+ .-++..+.+-|.++++.+|..|+.+|+++.. ++. ....++.+..++.+.++.+++.|+.++.++....+..
T Consensus 84 ~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~-----~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~ 155 (591)
T 2vgl_B 84 A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKI-----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM 155 (591)
T ss_dssp H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGG-----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHH-----HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh
Confidence 1 2346777778888999999999999998862 221 1334678999999999999999999999998744332
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH-HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR-HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
+.+.+.++.|..+|.++++.++..|+.+|..++...... ......+.+..|+..+...++..+-..+.+|..++..+
T Consensus 156 --~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 156 --VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp --HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred --cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 233578899999999999999999999999998754211 11111245777888888888888888888888887665
Q ss_pred HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
+.... .+++.+..++.+.++.++..|.+++..+.
T Consensus 234 ~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~ 267 (591)
T 2vgl_B 234 DREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFL 267 (591)
T ss_dssp HHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred hHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence 54332 35667777788888888888888887764
No 108
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=81.97 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=43.6
Q ss_pred CCCccccccCcccccCc---eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 271 IPHEFLCPITLEIMRDP---VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dP---v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
..++..||||++.+.++ +.++|||.||..||.+|+... .+||.|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence 34668899999999988 678999999999999999875 589999988765
No 109
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.66 E-value=1.6e-08 Score=88.20 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=42.3
Q ss_pred CCccccccCcccccCce------------------ecCCCCccchHHHHHHHh----cCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPV------------------IIASGQTFERESVQKWFD----SNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv------------------~~~cg~ty~r~~I~~~~~----~~~~~cP~~~~~l~~ 321 (643)
+.+..||||++.|.+|+ +++|||.||+.||.+|+. ..+.+||.|+..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 34568999999998876 679999999999999996 345689999988764
No 110
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.59 E-value=1.6e-08 Score=105.21 Aligned_cols=51 Identities=24% Similarity=0.359 Sum_probs=45.6
Q ss_pred CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
....||||++.+.+|++++|||+||..||.+|+..+..+||.|+.++....
T Consensus 331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 347999999999999999999999999999999866678999999887643
No 111
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.59 E-value=9e-09 Score=82.25 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=40.9
Q ss_pred CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.+++.|+||++.+.+||+++|||+ ||..|+.+| ..||.|+.++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 456889999999999999999999 999999998 579999998765
No 112
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.59 E-value=1.5e-06 Score=98.34 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=174.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA 442 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~ 442 (643)
.....++.+.+.+.+.++-+--.+..++..+++.... ++..|.+-|.++++.++..|+.+|+++... .+.
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~ 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH
Confidence 4556677778888888887777888888666543222 456778888899999999999999999831 222
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH
Q 040749 443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR 522 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 522 (643)
...++.+...|.+.++.+|..|+.++.++..... ..+ .+.++.+..+|.+.++.++..|+.+|..++..+.....
T Consensus 141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence 3467888899999999999999999999875321 111 36788888889888999999999999999865432211
Q ss_pred HHHcCChHHHHHHhcc---------------CChhhHHHHHHHHHHHhCC-hhhHHH-----------------------
Q 040749 523 AIDAGIVLPLMNLLEE---------------RNLGMVDEALSILLLLATH-PEGRHK----------------------- 563 (643)
Q Consensus 523 lv~~G~v~~Lv~lL~~---------------~~~~~~~~Al~~L~~La~~-~~~~~~----------------------- 563 (643)
.. ...++.++.+|.+ .++-.+...+.+|..++.. ++....
T Consensus 216 ~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~ 294 (618)
T 1w63_A 216 HF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL 294 (618)
T ss_dssp HH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence 11 2566777766643 2445555566666666542 111100
Q ss_pred ------hhc--------CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHH
Q 040749 564 ------IGQ--------LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRK 629 (643)
Q Consensus 564 ------i~~--------~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~ 629 (643)
+.. ..++..|..++.+.++.+|..|+..|..++...+... ......++..+.+.+..+|.+
T Consensus 295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHH
Confidence 000 0245666677777777888888888877776544321 124556777777778888888
Q ss_pred HHHHHHHHHhh
Q 040749 630 ANALLQLISKS 640 (643)
Q Consensus 630 A~~lL~~L~~~ 640 (643)
|..+|..+.+.
T Consensus 370 alelL~~l~~~ 380 (618)
T 1w63_A 370 AMELSFALVNG 380 (618)
T ss_dssp HHHHHHHHCCS
T ss_pred HHHHHHHHccc
Confidence 88888777654
No 113
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.57 E-value=2.2e-06 Score=96.95 Aligned_cols=251 Identities=14% Similarity=0.104 Sum_probs=183.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-HHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-KRL 440 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~~ 440 (643)
..++.+.+.|.+.++.++..|+.++..+...+|+.. .++++.+..+|...|+.++..|+.+|..++..+.. ...
T Consensus 142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence 457888899999999999999999999998777543 26888899999999999999999999999875432 122
Q ss_pred HHhcCChHHHHHHhcC---------------CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc------CC
Q 040749 441 IAQQGAIPAIIEILQS---------------GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN------GT 499 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~------~~ 499 (643)
+ ...++.++.+|.. .++..+...+.+|..+...+... ....++.|..++.. .+
T Consensus 217 ~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~ 290 (618)
T 1w63_A 217 F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG 290 (618)
T ss_dssp H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence 2 3678888887763 37888888899998887543211 12344555555432 23
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE 579 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~ 579 (643)
..+...|+.++.++...+ .+. ..++..|..++.+.++.++..|+..|..++.... .++. .....++..+.+
T Consensus 291 ~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d 361 (618)
T 1w63_A 291 NAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKD 361 (618)
T ss_dssp HHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGS
T ss_pred HHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccC
Confidence 467788888888875432 222 2467888899988888999999999999876421 1222 356677888888
Q ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 580 GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 580 ~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
.+..+|..|+.+|..++.... ... +++.|...+.+.++..|..+...+..+..
T Consensus 362 ~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~ 414 (618)
T 1w63_A 362 LDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE 414 (618)
T ss_dssp SCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 889999999999999987532 111 35667777777788888888887777764
No 114
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.56 E-value=1e-06 Score=103.18 Aligned_cols=270 Identities=12% Similarity=0.083 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch---
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN--- 437 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~--- 437 (643)
..++.+.+.+.+.+|..+..|+..+..++.... ..-.... ...+|.|+..+..+++.++..++++|..++..-..
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~ 447 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID 447 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence 456667777888899999999999999995432 2111111 24788999999989999999999999988752110
Q ss_pred -HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--chhhhhc--cCChHHHHHHhccCC--hhhHHHHHHHH
Q 040749 438 -KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--NKITIGL--SDGIPPLVDLLQNGT--IRGKKDAVTAL 510 (643)
Q Consensus 438 -k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~i~~Lv~lL~~~~--~~~~~~A~~aL 510 (643)
... -...++.++..+.+. +.++..|+++|.+++..-. ....+.. ...++.|+.++.+.+ ..++..++.+|
T Consensus 448 ~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 448 PQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp TTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred CHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 111 123577788888765 8999999999998874311 0111211 356778888887533 67889999999
Q ss_pred HHhccCCcc-hHHHHHcCChHHHHHHhccC---------------ChhhHHHHHHHHHHHhCChhhHHHhh--cCCcHHH
Q 040749 511 FNLSLNQAN-KARAIDAGIVLPLMNLLEER---------------NLGMVDEALSILLLLATHPEGRHKIG--QLSFIET 572 (643)
Q Consensus 511 ~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~~---------------~~~~~~~Al~~L~~La~~~~~~~~i~--~~g~i~~ 572 (643)
..+...... ....+. .+++.+++.+... ...++..++.+|.+++..-.. .+. -...++.
T Consensus 525 ~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~ 601 (861)
T 2bpt_A 525 TTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGL 601 (861)
T ss_dssp HHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHH
T ss_pred HHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHH
Confidence 998764433 222222 3566677666531 234566788888888753211 111 1246777
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 573 LVEYIREGTP-KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 573 Lv~lL~~~s~-~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
++..+...+. .+++.++.++..++...+....... ..+++.|...+.+.++.++..|..++..+.+
T Consensus 602 l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN 668 (861)
T ss_dssp HHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 8888887766 8899999998888764332222211 2378888888887888899999888876654
No 115
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.56 E-value=1.8e-06 Score=82.46 Aligned_cols=218 Identities=17% Similarity=0.154 Sum_probs=165.7
Q ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-ch
Q 040749 359 EQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SN 437 (643)
Q Consensus 359 ~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~ 437 (643)
...+.+..++.+|...|+.++..|+..|..+.+.-+..-....-...+|.++.++++.|..+--.|+.+|..|-.+. -.
T Consensus 30 ~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 30 EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence 34568999999999999999999999999999875444444433458999999999999999999999999987743 33
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~ 517 (643)
...+.. .+..+..++++++.-.+.+|+..|..|...... .+.+..+.+++.+.+.+++..|++++.|++...
T Consensus 110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 444432 467888999999999999999999999433322 456788999998889999999999999999765
Q ss_pred cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH--------hcCChHHHHHHH
Q 040749 518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI--------REGTPKNKECAT 589 (643)
Q Consensus 518 ~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL--------~~~s~~~~e~A~ 589 (643)
++..- -.+++.-+-.+|++.++.+++.|+.+|..+.+.+=- ...++.+.+++ ..|.|..+..|-
T Consensus 182 ~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~ 253 (265)
T 3b2a_A 182 ADSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISRIVDGLVYREGAPIIRLKAK 253 (265)
T ss_dssp SSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHH
T ss_pred CCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 43221 134566678889899999999999999999886422 23333333333 246777777775
Q ss_pred HHH
Q 040749 590 AVL 592 (643)
Q Consensus 590 ~~L 592 (643)
.+-
T Consensus 254 ~v~ 256 (265)
T 3b2a_A 254 KVS 256 (265)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 116
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.51 E-value=1.2e-06 Score=102.80 Aligned_cols=274 Identities=10% Similarity=0.048 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhH-HHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cc
Q 040749 361 KEEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENR-ILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ES 436 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~ 436 (643)
...++.+++.+.+. +++++..|++.+..++..-..+- ........++.+...+..++.+++..++.+|..+... ..
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 35577788888876 68899999999998774322110 0011112577778888888999999999999998763 22
Q ss_pred hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc----------------h--hhhhc---cCChHHHHHHh
Q 040749 437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN----------------K--ITIGL---SDGIPPLVDLL 495 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~----------------k--~~i~~---~g~i~~Lv~lL 495 (643)
.-...+....++.++..+.+.++.++..|+..+..++..... + ..... ...++.++..+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 212222336788888888888889999999888888643100 0 00110 34566777777
Q ss_pred cc-------CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh--hhHHHhhc
Q 040749 496 QN-------GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP--EGRHKIGQ 566 (643)
Q Consensus 496 ~~-------~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~--~~~~~i~~ 566 (643)
.. .+...+..|+.+|..++..-.. .++ ..+++.+...+.+.++.++..|+.+|..++... +......
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~- 406 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV- 406 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence 52 3567888999999888753221 112 235566667777788999999999999998743 2222222
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH--HHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFI--LAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~--~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
...++.++..+.+.++.+|..|+++|.+++...+... ... -..+++.|+..+.+. ++++..|.++|..+.+.
T Consensus 407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 3578889999998899999999999999987543211 000 124677788887764 89999999999887653
No 117
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.48 E-value=2.8e-06 Score=99.57 Aligned_cols=273 Identities=15% Similarity=0.087 Sum_probs=186.5
Q ss_pred HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhHHHHHh--cCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCC-
Q 040749 362 EEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENRILIAD--CGAIPPLVQLLPYP--DSKILEHAVTAVLNLSID- 434 (643)
Q Consensus 362 ~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~- 434 (643)
..++.+++.+.++ ++..+..++..+..++..... ..+.. ...++.+...+..+ +..++..|+.+|.++...
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4688999999988 899999999999999854211 11211 23567788888876 688999999999988752
Q ss_pred cch-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-hhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749 435 ESN-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512 (643)
Q Consensus 435 ~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 512 (643)
..+ .........++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+.+
T Consensus 206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~ 285 (876)
T 1qgr_A 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 285 (876)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111 001111125666777777778999999999999887532211 111123677888887777788899999988888
Q ss_pred hccCCc---------------------chHHHHHcCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHh
Q 040749 513 LSLNQA---------------------NKARAIDAGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKI 564 (643)
Q Consensus 513 Ls~~~~---------------------n~~~lv~~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i 564 (643)
++.... +..+-.-..+++.++..+.. .+..++..|..+|..++..-. ..+
T Consensus 286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~ 363 (876)
T 1qgr_A 286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI 363 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGG
T ss_pred HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hhh
Confidence 874310 01000013356677777752 345678888888888876322 122
Q ss_pred hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 565 GQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 565 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.. .+++.+...+.+.++..|+.|+.+|..++.+.. ....... ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus 364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 438 (876)
T 1qgr_A 364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (876)
T ss_dssp HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 22 456666677777889999999999999987654 3332222 44789999999999999999999999988764
No 118
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.45 E-value=3.8e-08 Score=88.06 Aligned_cols=57 Identities=23% Similarity=0.462 Sum_probs=50.0
Q ss_pred CCCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccH
Q 040749 271 IPHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 328 (643)
.++.+.||||++.+.+| +.++|||+||..||.+|+... .+||.|+.++...++.|++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence 35678999999999988 888999999999999999875 5899999999888777653
No 119
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=6.3e-08 Score=77.51 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=39.9
Q ss_pred CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.+++.||||++.+.+||+++|||+ ||..|+.++ ..||.|+.++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 456889999999999999999999 999999653 579999998875
No 120
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.37 E-value=5.4e-06 Score=96.97 Aligned_cols=273 Identities=13% Similarity=0.094 Sum_probs=183.7
Q ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHH--HhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCC-c
Q 040749 362 EEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILI--ADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSID-E 435 (643)
Q Consensus 362 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i--~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~-~ 435 (643)
..++.|++.+.++ ++..+..|+..+..+++.-......+ .-...++.++..+.++ +..++..|+.+|.++... +
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~ 213 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999988 89999999999998886432110000 0122466777777776 789999999999987531 1
Q ss_pred ch-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc--hhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749 436 SN-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN--KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512 (643)
Q Consensus 436 ~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 512 (643)
.+ .........++.+...+.+++++++..++.+|..+...... ...+ ....++.+...+.+.+..++..|+.++..
T Consensus 214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~ 292 (861)
T 2bpt_A 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWST 292 (861)
T ss_dssp HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 11 00000122466667777788899999999999988753221 1111 11556667777778888999999999988
Q ss_pred hccCCcc-----------------h-HHHHHcCChHHHHHHhccC-------ChhhHHHHHHHHHHHhCChhhHHHhhcC
Q 040749 513 LSLNQAN-----------------K-ARAIDAGIVLPLMNLLEER-------NLGMVDEALSILLLLATHPEGRHKIGQL 567 (643)
Q Consensus 513 Ls~~~~n-----------------~-~~lv~~G~v~~Lv~lL~~~-------~~~~~~~Al~~L~~La~~~~~~~~i~~~ 567 (643)
++..... . ...+ ..+++.++..+... +..++..|..+|..++..-. ..+. .
T Consensus 293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~ 368 (861)
T 2bpt_A 293 ICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-E 368 (861)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-H
T ss_pred HHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-H
Confidence 8754211 0 1111 44677788877642 24577888889988876321 1111 1
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.+++.+...+.+.+...|+.|+.+|..++.+.. ......+. .+++.|+..+.+.++.+|..|.++|..+...
T Consensus 369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~ 441 (861)
T 2bpt_A 369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS 441 (861)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 345666666677788999999999999997643 33333322 4788999999999999999999988877653
No 121
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.36 E-value=5.7e-07 Score=109.97 Aligned_cols=270 Identities=10% Similarity=0.069 Sum_probs=186.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
..+..++..+.+.+.+.|..|...|.+..+.+...-..-.....++.|++.|.+.++.+|..|+.+|.+++..-.. ..+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~ 84 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV 84 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence 4688899999999999999999999887643311000001123577889999988999999999999999863222 111
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch------hhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhc
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK------ITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLS 514 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs 514 (643)
...++.++..|.+++..+|..|+.+|..++..-... ..-.....+|.|+..+. +.+...+..|+.+|..++
T Consensus 85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 235677888888888888999999998876432111 00112467899999998 478899999999999987
Q ss_pred cCCcc-hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHHHHHH
Q 040749 515 LNQAN-KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECATAVL 592 (643)
Q Consensus 515 ~~~~n-~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L 592 (643)
...+. -.. .-..+++.|+..|.+++..++..|+.+|..++...... +. ...++.++..+...+ +..+..++.++
T Consensus 163 ~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l 238 (1230)
T 1u6g_C 163 SRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCI 238 (1230)
T ss_dssp HHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred HHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHH
Confidence 42111 000 01235566777777788899999999999998753221 22 346888888887543 45677788888
Q ss_pred HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
..++...+..... .-..+++.++..+.+.++.+|+.|..++..+.+
T Consensus 239 ~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~ 284 (1230)
T 1u6g_C 239 AAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 284 (1230)
T ss_dssp HHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 8887654332111 014689999999988889999999988887765
No 122
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.36 E-value=7.7e-08 Score=80.67 Aligned_cols=49 Identities=12% Similarity=0.209 Sum_probs=41.0
Q ss_pred CccccccCcccccCceec---CCCCccchHHHHHHHhc----C---CCCCCC--cCcc--ccc
Q 040749 273 HEFLCPITLEIMRDPVII---ASGQTFERESVQKWFDS----N---HRTCPK--TRQT--LAH 321 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~---~cg~ty~r~~I~~~~~~----~---~~~cP~--~~~~--l~~ 321 (643)
+.|.||||++.+.+|+++ +|||.||+.|+.+|+.. + ...||. |+.. ++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 468999999999999765 69999999999999973 2 247999 9887 554
No 123
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=2.1e-07 Score=75.56 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=40.2
Q ss_pred CccccccCcccccC--------------ceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 273 HEFLCPITLEIMRD--------------PVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 273 ~~f~CpIc~~~m~d--------------Pv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
++-.|+||++.|.+ ++.+ +|||.|+..||.+|+... .+||.|++++...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcchh
Confidence 45679999999977 4455 599999999999999875 5899999987643
No 124
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.35 E-value=9.3e-07 Score=95.40 Aligned_cols=266 Identities=11% Similarity=0.097 Sum_probs=178.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc-h-HH
Q 040749 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES-N-KR 439 (643)
Q Consensus 364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~-~-k~ 439 (643)
+..++..+.+++.+.|.+|-..|..+.+.+ ..+++..|+.++.+. +..+|..|+..|.|+..... . ..
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~ 74 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA 74 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence 456677777889999999999998876421 123566777777654 67899999999999864321 0 00
Q ss_pred H-------H---HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhHHHHH
Q 040749 440 L-------I---AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGKKDAV 507 (643)
Q Consensus 440 ~-------i---~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~ 507 (643)
. + .....-..|+..|.+.+..+ ..++.++..++..+.... .-.+.++.|+..+.++ ++..+..|+
T Consensus 75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 0 0 01122345677777776667 778888888875432210 1267899999999888 889999999
Q ss_pred HHHHHhccCC-cchHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHHhCChh-hHH-HhhcCCcHHHHHHHHhcCCh
Q 040749 508 TALFNLSLNQ-ANKARAIDAGIVLPLMNLLEER--NLGMVDEALSILLLLATHPE-GRH-KIGQLSFIETLVEYIREGTP 582 (643)
Q Consensus 508 ~aL~nLs~~~-~n~~~lv~~G~v~~Lv~lL~~~--~~~~~~~Al~~L~~La~~~~-~~~-~i~~~g~i~~Lv~lL~~~s~ 582 (643)
.+|..++..- .....-.-..+++.++..+.+. +..++..|+.++.++...-+ .-. .....-.++.+...+.+.++
T Consensus 152 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 231 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT 231 (462)
T ss_dssp HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence 9999998532 1110001123677788888776 68899999999998765321 100 00111135556666667788
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 583 KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 583 ~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.++..++.+|..++...+......+..++++.++..+.+.++.++..|...+..+.+.
T Consensus 232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999876554322222226788888888888999999999988877653
No 125
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.31 E-value=2.8e-07 Score=71.18 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=42.9
Q ss_pred CCccccccCcccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPVII--ASGQT-FERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~--~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
+++..|+||++...|++++ ||||. ||..|+.+|+..+ ..||.|++++..
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchhc
Confidence 4567899999999999988 99999 8999999999754 579999998764
No 126
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.31 E-value=2.5e-07 Score=71.25 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=42.4
Q ss_pred CccccccCcccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749 273 HEFLCPITLEIMRDPVII--ASGQT-FERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~--~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.+..|+||++...|++++ ||||. ||..|+.+|+..+ ..||.|++++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence 356799999999999988 99998 9999999999765 589999998764
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.22 E-value=8.8e-06 Score=80.35 Aligned_cols=184 Identities=13% Similarity=0.054 Sum_probs=136.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCCcchHHHHH
Q 040749 448 PAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQANKARAID 525 (643)
Q Consensus 448 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~lv~ 525 (643)
+.+.+.+.+.++..|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-.....-.-
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4577888889999999999999988754 2211100 1355778888884 88999999999999999853221111112
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHH-H
Q 040749 526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN-NSSF-I 603 (643)
Q Consensus 526 ~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~-~ 603 (643)
..+++.|+..+.+.+..+++.|..+|..++..... ..+++.+...+.+.++.+|..++..|..+... ++.. .
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 34788999999998999999999999999875321 13577888888888999999999999996443 3431 1
Q ss_pred HHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749 604 LAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639 (643)
Q Consensus 604 ~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~ 639 (643)
...+ ..+++.|+.++.+.++++|..|..++..+..
T Consensus 171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1222 2579999999999999999999999988764
No 128
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.19 E-value=1.1e-06 Score=75.04 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=39.3
Q ss_pred ccccccCcccccCc------------------eecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 274 EFLCPITLEIMRDP------------------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 274 ~f~CpIc~~~m~dP------------------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+-.|+||++.|.+| +.++|||.|+..||.+|+.. +.+||.|++...
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 46799999999876 34689999999999999986 568999998754
No 129
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.18 E-value=7.9e-06 Score=99.86 Aligned_cols=231 Identities=10% Similarity=0.090 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH--
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK-- 438 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k-- 438 (643)
...++.+++.|.+.++.+|..|+..|..++..-+. ..+ ...++.|+..|.++++.+|..|+.+|..++..-...
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 46788899999999999999999999999864433 111 235778888888888899999999998887521111
Q ss_pred ----HHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749 439 ----RLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL 513 (643)
Q Consensus 439 ----~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 513 (643)
..-.....+|.|+..+. ++++..+..|+.+|..++........-.-...++.|+..|.+.+..++..|+.+|..+
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11113457889999998 5789999999999999874211100001134667777778888889999999999999
Q ss_pred ccCCcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcCChHHHHHHHH
Q 040749 514 SLNQANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREGTPKNKECATA 590 (643)
Q Consensus 514 s~~~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~~e~A~~ 590 (643)
+...+.. + -...++.|+..|... +...+..++.++..++..... .+.. ...++.++..+.+.++.+|+.|+.
T Consensus 203 ~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~ 277 (1230)
T 1u6g_C 203 VMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ 277 (1230)
T ss_dssp TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred HHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 8654432 1 234578888888653 235566677777777653211 2221 467899999998888999999999
Q ss_pred HHHHHhcCCH
Q 040749 591 VLLELGANNS 600 (643)
Q Consensus 591 ~L~~L~~~~~ 600 (643)
++..++...+
T Consensus 278 ~l~~l~~~~~ 287 (1230)
T 1u6g_C 278 AFESFVRRCP 287 (1230)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHHHCh
Confidence 9988887544
No 130
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.17 E-value=6.1e-05 Score=85.04 Aligned_cols=254 Identities=12% Similarity=0.109 Sum_probs=174.0
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 362 EEIVSLVEQL--SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 362 ~~i~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
..++.+.+.| .+.++.++..|+.++..+.+.+|+.- ...+.++.|..+|...|+.++.+|+.+|..++.++..
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~-- 220 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE-- 220 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence 4566777888 78899999999999999997766532 2247899999999988999999999999998864321
Q ss_pred HHHhcCChHHHHHHhc----CC-------------CHHHHHHHHHHHHhccccc--cchhhhhccCChHHHHHHhc----
Q 040749 440 LIAQQGAIPAIIEILQ----SG-------------STEARENSAAALFSLSMLD--ENKITIGLSDGIPPLVDLLQ---- 496 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~----~~-------------~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~---- 496 (643)
.+ ...++.+++.|. .+ ++..+.....+|..+...+ +.+..+. +.+..++..+.
T Consensus 221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k 296 (621)
T 2vgl_A 221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK 296 (621)
T ss_dssp HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence 11 123444444332 22 5788888888888887532 2222221 23333433221
Q ss_pred -----cCC--hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc
Q 040749 497 -----NGT--IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF 569 (643)
Q Consensus 497 -----~~~--~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~ 569 (643)
+.+ ..+...|+.++..+...++ ++. .++..|..+|.+.+++++-.|+..|..++........+ . ..
T Consensus 297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~-~~ 369 (621)
T 2vgl_A 297 SKKVQHSNAKNAVLFEAISLIIHHDSEPN----LLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K-TH 369 (621)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-TT
T ss_pred cccccccchHHHHHHHHHHHHHhcCCcHH----HHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-HH
Confidence 112 2677788888888863222 111 35678889998888999999999999998754222222 2 35
Q ss_pred HHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 570 IETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 570 i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
...++..+. +.++.++..|+.+|..++.. .+... ++..|...+.+.+...++.+...+..+.
T Consensus 370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 370 IETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 677888888 88899999999999999843 34333 4556777777777777777776666554
No 131
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.16 E-value=3.1e-07 Score=74.10 Aligned_cols=46 Identities=20% Similarity=0.385 Sum_probs=40.3
Q ss_pred CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
.++..|+||++.+.+||.+||||. ||..|+.+|. .||.|+.++...
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 345789999999999999999999 9999998873 799999988753
No 132
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.16 E-value=3.9e-06 Score=82.90 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=136.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCchhH-HHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcc-hHHHHH
Q 040749 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENR-ILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDES-NKRLIA 442 (643)
Q Consensus 366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~-~k~~i~ 442 (643)
.+.+.+.+.+|..|..|+..|..+....+..- ..+ ...++.|...|. ..+..++..|+.+|..|+..-. .-...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~- 95 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY- 95 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-
Confidence 47788899999999999999999986533210 000 124667788884 8899999999999999985311 11111
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-Ccc--
Q 040749 443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QAN-- 519 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n-- 519 (643)
-...++.|+..+.+.+..+|..|..+|..+...... ...++.+...+++.++.++..++.+|..+... ...
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~ 169 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL 169 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence 234789999999999999999999999998754321 24678888899999999999999999996433 221
Q ss_pred hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 557 (643)
-...+ ..+++.|+.++.+.++.++..|..++..++..
T Consensus 170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 12222 25789999999999999999999999998763
No 133
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.10 E-value=5.9e-07 Score=93.09 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=41.9
Q ss_pred CCCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
+.+++.||||++.+.+||.+||||+ ||+.|+.+| ..||.|+.++..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4567999999999999999999999 999999988 579999998764
No 134
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.08 E-value=6.7e-07 Score=79.62 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=92.7
Q ss_pred cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749 403 CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482 (643)
Q Consensus 403 ~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i 482 (643)
...++.|+.+|.++++.++..|+.+|.++.. ..++.|+.+|++.++.+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence 3578889999999999999999888876642 136899999999999999999999988752
Q ss_pred hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749 483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLL 553 (643)
Q Consensus 483 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~ 553 (643)
..+++.|+.+|.+.++.++..|+.+|.++.. ..+++.|..++.++++.++..|+.+|..
T Consensus 72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999999998862 2357889999988888899988888754
No 135
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.07 E-value=0.0001 Score=70.60 Aligned_cols=220 Identities=14% Similarity=0.086 Sum_probs=159.0
Q ss_pred CcHHHHHhCCCCChHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhh
Q 040749 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDE--SNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKIT 481 (643)
Q Consensus 405 ~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~--~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~ 481 (643)
.+..|..+|...|+.++.+|+.+|.++-+.- .-+..+ -...++.++.++++.+..+.-.|+.+|..|-.... ....
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence 5667889999999999999999999998752 223333 34579999999999999999999999998864422 2222
Q ss_pred hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR 561 (643)
Q Consensus 482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 561 (643)
+ .-.+.+|.+++.++++-....|+..+..|......+ +++..+..++.+.+..++..++.+|.+++...+..
T Consensus 113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~ 184 (265)
T 3b2a_A 113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS 184 (265)
T ss_dssp H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence 2 235688899999999999999999999884333222 24567788888899999999999999998844322
Q ss_pred HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-H-HHHHHHHCCcHHHHHHHh-hcCCHHHHHHHHHHHHHH
Q 040749 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-S-FILAALQYGVYEHLIQLT-EGGTSRAQRKANALLQLI 637 (643)
Q Consensus 562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~-~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~L 637 (643)
..+ ..++.-+-.+|.+.++..++.|+.+|..+.+..- + ....+ .++....-.+. ..|.|..+.+|..+-..+
T Consensus 185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREGAPIIRLKAKKVSDLI 259 (265)
T ss_dssp CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence 211 2456667788999999999999999999876521 1 11111 11122222344 578999999998765554
No 136
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=3.7e-06 Score=65.60 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=40.0
Q ss_pred CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.++..|+||++...++|.+||||. ||..|+.. ...||.|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 456889999999999999999999 99999984 3589999998765
No 137
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.02 E-value=0.00014 Score=82.17 Aligned_cols=262 Identities=16% Similarity=0.167 Sum_probs=166.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA 442 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~ 442 (643)
.....++.+.+.+...++-+--.+..+++.+++.-.. ++..+.+=|.++++.++..|+.+|+++... .+.
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-----e~~ 144 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSR-----EMA 144 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-----HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-----HHH
Confidence 3566778888999998888888888888766643322 345666777788999999999999999641 132
Q ss_pred hcCChHHHHHHh--cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749 443 QQGAIPAIIEIL--QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520 (643)
Q Consensus 443 ~~g~i~~Lv~lL--~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~ 520 (643)
...++.+.+.| .+.++.+|..|+-++..+...+. ..+-..+.++.+..+|.+.++.++..|+.+|..++...+..
T Consensus 145 -~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~ 221 (621)
T 2vgl_A 145 -EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE 221 (621)
T ss_dssp -HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred -HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence 34678889999 78899999999999999875322 22222589999999999889999999999999987644221
Q ss_pred -----H-------HHHHcCCh----------------HHHHHHhcc----CChhhHHHHHHHHHHHhC----Ch-----h
Q 040749 521 -----A-------RAIDAGIV----------------LPLMNLLEE----RNLGMVDEALSILLLLAT----HP-----E 559 (643)
Q Consensus 521 -----~-------~lv~~G~v----------------~~Lv~lL~~----~~~~~~~~Al~~L~~La~----~~-----~ 559 (643)
. .++..+-. -.++++|.. ++++..+....+|..+.. .+ .
T Consensus 222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~ 301 (621)
T 2vgl_A 222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ 301 (621)
T ss_dssp HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence 0 11111111 012222221 122222222222222110 00 0
Q ss_pred hHH---H--------hh--------cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh
Q 040749 560 GRH---K--------IG--------QLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE 620 (643)
Q Consensus 560 ~~~---~--------i~--------~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~ 620 (643)
.+. . +. -..++..|..++.+.++..|..|+..|..++...+.. .++ ......++..+.
T Consensus 302 ~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~-~~~~~~i~~~L~ 378 (621)
T 2vgl_A 302 HSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAV-KTHIETVINALK 378 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHH-HTTHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHH-HHHHHHHHHHhc
Confidence 000 0 00 0124555666666667788888888888887665421 112 234667777777
Q ss_pred -cCCHHHHHHHHHHHHHHHhh
Q 040749 621 -GGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 621 -~g~~~~k~~A~~lL~~L~~~ 640 (643)
+.+..+|.+|..+|..+.+.
T Consensus 379 ~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 379 TERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp TCCCHHHHHHHHHHHHHHCCH
T ss_pred cCCCHhHHHHHHHHHHHHcCh
Confidence 88999999999998877643
No 138
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=6.2e-06 Score=66.45 Aligned_cols=52 Identities=17% Similarity=0.319 Sum_probs=42.9
Q ss_pred CCCccccccCcccc--cCceecCCC-----CccchHHHHHHHhcC-CCCCCCcCcccccC
Q 040749 271 IPHEFLCPITLEIM--RDPVIIASG-----QTFERESVQKWFDSN-HRTCPKTRQTLAHL 322 (643)
Q Consensus 271 ~~~~f~CpIc~~~m--~dPv~~~cg-----~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~ 322 (643)
..++..|+||++-+ .+|+++||+ |.|...||.+|+... ..+||.|+..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34567899999877 478989996 999999999999964 46899999987643
No 139
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.99 E-value=5.3e-07 Score=80.31 Aligned_cols=120 Identities=20% Similarity=0.209 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
...++.++..|.+.++.++..|++.|..+.. ..++.|+.+|.++++.++..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD------- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence 3567889999999999999988888776541 136999999999999999999999998862
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 512 (643)
..+++.|+..|+++++.+|..|+++|..+. ...+++.|+.++++.+..++..|+.+|.+
T Consensus 72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 235899999999999999999999999874 34578999999998899999999988764
No 140
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.93 E-value=0.00019 Score=76.42 Aligned_cols=263 Identities=13% Similarity=0.119 Sum_probs=169.5
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcH--HHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcC--Ch
Q 040749 373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP--PLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQG--AI 447 (643)
Q Consensus 373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g--~i 447 (643)
.+++-.+..+...+..+++.++.....+- ..+. .++..|.+ .+...+.-++.+|..|...++.|..+.+.+ .+
T Consensus 136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~ 213 (480)
T 1ho8_A 136 GDFQTVLISGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM 213 (480)
T ss_dssp SSHHHHHHHHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHH
T ss_pred ccchHHHHHHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchh
Confidence 34444555666665555533322111110 0111 44555554 245567778999999999999999887543 46
Q ss_pred HHHHHHhcC---------------C--CHHHHHHHHHHHHhccccccchhhhhccCCh--HHHHHHhccC-ChhhHHHHH
Q 040749 448 PAIIEILQS---------------G--STEARENSAAALFSLSMLDENKITIGLSDGI--PPLVDLLQNG-TIRGKKDAV 507 (643)
Q Consensus 448 ~~Lv~lL~~---------------~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~A~ 507 (643)
++++.+++. + ...++.+++-++|-||..++....+...+.. +.|+..++.. ...+.+-++
T Consensus 214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~l 293 (480)
T 1ho8_A 214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCI 293 (480)
T ss_dssp HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHH
Confidence 677654431 1 2567889999999999988766666655533 6777777654 578889999
Q ss_pred HHHHHhccCCc-ch----HHHH-HcCChHHHHHHhcc---CChhhHHHHHHHHHHH-------hC---------------
Q 040749 508 TALFNLSLNQA-NK----ARAI-DAGIVLPLMNLLEE---RNLGMVDEALSILLLL-------AT--------------- 556 (643)
Q Consensus 508 ~aL~nLs~~~~-n~----~~lv-~~G~v~~Lv~lL~~---~~~~~~~~Al~~L~~L-------a~--------------- 556 (643)
.+|.||..... +. ..++ ..++ +++++.|.. .|+++.+..-.+...| ++
T Consensus 294 a~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W 372 (480)
T 1ho8_A 294 SIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW 372 (480)
T ss_dssp HHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred HHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence 99999987542 21 2233 2344 556666655 6777765543333322 11
Q ss_pred ChhhH---------HHhhcC--CcHHHHHHHHhc----------CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHH
Q 040749 557 HPEGR---------HKIGQL--SFIETLVEYIRE----------GTPKNKECATAVLLELGANNSSFILAALQYGVYEHL 615 (643)
Q Consensus 557 ~~~~~---------~~i~~~--g~i~~Lv~lL~~----------~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L 615 (643)
+|-.+ ..+.+. ..+..|+++|.+ .++.+..-|+.=+..++++.|..+..+-+.|+=..+
T Consensus 373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V 452 (480)
T 1ho8_A 373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI 452 (480)
T ss_dssp CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence 12121 123232 357889999974 235556666666888998888888877788999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHH
Q 040749 616 IQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 616 ~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
++++.+.++++|..|..+++.+-
T Consensus 453 M~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 453 MELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp HHHTSCSSHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888653
No 141
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.88 E-value=2.5e-05 Score=77.67 Aligned_cols=188 Identities=9% Similarity=0.105 Sum_probs=133.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHH-hhccCchhHHHHHh-cCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCc---chHHH
Q 040749 367 LVEQLSSSKLEVQKEAVRKIRL-LSKENPENRILIAD-CGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDE---SNKRL 440 (643)
Q Consensus 367 Lv~~L~s~~~~~~~~A~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~---~~k~~ 440 (643)
+-+.+.|.+|..|..|+..|.. +....+.......+ ...+..|.+.+ +..+..++..|+.+|..++..- .....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 5667789999999999999999 87443321100001 12466777788 6778999999999999998521 11101
Q ss_pred HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh-h-ccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc
Q 040749 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI-G-LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i-~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 518 (643)
.. .-.++.++..+.+....++..+..+|-.+...-.. ... . -...++.|+..|++.++.++..++.+|..+.....
T Consensus 101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence 21 23688999999888888988888888887643211 111 0 12467888888999999999999999998875443
Q ss_pred ch-HH---HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 519 NK-AR---AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 519 n~-~~---lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
.. .. .+...++|.|.+++.+.++.++..|..+|..++.
T Consensus 179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 21 22 2235789999999999999999999999998864
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.87 E-value=8.9e-05 Score=73.64 Aligned_cols=189 Identities=12% Similarity=0.108 Sum_probs=135.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHh-cccc-ccchhhhhc-cCChHHHHHHh-ccCChhhHHHHHHHHHHhccCC---cch-
Q 040749 449 AIIEILQSGSTEARENSAAALFS-LSML-DENKITIGL-SDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLNQ---ANK- 520 (643)
Q Consensus 449 ~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~---~n~- 520 (643)
.+...+.+.++.-|..|+..|.. +... ++....-.. ...+..|...+ ++.+..++..|+.+|..|+..- ...
T Consensus 20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34567788899999999999999 8642 221110122 34577788888 6778889999999999998522 211
Q ss_pred HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhh--cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIG--QLSFIETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~--~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
... .-+++.+++.+.+....+++.+..+|..++.+-+- .... -..+++.|+..|.+.++.+|+.++..|..++..
T Consensus 100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 221 22688899999888888999988888888763211 1111 113677888888888999999999999998865
Q ss_pred CH---HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 599 NS---SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 599 ~~---~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
.+ ......+...+++.|..++.+.++.+|..|..+|..+.+.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 54 2222333367999999999999999999999999887653
No 143
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.83 E-value=0.00017 Score=73.18 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=123.2
Q ss_pred HHHHHHhccCChhhHHHHHHHHHH-hccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc-
Q 040749 489 PPLVDLLQNGTIRGKKDAVTALFN-LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ- 566 (643)
Q Consensus 489 ~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~- 566 (643)
..++.-|.+++.+.++.++.-|.. +.....-...++..+++..|+.+....+.+.+..++.+|.+|-.+..|...+++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~ 200 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence 344555667788888888888887 566777889999999999999999989999999999999999999999988875
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH--------C--CcHHHHHHHhh---cCCHHHHHHHHHH
Q 040749 567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQ--------Y--GVYEHLIQLTE---GGTSRAQRKANAL 633 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~--------~--g~i~~L~~ll~---~g~~~~k~~A~~l 633 (643)
..+|..+..++.+....+...|+++|..+|.+++.....+.+ . -..+.|+.++. +++..++.+|..+
T Consensus 201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL 280 (339)
T 3dad_A 201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL 280 (339)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 468999999999878889999999999999887644433322 1 23779999997 7899999999999
Q ss_pred HHHH
Q 040749 634 LQLI 637 (643)
Q Consensus 634 L~~L 637 (643)
+..+
T Consensus 281 IN~l 284 (339)
T 3dad_A 281 INKT 284 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8855
No 144
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.79 E-value=3.2e-06 Score=73.14 Aligned_cols=46 Identities=15% Similarity=0.376 Sum_probs=0.4
Q ss_pred ccccccCcccccCce-----------------e-cCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 274 EFLCPITLEIMRDPV-----------------I-IASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv-----------------~-~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+-.|+||++.|.+|. + .+|||.|+..||.+|+.. +.+||.|+.+..
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 357999999998753 2 489999999999999987 468999998754
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.66 E-value=0.00068 Score=68.89 Aligned_cols=178 Identities=12% Similarity=0.045 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~ 440 (643)
.-.+..++..|.+++....+.++..|+.+...+.+.-..++..+|+..|++.....+..++..++++|.+|-.+..+...
T Consensus 117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g 196 (339)
T 3dad_A 117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG 196 (339)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence 35688889999998999999999999995557788889999999999999999999999999999999999999888877
Q ss_pred HH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhc--------c--CChHHHHHHhc---cCChhhHHH
Q 040749 441 IA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGL--------S--DGIPPLVDLLQ---NGTIRGKKD 505 (643)
Q Consensus 441 i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~--------~--g~i~~Lv~lL~---~~~~~~~~~ 505 (643)
++ ....|..+..++.+....+.+.|..+|..+....+ +...+.. . -.++.|+.+|+ +++.+.+.+
T Consensus 197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~ 276 (339)
T 3dad_A 197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY 276 (339)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence 76 55688999999998888999999999999876554 3222211 1 24789999997 678889998
Q ss_pred HHHHHHHhccCCcc---hHHHH----HcCChHHHHHHhcc
Q 040749 506 AVTALFNLSLNQAN---KARAI----DAGIVLPLMNLLEE 538 (643)
Q Consensus 506 A~~aL~nLs~~~~n---~~~lv----~~G~v~~Lv~lL~~ 538 (643)
|...|-.+....+. +..++ +.|+-..+..++..
T Consensus 277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 88777665443222 22333 24444445555544
No 146
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.51 E-value=0.0069 Score=70.10 Aligned_cols=234 Identities=12% Similarity=0.047 Sum_probs=157.6
Q ss_pred HHHHHHHHhcCCC--------HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC
Q 040749 363 EIVSLVEQLSSSK--------LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID 434 (643)
Q Consensus 363 ~i~~Lv~~L~s~~--------~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~ 434 (643)
.+..|...|.+.+ +.++..|+..|+...-.+.. ..+++.|..+|..++..+++.|+.+|+-+-..
T Consensus 430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vG 502 (963)
T 4ady_A 430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLG 502 (963)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence 4566666676544 55677777777775432211 11466778888777776777777777766433
Q ss_pred cchHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHH
Q 040749 435 ESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFN 512 (643)
Q Consensus 435 ~~~k~~i~~~g~i~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~n 512 (643)
..|.. ++..|+..+ ...+..++..++-.|..+.. ++...++.+++.|.. .++-++..|+.++.-
T Consensus 503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~algl 568 (963)
T 4ady_A 503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIAL 568 (963)
T ss_dssp CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 33322 234555544 34467788888888876643 456678999998875 567778777777765
Q ss_pred hccCCcchHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH-hcCChHHHHHHHH
Q 040749 513 LSLNQANKARAIDAGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI-REGTPKNKECATA 590 (643)
Q Consensus 513 Ls~~~~n~~~lv~~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~~e~A~~ 590 (643)
-.....|.. +|+.|+..+. +.+..++..|+..|+.++... ...++.++.++ ++.++.+|..|+.
T Consensus 569 AyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--------~e~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 569 AYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--------YTTVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp HTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS--------CSSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred HhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 555555543 3555666654 467788888998888876533 13466666644 5688999999999
Q ss_pred HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
+|..+|.+++. ..++..|..++.+.++.+++.|...|..+-
T Consensus 635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 99999877652 135677788888888888888887777653
No 147
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.49 E-value=0.001 Score=69.09 Aligned_cols=266 Identities=11% Similarity=0.024 Sum_probs=143.7
Q ss_pred CCccHHHHHHHHHHHHhccccCCCCCCCCcchhchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhc
Q 040749 324 IAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC 403 (643)
Q Consensus 324 l~pn~~l~~~i~~~~~~~~~~~p~~~~~~~~~~s~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~ 403 (643)
..+|..+|.++=-+.....-. |. . --..+..+.+.++++++-++-.|++.|..+.. ++.-..
T Consensus 78 ~s~d~~lKrLvYLyl~~~~~~-~~---e--------~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~---- 139 (355)
T 3tjz_B 78 QSNDPTLRRMCYLTIKEMSCI-AE---D--------VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA---- 139 (355)
T ss_dssp GCCCHHHHHHHHHHHHHHTTT-SS---C--------GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH----
T ss_pred cCCCHHHHHHHHHHHHHhCCC-HH---H--------HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH----
Confidence 356788888875544432111 10 0 12457788899999999999999999999973 332222
Q ss_pred CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh
Q 040749 404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG 483 (643)
Q Consensus 404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~ 483 (643)
..+.+.+.|.+.++.++..|+-+...|.... .+.+ .+.++.+-+++.+.++-+..+|.++|..+...+.
T Consensus 140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~------ 208 (355)
T 3tjz_B 140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR------ 208 (355)
T ss_dssp -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH------
T ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch------
Confidence 3456778888999999999999999887543 2222 3689999999999999999999999999976431
Q ss_pred ccCChHHHHHHhccCC---hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 040749 484 LSDGIPPLVDLLQNGT---IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG 560 (643)
Q Consensus 484 ~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~ 560 (643)
.++..|+..+..+. +-++..-++.+..+...++ .-.....++.+...|++.++.+.-+|+.++..+...+..
T Consensus 209 --~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~ 283 (355)
T 3tjz_B 209 --LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK 283 (355)
T ss_dssp --HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred --HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence 14555666665542 2222222222222222210 012234556666777778888999999999888653221
Q ss_pred HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHH
Q 040749 561 RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANA 632 (643)
Q Consensus 561 ~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~ 632 (643)
+. ..++..|..++.+.++..|-.|+..|..+....|..++. .-.-+.+++.+++.-+.-.|..
T Consensus 284 ---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait 346 (355)
T 3tjz_B 284 ---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAIT 346 (355)
T ss_dssp --------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred ---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence 11 234666777888888999999999999998877755433 3344556666666655555543
No 148
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.43 E-value=0.026 Score=52.00 Aligned_cols=212 Identities=17% Similarity=0.172 Sum_probs=146.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC-Ccch
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI-DESN 437 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~-~~~~ 437 (643)
+...+..++..|..+-|-+|..|+..+..+++..++...-+. ..|+-+++ ++....-.....+++.++. .++-
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 567899999999999999999999999999988887655443 34555544 4444554555677777764 2211
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
- .+.+|.|..=..-|++.++.+.+.+|..+... ++.- .+.+.-+..++.+.+..-+ +.+|.-++.-
T Consensus 105 v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dk---l~aLnFi~al 171 (253)
T 2db0_A 105 V-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDK---LTALNFIEAM 171 (253)
T ss_dssp H-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHH---HHHHHHHHTC
T ss_pred H-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHH---HHHHHHHHHH
Confidence 1 23455566666778999999999999888632 2211 3456677788887664444 4445555555
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
.+|..+-+.. .+|.|..+|.+.+.-++..|+.+|.+++. ++.-|.. |...++-+.+.|..++......|..+
T Consensus 172 Gen~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 172 GENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp CTTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred hccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 6776665543 68899999999999999999999999998 5554433 33345556667777777766666665
Q ss_pred h
Q 040749 596 G 596 (643)
Q Consensus 596 ~ 596 (643)
.
T Consensus 245 ~ 245 (253)
T 2db0_A 245 L 245 (253)
T ss_dssp H
T ss_pred H
Confidence 4
No 149
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.41 E-value=0.0012 Score=68.64 Aligned_cols=244 Identities=9% Similarity=0.032 Sum_probs=151.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA 442 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~ 442 (643)
.....++.+.+.+...++-.--.+..+++..++. | =++..|.+=+.++++-++-.|+++|+++...+-.
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~----- 137 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML----- 137 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH-----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH-----
Confidence 3455677888999998888777888888663331 1 1466777777888999999999999999754311
Q ss_pred hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH
Q 040749 443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR 522 (643)
Q Consensus 443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~ 522 (643)
....+.+-+.|.+.++.++..|+-+...|.... ...+ .++++.+-+++.+.++-+..+|+.+|+.+...+..
T Consensus 138 -~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~--- 209 (355)
T 3tjz_B 138 -QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL--- 209 (355)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred -HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence 123456677888899999999999988886432 2222 36899999999999999999999999999865421
Q ss_pred HHHcCChHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 523 AIDAGIVLPLMNLLEER---NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 523 lv~~G~v~~Lv~lL~~~---~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
++..|+..+... ++-.+..-+.++..++...+.. .....++.+...|++.++.+.-.|+.++..+....
T Consensus 210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~ 281 (355)
T 3tjz_B 210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS 281 (355)
T ss_dssp -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence 344455555442 2222222333333333221000 12345666677778889999999999998885533
Q ss_pred HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
... -..++..|..++.+.++.+|--|...|..+.
T Consensus 282 ~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~ 315 (355)
T 3tjz_B 282 AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVA 315 (355)
T ss_dssp -----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 221 1234667777788888888877776666554
No 150
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.28 E-value=0.019 Score=67.19 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=176.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch---hHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC--Ccc
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE---NRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI--DES 436 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~--~~~ 436 (643)
+.+..+...+...... ..|+..+..++..... .--.++ +.+|.++..+......++..|-.++..+.. ++.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5666667776654322 7888888888854321 112222 578888888888888999888877777654 222
Q ss_pred hHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749 437 NKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNL 513 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL 513 (643)
.. ...+|.|+..|.+. .+..+..|+.++..|+... ...++. ...||.+...+.+..+++++.|..++..+
T Consensus 130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~ 202 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA 202 (986)
T ss_dssp GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence 22 33578888888765 5999999999999998644 344544 68899999999998999999999999999
Q ss_pred ccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCC----cHHHHHHHHhcCChHHHHHHH
Q 040749 514 SLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLS----FIETLVEYIREGTPKNKECAT 589 (643)
Q Consensus 514 s~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g----~i~~Lv~lL~~~s~~~~e~A~ 589 (643)
|..-.|+.. ...+|.|++-+.+++. +.++ +..|+.+--. .. +.+- .+|.|.+-|...+...+..++
T Consensus 203 ~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~---~~~l~~~tfv-~~-v~~~~l~~~~p~l~r~l~~~~~~~~r~~~ 272 (986)
T 2iw3_A 203 TETVDNKDI---ERFIPSLIQCIADPTE--VPET---VHLLGATTFV-AE-VTPATLSIMVPLLSRGLNERETGIKRKSA 272 (986)
T ss_dssp GGGCCCTTT---GGGHHHHHHHHHCTTH--HHHH---HHHHTTCCCC-SC-CCHHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred HhcCCCcch---hhhHHHHHHHhcChhh--hHHH---HHHhhcCeeE-ee-ecchhHHHHHHHHHhhhccCcchhheeeE
Confidence 876555421 3467888888876643 4444 4455442100 00 1112 245555555666788899999
Q ss_pred HHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHhh
Q 040749 590 AVLLELGA--NNSSFILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQLISKS 640 (643)
Q Consensus 590 ~~L~~L~~--~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~L~~~ 640 (643)
-+.-|||. .+|..+..++ ...+|-|...... .+|++|+.|...+..|.+-
T Consensus 273 ~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 273 VIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred EEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 99999996 4665444432 4577777776654 4899999999999888653
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.18 E-value=0.0023 Score=68.16 Aligned_cols=231 Identities=14% Similarity=0.145 Sum_probs=151.0
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcC--CcHHHHHhCCC---------------C--ChHHHHHHH
Q 040749 366 SLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCG--AIPPLVQLLPY---------------P--DSKILEHAV 425 (643)
Q Consensus 366 ~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~---------------~--d~~~~~~a~ 425 (643)
.++..|.+. +.+.+.-++..+..+. ..++.|..+.+.+ .+|.++.+++. + ..+++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 455666653 4556677888888888 4678898887643 36666543321 1 346788999
Q ss_pred HHHHHhcCCcchHHHHHhcCCh--HHHHHHhcCC-CHHHHHHHHHHHHhccccc--cchh----hhhccCChHHHHHHhc
Q 040749 426 TAVLNLSIDESNKRLIAQQGAI--PAIIEILQSG-STEARENSAAALFSLSMLD--ENKI----TIGLSDGIPPLVDLLQ 496 (643)
Q Consensus 426 ~~L~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~--~~k~----~i~~~g~i~~Lv~lL~ 496 (643)
-+++-|+.+++....+...+.. +.|+.+++.. ...+...+.++|.||.... .... .+...++ +.++..|.
T Consensus 250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS 328 (480)
T ss_dssp HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence 9999999988877777655533 5666777654 4788888999999998654 1111 2222333 55666665
Q ss_pred cC---ChhhHHHHHHH-------HHHhcc---------------CCcchH-HHHH----------cCChHHHHHHhcc--
Q 040749 497 NG---TIRGKKDAVTA-------LFNLSL---------------NQANKA-RAID----------AGIVLPLMNLLEE-- 538 (643)
Q Consensus 497 ~~---~~~~~~~A~~a-------L~nLs~---------------~~~n~~-~lv~----------~G~v~~Lv~lL~~-- 538 (643)
.. +++...+--.. +..+++ .+..+. .+.. -.++..|+++|.+
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~ 408 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV 408 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence 43 44433322111 111221 111221 2221 2256788999973
Q ss_pred --------CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 539 --------RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 539 --------~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
.++.+..-|+.=+..++. +|.||..+-+.|+=..++++|.+.++.+|.+|+.++..+..+
T Consensus 409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~ 477 (480)
T 1ho8_A 409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY 477 (480)
T ss_dssp HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 256667777777888877 799999888889989999999999999999999998876543
No 152
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.13 E-value=0.00042 Score=54.52 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=38.5
Q ss_pred ccccccCcccccCceec-CCCCccchHHHHHHHhcC-CCCCCCcCccccc
Q 040749 274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSN-HRTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~ 321 (643)
.-.|+||.+++..-..- .|||.|...||.+||+.. ..+||.|+.....
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 35799999998743333 799999999999999853 3689999987654
No 153
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.092 Score=48.38 Aligned_cols=211 Identities=15% Similarity=0.198 Sum_probs=142.1
Q ss_pred CCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhh
Q 040749 404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKIT 481 (643)
Q Consensus 404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~ 481 (643)
.++..++.+|..+-..+|.+|+..+.+++.. ++-...+ +..|+.+++ +....+.+..+.++..++.....
T Consensus 32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe--- 103 (253)
T 2db0_A 32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--- 103 (253)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH---
T ss_pred HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH---
Confidence 4678889999888889999999999999863 3333322 344555554 45667767777888877642111
Q ss_pred hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR 561 (643)
Q Consensus 482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~ 561 (643)
++ .+.+|.+..=.+-|++..+.+...+|..+....+. .-.+++.-+..++.+++..=+..|+..+..+..+.
T Consensus 104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~--- 175 (253)
T 2db0_A 104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS--- 175 (253)
T ss_dssp HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT---
T ss_pred HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC---
Confidence 11 23455555555678999999999999988753332 22345667888898777555556666666655432
Q ss_pred HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
..-+ .-.+|.|..+|++++.-+|..|+.+|.+++.-++..+..+ ..-++=+.+.++-++.+...-|..+
T Consensus 176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl 244 (253)
T 2db0_A 176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL 244 (253)
T ss_dssp HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2222 3579999999999999999999999999999998754433 2233334556666666665555433
No 154
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.10 E-value=0.0012 Score=70.73 Aligned_cols=242 Identities=12% Similarity=0.037 Sum_probs=157.0
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CCcHHHHHhCC---C----C---ChHHHHHHHHHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC--GAIPPLVQLLP---Y----P---DSKILEHAVTAVLN 430 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~---~----~---d~~~~~~a~~~L~n 430 (643)
....|+..|-++.|++|.-|+-.|+.+.+.....-...... ...-.|+.+|. - . -..+|+.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 67889999999999999999999999886543210000011 11222222221 1 1 24689999999999
Q ss_pred hcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHH
Q 040749 431 LSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTA 509 (643)
Q Consensus 431 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~a 509 (643)
+ .+-+.. ..++..++..+..+.++++..+.-.|.++ +..+.. .++++.++..|.+.+++++..|+.+
T Consensus 255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet 322 (800)
T 3oc3_A 255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL 322 (800)
T ss_dssp H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence 8 632222 23344444455777899999999999999 222222 5778888888899999999999999
Q ss_pred HHHhccCCcchHHHHHcCChHHHHHHhcc-CC-hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHH
Q 040749 510 LFNLSLNQANKARAIDAGIVLPLMNLLEE-RN-LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKEC 587 (643)
Q Consensus 510 L~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~-~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~ 587 (643)
|.-++ .++....+ +..+-..|.+ .+ .......+..|+.|++.+. .+......+|.|...+++.-+.+|..
T Consensus 323 LiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~~dp~LVPRL~PFLRHtITSVR~A 394 (800)
T 3oc3_A 323 LCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELSIPPERLKDIFPCFTSPVPEVRTS 394 (800)
T ss_dssp HTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred hhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccccChHHHHHHHhhhcCCcHHHHHH
Confidence 99888 22222221 2223333332 11 2234556777788877653 22233578999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCcHHHHH-HHhhcCCHHHHHHHHHHHH
Q 040749 588 ATAVLLELGANNSSFILAALQYGVYEHLI-QLTEGGTSRAQRKANALLQ 635 (643)
Q Consensus 588 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~-~ll~~g~~~~k~~A~~lL~ 635 (643)
++.+|..+. +. .++..+. .++-..++.+++.+..+-+
T Consensus 395 VL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 395 ILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999998877 22 2333333 4666778888877776654
No 155
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.05 E-value=0.00053 Score=51.73 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=39.6
Q ss_pred CccccccCcccccCceecCCCC-----ccchHHHHHHHhc-CCCCCCCcCcccc
Q 040749 273 HEFLCPITLEIMRDPVIIASGQ-----TFERESVQKWFDS-NHRTCPKTRQTLA 320 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~ 320 (643)
+.-.|.||++-..+|.+.||.. .|.+.|+++|+.. ++.+||.|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3467999999888888888653 6899999999984 6779999998765
No 156
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.97 E-value=0.0057 Score=71.50 Aligned_cols=261 Identities=12% Similarity=0.095 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc---hH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES---NK 438 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~---~k 438 (643)
..+..+++.++..+.+.+..|+..+..+...+...+ ....+.+..|.+.+...... +.|+.++..|+.... ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence 345557777776556667788888888775432211 11235677777777665333 889999999986432 22
Q ss_pred HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 040749 439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~ 516 (643)
+.+ -.+.++.++..+.+....++..|..++..+... +.+. + ...+|.|+..|.+. .+..+..|+.++..|+..
T Consensus 90 e~~-~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~ 164 (986)
T 2iw3_A 90 EPY-IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA 164 (986)
T ss_dssp HHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred ccc-hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 222 225788888888777777887777666665421 1111 1 45688999988765 689999999999999865
Q ss_pred CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
........=..+||.+.+.+.+..+++...|..++..+|..-+++.. ...+|.|++.+.+. .....++..|..-.
T Consensus 165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p--~~~~~~~~~l~~~t 239 (986)
T 2iw3_A 165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP--TEVPETVHLLGATT 239 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT--THHHHHHHHHTTCC
T ss_pred hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh--hhhHHHHHHhhcCe
Confidence 43222222256788888888888999999999999999875444421 36799999999864 33455555554432
Q ss_pred cC---CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749 597 AN---NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641 (643)
Q Consensus 597 ~~---~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~ 641 (643)
.- ....... .+|.|.+=+...+...+++++-++.||++..
T Consensus 240 fv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 240 FVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp CCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred eEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence 11 1111111 3566666666778889999999999999854
No 157
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.83 E-value=0.078 Score=61.43 Aligned_cols=205 Identities=15% Similarity=0.057 Sum_probs=138.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchHH
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNKR 439 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k~ 439 (643)
...+..|+..|.+.+...+..|+..|+.+.-.. .|.. ++..|+..+ ...+..++..++..|+.+...
T Consensus 471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence 456777888888777666667777777663222 1111 344555543 344677888888888776532
Q ss_pred HHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCC
Q 040749 440 LIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 440 ~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~ 517 (643)
....++.+++.|.. .++-+|..++.++.--.... ++..+|..|+..+. +.+..++..|+.+|..+....
T Consensus 539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT------Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~ 609 (963)
T 4ady_A 539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGT------GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD 609 (963)
T ss_dssp ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS------CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence 34567788887764 56778877776665332221 22345677777664 446788999999999877554
Q ss_pred cchHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749 518 ANKARAIDAGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG 596 (643)
Q Consensus 518 ~n~~~lv~~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~ 596 (643)
+ ..++.++.+|. +.++.++..|..+|..++..... ..++..|..++.+.++.++.+|+.+|..+.
T Consensus 610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 3 24666777664 47888999999999998653211 245778888888889999999999999988
Q ss_pred cCCH
Q 040749 597 ANNS 600 (643)
Q Consensus 597 ~~~~ 600 (643)
.+..
T Consensus 676 ~gtn 679 (963)
T 4ady_A 676 IQQT 679 (963)
T ss_dssp TTCC
T ss_pred cCCc
Confidence 6543
No 158
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.021 Score=57.18 Aligned_cols=186 Identities=14% Similarity=0.162 Sum_probs=122.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCchhH--HH-HHhcC-CcHHHHHhCCCCChHHHHHHHHHHHHhcCC---cc-hH
Q 040749 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENR--IL-IADCG-AIPPLVQLLPYPDSKILEHAVTAVLNLSID---ES-NK 438 (643)
Q Consensus 367 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r--~~-i~~~g-~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~---~~-~k 438 (643)
|-+.|.|.+|..|..|+..|..+....+... .. +...+ .++.+.+.+...+..++..++.+|..++.. .. .+
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 5688999999999999999998775433211 11 11122 455566788888999999999999887642 11 11
Q ss_pred H--HHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749 439 R--LIAQQGAIPAIIEI-LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL 515 (643)
Q Consensus 439 ~--~i~~~g~i~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~ 515 (643)
. ...-...++.|+.- |.++...++..|..++..+....... ...++.++..+.+.++.++..++..|..+..
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 12234567777764 77777888888888887765322111 1234566667788899999999988887653
Q ss_pred C--Ccc-hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749 516 N--QAN-KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH 557 (643)
Q Consensus 516 ~--~~n-~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~ 557 (643)
. ... -....-..+++.+..+|.+.++.+++.|..++..+-..
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 2 111 11111123456678888889999999999999888653
No 159
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.74 E-value=0.00096 Score=54.73 Aligned_cols=46 Identities=11% Similarity=0.194 Sum_probs=38.6
Q ss_pred ccccCcccccC-ceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 276 LCPITLEIMRD-PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 276 ~CpIc~~~m~d-Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.|++|.-.+.. ..++||+|.||..|+..|...+..+||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 48888776653 35679999999999999998888899999988774
No 160
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.33 E-value=0.00074 Score=68.24 Aligned_cols=49 Identities=20% Similarity=0.471 Sum_probs=38.8
Q ss_pred CccccccCcccccC----cee----cCCCCccchHHHHHHHhcCC----------CCCCCcCccccc
Q 040749 273 HEFLCPITLEIMRD----PVI----IASGQTFERESVQKWFDSNH----------RTCPKTRQTLAH 321 (643)
Q Consensus 273 ~~f~CpIc~~~m~d----Pv~----~~cg~ty~r~~I~~~~~~~~----------~~cP~~~~~l~~ 321 (643)
..-.|+||...+.+ |.. ..|||.|...||.+||.+.. .+||.|+++++.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34579999999886 422 36999999999999998521 369999998874
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.91 E-value=0.28 Score=47.70 Aligned_cols=227 Identities=18% Similarity=0.200 Sum_probs=147.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHH-------hCCCCC-----hHHHHHHHHHHH
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQ-------LLPYPD-----SKILEHAVTAVL 429 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~-------lL~~~d-----~~~~~~a~~~L~ 429 (643)
.+..++..|.++ +.+..|+.+|..--...++.--.+=. .|.+..|++ .++.+. +.-..+|+..|-
T Consensus 4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 344555556543 45777777666533222222222222 355555532 333321 223467777888
Q ss_pred HhcCCcchHHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhccccccc--hhhhhccCChHHHHHHhccCChhh
Q 040749 430 NLSIDESNKRLIAQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDEN--KITIGLSDGIPPLVDLLQNGTIRG 502 (643)
Q Consensus 430 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~ 502 (643)
-++.+++.|..+..++..--|--.|+..+ ...|-.+..++..|...++. -..+.+.+.||..++.+..|+.-.
T Consensus 82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS 161 (268)
T 2fv2_A 82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS 161 (268)
T ss_dssp HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence 88999999999999887666666776543 56788889999998865442 233446899999999999999999
Q ss_pred HHHHHHHHHHhccCCcchHHHHH--------cCChHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHHHhhc-------
Q 040749 503 KKDAVTALFNLSLNQANKARAID--------AGIVLPLMNLL-EERNLGMVDEALSILLLLATHPEGRHKIGQ------- 566 (643)
Q Consensus 503 ~~~A~~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~------- 566 (643)
|..|...+..+-.++.+-..+.. ..++..++.-+ .++++.+..+.+.+-..|+.++..++++..
T Consensus 162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr 241 (268)
T 2fv2_A 162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK 241 (268)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence 99999999988766655433321 22333333333 448889999999999999999999988754
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749 567 LSFIETLVEYIREGTPKNKECATAVLLEL 595 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L 595 (643)
.|.+. .++ .+++..+..-...+.++
T Consensus 242 d~tf~---~~l-~~D~~~k~~l~qLl~n~ 266 (268)
T 2fv2_A 242 DTTFA---QVL-KDDTTTKRWLAQLVKNL 266 (268)
T ss_dssp SSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred ChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence 22222 223 25677776666666554
No 162
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.82 E-value=0.066 Score=53.02 Aligned_cols=180 Identities=13% Similarity=0.163 Sum_probs=120.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-CcHHHHHhCCCCChHHHHHHHHHHHHhcC---CcchHHH
Q 040749 365 VSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCG-AIPPLVQLLPYPDSKILEHAVTAVLNLSI---DESNKRL 440 (643)
Q Consensus 365 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~---~~~~k~~ 440 (643)
+.+...|.+.++..+.+|+..|......+++ ..+.... .++++.-.+...+..+...++.+|..+.. ....+-.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence 3456677778898899999988887644432 2222211 23444333445688888888887776532 1111110
Q ss_pred HHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749 441 IAQ-QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519 (643)
Q Consensus 441 i~~-~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n 519 (643)
-.+ .-.+|.|+.-+......+|..+-.++..+... ......++.++.-+++.+.+.+..++..+..+-...+-
T Consensus 127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 011 23689999988777788888888887776532 11134667788888888999999999888887542222
Q ss_pred hHHHHHcCCh---HHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 520 KARAIDAGIV---LPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 520 ~~~lv~~G~v---~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
. ...++ +.+.+++.+.+..+++.|+.++..+-.
T Consensus 201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 2 24478 999999999999999999988886643
No 163
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=95.42 E-value=0.048 Score=64.62 Aligned_cols=251 Identities=9% Similarity=0.082 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC------CCChHHHHHHHHHHHHhcCCcchHHHHHhc-----C
Q 040749 377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP------YPDSKILEHAVTAVLNLSIDESNKRLIAQQ-----G 445 (643)
Q Consensus 377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~-----g 445 (643)
..+..|...|..++...+ ..+.. -.++.+...+. +.+...++.|+.+++.++........-... .
T Consensus 376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~ 451 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN 451 (960)
T ss_dssp CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence 456677777777775432 11111 12333333444 456788899999999997531110000000 1
Q ss_pred ChH----HHHHHhcCC---CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc
Q 040749 446 AIP----AIIEILQSG---STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 446 ~i~----~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~ 518 (643)
..+ .++..|.+. ++.+|..|+++|..++..- .+.. -...++.++..|.+.+..++..|+.||.+++....
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~ 528 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE 528 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence 111 223334555 7899999999999998641 1111 24567888888888889999999999999986421
Q ss_pred ---------chHHHHH--cCChHHHHHHhccCC---h--hhHHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHHHhc-
Q 040749 519 ---------NKARAID--AGIVLPLMNLLEERN---L--GMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEYIRE- 579 (643)
Q Consensus 519 ---------n~~~lv~--~G~v~~Lv~lL~~~~---~--~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~~- 579 (643)
.+..+.. ..+++.|+.++.... . ...+.++.+|..++.. ++... .. ...++.|...+..
T Consensus 529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIM 606 (960)
T ss_dssp CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHH
T ss_pred ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHH
Confidence 1222211 234444555555431 1 1234555666555431 11111 11 1244555554432
Q ss_pred ----CChHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749 580 ----GTPKNKECATAVLLELGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 580 ----~s~~~~e~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L 637 (643)
.++..+..++.+|..++.. +++.... ....+++.+..++.+........+..++..+
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV 668 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 2455666678888777765 3333332 3345678888877766544555555555444
No 164
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.15 E-value=0.14 Score=51.04 Aligned_cols=187 Identities=18% Similarity=0.143 Sum_probs=120.9
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcccccc---chhhhh-c-cCChHHHHHHhccCChhhHHHHHHHHHHhccCCc---
Q 040749 447 IPAIIEILQSGSTEARENSAAALFSLSMLDE---NKITIG-L-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA--- 518 (643)
Q Consensus 447 i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~k~~i~-~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--- 518 (643)
+| +-+-|.+.++..|..|...|..+..... ...... . ...++.+-..+.+.+..+...++.+|..+...-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 45 5678889999999999998877643211 111111 1 2345566677888899999999999988764221
Q ss_pred -chH--HHHHcCChHHHHHH-hccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749 519 -NKA--RAIDAGIVLPLMNL-LEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE 594 (643)
Q Consensus 519 -n~~--~lv~~G~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~ 594 (643)
.+. ...-..+++.|+.- |.+....++..|+.++..++....... .++..+...+.+.+|.++..++..|..
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~ 165 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYE 165 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 122 22335567777764 677778888888888877754221111 134555666778899999999998887
Q ss_pred HhcC-CHHH--HHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749 595 LGAN-NSSF--ILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 595 L~~~-~~~~--~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~ 640 (643)
+... +... ....+ ..+++.+..++.+.++.+|..|..++..+.++
T Consensus 166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 6542 1111 11111 12456677888999999999999998877654
No 165
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.31 E-value=0.79 Score=44.55 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-----hHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHH
Q 040749 544 VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-----PKNKECATAVLLELGAN-NSSFILAALQYGVYEHLIQ 617 (643)
Q Consensus 544 ~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ 617 (643)
+.+|++.|..+|++++.|..+.+++..-.|..+|...+ ...|-.+++++..|... +++....+++..++|..++
T Consensus 73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 57788999999999999999999999888999998765 34577899999998865 4566777889999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHH
Q 040749 618 LTEGGTSRAQRKANALLQLI 637 (643)
Q Consensus 618 ll~~g~~~~k~~A~~lL~~L 637 (643)
.++.|++-.|--|..++..+
T Consensus 153 ime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHH
Confidence 99999999999999988765
No 166
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=93.97 E-value=0.074 Score=52.09 Aligned_cols=45 Identities=9% Similarity=0.057 Sum_probs=27.5
Q ss_pred cHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 040749 406 IPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAA 467 (643)
Q Consensus 406 i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~ 467 (643)
.+.|..++..++..++..++..| . .+.+..+++.+++++|..++.
T Consensus 100 ~~~L~~ll~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 100 REQLSALMFDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp SGGGGGTTTCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 35677777777888887776632 1 123444455666666666665
No 167
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.96 E-value=0.048 Score=56.01 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=52.4
Q ss_pred ccccccCcccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCcCcccccCCCCccHHHHHHHHH
Q 040749 274 EFLCPITLEIMRDPVII-ASGQT--FERESVQKWFD-SNHRTCPKTRQTLAHLSIAPNYALKNLILQ 336 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~-~cg~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 336 (643)
.+.||+++..|..|+-- .|.|. |+...+..+.. .+.+.||.|++.+...++..+..+..++..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 48999999999999975 79997 88877666554 467889999999999999998888777654
No 168
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.92 E-value=0.02 Score=47.81 Aligned_cols=34 Identities=15% Similarity=0.253 Sum_probs=29.1
Q ss_pred CccccccCccc-ccCcee--cCCCCccchHHHHHHHh
Q 040749 273 HEFLCPITLEI-MRDPVI--IASGQTFERESVQKWFD 306 (643)
Q Consensus 273 ~~f~CpIc~~~-m~dPv~--~~cg~ty~r~~I~~~~~ 306 (643)
++..|+||.+. ..+||. +.|||+||+.|++.|..
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 46789999965 789998 89999999999998544
No 169
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=93.73 E-value=1.7 Score=51.30 Aligned_cols=219 Identities=9% Similarity=0.050 Sum_probs=122.3
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhHHHHHh----cCCcHH----HHHhCCCC---ChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 373 SSKLEVQKEAVRKIRLLSKENPENRILIAD----CGAIPP----LVQLLPYP---DSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~----~g~i~~----Lv~lL~~~---d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
+.+|..+..|+..++.++.........+.. ....+. ++..|.++ ++.++..|+++|+.++..- .+..
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~- 493 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ- 493 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence 567888889999999987432100000000 011222 22233444 7889999999999998642 2222
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc---------chhhhhc--cCChHHHHHHhccCC---h--hhHHH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE---------NKITIGL--SDGIPPLVDLLQNGT---I--RGKKD 505 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~i~~Lv~lL~~~~---~--~~~~~ 505 (643)
-...++.++..|.+.+..++..|+.+|.+++...+ .+..+.. ...++.|+.++.... . .....
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 23467888888888889999999999999886421 2333332 345566666776641 1 12345
Q ss_pred HHHHHHHhccC-CcchHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHHH
Q 040749 506 AVTALFNLSLN-QANKARAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEYI 577 (643)
Q Consensus 506 A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL 577 (643)
+..+|..+... .+....... .+++.|+..+.. .+......++.+|..++.. ++....+ ...+++.+..+|
T Consensus 573 l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL 650 (960)
T 1wa5_C 573 LMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF 650 (960)
T ss_dssp HHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHH
Confidence 56666655421 121111111 134445544432 3445555677777777653 3233222 235677777888
Q ss_pred hcCChHHHHHHHHHHHHHh
Q 040749 578 REGTPKNKECATAVLLELG 596 (643)
Q Consensus 578 ~~~s~~~~e~A~~~L~~L~ 596 (643)
........+.+..++..+.
T Consensus 651 ~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 651 SEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HTTCTTTHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHHHHH
Confidence 7655555666666655443
No 170
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=93.40 E-value=0.96 Score=45.82 Aligned_cols=195 Identities=14% Similarity=0.123 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHH----HHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRIL----IAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES 436 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~----i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~ 436 (643)
+.+..|+..|..-+.+.+..++....++.+.....|-. +.. ...+..|+.-. +++++--++-..|.....++.
T Consensus 78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e~ 155 (341)
T 1upk_A 78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEP 155 (341)
T ss_dssp SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHH
T ss_pred CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhHH
Confidence 56888999999999999999999888888766554322 222 11223333322 356666777788888888888
Q ss_pred hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhc---cCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749 437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGL---SDGIPPLVDLLQNGTIRGKKDAVTALFN 512 (643)
Q Consensus 437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~aL~n 512 (643)
-...+...+.+-.+.+.+..++-++...|..++..|-..+. ....... ...+...-.||.+++--.+..++..|..
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge 235 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE 235 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence 77777788888899999999999999999999888754321 1111111 3467777889999999999999999999
Q ss_pred hccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749 513 LSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHP 558 (643)
Q Consensus 513 Ls~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 558 (643)
|-....|...|.. ..-+..++.+|.+.+..++-+|..++.....+|
T Consensus 236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence 9999888776654 456788899999999999999999998877655
No 171
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.10 E-value=0.081 Score=54.15 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=53.2
Q ss_pred CccccccCcccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCcCcccccCCCCccHHHHHHHHH
Q 040749 273 HEFLCPITLEIMRDPVII-ASGQT--FERESVQKWFD-SNHRTCPKTRQTLAHLSIAPNYALKNLILQ 336 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~-~cg~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~ 336 (643)
-.+.||++...|..|+-- .|.|. |+...+..+.. .+.+.||.|++.+...++..+..+...+..
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 358999999999999975 79987 88877776665 467899999999999999988887777654
No 172
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.78 E-value=0.85 Score=46.01 Aligned_cols=136 Identities=11% Similarity=0.064 Sum_probs=91.7
Q ss_pred ChhhHHHHHHHHHHhccCCcchHHHHHc--CChHHHHHHhccCChhhHHHHHHHHHHHhCChh---hHHHhhcCCcHHHH
Q 040749 499 TIRGKKDAVTALFNLSLNQANKARAIDA--GIVLPLMNLLEERNLGMVDEALSILLLLATHPE---GRHKIGQLSFIETL 573 (643)
Q Consensus 499 ~~~~~~~A~~aL~nLs~~~~n~~~lv~~--G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~---~~~~i~~~g~i~~L 573 (643)
.+..+..+++++.|+-.++..+..+... .+++.+...+.+.+..++..+..++.|++...- ..+. ...++..+
T Consensus 161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l 238 (304)
T 3ebb_A 161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLI 238 (304)
T ss_dssp CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHH
Confidence 4556788999999999888888777652 233444444444677888899999999976211 0011 01134445
Q ss_pred HHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 040749 574 VEYIRE-GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQL 636 (643)
Q Consensus 574 v~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~ 636 (643)
..++.. .+++....++.+|.+|...+++....+...|+-..+-.+... ..+++.+.|..+|..
T Consensus 239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~ 303 (304)
T 3ebb_A 239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL 303 (304)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 555543 467888899999999988777666666667776666666655 477888888887754
No 173
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.64 E-value=1.6 Score=42.16 Aligned_cols=175 Identities=15% Similarity=0.206 Sum_probs=104.7
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC----C-------ChHHHHHHHHHHHHhcC
Q 040749 367 LVEQLSSSK-LEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY----P-------DSKILEHAVTAVLNLSI 433 (643)
Q Consensus 367 Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~----~-------d~~~~~~a~~~L~nLs~ 433 (643)
.++.|.+.. .+.-.+.+..|+.....++ ..-..+ ..+|+..|+.+|.. + +...+..++.+|..+..
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn 83 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 83 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence 455555432 2222234445543333333 333334 46777777776642 1 34667888999999988
Q ss_pred CcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--c-hhhh----------hccCChHHHHHHhccC-
Q 040749 434 DESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--N-KITI----------GLSDGIPPLVDLLQNG- 498 (643)
Q Consensus 434 ~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~~~- 498 (643)
+..+...+. ..+++..|+..|.+..+.++..++.+|..++..++ . ...+ .+..-+..+++.+++.
T Consensus 84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~ 163 (233)
T 2f31_A 84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT 163 (233)
T ss_dssp SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence 887777666 56789999999998899999999998888876543 3 2222 2334667788888743
Q ss_pred ChhhHHHHHHHHHHhccCCcc-------hHHHHHcCChHHHHHHhccCChh
Q 040749 499 TIRGKKDAVTALFNLSLNQAN-------KARAIDAGIVLPLMNLLEERNLG 542 (643)
Q Consensus 499 ~~~~~~~A~~aL~nLs~~~~n-------~~~lv~~G~v~~Lv~lL~~~~~~ 542 (643)
+.+.+..++..+-.+...+++ |..+...|..+.+-++=...++.
T Consensus 164 ~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~ 214 (233)
T 2f31_A 164 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED 214 (233)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence 444554444444445555544 23345566655554443324443
No 174
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=92.62 E-value=0.92 Score=45.77 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=96.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC----cHHHHHhCCC-CChHHHHHHHHHHHHhcCCcch
Q 040749 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGA----IPPLVQLLPY-PDSKILEHAVTAVLNLSIDESN 437 (643)
Q Consensus 363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~----i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~ 437 (643)
.+..+.+.+ +=+.+.+.-++..+|.++. ++.....+.+... +..+...+.. ..+..+--+++++.|+..++.+
T Consensus 104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g 181 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG 181 (304)
T ss_dssp HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence 445555554 2233445566666676663 4555445544322 2233444443 3556688899999999999988
Q ss_pred HHHHHhc--CChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh-ccCChHHHHHHhc-cCChhhHHHHHHHHHHh
Q 040749 438 KRLIAQQ--GAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG-LSDGIPPLVDLLQ-NGTIRGKKDAVTALFNL 513 (643)
Q Consensus 438 k~~i~~~--g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nL 513 (643)
+..+... ..++.+...+.+.+..++..++.+++|++..-......- ....+..+..++. ..+.+...-++.||.+|
T Consensus 182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL 261 (304)
T 3ebb_A 182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL 261 (304)
T ss_dssp HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 8877642 344444555555678899999999999985421111110 1123344444443 34778889999999999
Q ss_pred ccCCcchHHHHH
Q 040749 514 SLNQANKARAID 525 (643)
Q Consensus 514 s~~~~n~~~lv~ 525 (643)
...+.....+.+
T Consensus 262 ~~~~~~~~~lak 273 (304)
T 3ebb_A 262 ISDDSNAVQLAK 273 (304)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhCChhHHHHHH
Confidence 876655555544
No 175
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.47 E-value=0.092 Score=51.16 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=38.8
Q ss_pred ccccccCcccccCceec-CCCCccchHHHHHHHhc-CCCCCCCcCcccccC
Q 040749 274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDS-NHRTCPKTRQTLAHL 322 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~-~~~~cP~~~~~l~~~ 322 (643)
-..|.||.++..--+.- .|++.|...|+.+|+.. +...||.|+...+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 35699999998854443 39999999999999985 356899999876654
No 176
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.38 E-value=0.55 Score=46.35 Aligned_cols=180 Identities=14% Similarity=0.072 Sum_probs=113.5
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH----HhcCCCHHHHHHHHHHHHhccc---cccchh
Q 040749 408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIE----ILQSGSTEARENSAAALFSLSM---LDENKI 480 (643)
Q Consensus 408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~----lL~~~~~e~~~~Aa~~L~~Ls~---~~~~k~ 480 (643)
.+...|-+.|..-+..|+..|...... +...+. ..++.+++ .+.+.+..+...+..+|..+.. ..+++-
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~ 125 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM 125 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344455555777777777776664321 222221 12333333 3335677777777777666531 122222
Q ss_pred hhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749 481 TIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP 558 (643)
Q Consensus 481 ~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~ 558 (643)
.-.+ .-.+|.|+.-+.+....++..+-.++..++. ++.+ .+++.+++-+.+.+...++.++..+..+-...
T Consensus 126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~ 198 (266)
T 2of3_A 126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNA 198 (266)
T ss_dssp CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence 2122 3468999988888888888877777766653 2222 24566777778888999999998888885422
Q ss_pred hhHHHhhcCCcH---HHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 040749 559 EGRHKIGQLSFI---ETLVEYIREGTPKNKECATAVLLELGANNSSF 602 (643)
Q Consensus 559 ~~~~~i~~~g~i---~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~ 602 (643)
|.. ...++ +.+.+++.+.+..+|..|+.++..+....++.
T Consensus 199 -G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 199 -GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp -CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred -CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 111 23467 99999999999999999999998877654443
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.54 E-value=3.8 Score=42.66 Aligned_cols=177 Identities=15% Similarity=0.211 Sum_probs=110.8
Q ss_pred HHHHHHhcCCC-HHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCC-----------CCChHHHHHHHHHHHHh
Q 040749 365 VSLVEQLSSSK-LEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLP-----------YPDSKILEHAVTAVLNL 431 (643)
Q Consensus 365 ~~Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~-----------~~d~~~~~~a~~~L~nL 431 (643)
...+..|.++. .+...+.+..|+.....++ ..-..+. .+|+..|+.+|. ..+...+..++.+|..+
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal 147 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 147 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 34455555542 2222344555554443443 3334444 677888888774 12457788899999999
Q ss_pred cCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--c-hhh----------hhccCChHHHHHHhcc
Q 040749 432 SIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--N-KIT----------IGLSDGIPPLVDLLQN 497 (643)
Q Consensus 432 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~----------i~~~g~i~~Lv~lL~~ 497 (643)
..+..+...+. ...+|..|+..|.+..+.++..+..+|..++..++ + ... .++..-+..++..|++
T Consensus 148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 88887777666 56789999999999999999999999988876553 2 222 2234567888888886
Q ss_pred C-ChhhHHHHHHHHHHhccCCcc-------hHHHHHcCChHHHHHHhcc-CChhh
Q 040749 498 G-TIRGKKDAVTALFNLSLNQAN-------KARAIDAGIVLPLMNLLEE-RNLGM 543 (643)
Q Consensus 498 ~-~~~~~~~A~~aL~nLs~~~~n-------~~~lv~~G~v~~Lv~lL~~-~~~~~ 543 (643)
+ +.+.+..++..+-.+...+++ +..+...|..+.+-. |.. .++.+
T Consensus 228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L 281 (383)
T 3eg5_B 228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM 281 (383)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence 4 555555454444445555443 234556776666655 544 34433
No 178
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=91.30 E-value=0.45 Score=46.47 Aligned_cols=88 Identities=16% Similarity=0.151 Sum_probs=60.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 040749 369 EQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIP 448 (643)
Q Consensus 369 ~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~ 448 (643)
.++.++++.++..|+..+ ....|..++..+++.++..++..| . .+
T Consensus 57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~ 101 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------RE 101 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SG
T ss_pred HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HH
Confidence 345778888888888742 134577888899999999888642 1 24
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHH
Q 040749 449 AIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT 508 (643)
Q Consensus 449 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 508 (643)
.|..++++.++++|..++.. +. .+.|..++++.+..++..++.
T Consensus 102 ~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 102 QLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQ 144 (244)
T ss_dssp GGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHH
Confidence 56777888899999988774 21 123445566677777776665
No 179
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.90 E-value=7.8 Score=45.41 Aligned_cols=172 Identities=15% Similarity=0.056 Sum_probs=96.1
Q ss_pred CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh---c--cCChhhHHHHHHHHHHhccCCcchHHHHHcCChHH
Q 040749 457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL---Q--NGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLP 531 (643)
Q Consensus 457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~ 531 (643)
.++..++.|..++..++..-.... ...++.++.++ . +.++.++..++++|..++..-....... ..+++.
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~ 550 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL 550 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence 467788889999888875322111 13344444443 3 2378889999999998875311111111 124455
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCH-HHHHHH
Q 040749 532 LMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREG--TPKNKECATAVLLELGANNS-SFILAA 606 (643)
Q Consensus 532 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~-~~~~~~ 606 (643)
|+..| + +.+...|+.++.+++. +.+..+.. ...+..+..++..+ +...+..+..++..+...-+ +.....
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~ 625 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY 625 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56666 2 6889999999999994 23333332 24556666777763 46788888888888876432 222221
Q ss_pred HH---CCcHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Q 040749 607 LQ---YGVYEHLIQLTEGG--TSRAQRKANALLQLIS 638 (643)
Q Consensus 607 ~~---~g~i~~L~~ll~~g--~~~~k~~A~~lL~~L~ 638 (643)
.+ .-.+..+..++.+. ++..+..+...|..|.
T Consensus 626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~ 662 (971)
T 2x1g_F 626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS 662 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 11 12333333444443 4444555555555443
No 180
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.00 E-value=11 Score=44.18 Aligned_cols=211 Identities=14% Similarity=0.054 Sum_probs=118.3
Q ss_pred CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHh---c--CCCHHHHHHHHHHHHhccccc-cchhhhhccCChH
Q 040749 416 PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL---Q--SGSTEARENSAAALFSLSMLD-ENKITIGLSDGIP 489 (643)
Q Consensus 416 ~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~ 489 (643)
.+...++.|+.++..++..-.... ...++.++.++ . ..++.++..+++++..++..- .+...+ ..+++
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~ 549 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN 549 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence 467788999999999986422111 12334444433 3 247899999999999987431 111111 24566
Q ss_pred HHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH--cCChHHHHHHhcc--CChhhHHHHHHHHHHHhCC--hhhHHH
Q 040749 490 PLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID--AGIVLPLMNLLEE--RNLGMVDEALSILLLLATH--PEGRHK 563 (643)
Q Consensus 490 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~--~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~--~~~~~~ 563 (643)
.|+..| + +.++..|+.++.+++..- +..+.. ..++..|..++.. .+...+..++.++..++.. ++....
T Consensus 550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~ 624 (971)
T 2x1g_F 550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK 624 (971)
T ss_dssp HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 666666 3 788999999999999432 223322 3445555566655 3456777778888777653 122222
Q ss_pred hhcCCcHHHHHHHH----hcC--ChHHHHHHHHHHHHHhcC-----CH-----------HHHHHHHHCCcHHHHHHHhhc
Q 040749 564 IGQLSFIETLVEYI----REG--TPKNKECATAVLLELGAN-----NS-----------SFILAALQYGVYEHLIQLTEG 621 (643)
Q Consensus 564 i~~~g~i~~Lv~lL----~~~--s~~~~e~A~~~L~~L~~~-----~~-----------~~~~~~~~~g~i~~L~~ll~~ 621 (643)
... ..++.++..+ ... ++..+......|..|+.. .. .... -....+++.+..++..
T Consensus 625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~ 702 (971)
T 2x1g_F 625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEM 702 (971)
T ss_dssp HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHh
Confidence 222 2334444433 222 333444444444444321 10 0001 1124577877777754
Q ss_pred --CCHHHHHHHHHHHHHHHh
Q 040749 622 --GTSRAQRKANALLQLISK 639 (643)
Q Consensus 622 --g~~~~k~~A~~lL~~L~~ 639 (643)
.++.+.+.|..++..+..
T Consensus 703 ~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 703 WVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp TTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 367889999988887654
No 181
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=89.84 E-value=24 Score=41.06 Aligned_cols=218 Identities=13% Similarity=0.050 Sum_probs=127.2
Q ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC------
Q 040749 362 EEIVSLVEQ-LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI------ 433 (643)
Q Consensus 362 ~~i~~Lv~~-L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~------ 433 (643)
..+..+++. ..+++++.+.+|-..|..+-+ +| ++.+.+..+|. +.+..+|..|+.+|.|...
T Consensus 24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 345566655 446788888888888888764 33 34555666665 4478899999999998643
Q ss_pred CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-----CChhhHHHHHH
Q 040749 434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-----GTIRGKKDAVT 508 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~ 508 (643)
.++.+..| ....+..+... .++...++...+.++..+...+... .-++.++.|+.++++ .+......++.
T Consensus 94 ~~~~~~~i-r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 168 (963)
T 2x19_B 94 PTDQYESL-KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALLE 168 (963)
T ss_dssp CGGGHHHH-HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 23344444 22344444442 2246788888888888887553211 125788999998875 24456677777
Q ss_pred HHHHhccC---C---cchHHHHH---cCChHHHHHH----hccCC--hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHH
Q 040749 509 ALFNLSLN---Q---ANKARAID---AGIVLPLMNL----LEERN--LGMVDEALSILLLLATHPEGRHKIGQLSFIETL 573 (643)
Q Consensus 509 aL~nLs~~---~---~n~~~lv~---~G~v~~Lv~l----L~~~~--~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~L 573 (643)
.|..|+.. . ..+...++ ...++.++.+ +.... ..+...++.++........ ........++.+
T Consensus 169 iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~--~~~~~~~ll~~l 246 (963)
T 2x19_B 169 LLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEV--PLQDCEALIQAA 246 (963)
T ss_dssp HHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSC--CGGGTHHHHHHH
T ss_pred HHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCC--CcccchHHHHHH
Confidence 77777631 1 11111111 1234444444 33322 1366777777755443111 011113345555
Q ss_pred HHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 574 VEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 574 v~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
.+.+ .++..++.|+.+|..+...
T Consensus 247 ~~~l--~~~~~~~~a~~~l~~i~~~ 269 (963)
T 2x19_B 247 FAAL--QDSELFDSSVEAIVNAISQ 269 (963)
T ss_dssp HHHT--TSTTTHHHHHHHHHHHHTC
T ss_pred HHHh--CCchHHHHHHHHHHHHHcc
Confidence 5555 3578899999999998864
No 182
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.34 E-value=6.3 Score=41.03 Aligned_cols=177 Identities=16% Similarity=0.225 Sum_probs=105.9
Q ss_pred HHHHHhcCCCHHH-HHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC-----------CChHHHHHHHHHHHHhc
Q 040749 366 SLVEQLSSSKLEV-QKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY-----------PDSKILEHAVTAVLNLS 432 (643)
Q Consensus 366 ~Lv~~L~s~~~~~-~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-----------~d~~~~~~a~~~L~nLs 432 (643)
..|+.|.+..... -.+.+..|+.....++ ..-..+. .+|+..|+.+|.. .+...+..++.+|..+.
T Consensus 8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 3455555432221 1234445544333333 2233343 5677777776642 14567788899999998
Q ss_pred CCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--c-hhhh----------hccCChHHHHHHhccC
Q 040749 433 IDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--N-KITI----------GLSDGIPPLVDLLQNG 498 (643)
Q Consensus 433 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~~~ 498 (643)
.+..+...+. ..+++..|+..|.+..+.++..++.+|..++..++ . ...+ .+..-+..+|..+.++
T Consensus 87 N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~ 166 (386)
T 2bnx_A 87 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG 166 (386)
T ss_dssp SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence 8877766666 56789999999988889999999988888876543 2 2221 2344677788888744
Q ss_pred -ChhhHHHHHHHHHHhccCCcc-------hHHHHHcCChHHHHHHhccCChhh
Q 040749 499 -TIRGKKDAVTALFNLSLNQAN-------KARAIDAGIVLPLMNLLEERNLGM 543 (643)
Q Consensus 499 -~~~~~~~A~~aL~nLs~~~~n-------~~~lv~~G~v~~Lv~lL~~~~~~~ 543 (643)
+.+.+..++..+-.|...+++ |..+...|..+.+-.+=...++.+
T Consensus 167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence 445554444444445555554 334566776666554433344443
No 183
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=89.28 E-value=1.5 Score=47.48 Aligned_cols=186 Identities=15% Similarity=0.119 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC
Q 040749 377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS 456 (643)
Q Consensus 377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~ 456 (643)
.+|..|+..|..+ .+-+.. ..++..|+..+..+..+++..++-.|..+. +--.. -.++++.++.-|.+
T Consensus 243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~--DLL~~---Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK--EFVED---KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG--GGCCC---HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH--HHHHH---HHHHHHHHHhhcCC
Confidence 4677788888777 544432 334555555567778999999999998881 10011 25568888888899
Q ss_pred CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-Ch-hhHHHHHHHHHHhccCCcchHHHHHcCChHHHHH
Q 040749 457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TI-RGKKDAVTALFNLSLNQANKARAIDAGIVLPLMN 534 (643)
Q Consensus 457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~-~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~ 534 (643)
.+.+++..||.+|.-++ .++. + ...+..+.+.|.+- +. .........|..|+..+.+. ......||.|..
T Consensus 311 ~DDDVRAVAAetLiPIA-~p~~---l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~P 382 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP-ITDS---L--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFP 382 (800)
T ss_dssp SSHHHHHHHHHHHTTSC-CSST---H--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGG
T ss_pred cccHHHHHHHHHhhhhc-chhh---H--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHh
Confidence 99999999999999887 1110 0 23344455555442 22 23344455666666555321 112478899999
Q ss_pred HhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHH-HHhcCChHHHHHHHHHH
Q 040749 535 LLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVE-YIREGTPKNKECATAVL 592 (643)
Q Consensus 535 lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~-lL~~~s~~~~e~A~~~L 592 (643)
+|.++-.+++..++.+|..+. ...++..+.+ +|-..++.+++.+..+.
T Consensus 383 FLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 383 CFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred hhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999998999999999987776 1123444433 44456677777776665
No 184
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=89.12 E-value=7.9 Score=41.12 Aligned_cols=131 Identities=17% Similarity=0.162 Sum_probs=92.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i 441 (643)
.....++.. .+++...++-|+..|....++-|+.... +|..++.+...+|..+|..|+..|-.+|.+ ++-..+
T Consensus 29 ~~y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki 101 (507)
T 3u0r_A 29 DAYQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV 101 (507)
T ss_dssp HHHHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH
Confidence 344455553 3457888999999999999888876544 567899999999999999999999999988 554333
Q ss_pred HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHH
Q 040749 442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF 511 (643)
Q Consensus 442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~ 511 (643)
.+.|+++|...++.-....-.+|..|-..+. .+.+..|...+.++++.++..++.-|.
T Consensus 102 -----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 102 -----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp -----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 5778999998875544444445544432211 245666666666677777777776664
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=87.73 E-value=9.5 Score=44.57 Aligned_cols=173 Identities=15% Similarity=0.099 Sum_probs=102.8
Q ss_pred cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh---ccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHH
Q 040749 455 QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL---QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLP 531 (643)
Q Consensus 455 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~ 531 (643)
.+.++..++.++.++..++..-.. .....++.++..+ .++++.++..++++|..++..-....... ..+++.
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 445788899999999988754211 0123445555554 33467788899999988875311112222 467888
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCH-HHHHHH
Q 040749 532 LMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREG--TPKNKECATAVLLELGANNS-SFILAA 606 (643)
Q Consensus 532 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~-~~~~~~ 606 (643)
|+..|.+ +.++..|+.+|.+++. +.+..+.. ...+..+..++..+ +...+..+..++..+....+ +.....
T Consensus 534 l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 8888854 7899999999999985 23333322 13344455566642 46788888888888876543 333332
Q ss_pred HHCCcHHHHHHH----hhcC-CHHHHHHHHHHHHHH
Q 040749 607 LQYGVYEHLIQL----TEGG-TSRAQRKANALLQLI 637 (643)
Q Consensus 607 ~~~g~i~~L~~l----l~~g-~~~~k~~A~~lL~~L 637 (643)
.+ .+++.+... ..+. ++..+.....++..|
T Consensus 610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l 644 (963)
T 2x19_B 610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL 644 (963)
T ss_dssp HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 22 234444333 3333 566665544444443
No 186
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.32 E-value=2.9 Score=44.37 Aligned_cols=120 Identities=15% Similarity=0.169 Sum_probs=93.7
Q ss_pred cCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHH
Q 040749 497 NGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVE 575 (643)
Q Consensus 497 ~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~ 575 (643)
.|+...++.|+..|..... .++-... ++..++.+..+.+..++..|+.-|..+|.. +... .++..|++
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~Q 107 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQ 107 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHH
Confidence 5678889999888887654 4444444 456789999889999999999999999987 3332 45678899
Q ss_pred HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 040749 576 YIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQ 635 (643)
Q Consensus 576 lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~ 635 (643)
+|.+.++......-..|..+...++. +.+..|+.-+.+|++.+|+++...|+
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence 99988888888888888888887774 46777777777788889988877664
No 187
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=85.24 E-value=20 Score=36.30 Aligned_cols=156 Identities=17% Similarity=0.086 Sum_probs=117.2
Q ss_pred hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc-chHHHHH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 040749 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA-NKARAID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLATH 557 (643)
Q Consensus 482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~lv~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~ 557 (643)
+...+.+..|+..|..=+.+.++++.....++..... ++...++ ..-...|.-++.. .++++.-.+=.+|.....+
T Consensus 74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence 3456888899999988899999999999888876433 2222221 1123333334433 5677778888888888889
Q ss_pred hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHHHHhhcCCHHHHHHHHHHH
Q 040749 558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYG---VYEHLIQLTEGGTSRAQRKANALL 634 (643)
Q Consensus 558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~lL 634 (643)
+.....+...+.+-.+.+.+..++=.+-.-|...+..|-......+...+..+ .+...-.++.+++--+|+.+..+|
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL 233 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL 233 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence 88888888888888999999888878888888888887777766666666533 567777899999999999999999
Q ss_pred HHH
Q 040749 635 QLI 637 (643)
Q Consensus 635 ~~L 637 (643)
..+
T Consensus 234 gel 236 (341)
T 1upk_A 234 GEL 236 (341)
T ss_dssp HHH
T ss_pred HHH
Confidence 855
No 188
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=83.79 E-value=9.6 Score=39.59 Aligned_cols=143 Identities=15% Similarity=0.227 Sum_probs=93.3
Q ss_pred cCChHHHHHHhcc-----------CChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHH
Q 040749 485 SDGIPPLVDLLQN-----------GTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILL 552 (643)
Q Consensus 485 ~g~i~~Lv~lL~~-----------~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~ 552 (643)
.+++..|+.+|.. .+......++.||..|..+..+...++. ...+..|+..|.+..+.++..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 3455666666531 1235667788899988877777777666 678899999998888999999999999
Q ss_pred HHhCChh--h-HHHhhc----------CCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH--HH----HHHHHHCCcH
Q 040749 553 LLATHPE--G-RHKIGQ----------LSFIETLVEYIRE-GTPKNKECATAVLLELGANNS--SF----ILAALQYGVY 612 (643)
Q Consensus 553 ~La~~~~--~-~~~i~~----------~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~--~~----~~~~~~~g~i 612 (643)
.+|..++ | ...+.+ ..-...++..+.. .+...+..++..+-.+..+.+ .. +..+...|..
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 267 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 267 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence 9998654 3 544433 2336667777775 345556666666656665533 22 2334467777
Q ss_pred HHHHHHhhcCCHHHH
Q 040749 613 EHLIQLTEGGTSRAQ 627 (643)
Q Consensus 613 ~~L~~ll~~g~~~~k 627 (643)
+.+-.+-..+++...
T Consensus 268 ~il~~lr~~~~~~L~ 282 (383)
T 3eg5_B 268 QVLQELREIENEDMK 282 (383)
T ss_dssp HHHHHHTTSCCHHHH
T ss_pred HHHHHHhcCCChhHH
Confidence 766665444455443
No 189
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=83.66 E-value=6.8 Score=37.62 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhCChh--h-HHHhhc---------
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLATHPE--G-RHKIGQ--------- 566 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~-~~~i~~--------- 566 (643)
......++.+|..|..+..+...++. .+++..|+..|.++...++..++.+|..+|..++ | ...+.+
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~ 147 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 147 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence 34566788899988877777777666 6788888888988888999999999999988654 6 544433
Q ss_pred -CCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH--HH----HHHHHHCCcHHHHHHHhhcCCHHHHHHHH
Q 040749 567 -LSFIETLVEYIRE-GTPKNKECATAVLLELGANNS--SF----ILAALQYGVYEHLIQLTEGGTSRAQRKAN 631 (643)
Q Consensus 567 -~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~--~~----~~~~~~~g~i~~L~~ll~~g~~~~k~~A~ 631 (643)
..-...+++.+.. .+...+..++..+-.+..+.+ .. +..+...|..+.|-.+-..+++.......
T Consensus 148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~ 220 (233)
T 2f31_A 148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC 220 (233)
T ss_dssp TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence 2234556666653 334555555555555655433 22 23345677777776666666776655443
No 190
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=83.45 E-value=1.7 Score=34.54 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=38.6
Q ss_pred ccccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 274 EFLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.-.|.||.+-.- +|.+. .|+...||.|.+--.++++..||.|+.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence 357999998743 45554 4888999999998888999999999888764
No 191
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=83.12 E-value=14 Score=43.72 Aligned_cols=221 Identities=16% Similarity=0.125 Sum_probs=132.2
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC------
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI------ 433 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~------ 433 (643)
-..+..+++.+.+++.+.|.+|-..|..+.+ ++ ++...+..+|. +.+..+|..|+.+|.|...
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l 84 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence 3456666766667777777788888877753 33 35556666664 4578899999999988643
Q ss_pred CcchHHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHH
Q 040749 434 DESNKRLIAQQGAIPAIIEILQSG-----STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT 508 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 508 (643)
.++.+..| ....+..+...-..+ +..++...+.++..++..+... .-++.++.|+.+++ .+...+..++.
T Consensus 85 ~~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~ 159 (1049)
T 3m1i_C 85 PNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMI 159 (1049)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHH
Confidence 23334444 222333333322111 3566777788888776543210 12578899999986 45555677777
Q ss_pred HHHHhccC-----Cc----ch-----HHHHH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHH
Q 040749 509 ALFNLSLN-----QA----NK-----ARAID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIE 571 (643)
Q Consensus 509 aL~nLs~~-----~~----n~-----~~lv~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~ 571 (643)
+|..|+.. .+ .+ ..+.. ..++..+...+.. .+..+...++.++.+....-+. ..+.+...++
T Consensus 160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~ 238 (1049)
T 3m1i_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILE 238 (1049)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHH
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHH
Confidence 77777621 11 11 11222 1122333444433 4567888899998887664332 2244456777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749 572 TLVEYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 572 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
.+.+.+. .++..+..|+.+|..+...
T Consensus 239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 239 LLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 7663332 3688899999999888765
No 192
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=82.72 E-value=19 Score=36.48 Aligned_cols=110 Identities=16% Similarity=0.198 Sum_probs=84.4
Q ss_pred HHHhcCCcch-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc-cCChhhHHH
Q 040749 428 VLNLSIDESN-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ-NGTIRGKKD 505 (643)
Q Consensus 428 L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~ 505 (643)
|+||-.++.+ -.-++...++..+..+++-++.++.......|...|...... .+--...+|.++..+. ++++++.+.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccCCCcceEEe
Confidence 5566666554 778889999999999999999888888888888876433221 1112567888888885 678899999
Q ss_pred HHHHHHHhccCCcc-hHHHHHcCChHHHHHHhcc
Q 040749 506 AVTALFNLSLNQAN-KARAIDAGIVLPLMNLLEE 538 (643)
Q Consensus 506 A~~aL~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~ 538 (643)
..+.|.|...+... +...+..|+++.|-..+..
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 99999999877655 4557889999999888754
No 193
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=81.97 E-value=32 Score=34.89 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=87.0
Q ss_pred HHHhccCCcch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHH
Q 040749 510 LFNLSLNQANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKEC 587 (643)
Q Consensus 510 L~nLs~~~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~ 587 (643)
|.||..++.|. .-++++.+|..+...+..++.++....+..|...+....-...=. ...+|-++..+. ++.+++.-.
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence 45666666664 458999999999999999999999999999998876432221111 356788888776 567888889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC
Q 040749 588 ATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG 622 (643)
Q Consensus 588 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g 622 (643)
..+.|.++..+..-....++..|+++.|...+..-
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 99999999988877777788999999999887654
No 194
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=81.82 E-value=48 Score=38.93 Aligned_cols=220 Identities=12% Similarity=0.083 Sum_probs=129.2
Q ss_pred HHHHHHH-HhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC---ChHHHHHHHHHHHHhcC--Cc
Q 040749 363 EIVSLVE-QLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP---DSKILEHAVTAVLNLSI--DE 435 (643)
Q Consensus 363 ~i~~Lv~-~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---d~~~~~~a~~~L~nLs~--~~ 435 (643)
.+...+. .+.. .+++.|.+|-..|..+-+ +++ +......+|.++ +..++-.|+.+|.+... .+
T Consensus 7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~ 76 (980)
T 3ibv_A 7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN 76 (980)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence 3444553 3432 368888888888877764 343 334455666553 68888888888876543 33
Q ss_pred c----hHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-hhHHHHHHH
Q 040749 436 S----NKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTA 509 (643)
Q Consensus 436 ~----~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~a 509 (643)
+ .+..+ ....+..+...-. .+...++...+.+|..+...+... .-++.++.|+.++..++. .+....+++
T Consensus 77 e~~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~Lri 152 (980)
T 3ibv_A 77 ESNLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKV 152 (980)
T ss_dssp TTSHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hhhHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHH
Confidence 3 33333 2223444433110 234667788888888776432110 225788888888876544 344445555
Q ss_pred HHHhccC----C--c-----chH----HHHHcCC----hHHHHHHhcc----CChhhHHHHHHHHHHHhCChhhHHHhhc
Q 040749 510 LFNLSLN----Q--A-----NKA----RAIDAGI----VLPLMNLLEE----RNLGMVDEALSILLLLATHPEGRHKIGQ 566 (643)
Q Consensus 510 L~nLs~~----~--~-----n~~----~lv~~G~----v~~Lv~lL~~----~~~~~~~~Al~~L~~La~~~~~~~~i~~ 566 (643)
|..|+.. . . .|. ....... ++....+|.. .++.++..++.+|......-+. ..+..
T Consensus 153 L~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~ 231 (980)
T 3ibv_A 153 LLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVN 231 (980)
T ss_dssp HHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHC
T ss_pred HHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhhc
Confidence 5544321 0 0 111 1111121 3334444433 5677888899999888775333 34455
Q ss_pred CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 567 LSFIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
...++.+..++.. +..+..|+.+|..+....
T Consensus 232 ~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~ 262 (980)
T 3ibv_A 232 EPCMNLLYSFLQI--EELRCAACETMTEIVNKK 262 (980)
T ss_dssp HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence 6778888887754 889999999999987653
No 195
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=79.56 E-value=5.4 Score=47.20 Aligned_cols=141 Identities=10% Similarity=0.013 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC---Ch--HHHHHHHHHHHHhcCC-cchHHHHHhcCCh
Q 040749 374 SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP---DS--KILEHAVTAVLNLSID-ESNKRLIAQQGAI 447 (643)
Q Consensus 374 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---d~--~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i 447 (643)
.+|..+..++.+++.++..-.+....-.-..++|.|+.++.+. |+ .++..++++|+..+.- ..+...+ ...+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 5899999999999999854332212111123677888877531 23 3445667888776541 1111111 2234
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc------cCChHHHHHHhc----cCChhhHHHHHHHHHHhccCC
Q 040749 448 PAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL------SDGIPPLVDLLQ----NGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 448 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~------~g~i~~Lv~lL~----~~~~~~~~~A~~aL~nLs~~~ 517 (643)
..|+..+...++.++..|++++.+|+.. ++..+.. ...++.++..+. .-+......+..++..+....
T Consensus 543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~ 620 (1023)
T 4hat_C 543 LKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1023)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 4455555556788999999999999853 4444431 123454444332 235555666777777776654
Q ss_pred c
Q 040749 518 A 518 (643)
Q Consensus 518 ~ 518 (643)
+
T Consensus 621 ~ 621 (1023)
T 4hat_C 621 R 621 (1023)
T ss_dssp C
T ss_pred C
Confidence 4
No 196
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=79.19 E-value=52 Score=38.64 Aligned_cols=205 Identities=12% Similarity=0.002 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHHhccccCCCCCCCCcchhchhhHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhhccC-ch----hHH
Q 040749 327 NYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSS---KLEVQKEAVRKIRLLSKEN-PE----NRI 398 (643)
Q Consensus 327 n~~l~~~i~~~~~~~~~~~p~~~~~~~~~~s~~~~~~i~~Lv~~L~s~---~~~~~~~A~~~L~~L~~~~-~~----~r~ 398 (643)
+...|..+.+|+++-... .++.......|.+. +..+|.-|+..|.+..+.- ++ .+.
T Consensus 21 d~~~r~~A~~~L~~~q~s----------------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~ 84 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS----------------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ 84 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS----------------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC----------------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 567777888888753321 13566666777653 6888888888888766522 22 333
Q ss_pred HHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHhcCCCH-HHHHHHHHHHHhccc
Q 040749 399 LIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDE--SNKRLIAQQGAIPAIIEILQSGST-EARENSAAALFSLSM 474 (643)
Q Consensus 399 ~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~--~~k~~i~~~g~i~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~ 474 (643)
.+. ...+..+.+.-. ....-++.....+|..+...+ .. ..+.++.++.++.+++. ........+|..++.
T Consensus 85 ~lr-~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~-----Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 85 MIR-DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSN-----WNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHH-HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCccc-----CchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 332 234444444111 234567777777777776432 21 34567777777765433 344445555554432
Q ss_pred c--c-c--------c-----hhhhhcc---CChHHHHHHhcc----CChhhHHHHHHHHHHhccCCcchHHHHHcCChHH
Q 040749 475 L--D-E--------N-----KITIGLS---DGIPPLVDLLQN----GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLP 531 (643)
Q Consensus 475 ~--~-~--------~-----k~~i~~~---g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~ 531 (643)
. + . . |..+.+. ..++....+|.. .++.....++.+|......- ....++..+.++.
T Consensus 159 Ev~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~ 237 (980)
T 3ibv_A 159 EIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNL 237 (980)
T ss_dssp HHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHH
T ss_pred HHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHH
Confidence 1 0 0 0 1222211 113444444433 56777778888887765532 2344556677777
Q ss_pred HHHHhccCChhhHHHHHHHHHHHhC
Q 040749 532 LMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 532 Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
+..+|. ++.+++.|+.+|..+.+
T Consensus 238 l~~~L~--~~~~r~~A~ecL~ei~~ 260 (980)
T 3ibv_A 238 LYSFLQ--IEELRCAACETMTEIVN 260 (980)
T ss_dssp HHHHTT--SHHHHHHHHHHHHHHHH
T ss_pred HHHHcC--ChHHHHHHHHHHHHHHH
Confidence 777775 47889999999988866
No 197
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=78.92 E-value=10 Score=33.55 Aligned_cols=74 Identities=9% Similarity=0.132 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCC------CChHHHHHHHHHHHHhc
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPY------PDSKILEHAVTAVLNLS 432 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~------~d~~~~~~a~~~L~nLs 432 (643)
...++..+.+.|++.++.+|..|+..|-.+.++ ++.....++...++..|+++++. .+..++..++..+...+
T Consensus 36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999976 45677788888899999998874 37889999999888876
Q ss_pred C
Q 040749 433 I 433 (643)
Q Consensus 433 ~ 433 (643)
.
T Consensus 116 ~ 116 (148)
T 1mhq_A 116 V 116 (148)
T ss_dssp H
T ss_pred H
Confidence 4
No 198
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=78.85 E-value=30 Score=40.89 Aligned_cols=219 Identities=17% Similarity=0.159 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC------
Q 040749 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI------ 433 (643)
Q Consensus 361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~------ 433 (643)
-..+..++..+.+++.+.+.+|-..|..+-+ +++ +...+..+|. +.++.++..|+.+|.+...
T Consensus 15 v~~Le~av~~ly~p~~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L 84 (1023)
T 4hat_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NPD---------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1023)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-CTT---------GGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHc-Ccc---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 4567778887777777777778777777653 332 4455555554 4478899999999987643
Q ss_pred CcchHHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHH
Q 040749 434 DESNKRLIAQQGAIPAIIEILQSG-----STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT 508 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~ 508 (643)
.++.+..+ ....+..+...-.++ ..-++...+.++..+...+... .-++.++.++.++.++ .......+.
T Consensus 85 ~~e~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~---~Wp~~l~dL~~~l~~~-~~~~~~~L~ 159 (1023)
T 4hat_C 85 PNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSSSS-VNVCENNMI 159 (1023)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHTTTC-HHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChh---hchHHHHHHHHHhcCC-HHHHHHHHH
Confidence 23334433 333455555433222 2445556677777776433110 1267888899888653 445566666
Q ss_pred HHHHhccC------C---cchHHH-----HH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHH
Q 040749 509 ALFNLSLN------Q---ANKARA-----ID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIE 571 (643)
Q Consensus 509 aL~nLs~~------~---~n~~~l-----v~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~ 571 (643)
.|..|+.. . ..|..- .. ..+++.+...|.. .++.+...++.++....+.-+ -..+.+.+.++
T Consensus 160 iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~-i~~i~~~~ll~ 238 (1023)
T 4hat_C 160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP-YRYIYETNILE 238 (1023)
T ss_dssp HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC-THHHHSSSHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC-HHHhcchhHHH
Confidence 66665421 1 112211 11 1233334444433 566778888999988877533 23456678899
Q ss_pred HHH-HHHhcCChHHHHHHHHHHHHHhc
Q 040749 572 TLV-EYIREGTPKNKECATAVLLELGA 597 (643)
Q Consensus 572 ~Lv-~lL~~~s~~~~e~A~~~L~~L~~ 597 (643)
.+. .++. ++..+..|+.+|..+..
T Consensus 239 ~l~~~~L~--~~~~r~~A~ecL~eIv~ 263 (1023)
T 4hat_C 239 LLSTKFMT--SPDTRAITLKCLTEVSN 263 (1023)
T ss_dssp HHHTHHHH--SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHc
Confidence 998 8875 58899999999999986
No 199
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=78.44 E-value=17 Score=34.93 Aligned_cols=142 Identities=12% Similarity=0.041 Sum_probs=94.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHH-HhccCChhhHHHHHHHHHHhcc-CCcchHHHHH
Q 040749 448 PAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVD-LLQNGTIRGKKDAVTALFNLSL-NQANKARAID 525 (643)
Q Consensus 448 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~ 525 (643)
+....+.+++..++|..|+.+|..+ .. ....++.+.. +-.+.+.++++.++.++..++. ....+
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~--------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SK--------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TT--------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cC--------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 3444556677789999999988777 21 1234555555 4445688999999999998874 22221
Q ss_pred cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcC-CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHH
Q 040749 526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQL-SFIETLVEYIREGTPKNKECATAVLLELGANNSSFIL 604 (643)
Q Consensus 526 ~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~-g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~ 604 (643)
.++.+.....+++..++..|...+.--+..+. ...+. -+++.|-.+..+.+.-+|....+.|..++..+|+.+.
T Consensus 140 --~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~---~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~ 214 (240)
T 3l9t_A 140 --ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY---FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVK 214 (240)
T ss_dssp --THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --HHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHH
Confidence 56777888888888888887766543332211 01111 2344444455567788999999999999999998877
Q ss_pred HHHH
Q 040749 605 AALQ 608 (643)
Q Consensus 605 ~~~~ 608 (643)
..++
T Consensus 215 ~~~~ 218 (240)
T 3l9t_A 215 IELK 218 (240)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 200
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=78.36 E-value=67 Score=38.00 Aligned_cols=199 Identities=18% Similarity=0.144 Sum_probs=107.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHH----HhcC---CcHHHHHhCCCCChHHHHHHHHHH---HHh
Q 040749 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILI----ADCG---AIPPLVQLLPYPDSKILEHAVTAV---LNL 431 (643)
Q Consensus 362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i----~~~g---~i~~Lv~lL~~~d~~~~~~a~~~L---~nL 431 (643)
..+-.|++.|..-+.+.-.+....+. ..+..|..+ ...| ++..+..++.++.....+ |+.+| .++
T Consensus 311 ~~f~~Lv~~lR~~~~e~L~~l~~~~~----~~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~e-a~~~l~~~~~~ 385 (1056)
T 1lsh_A 311 AKFLRLTAFLRNVDAGVLQSIWHKLH----QQKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAE-ATQIVASTLSN 385 (1056)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHT----TSHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh----ccHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHH-HHHHHHHhhcc
Confidence 45666778888776655444443332 223344433 3345 344455555555433323 33333 222
Q ss_pred cCCcchHHHHHhcCChHHHHHHhcC----CCHHHHHHHHHHHHhccc----cccchhhhhccCChHHHHHHh----ccCC
Q 040749 432 SIDESNKRLIAQQGAIPAIIEILQS----GSTEARENSAAALFSLSM----LDENKITIGLSDGIPPLVDLL----QNGT 499 (643)
Q Consensus 432 s~~~~~k~~i~~~g~i~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL----~~~~ 499 (643)
. ..+.. .+..+..++.+ .++.++..+.-++.+|.. .... .....++.+.+.+ ..++
T Consensus 386 ~--~Pt~e------~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~~~ 453 (1056)
T 1lsh_A 386 Q--QATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDRAK 453 (1056)
T ss_dssp C--CCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHTTC
T ss_pred C--CCCHH------HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhcCC
Confidence 2 12222 23445555654 356666666666666542 2111 1123355555554 4566
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHH
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKIGQLSFIET 572 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~ 572 (643)
..-+..++.+|.|+-.. ..++.|.+++.. ....++..|+.+|..++.... ..+-+.
T Consensus 454 ~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p-------~~v~~i 516 (1056)
T 1lsh_A 454 EEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP-------RKVQEI 516 (1056)
T ss_dssp HHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH-------HHHHHH
T ss_pred hHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch-------HHHHHH
Confidence 77788899999999742 246667777642 123566778888888864310 123345
Q ss_pred HHHHHhc--CChHHHHHHHHHHHH
Q 040749 573 LVEYIRE--GTPKNKECATAVLLE 594 (643)
Q Consensus 573 Lv~lL~~--~s~~~~e~A~~~L~~ 594 (643)
++.+..+ ..+++|..|+.+|..
T Consensus 517 l~~i~~n~~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 517 VLPIFLNVAIKSELRIRSCIVFFE 540 (1056)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHH
Confidence 6677743 457778877777753
No 201
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=77.99 E-value=16 Score=37.92 Aligned_cols=130 Identities=14% Similarity=0.175 Sum_probs=85.7
Q ss_pred hhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhCChh--h-HHHhhc---------
Q 040749 500 IRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLATHPE--G-RHKIGQ--------- 566 (643)
Q Consensus 500 ~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~-~~~i~~--------- 566 (643)
......++.||..|..+..+...++. .+++..|+..|..+.+.++..++.+|..+|..++ | ...+.+
T Consensus 72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~ 151 (386)
T 2bnx_A 72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD 151 (386)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence 34567788899988877777776665 6788888888888888889999999999988654 5 444332
Q ss_pred -CCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH--HH----HHHHHHCCcHHHHHHHhhcCCHHHHHH
Q 040749 567 -LSFIETLVEYIRE-GTPKNKECATAVLLELGANNS--SF----ILAALQYGVYEHLIQLTEGGTSRAQRK 629 (643)
Q Consensus 567 -~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~--~~----~~~~~~~g~i~~L~~ll~~g~~~~k~~ 629 (643)
..-...+++.+.. .+...+..++..+-.+..+.+ .. +..+...|..+.|-.+-..+++.....
T Consensus 152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 2345567777764 344556556665555665543 22 334456777777666655566655433
No 202
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=77.26 E-value=43 Score=39.70 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=136.3
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcC-----
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSI----- 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~----- 433 (643)
+-..+..++..+.+++.+.+.+|-..|..+- .+++. ...+..+|.+ .++.++-.|+.+|.+...
T Consensus 26 Dv~~Le~lv~~ly~p~~~~r~qA~~~L~q~q-~sp~a---------w~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~ 95 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHGEGAQQRMAQEVLTHLK-EHPDA---------WTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI 95 (1073)
T ss_dssp SHHHHHHHHHTTTCSSHHHHHHHHHHHHTSS-CCSCH---------HHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-cCchH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 3456778888888888887778888887665 44443 3444455544 478999999999988654
Q ss_pred -CcchHHHHHhcCChHHHHHHhcC-----CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHH
Q 040749 434 -DESNKRLIAQQGAIPAIIEILQS-----GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV 507 (643)
Q Consensus 434 -~~~~k~~i~~~g~i~~Lv~lL~~-----~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~ 507 (643)
.++.+..+ ....+..+...-.+ .++..+...+.++..+...+... .-+..++-++.++.. ++......+
T Consensus 96 L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~---~Wp~fi~dLv~~~~~-~~~~~~~~L 170 (1073)
T 3gjx_A 96 LPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK---HWPTFISDIVGASRT-SESLCQNNM 170 (1073)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHH-CHHHHHHHH
T ss_pred CCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh---hccHHHHHHHHHhCC-CHHHHHHHH
Confidence 22334444 33345555554332 23555666777777776432110 125678888888764 345566677
Q ss_pred HHHHHhccC--C-------cchHH----HHHcCChHHHHHHhc----c-CChhhHHHHHHHHHHHhCChhhHHHhhcCCc
Q 040749 508 TALFNLSLN--Q-------ANKAR----AIDAGIVLPLMNLLE----E-RNLGMVDEALSILLLLATHPEGRHKIGQLSF 569 (643)
Q Consensus 508 ~aL~nLs~~--~-------~n~~~----lv~~G~v~~Lv~lL~----~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~ 569 (643)
..|..|+.. + ..|.. .+.. -++.++.++. . .++.+...++.+|..+.+.-+. ..+.+.+.
T Consensus 171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i-~~i~~~~l 248 (1073)
T 3gjx_A 171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPL-GYIFETKL 248 (1073)
T ss_dssp HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSH
T ss_pred HHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH-HHhccchH
Confidence 777777632 1 11111 1222 2555555543 2 5677888899999999886433 34667777
Q ss_pred HHHHH-HHHhcCChHHHHHHHHHHHHHhcC
Q 040749 570 IETLV-EYIREGTPKNKECATAVLLELGAN 598 (643)
Q Consensus 570 i~~Lv-~lL~~~s~~~~e~A~~~L~~L~~~ 598 (643)
++.++ .++ .++..+..|+.+|..+...
T Consensus 249 l~~L~~~~L--~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 249 ISTLIYKFL--NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence 88774 554 5688999999999998864
No 203
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.07 E-value=9.9 Score=34.31 Aligned_cols=74 Identities=8% Similarity=0.093 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~ 433 (643)
.+.++..+.+.|++.++.+|..|+..|-.+.++ ....+..++...++..|++++.. .++.++..++..+...+.
T Consensus 50 ~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 50 AKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999976 45566677777788888887765 578999999888877663
No 204
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=73.61 E-value=12 Score=34.08 Aligned_cols=74 Identities=8% Similarity=0.086 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCC------CChHHHHHHHHHHHHhc
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPY------PDSKILEHAVTAVLNLS 432 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~------~d~~~~~~a~~~L~nLs 432 (643)
.+.++..+.+.|++.++.+|..|+..|-.+.++. ...+..++...++..|+++++. .+..++..++..+...+
T Consensus 48 ~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 48 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999763 5567778888888999998863 36789999999988876
Q ss_pred C
Q 040749 433 I 433 (643)
Q Consensus 433 ~ 433 (643)
.
T Consensus 128 ~ 128 (171)
T 1juq_A 128 M 128 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 205
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=73.04 E-value=55 Score=39.33 Aligned_cols=218 Identities=13% Similarity=0.078 Sum_probs=121.2
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC--CCCChHHHHHHHHHHHHhcC------
Q 040749 364 IVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL--PYPDSKILEHAVTAVLNLSI------ 433 (643)
Q Consensus 364 i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL--~~~d~~~~~~a~~~L~nLs~------ 433 (643)
+..++..+.++ +.+.|.+|-..|..+.+. ++ +...+...| .+.+..++..|+.+|.|...
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44445444444 666788888888777533 22 333333333 34578899999999988642
Q ss_pred CcchHHHHHhcCChHHHHHHhcC---CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHH
Q 040749 434 DESNKRLIAQQGAIPAIIEILQS---GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTAL 510 (643)
Q Consensus 434 ~~~~k~~i~~~g~i~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL 510 (643)
.++.+..| ....+..+...-.. ....++...+.++..+...+... .-++.++.|+.++.+ +...+..++.+|
T Consensus 83 ~~e~k~~I-r~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~iL 157 (1204)
T 3a6p_A 83 SRLEKVYL-KNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFIL 157 (1204)
T ss_dssp CHHHHHHH-HHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 23344444 32334443332111 35778888888888887543220 126788999988866 455577788888
Q ss_pred HHhccC---C----cchHH----HHHc---CChHHHHHHhcc-------------------CChhhHHHHHHHHHHHhCC
Q 040749 511 FNLSLN---Q----ANKAR----AIDA---GIVLPLMNLLEE-------------------RNLGMVDEALSILLLLATH 557 (643)
Q Consensus 511 ~nLs~~---~----~n~~~----lv~~---G~v~~Lv~lL~~-------------------~~~~~~~~Al~~L~~La~~ 557 (643)
..|+.. . ..+.. .+.. .+++.+..++.. .+..++..++.++.+....
T Consensus 158 ~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W 237 (1204)
T 3a6p_A 158 LRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW 237 (1204)
T ss_dssp HHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence 877532 1 11111 1111 122223333322 1123455566666555443
Q ss_pred hhhHHHhhcCC--cHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749 558 PEGRHKIGQLS--FIETLVEYIREGTPKNKECATAVLLELGANN 599 (643)
Q Consensus 558 ~~~~~~i~~~g--~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~ 599 (643)
... ..+.+.. .++.+..++. ++..+..|+.+|..++...
T Consensus 238 i~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 238 VSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp SCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred cCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence 222 1222322 5666665443 5788999999999998754
No 206
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=70.16 E-value=3.8 Score=31.75 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=29.2
Q ss_pred CCccccccCcccccCceecCC----CCccchHHHHHHHhc
Q 040749 272 PHEFLCPITLEIMRDPVIIAS----GQTFERESVQKWFDS 307 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~c----g~ty~r~~I~~~~~~ 307 (643)
...++|.+|.+.+.|...+.| +|.||-.|-...++.
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 345899999999999865543 699999998888874
No 207
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=69.88 E-value=30 Score=33.09 Aligned_cols=138 Identities=18% Similarity=0.103 Sum_probs=89.2
Q ss_pred HHHHHHH-HHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHH-hCCCCChHHHHHHHHHHHHhcC--Ccch
Q 040749 362 EEIVSLV-EQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQ-LLPYPDSKILEHAVTAVLNLSI--DESN 437 (643)
Q Consensus 362 ~~i~~Lv-~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~d~~~~~~a~~~L~nLs~--~~~~ 437 (643)
..+..+. .+..+...++|..|+..|..+ ... ...++.+.. +-..++-.+++.+..++..++. +++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 3344444 445566788888999977766 211 114455555 3335578999999999888774 222
Q ss_pred HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749 438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~ 516 (643)
..++.+.....+++..+|..|...+.--+..+. .... .-++|.|-.+..+.+.-+++....+|..++..
T Consensus 139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~---~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~ 208 (240)
T 3l9t_A 139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPY---FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK 208 (240)
T ss_dssp -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTT---TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccch---hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence 256778888899999999988776543221111 1111 22455555565667788999999999999976
Q ss_pred Ccch
Q 040749 517 QANK 520 (643)
Q Consensus 517 ~~n~ 520 (643)
++..
T Consensus 209 ~Pd~ 212 (240)
T 3l9t_A 209 FPDL 212 (240)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5553
No 208
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=69.01 E-value=59 Score=32.33 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=93.9
Q ss_pred CChHHHHHHhccC------ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh--ccCChhhHHHHHHHHHHHhC-
Q 040749 486 DGIPPLVDLLQNG------TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL--EERNLGMVDEALSILLLLAT- 556 (643)
Q Consensus 486 g~i~~Lv~lL~~~------~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL--~~~~~~~~~~Al~~L~~La~- 556 (643)
..+.....++++| +......|+-.|.-++..-..-.++++.. ...|-.++ ...++.+.+.|..++..--+
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRN 100 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRN 100 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHcc
Confidence 3455666677776 23345566666777776555556666532 34444443 23556788999988877666
Q ss_pred ChhhHHHhhc--CCcHHHHHHHHhc-------CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC--CHH
Q 040749 557 HPEGRHKIGQ--LSFIETLVEYIRE-------GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG--TSR 625 (643)
Q Consensus 557 ~~~~~~~i~~--~g~i~~Lv~lL~~-------~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~ 625 (643)
+|+....|.+ ...+..+..-|.. .+......-++||..|....... ....+..|.+++.-+ ++.
T Consensus 101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~ 175 (315)
T 3qml_C 101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSEDL-----PIYSTVVLQNVYERNNKDKQ 175 (315)
T ss_dssp CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC-------CCHHHHHHHHHHTTTCHH
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhh-----hhccHHHHHHHHccCCCCHH
Confidence 6766666655 4667666655543 23445666778888887765322 145678888888777 999
Q ss_pred HHHHHHHHHHHHH
Q 040749 626 AQRKANALLQLIS 638 (643)
Q Consensus 626 ~k~~A~~lL~~L~ 638 (643)
+|.|+..++..+-
T Consensus 176 ~k~Kvl~li~d~f 188 (315)
T 3qml_C 176 LQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999998887654
No 209
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=67.66 E-value=8.6 Score=33.73 Aligned_cols=71 Identities=13% Similarity=0.131 Sum_probs=54.9
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+.. ...+.....+..|..++...++.+++++..++....
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 35677888888899999999999998888776544 334444556777788887788999999999987654
No 210
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.12 E-value=6.6 Score=34.49 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~ 433 (643)
...+++.+.+.|.+.++.+|..|+..|..+.++. +.....++...++..|+++++..++.++..++..+...+.
T Consensus 40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999888754 3445566666677778888777788999999998887763
No 211
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.05 E-value=11 Score=33.93 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=54.6
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.....+.-|+.++.. .++.+++++..++..-.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3566788888889999999999999888887554 44455556677778887765 46899999999887654
No 212
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=65.86 E-value=51 Score=32.81 Aligned_cols=145 Identities=12% Similarity=0.082 Sum_probs=93.8
Q ss_pred hHHHHHHhcCC------CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh--ccCChhhHHHHHHHHHHhccCCc
Q 040749 447 IPAIIEILQSG------STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL--QNGTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 447 i~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL--~~~~~~~~~~A~~aL~nLs~~~~ 518 (643)
+..+..++++| +.+....|...|-.+|.+-++=..|.+.. ...|-.++ ....+..++.|+++|..-..+.+
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP 102 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNP 102 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCH
Confidence 44556667766 34567788899999998777666666532 33343433 33456788889998887666555
Q ss_pred chHH-HHH--cCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHH
Q 040749 519 NKAR-AID--AGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKE 586 (643)
Q Consensus 519 n~~~-lv~--~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e 586 (643)
.... +.+ ...+..+..-|.. ....++..-+++|..|..++ ..+ ...++..|.+++... ++..|.
T Consensus 103 ~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~---~~F-~~~~m~~L~~ly~~~~~d~~~k~ 178 (315)
T 3qml_C 103 PVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTS---EDL-PIYSTVVLQNVYERNNKDKQLQI 178 (315)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS---TTC---CCHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh---Hhh-hhccHHHHHHHHccCCCCHHHHH
Confidence 4444 333 3444444433322 23456777889999998876 223 235667888887766 888999
Q ss_pred HHHHHHHHHh
Q 040749 587 CATAVLLELG 596 (643)
Q Consensus 587 ~A~~~L~~L~ 596 (643)
.++.++..+-
T Consensus 179 Kvl~li~d~f 188 (315)
T 3qml_C 179 KVLELISKIL 188 (315)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988765
No 213
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=65.35 E-value=9.9 Score=33.36 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=51.5
Q ss_pred cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHH-HHH-CCcHHHHHHHhh-----cC---CHHHHHHHHHHHHHHH
Q 040749 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILA-ALQ-YGVYEHLIQLTE-----GG---TSRAQRKANALLQLIS 638 (643)
Q Consensus 569 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~-~~~-~g~i~~L~~ll~-----~g---~~~~k~~A~~lL~~L~ 638 (643)
++..|.+-|...++..+-.|+.+|..||.++.+.+.. +.+ ...|..+..+-. .| ...+|.+|..++..|.
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 5667888888889999999999999999876655444 433 333444443321 22 2578999999999987
Q ss_pred hhc
Q 040749 639 KSE 641 (643)
Q Consensus 639 ~~~ 641 (643)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 644
No 214
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=65.33 E-value=38 Score=40.03 Aligned_cols=101 Identities=9% Similarity=0.033 Sum_probs=61.6
Q ss_pred CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-----CChHHHHHHHHHHHHhcCC-cchHHHHHhcCC
Q 040749 373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-----PDSKILEHAVTAVLNLSID-ESNKRLIAQQGA 446 (643)
Q Consensus 373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~ 446 (643)
+.+|..+..|+..++.++..-......-.-...++.|+.+... +.+.++..++++++..+.. ..+...+ ..+
T Consensus 464 ~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~v 541 (1049)
T 3m1i_C 464 EWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTV 541 (1049)
T ss_dssp SCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHH
Confidence 3578889999999999874322221111111244455554332 1233444677888877642 1122222 235
Q ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcccc
Q 040749 447 IPAIIEILQSGSTEARENSAAALFSLSML 475 (643)
Q Consensus 447 i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~ 475 (643)
++.++..|.+.++.++..|+.++.+++..
T Consensus 542 l~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 542 ILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 67777788787899999999999999864
No 215
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=64.68 E-value=72 Score=37.76 Aligned_cols=163 Identities=12% Similarity=0.112 Sum_probs=96.1
Q ss_pred HHHHHhCCCC----ChHHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHH----HhcCCCHHHHHHHHHHHHhccc
Q 040749 407 PPLVQLLPYP----DSKILEHAVTAVLNLSI----DESNKRLIAQQGAIPAIIE----ILQSGSTEARENSAAALFSLSM 474 (643)
Q Consensus 407 ~~Lv~lL~~~----d~~~~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~----lL~~~~~e~~~~Aa~~L~~Ls~ 474 (643)
..+..++.++ ++.++..++-++++|.. +.... ....++.+.+ .+..++.+-+..++.+|.|+..
T Consensus 394 ~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~ 469 (1056)
T 1lsh_A 394 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ 469 (1056)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence 3444555542 44556666666665542 21110 1122444444 4456677777888888888854
Q ss_pred cccchhhhhccCChHHHHHHhcc-------CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHH
Q 040749 475 LDENKITIGLSDGIPPLVDLLQN-------GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVD 545 (643)
Q Consensus 475 ~~~~k~~i~~~g~i~~Lv~lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~ 545 (643)
...++.|..++.. ...+++..|+.||.++....+.. +-+.|++++.+ .+.+++.
T Consensus 470 ----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~-------v~~il~~i~~n~~e~~EvRi 532 (1056)
T 1lsh_A 470 ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRI 532 (1056)
T ss_dssp ----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHH
T ss_pred ----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-------HHHHHHHHhcCCCCChHHHH
Confidence 3456777777642 13467888999999887543322 22456777744 5677777
Q ss_pred HHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCC
Q 040749 546 EALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGANN 599 (643)
Q Consensus 546 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~ 599 (643)
.|+.+|..- +| ....+..+...+.. .+..+.....+.|.+++...
T Consensus 533 aA~~~Lm~t--~P-------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 533 RSCIVFFES--KP-------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHT--CC-------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHH--Cc-------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 777766532 22 12345566666664 45667777777777777654
No 216
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=64.62 E-value=1.5 Score=28.41 Aligned_cols=16 Identities=19% Similarity=0.519 Sum_probs=13.3
Q ss_pred ccccccCcccccCcee
Q 040749 274 EFLCPITLEIMRDPVI 289 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~ 289 (643)
-|.||+|+..+..|-.
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4999999998887754
No 217
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.98 E-value=13 Score=32.91 Aligned_cols=71 Identities=15% Similarity=0.098 Sum_probs=55.9
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEG------GTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~------g~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.....+.-|+.++.. .++.+++++..++..-.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999998887554 44555566788888888864 36799999998887654
No 218
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=60.61 E-value=16 Score=32.32 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC------CChHHHHHHHHHHHHhc
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY------PDSKILEHAVTAVLNLS 432 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~------~d~~~~~~a~~~L~nLs 432 (643)
...++..+...|.+.++.+|..|+..|-.+.++.. .....|+...++..|+++++. .+..++..++..+...+
T Consensus 46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999987543 445667777788889998863 47889999999988876
Q ss_pred C
Q 040749 433 I 433 (643)
Q Consensus 433 ~ 433 (643)
.
T Consensus 126 ~ 126 (149)
T 3g2s_A 126 V 126 (149)
T ss_dssp H
T ss_pred H
Confidence 4
No 219
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=60.45 E-value=2.5 Score=26.10 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=13.7
Q ss_pred CccccccCcccccCcee
Q 040749 273 HEFLCPITLEIMRDPVI 289 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~ 289 (643)
..|.||+|+..|-|+-+
T Consensus 2 ~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCEECTTSSCEESSHHH
T ss_pred CcccCccccccCcChHH
Confidence 46889999998888754
No 220
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=60.40 E-value=15 Score=33.37 Aligned_cols=71 Identities=15% Similarity=0.050 Sum_probs=55.8
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEHLIQLTEG------GTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~------g~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+++.. ...+.....+.-|+.++.. .++.+|+++..++..-.
T Consensus 50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 35677888888999999999999999998887654 4455556678888888853 36899999999987654
No 221
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=58.69 E-value=8.2 Score=31.39 Aligned_cols=53 Identities=23% Similarity=0.368 Sum_probs=41.7
Q ss_pred CCCccccccCcccccCceecC-CC-----CccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749 271 IPHEFLCPITLEIMRDPVIIA-SG-----QTFERESVQKWFDSNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~-cg-----~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 324 (643)
.++.++|||+++.-..-|.+. ++ .-|+...+.+....|. .=|.+|.+++...+
T Consensus 24 ~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sMI 82 (102)
T 2kkx_A 24 PLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASII 82 (102)
T ss_dssp CTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTTE
T ss_pred CHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhhE
Confidence 356689999999999988873 22 3699999999998764 57999998886644
No 222
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.51 E-value=22 Score=31.51 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=55.4
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhhc------CCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEHLIQLTEG------GTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~------g~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-+.+.++.++..|+.+|-.+..+.+.. ...+.....+.-|+.++.. .++.+|.++..++..-.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 35677888888899999999999999988776544 3455556678888888853 47899999999887654
No 223
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.35 E-value=29 Score=32.77 Aligned_cols=73 Identities=8% Similarity=0.085 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhc
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLS 432 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs 432 (643)
.+.++..+...|.+.++.+|..|+..|-.+.++. +..+..|+...++..|+.+++. .+..++..++..+...+
T Consensus 40 ~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999764 3456667777777788877753 46788888888877765
No 224
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=53.17 E-value=31 Score=31.20 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=19.2
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
+..+.||+|+.+..+ .....||.|+.+-.
T Consensus 136 ~~~~~C~~CG~i~~~--------------------~~p~~CP~Cg~~~~ 164 (170)
T 3pwf_A 136 KKVYICPICGYTAVD--------------------EAPEYCPVCGAPKE 164 (170)
T ss_dssp SCEEECTTTCCEEES--------------------CCCSBCTTTCCBGG
T ss_pred CCeeEeCCCCCeeCC--------------------CCCCCCCCCCCCHH
Confidence 456889887766642 12347999987644
No 225
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.11 E-value=31 Score=32.78 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~ 433 (643)
...++..+.+.|.+.++.+|..|+..|-.+.++.. .....|+...++..|+++++. .+..+++.++..+...+.
T Consensus 43 ~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 43 AKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999987533 356666666777777777753 478899999998888764
No 226
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=48.67 E-value=24 Score=34.29 Aligned_cols=130 Identities=17% Similarity=0.182 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCcHHHH-HhCCCCChHHHHHHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHhcC
Q 040749 379 QKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDSKILEHAVTAVLNLSIDES-NKRLIAQQGAIPAIIEILQS 456 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~d~~~~~~a~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~ 456 (643)
+.-++..+|.++.+.+.+ +.+..++ ..+.+.++..+--+++++.|+..++. ++..+........++..+.+
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~ 143 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 143 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHH
Confidence 444666666666443322 2233222 23334567788899999999999988 67766543334455554421
Q ss_pred --------CCHHHHHHHHHHHHhccccccc-hhhhhccCChHHHHHHhcc---------CChhhHHHHHHHHHHhccCCc
Q 040749 457 --------GSTEARENSAAALFSLSMLDEN-KITIGLSDGIPPLVDLLQN---------GTIRGKKDAVTALFNLSLNQA 518 (643)
Q Consensus 457 --------~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~---------~~~~~~~~A~~aL~nLs~~~~ 518 (643)
.+..++..++..++|+|..-.. +. .......++..+.. .+.+...-++.||.+|...++
T Consensus 144 ~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~ 220 (253)
T 3gae_A 144 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEP 220 (253)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSG
T ss_pred HhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcH
Confidence 1345777888899999853211 11 12334455555542 366788888899998875433
No 227
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=47.96 E-value=78 Score=28.05 Aligned_cols=74 Identities=11% Similarity=0.169 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHH-HHHhCCC---CChHHHHHHHHHHHHhcC
Q 040749 360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPP-LVQLLPY---PDSKILEHAVTAVLNLSI 433 (643)
Q Consensus 360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~-Lv~lL~~---~d~~~~~~a~~~L~nLs~ 433 (643)
.+.++..+.+.|+ +.++.+|..|+..|-.+.++. +..+..++...++.. |++++.. ++..+++.++..+...+.
T Consensus 51 ~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 51 PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 4688999999998 589999999999999999764 566667777778887 7887742 345888999888877764
No 228
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=47.40 E-value=5.8 Score=27.61 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=11.9
Q ss_pred CCCCccccccCccc
Q 040749 270 VIPHEFLCPITLEI 283 (643)
Q Consensus 270 ~~~~~f~CpIc~~~ 283 (643)
++|+++.||+|+.-
T Consensus 26 ~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 26 QLPDDWCCPVCGVS 39 (46)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCcCCCCc
Confidence 58999999999853
No 229
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=47.28 E-value=11 Score=32.07 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=39.6
Q ss_pred CccccccCcccccC---ceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749 273 HEFLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI 324 (643)
Q Consensus 273 ~~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l 324 (643)
+-|.|..|...+.| +....-|..||..|..+.|... ..|..|++++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~-~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC-CSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC-CccccCCCCcCchhe
Confidence 45999999999973 4566789999999998877531 269999998876444
No 230
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.93 E-value=34 Score=32.51 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=53.8
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+. ....+.....+..|..++... ++.+++++..++....
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 3567788888899999999999999888877554 344444555667777777553 6789999999988654
No 231
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=45.70 E-value=7.6 Score=31.47 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=11.8
Q ss_pred ccchHHHHHHHhc
Q 040749 295 TFERESVQKWFDS 307 (643)
Q Consensus 295 ty~r~~I~~~~~~ 307 (643)
-|||.|+.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999985
No 232
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=44.90 E-value=8 Score=31.30 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=11.8
Q ss_pred ccchHHHHHHHhc
Q 040749 295 TFERESVQKWFDS 307 (643)
Q Consensus 295 ty~r~~I~~~~~~ 307 (643)
-|||.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5999999999984
No 233
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=44.31 E-value=31 Score=32.57 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=54.2
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|.++++.++..|+.+|-.+..+.+.. ...+.....+..|..++.+. +..+|+++..++..-.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 35667778888899999999999999998887654 34454555777778777654 6789999988887654
No 234
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=43.46 E-value=13 Score=31.66 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=38.2
Q ss_pred CCccccccCcccccC-ceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 272 PHEFLCPITLEIMRD-PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
++-|.|..|...+.+ +....-|..||..|..+.+ ...|+.|++++...
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCTT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCcC
Confidence 456999999998876 5666789999999987654 35799999988753
No 235
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=43.20 E-value=23 Score=26.16 Aligned_cols=39 Identities=31% Similarity=0.515 Sum_probs=29.0
Q ss_pred hhhHHHHHhhhcCCCCChh---HHHHHHHHHHHHHHHHHHHHhhc
Q 040749 65 LLLPLIDEIRELDTPISET---NMAALCNLKKALVVAKKLLKLCN 106 (643)
Q Consensus 65 ~l~~~~ee~~~~~~~~~~~---~~~~l~~L~~~l~~ak~ll~~c~ 106 (643)
.|+.++||+... ..|+ ...+.+.|..-+..|+.|+..|.
T Consensus 15 ~LL~VIeEmgkd---IrpTYaGsk~~~ERLkR~I~hAr~LVrECl 56 (65)
T 2kw6_A 15 ELLAIIEELGKE---IRPTYAGSKSAMERLKRGIIHARGLVRECL 56 (65)
T ss_dssp HHHHHHHHHTTT---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---cchhhccCcchHHHHHHHHHHHHHHHHHHH
Confidence 466788888531 1222 35588999999999999999994
No 236
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=42.64 E-value=9.1 Score=27.37 Aligned_cols=15 Identities=20% Similarity=0.572 Sum_probs=12.5
Q ss_pred CCCCCccccccCccc
Q 040749 269 LVIPHEFLCPITLEI 283 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~ 283 (643)
.++|+++.||+|+--
T Consensus 31 ~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 31 EDLPDDWACPVCGAS 45 (52)
T ss_dssp TSSCTTCCCSSSCCC
T ss_pred HHCCCCCcCCCCCCc
Confidence 368999999999863
No 237
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=41.58 E-value=8 Score=27.91 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=12.2
Q ss_pred CCCCccccccCccc
Q 040749 270 VIPHEFLCPITLEI 283 (643)
Q Consensus 270 ~~~~~f~CpIc~~~ 283 (643)
++|+++.||+|+--
T Consensus 32 ~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 32 DIPDDWVCPLCGVG 45 (54)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCcCCCCc
Confidence 68999999999864
No 238
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=41.28 E-value=1.4 Score=35.67 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=27.3
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
+..||.|...|.- ..|+.+|..|=+.+-.. ..||.|+++|..
T Consensus 32 ~~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~~--a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQ----DNGHARCRSCGEFIEMK--ALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEE----ETTEEEETTTCCEEEEE--EECTTTCSBCEE
T ss_pred cccCccCCCccee----cCCEEECccccchhhcc--ccCcchhhHHHH
Confidence 3789999988751 12333466665433222 369999999875
No 239
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=41.27 E-value=5.3e+02 Score=30.74 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=98.8
Q ss_pred cCCCHHHHHHHHHHHHHhhcc-----CchhHHHHHhcCCcHHHHHhCCC---CChHHHHHHHHHHHHhcCCcchHHHHHh
Q 040749 372 SSSKLEVQKEAVRKIRLLSKE-----NPENRILIADCGAIPPLVQLLPY---PDSKILEHAVTAVLNLSIDESNKRLIAQ 443 (643)
Q Consensus 372 ~s~~~~~~~~A~~~L~~L~~~-----~~~~r~~i~~~g~i~~Lv~lL~~---~d~~~~~~a~~~L~nLs~~~~~k~~i~~ 443 (643)
.+.+..+|.-|+..|++..+. +++.|..|.+ ..+..+...-.. .+..++.....++..++..+-.. ..
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~W 132 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HW 132 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cc
Confidence 355788888899888887643 3344444432 244444443211 35677888888888877532110 13
Q ss_pred cCChHHHHHHhcCCCHHHHHHHHHHHHhcccc---cc----chh-----hhhc--cCChHHHHHHhccC-----------
Q 040749 444 QGAIPAIIEILQSGSTEARENSAAALFSLSML---DE----NKI-----TIGL--SDGIPPLVDLLQNG----------- 498 (643)
Q Consensus 444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~----~k~-----~i~~--~g~i~~Lv~lL~~~----------- 498 (643)
.+.++.|+.++.+ +...++.+..+|..|+.. .+ .+. .+.. ...++.+..++.+.
T Consensus 133 p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~ 211 (1204)
T 3a6p_A 133 PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDT 211 (1204)
T ss_dssp TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 5677888888866 456677888888888642 11 111 1111 12233333444321
Q ss_pred --------ChhhHHHHHHHHHHhccCCcchHHHHHcC--ChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749 499 --------TIRGKKDAVTALFNLSLNQANKARAIDAG--IVLPLMNLLEERNLGMVDEALSILLLLAT 556 (643)
Q Consensus 499 --------~~~~~~~A~~aL~nLs~~~~n~~~lv~~G--~v~~Lv~lL~~~~~~~~~~Al~~L~~La~ 556 (643)
+......++.++.+....-+ ...+++.. .++.+..++. ++.++..|+.+|..+.+
T Consensus 212 ~~~~~~~~~~~l~~~aL~~l~~~l~Wi~-~~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 212 SQESKAQANCRVGVAALNTLAGYIDWVS-MSHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTTTSC-HHHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHT
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHhccC-HHHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 12344455556654433211 12233332 5566665554 56789999999999987
No 240
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=40.62 E-value=14 Score=29.65 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=35.9
Q ss_pred CCCccccccCcccccCceecCCCCcc-chHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 271 IPHEFLCPITLEIMRDPVIIASGQTF-ERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 271 ~~~~f~CpIc~~~m~dPv~~~cg~ty-~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
.-.-+.|.-|-...+ =.+.|..+| |+.|+...+... ..||.|+.+|...-
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~S-drCpIC~~pLPtkl 75 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVS-NRCPICKMPLPTKL 75 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSS-SEETTTTEECCCCS
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhc-cCCcccCCcCCcce
Confidence 344578888865544 445566555 999999888765 47999999988653
No 241
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=37.12 E-value=12 Score=29.43 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=12.6
Q ss_pred CCCCCccccccCccc
Q 040749 269 LVIPHEFLCPITLEI 283 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~ 283 (643)
.++|+++.||+|.--
T Consensus 55 edlPddW~CPvCga~ 69 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTSCTTCCCTTTCCC
T ss_pred hHCCCCCcCCCCCCC
Confidence 368999999999864
No 242
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=36.37 E-value=11 Score=26.98 Aligned_cols=14 Identities=21% Similarity=0.724 Sum_probs=12.1
Q ss_pred CCCCccccccCccc
Q 040749 270 VIPHEFLCPITLEI 283 (643)
Q Consensus 270 ~~~~~f~CpIc~~~ 283 (643)
++|+++.||+|.--
T Consensus 31 ~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 31 DLPDDWVCPLCGAP 44 (52)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred HCCCCCcCCCCCCC
Confidence 68999999999763
No 243
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=36.15 E-value=11 Score=27.32 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=12.1
Q ss_pred CCCCccccccCccc
Q 040749 270 VIPHEFLCPITLEI 283 (643)
Q Consensus 270 ~~~~~f~CpIc~~~ 283 (643)
++|+++.||+|+--
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 58999999999863
No 244
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.89 E-value=64 Score=28.63 Aligned_cols=71 Identities=15% Similarity=0.070 Sum_probs=51.6
Q ss_pred CcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHH-HHHHhhc-C--CHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIR-EGTPKNKECATAVLLELGANNSS-FILAALQYGVYEH-LIQLTEG-G--TSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~-L~~ll~~-g--~~~~k~~A~~lL~~L~ 638 (643)
.++..|.+-|. .+++.++..|+.+|-.+..+++. ....+.....+.- |+.++.. . ...+|+++..++..-.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 35667778886 47899999999999998887644 4444555667776 7777742 2 3589999998887654
No 245
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=34.78 E-value=33 Score=29.13 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCccccccCccccc---CceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMR---DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~---dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
++-|.|..|...+. .+....-|..||..|..+-+... ..|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~-~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD-GLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC-EECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc-cChhhcCCccCc
Confidence 45699999999995 36777789999999998876421 169999998865
No 246
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=34.59 E-value=1.1e+02 Score=26.71 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=56.4
Q ss_pred CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638 (643)
Q Consensus 568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~ 638 (643)
.++..+.+.+....|.-|-.++.++-.++.+.+.........++.+.+.......++..|.+...++..=.
T Consensus 43 ~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~ 113 (144)
T 1sz9_A 43 YFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWL 113 (144)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 45666777777788999999999999999876555556667888888888888889999999888876543
No 247
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=34.27 E-value=22 Score=29.08 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=27.2
Q ss_pred CccccccCcccccCceecCCCCccchHHHHHHHhcC
Q 040749 273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN 308 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~ 308 (643)
..+.||+|+..+..+...+ +...+..|+.|...+
T Consensus 62 ~~~~cP~~~~~l~~~~L~p--n~~Lk~~I~~~~~~~ 95 (100)
T 2kre_A 62 NSPTDPFNRQTLTESMLEP--VPELKEQIQAWMREK 95 (100)
T ss_dssp SCSBCSSSCCBCCTTSSEE--CHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCCCChhhceE--CHHHHHHHHHHHHHh
Confidence 3589999999998765555 677899999999864
No 248
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=33.49 E-value=41 Score=25.15 Aligned_cols=39 Identities=31% Similarity=0.501 Sum_probs=27.5
Q ss_pred hhhHHHHHhhhcCCCCChh---HHHHHHHHHHHHHHHHHHHHhhc
Q 040749 65 LLLPLIDEIRELDTPISET---NMAALCNLKKALVVAKKLLKLCN 106 (643)
Q Consensus 65 ~l~~~~ee~~~~~~~~~~~---~~~~l~~L~~~l~~ak~ll~~c~ 106 (643)
.|+.++||+... ..|+ ...+.+-|..-+..|+.|+..|.
T Consensus 19 ~LL~vIeEmgkd---irPTyagsks~~ERLkRgI~hAr~LVRECl 60 (69)
T 2m1l_A 19 DLLSVIEEMGKE---IRPTYAGSKSAMERLKRGIIHARALVRECL 60 (69)
T ss_dssp HHHHHHHHHHTT---HHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccc---ccchhhcCcchHHHHHHHHHHHHHHHHHHH
Confidence 455667777421 1121 24588999999999999999994
No 249
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=33.34 E-value=33 Score=33.23 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=74.3
Q ss_pred cCChhhHHHHHHHHHHhccCCc-chHHHHHcCChHHHHHHhcc--------CChhhHHHHHHHHHHHhCChh-hHHHhhc
Q 040749 497 NGTIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLPLMNLLEE--------RNLGMVDEALSILLLLATHPE-GRHKIGQ 566 (643)
Q Consensus 497 ~~~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~--------~~~~~~~~Al~~L~~La~~~~-~~~~i~~ 566 (643)
++++..+.-+++++.|+-.++. .+..+........+++.+.+ .+..++-.+..++.|++..-- .+. +
T Consensus 101 ~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~ 177 (253)
T 3gae_A 101 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 177 (253)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---C
T ss_pred CCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---h
Confidence 3456678889999999998888 56555443334444544422 244667778888899876211 111 1
Q ss_pred CCcHHHHHHHHhc---------CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHH
Q 040749 567 LSFIETLVEYIRE---------GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANA 632 (643)
Q Consensus 567 ~g~i~~Lv~lL~~---------~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~ 632 (643)
......+++.+.. .+++....++.+|.+|...++...+.....+.+....... ...+|.+.-+..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~~~~~~~~~~~~~-~~e~R~~~v~~e 251 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSY-GNVPRFKDIFDD 251 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTTTCHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhccHHHHHHHHHHc-ccchHHHHHHHh
Confidence 2345566666652 2566777788888888765543332222122222222111 146777766654
No 250
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=33.16 E-value=13 Score=28.41 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=12.2
Q ss_pred CCCCccccccCccc
Q 040749 270 VIPHEFLCPITLEI 283 (643)
Q Consensus 270 ~~~~~f~CpIc~~~ 283 (643)
++|+++.||+|.--
T Consensus 36 ~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 36 DLSDSFMCPACRSP 49 (70)
T ss_dssp GSCTTCBCTTTCCB
T ss_pred hCCCCCcCCCCCCC
Confidence 58999999999864
No 251
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=32.59 E-value=1.2e+02 Score=31.55 Aligned_cols=129 Identities=17% Similarity=0.173 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCcHHHH-HhCCCCChHHHHHHHHHHHHhcCCcch-HHHHHhcCChHHHHHHhcC
Q 040749 379 QKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDSKILEHAVTAVLNLSIDESN-KRLIAQQGAIPAIIEILQS 456 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~ 456 (643)
+.-++..+|.++.+.+.+ +.+..++ ..+.+..+..+--++++|.|+..++.. +..+........+++.+..
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 315 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 315 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHH
Confidence 445777777766544322 2233333 234455678888999999999998885 4444332234556665531
Q ss_pred --------CCHHHHHHHHHHHHhccccccc-hhhhhccCChHHHHHHhc---------cCChhhHHHHHHHHHHhccCC
Q 040749 457 --------GSTEARENSAAALFSLSMLDEN-KITIGLSDGIPPLVDLLQ---------NGTIRGKKDAVTALFNLSLNQ 517 (643)
Q Consensus 457 --------~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~~~ 517 (643)
.+.-++..++.+++|+|..-.. +. .......++..+. ..+.+...-++.||.+|....
T Consensus 316 ~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 316 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 1345777888889999854211 11 1233455666665 247788889999999998543
No 252
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=31.50 E-value=42 Score=30.93 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=17.4
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
.+.|++|+.++... .....||.|+.+-.
T Consensus 155 ~~~C~~CG~~~~g~-------------------~~p~~CP~C~~~k~ 182 (191)
T 1lko_A 155 KWRCRNCGYVHEGT-------------------GAPELCPACAHPKA 182 (191)
T ss_dssp EEEETTTCCEEEEE-------------------ECCSBCTTTCCBGG
T ss_pred eEEECCCCCEeeCC-------------------CCCCCCCCCcCCHH
Confidence 58888876664411 12337999987643
No 253
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=31.28 E-value=51 Score=29.48 Aligned_cols=48 Identities=8% Similarity=0.183 Sum_probs=37.3
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~ 322 (643)
++-|.|..|...+.+....--|..||..|..+-+. ..|..|+.++...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 45699999999887654456799999999887663 4688898877654
No 254
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=31.00 E-value=57 Score=30.35 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=18.3
Q ss_pred CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
..+.|++|+.++.. . ....||.|+.+-.
T Consensus 170 ~~~~C~~CG~i~~g--~------------------~p~~CP~C~~~k~ 197 (202)
T 1yuz_A 170 KFHLCPICGYIHKG--E------------------DFEKCPICFRPKD 197 (202)
T ss_dssp CEEECSSSCCEEES--S------------------CCSBCTTTCCBGG
T ss_pred cEEEECCCCCEEcC--c------------------CCCCCCCCCCChH
Confidence 46889887766541 1 1257999987643
No 255
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=30.67 E-value=34 Score=31.07 Aligned_cols=49 Identities=8% Similarity=0.170 Sum_probs=35.2
Q ss_pred CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS 323 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~ 323 (643)
++-|.|..|...+.+.....-|..||..|..+-+ ...|..|++++....
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~~ 133 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPTQ 133 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSSC
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCCc
Confidence 3558899998888754444578899988876644 347999988876543
No 256
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.17 E-value=87 Score=31.96 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhccCchhHHHHHhcCCcHHHH-HhCCCCChHHHHHHHHHHHHhcCCcch-HHHHHhcCChHHHHHHhc-
Q 040749 379 QKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDSKILEHAVTAVLNLSIDESN-KRLIAQQGAIPAIIEILQ- 455 (643)
Q Consensus 379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~- 455 (643)
+--++..+|.++.+.+.. +.+..++ ..+.+..+..+--+++++.|+-.++.. +..+........+++.+.
T Consensus 180 ~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~ 252 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDT 252 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCS
T ss_pred cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHH
Confidence 445677777666543321 2233333 233455677888999999999998884 444432212344454442
Q ss_pred ---C----CCHHHHHHHHHHHHhccccccc-hhhhhccCChHHHHHHhc---------cCChhhHHHHHHHHHHhccC
Q 040749 456 ---S----GSTEARENSAAALFSLSMLDEN-KITIGLSDGIPPLVDLLQ---------NGTIRGKKDAVTALFNLSLN 516 (643)
Q Consensus 456 ---~----~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~---------~~~~~~~~~A~~aL~nLs~~ 516 (643)
. .+.-++..++..++|+|..-.. +. .......++..+. ..+.+...-++.||.+|...
T Consensus 253 ~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 253 EFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1 1345777888889999854211 11 1233455666665 24778888899999999853
No 257
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.80 E-value=43 Score=25.31 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=34.3
Q ss_pred CCccccccCcccccC-ceecCCCCccch-HHHHHHHhcCCCCCCCcCcccc
Q 040749 272 PHEFLCPITLEIMRD-PVIIASGQTFER-ESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-Pv~~~cg~ty~r-~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
++-|.|..|...+.+ +....-|..||. .|..+.+. ..|..|+..+.
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~~ 72 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAES 72 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCcee
Confidence 456999999999876 566678899999 58876553 35888875543
No 258
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=29.77 E-value=16 Score=29.10 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=12.1
Q ss_pred CCCCccccccCccc
Q 040749 270 VIPHEFLCPITLEI 283 (643)
Q Consensus 270 ~~~~~f~CpIc~~~ 283 (643)
++|+++.||+|+--
T Consensus 64 dlPddW~CPvCga~ 77 (87)
T 1s24_A 64 DIPDDWCCPDCGAT 77 (87)
T ss_dssp GCCTTCCCSSSCCC
T ss_pred HCCCCCCCCCCCCC
Confidence 68999999999853
No 259
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.30 E-value=3.1e+02 Score=25.23 Aligned_cols=127 Identities=11% Similarity=0.069 Sum_probs=67.9
Q ss_pred CcHHHHHhCCC------CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC---CCHHHHHHHHHHHHhcccc
Q 040749 405 AIPPLVQLLPY------PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS---GSTEARENSAAALFSLSML 475 (643)
Q Consensus 405 ~i~~Lv~lL~~------~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~---~~~e~~~~Aa~~L~~Ls~~ 475 (643)
.+|.++.++.. .|.......+.....|..++.-.-...-...+|+++..+-+ +...+|+.||.+|..++..
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~ 120 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDT 120 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence 56777766543 24444444555555554443321111112245666665532 2348999999999999754
Q ss_pred ccchhhhhccCChHHHHHHhcc--CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhc
Q 040749 476 DENKITIGLSDGIPPLVDLLQN--GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE 537 (643)
Q Consensus 476 ~~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~ 537 (643)
-.....-..+..+..+.+.+.+ .+.....-|+..|..|.. ..++.-++|.+-.+..
T Consensus 121 ~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~------~~vr~~llP~l~~~~~ 178 (196)
T 4atg_A 121 YSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSK------NVVNTVIREHAEEYKR 178 (196)
T ss_dssp HTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCH------HHHHTHHHHHHHHHHH
T ss_pred hCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHH------HHHHHhhhcCHHHHHH
Confidence 2222222234455566655544 345666777777776652 3455555566655543
No 260
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=28.14 E-value=23 Score=32.57 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCccccccCcccccC---ceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
++-|.|..|...+.+ +....-|..||..|..+-+... ..|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~-~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS-GACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC-EECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccC-CccccCCCcccc
Confidence 456999999999875 7777789999999998876421 159999988864
No 261
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=26.56 E-value=3.2e+02 Score=23.78 Aligned_cols=82 Identities=11% Similarity=0.089 Sum_probs=59.1
Q ss_pred HhCChhhHHHhhcCCcHHHHHHHHhc---C---ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC--CHH
Q 040749 554 LATHPEGRHKIGQLSFIETLVEYIRE---G---TPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG--TSR 625 (643)
Q Consensus 554 La~~~~~~~~i~~~g~i~~Lv~lL~~---~---s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~ 625 (643)
......-+..+++.|++..+-.-|.- + +..+|+..+.+|..+-. + ...+.+.|+-..++.+..+. ++.
T Consensus 47 ~l~k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lPI-~---~e~Lk~SglGkvv~~l~k~~~et~~ 122 (145)
T 2xpp_A 47 ILMSKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMKI-H---KEHLVTSGVGKIVYFYSINPKESKE 122 (145)
T ss_dssp HHTCTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSCC-C---HHHHHHHCHHHHHHHHHHCTTSCHH
T ss_pred HHhhHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCCC-C---HHHhhcCCCCcchhhhhcCCccCHH
Confidence 34455667888999999999998873 3 35678889999888742 2 34455566666666666554 889
Q ss_pred HHHHHHHHHHHHHh
Q 040749 626 AQRKANALLQLISK 639 (643)
Q Consensus 626 ~k~~A~~lL~~L~~ 639 (643)
.|+.|..++..-+|
T Consensus 123 nk~la~~Li~~WsR 136 (145)
T 2xpp_A 123 VRASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999876554
No 262
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=26.03 E-value=34 Score=27.74 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=26.1
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcC
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN 308 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~ 308 (643)
...||+|...+....+++ +...+..|+.|....
T Consensus 57 ~~~cP~~~~~l~~~~L~p--n~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIRP--NTELKEKIQRWLAER 89 (98)
T ss_dssp SCBCTTTCSBCCTTTSEE--CHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCChhhceE--cHHHHHHHHHHHHHc
Confidence 578999999988654444 677899999999864
No 263
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=25.88 E-value=5e+02 Score=30.58 Aligned_cols=180 Identities=13% Similarity=0.111 Sum_probs=101.6
Q ss_pred ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccC-----Ccc
Q 040749 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLN-----QAN 519 (643)
Q Consensus 446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~-----~~n 519 (643)
.++.++..+.+++.+.|..|-..|..+-.++ ++...+..+|.. .++.++..|+.+|.+.... ++.
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp---------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e 99 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP---------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRN 99 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS---------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc---------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHH
Confidence 3555666666677777888888777765433 344445555543 4778899999999887542 333
Q ss_pred hHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749 520 KARAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL 592 (643)
Q Consensus 520 ~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L 592 (643)
....++..++..+...-.+ .++.++...+.++..++.. ++. + .+.++.++..+.. ++...+..+.+|
T Consensus 100 ~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~----W-p~fi~dLv~~~~~-~~~~~~~~L~IL 173 (1073)
T 3gjx_A 100 QCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKH----W-PTFISDIVGASRT-SESLCQNNMVIL 173 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTT----C-TTHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhh----c-cHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 3444555555555554322 2345566666667766542 221 1 3577777777753 566778888888
Q ss_pred HHHhcC--C-------HHHH---HHHHHC---CcHHHHHHHhh-cCCHHHHHHHHHHHHHHHhh
Q 040749 593 LELGAN--N-------SSFI---LAALQY---GVYEHLIQLTE-GGTSRAQRKANALLQLISKS 640 (643)
Q Consensus 593 ~~L~~~--~-------~~~~---~~~~~~---g~i~~L~~ll~-~g~~~~k~~A~~lL~~L~~~ 640 (643)
..|+.. + .... ...+.. .+++.+..++. .+++.+...+..+|+.+..+
T Consensus 174 ~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW 237 (1073)
T 3gjx_A 174 KLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW 237 (1073)
T ss_dssp HHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 887643 1 1111 112222 23444444453 34666666666666655443
No 264
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=25.22 E-value=19 Score=27.94 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=31.6
Q ss_pred cccccCccccc--Cc--eecCCCC---c-cchHHHHHHHhcCCCCCCCcCcccccCCCCccH
Q 040749 275 FLCPITLEIMR--DP--VIIASGQ---T-FERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328 (643)
Q Consensus 275 f~CpIc~~~m~--dP--v~~~cg~---t-y~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~ 328 (643)
-.||||+..+. +- -+++-++ + -+|.-...-+.+-.+.||.|+..+--..+..+.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEFyG~~Lp~~E 70 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRRE 70 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTT
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHHhcccCChHH
Confidence 47999998765 11 0122222 2 255555555555556799999887766655443
No 265
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.40 E-value=31 Score=26.07 Aligned_cols=36 Identities=11% Similarity=0.157 Sum_probs=24.9
Q ss_pred CCccccccCccccc--CceecCCCCccchHHHHHHHhc
Q 040749 272 PHEFLCPITLEIMR--DPVIIASGQTFERESVQKWFDS 307 (643)
Q Consensus 272 ~~~f~CpIc~~~m~--dPv~~~cg~ty~r~~I~~~~~~ 307 (643)
++-|.|..|...+. +.....-|..||..|..+.+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~~~~ 66 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAARTE 66 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHTSSS
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHhhcc
Confidence 45588888888776 4455566778888887765543
No 266
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=23.86 E-value=5.2 Score=31.45 Aligned_cols=41 Identities=17% Similarity=0.423 Sum_probs=20.8
Q ss_pred cccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 275 FLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 275 f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
..||.|...|.- ..++.+|..|=..+ .. ...||.|++++..
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~-~~-~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDF-SL-QALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEE-EE-EEECSSSCSCCCE
T ss_pred CCCCCCCCcccc----CCCceECccccccC-CC-cccCcchhhHHHH
Confidence 568888776641 11222344443221 11 1258888877754
No 267
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.88 E-value=3.6e+02 Score=28.01 Aligned_cols=132 Identities=10% Similarity=0.085 Sum_probs=77.2
Q ss_pred cCChhhHHHHHHHHHHhccCCcchHHHHHc-CChHHHHHHhcc--------CChhhHHHHHHHHHHHhCChhh-HHHhhc
Q 040749 497 NGTIRGKKDAVTALFNLSLNQANKARAIDA-GIVLPLMNLLEE--------RNLGMVDEALSILLLLATHPEG-RHKIGQ 566 (643)
Q Consensus 497 ~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~-G~v~~Lv~lL~~--------~~~~~~~~Al~~L~~La~~~~~-~~~i~~ 566 (643)
+..+..+..+++++.|+-.++.....++.. .....+++.+.. .+..++-.+..++.|++...-. +. +
T Consensus 273 ~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~ 349 (425)
T 3pst_A 273 NKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---D 349 (425)
T ss_dssp CSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---C
T ss_pred CCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---h
Confidence 445677888999999998888754444432 234555655532 2345677778888998763110 11 1
Q ss_pred CCcHHHHHHHHh---------cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHH
Q 040749 567 LSFIETLVEYIR---------EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANA 632 (643)
Q Consensus 567 ~g~i~~Lv~lL~---------~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~ 632 (643)
...+..+++.+. ..+++....++.+|.+|...++...........+....... ...+|.+.-+..
T Consensus 350 ~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~~~~~~~a~~~~~~~~~~~~~-~~e~R~~~v~~e 423 (425)
T 3pst_A 350 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSY-GNVPRFKDIFDD 423 (425)
T ss_dssp TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHH-TTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHHHhcCHHHHHHHHHhc-ccchHHHHHHHh
Confidence 234556666666 24677888888888888876665544443222232222111 246677765544
No 268
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=54 Score=24.21 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=24.2
Q ss_pred CCccccccCcccccCc-eecCCCCccchHHHHHHHh
Q 040749 272 PHEFLCPITLEIMRDP-VIIASGQTFERESVQKWFD 306 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dP-v~~~cg~ty~r~~I~~~~~ 306 (643)
++=|.|..|...+.+- ....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcC
Confidence 4458888888777653 3345677888888777664
No 269
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.72 E-value=2.6e+02 Score=25.24 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCchhHHHHHHHHHHHhcCCCCcccHHHHHHHHH
Q 040749 143 LGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAK 200 (643)
Q Consensus 143 ~~~s~~v~e~v~~~~~q~~~a~~~~d~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~ 200 (643)
+++++|=++++..++.+.+.........-.....++..++.. .+||.+.++.+++
T Consensus 66 LnLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a---~~~DeakI~aL~~ 120 (175)
T 3lay_A 66 SPLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA---SSPDTAKINAVAK 120 (175)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHH
Confidence 679999999999888877644322211112222333333332 4477777776665
No 270
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=22.37 E-value=30 Score=27.84 Aligned_cols=47 Identities=9% Similarity=0.167 Sum_probs=35.3
Q ss_pred CCccccccCcccccCc-eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 272 PHEFLCPITLEIMRDP-VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dP-v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
++=|.|..|...+.+. ....-|..||..|..+.+ ...|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED---SPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC---CCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc---CCccccCCCcccc
Confidence 3459999999988754 455678999998875433 3579999988874
No 271
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=22.37 E-value=9.2 Score=38.39 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=32.7
Q ss_pred CCccccccCcccccCceec----CCCC--ccchHHHHHHHhcCCCCCCCcCcc
Q 040749 272 PHEFLCPITLEIMRDPVII----ASGQ--TFERESVQKWFDSNHRTCPKTRQT 318 (643)
Q Consensus 272 ~~~f~CpIc~~~m~dPv~~----~cg~--ty~r~~I~~~~~~~~~~cP~~~~~ 318 (643)
...-.||+|+....--|+. .-|+ -+|..|=..|--. ...||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~-R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV-RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC-TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec-CcCCcCCCCC
Confidence 4567899999876644554 2464 5588998888654 3479999875
No 272
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.27 E-value=2.3e+02 Score=23.71 Aligned_cols=41 Identities=22% Similarity=0.288 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHH
Q 040749 52 QKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVV 97 (643)
Q Consensus 52 ~~~~~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ 97 (643)
-|+.+.+..+|+..| |+-++... ++++++..|-.|-.+|+.
T Consensus 34 ~k~~~~D~~KRL~~L---fdkLn~~~--Ls~~v~~~L~~l~~al~~ 74 (118)
T 2yru_A 34 KKQVCDDISRRLALL---REQWAGGK--LSIPVKKRMALLVQELLH 74 (118)
T ss_dssp CHHHHHHHHHHHHHH---HHHHHHTC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHhcCC--CCHHHHHHHHHHHHHHHc
Confidence 355567888887766 67777655 588888889888888764
No 273
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=21.27 E-value=1e+02 Score=24.23 Aligned_cols=35 Identities=6% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCCCCccccccCcccccCceecC---CCCccchHHHHHH
Q 040749 269 LVIPHEFLCPITLEIMRDPVIIA---SGQTFERESVQKW 304 (643)
Q Consensus 269 ~~~~~~f~CpIc~~~m~dPv~~~---cg~ty~r~~I~~~ 304 (643)
..++.+-.|+||...= .-...| ||..|.-.|+++-
T Consensus 10 e~~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 10 EPVVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred cCCCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 3567888999997543 334444 7899999999985
No 274
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.14 E-value=1e+02 Score=22.76 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=27.8
Q ss_pred CCccccccCcccccC-ceecCCCCccchHHHHHHHhc
Q 040749 272 PHEFLCPITLEIMRD-PVIIASGQTFERESVQKWFDS 307 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-Pv~~~cg~ty~r~~I~~~~~~ 307 (643)
++=|.|..|...+.+ +....-|..||..|..+.+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred ccCCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 345899999888864 355667889999999888864
No 275
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.12 E-value=65 Score=23.69 Aligned_cols=34 Identities=6% Similarity=0.149 Sum_probs=24.2
Q ss_pred CCccccccCcccccC-ceecCCCCccchHHHHHHH
Q 040749 272 PHEFLCPITLEIMRD-PVIIASGQTFERESVQKWF 305 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-Pv~~~cg~ty~r~~I~~~~ 305 (643)
++-|.|..|...+.+ +....-|..||..|..+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFTARDDFAYCLNCFCDLY 63 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCEESSSSEECHHHHHHHT
T ss_pred CCCCccCCCCCcCCcCceEeeCCeEECHHHHHHHh
Confidence 345888888887764 4455678888888876654
No 276
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=21.03 E-value=45 Score=22.87 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=22.8
Q ss_pred ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.|.|++|...+.....+ ..-+..+-......||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhCC
Confidence 37899888877654321 111222222334579999876553
No 277
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=20.66 E-value=55 Score=27.66 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=29.1
Q ss_pred ccccccCcccccCce-ecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749 274 EFLCPITLEIMRDPV-IIASGQTFERESVQKWFDSNHRTCPKTRQTLA 320 (643)
Q Consensus 274 ~f~CpIc~~~m~dPv-~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~ 320 (643)
...|+-|.+...+.. +..-|..|...| ++|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 458999999888774 667788887765 46888888885
No 278
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.57 E-value=42 Score=24.83 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=31.5
Q ss_pred cccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC
Q 040749 275 FLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA 325 (643)
Q Consensus 275 f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~ 325 (643)
-.|+-|.+...+.++..-|.+|...| ++|-.|+.+|......
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~~f~ 47 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPEC---------FRCDLCQEVLADIGFV 47 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTT---------SBCSSSCCBCSSSCCE
T ss_pred CcCccCCCEecceEEEECcccccccC---------CEeCCCCCcCCCCccE
Confidence 46999999888877777787776544 4789999888875443
No 279
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.46 E-value=66 Score=25.19 Aligned_cols=37 Identities=24% Similarity=0.656 Sum_probs=19.4
Q ss_pred ccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749 276 LCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH 321 (643)
Q Consensus 276 ~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~ 321 (643)
.|+-|.+...+.++.+-|..|...|. .|..|+.+|..
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCccCCCEecceEEEECCccccccCC---------ccCCCCCCCCC
Confidence 45566555555555555555544332 45555555543
No 280
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.41 E-value=88 Score=22.87 Aligned_cols=35 Identities=9% Similarity=0.208 Sum_probs=26.6
Q ss_pred CCccccccCcccccC-ceecCCCCccchHHHHHHHh
Q 040749 272 PHEFLCPITLEIMRD-PVIIASGQTFERESVQKWFD 306 (643)
Q Consensus 272 ~~~f~CpIc~~~m~d-Pv~~~cg~ty~r~~I~~~~~ 306 (643)
++=|.|..|...+.+ .....-|..||..|..+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f~ 64 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFVS 64 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHHT
T ss_pred cCcCEECCCCCCCCCCccEeECCEEECHHHhHHHhc
Confidence 355899999888864 45556788999999887764
Done!