BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040750
(245 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPS|B Chain B, Crystal Structure Of The Early Endosomal Snare Complex
Length = 71
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 206 QIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
QI KDL++++ DQG ++D I+ N+++ V+ QLQ+
Sbjct: 20 QIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQR 59
>pdb|3C98|B Chain B, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 279
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 223 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 265
>pdb|1URQ|B Chain B, Crystal Structure Of Neuronal Q-Snares In Complex With
R-Snare Motif Of Tomosyn
Length = 75
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 27 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 69
>pdb|1HVV|A Chain A, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|B Chain B, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|C Chain C, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
pdb|1HVV|D Chain D, Self-Association Of The H3 Region Of Syntaxin 1a:
Implications For Snare Complex Assembly
Length = 75
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 22 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 64
>pdb|1JTH|B Chain B, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
pdb|1JTH|D Chain D, Crystal Structure And Biophysical Properties Of A Complex
Between The N-Terminal Region Of Snap25 And The Snare
Region Of Syntaxin 1a
Length = 77
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 21 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 63
>pdb|3RK2|B Chain B, Truncated Snare Complex
pdb|3RK2|F Chain F, Truncated Snare Complex
pdb|3RK3|B Chain B, Truncated Snare Complex With Complexin
pdb|3RL0|B Chain B, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|F Chain F, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|J Chain J, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|N Chain N, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|R Chain R, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|V Chain V, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Z Chain Z, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|DD Chain d, Truncated Snare Complex With Complexin (P1)
Length = 65
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 23 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65
>pdb|1N7S|B Chain B, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 68
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 23 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65
>pdb|1SFC|B Chain B, Neuronal Synaptic Fusion Complex
pdb|1SFC|F Chain F, Neuronal Synaptic Fusion Complex
pdb|1SFC|J Chain J, Neuronal Synaptic Fusion Complex
Length = 83
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 32 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74
>pdb|2XHE|B Chain B, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 279
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQL 243
EL ++ D+S LV QG ++DRI+++++ V + +Q+
Sbjct: 228 ELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQV 268
>pdb|1KIL|B Chain B, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 62
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGL 240
EL + D+++LV QG ++DRI+YN+++ V+ +
Sbjct: 23 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAV 60
>pdb|3HD7|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|B Chain B, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|F Chain F, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 109
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
EL + D+++LV QG ++DRI+YN+++ V+ + +K
Sbjct: 32 ELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74
>pdb|1GL2|B Chain B, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
++ +I KDL +++ +QG ++D I+ N+++ V + +QL +
Sbjct: 20 DINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62
>pdb|1L4A|B Chain B, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 88
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQ 230
EL + D+++LV QG ++DRI+YN++
Sbjct: 37 ELHDMFMDMAMLVESQGEMIDRIEYNVE 64
>pdb|3B5N|B Chain B, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|F Chain F, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|J Chain J, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 69
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 203 ELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGL 240
EL Q+ D+ LVI+Q VD ID N+++ V++G+
Sbjct: 21 ELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGV 58
>pdb|4FM4|A Chain A, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
pdb|4FM4|C Chain C, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
pdb|4FM4|E Chain E, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
pdb|4FM4|G Chain G, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
pdb|4FM4|I Chain I, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
pdb|4FM4|K Chain K, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
pdb|4FM4|M Chain M, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
pdb|4FM4|O Chain O, Wild Type Fe-Type Nitrile Hydratase From Comamonas
Testosteroni Ni1
Length = 209
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 17 NVSCCSRGAVT----VGLPPAWVDVSEEIATNVQRARTKMAELA 56
NV CCS + T +G+ P W E A V++ART + E+
Sbjct: 97 NVICCSLXSXTAFTIIGMAPDWYKELEYRARIVRQARTVLKEIG 140
>pdb|3B6R|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3B6R|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRB|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRB|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRE|A Chain A, Crystal Structure Of Human Brain-Type Creatine Kinase
pdb|3DRE|B Chain B, Crystal Structure Of Human Brain-Type Creatine Kinase
Length = 381
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 107 SNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVD 150
SN+ ++ + L NL +K S LKRLR QK G GVD
Sbjct: 285 SNLGTGLRAGVHIKLPNLGK--HEKFSEVLKRLRLQKRGTGGVD 326
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,767,958
Number of Sequences: 62578
Number of extensions: 190159
Number of successful extensions: 422
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 24
length of query: 245
length of database: 14,973,337
effective HSP length: 96
effective length of query: 149
effective length of database: 8,965,849
effective search space: 1335911501
effective search space used: 1335911501
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)