Query 040750
Match_columns 245
No_of_seqs 149 out of 1203
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0809 SNARE protein TLG2/Syn 100.0 3E-38 6.5E-43 265.3 23.4 215 29-245 54-271 (305)
2 KOG0810 SNARE protein Syntaxin 100.0 9.4E-34 2E-38 244.5 25.5 209 29-245 33-259 (297)
3 KOG0811 SNARE protein PEP12/VA 100.0 2.4E-28 5.2E-33 207.6 24.8 216 27-245 12-233 (269)
4 COG5325 t-SNARE complex subuni 99.9 1.4E-23 3E-28 175.6 20.1 207 27-245 29-248 (283)
5 COG5074 t-SNARE complex subuni 99.9 1.7E-23 3.6E-28 170.6 19.7 207 33-245 22-238 (280)
6 KOG0812 SNARE protein SED5/Syn 99.8 6.5E-17 1.4E-21 136.0 22.6 209 32-245 41-280 (311)
7 smart00503 SynN Syntaxin N-ter 99.6 2.6E-14 5.7E-19 108.2 13.6 110 30-140 2-117 (117)
8 cd00179 SynN Syntaxin N-termin 99.6 8.4E-14 1.8E-18 110.2 13.8 116 31-147 1-123 (151)
9 cd00193 t_SNARE Soluble NSF (N 99.5 5.8E-14 1.3E-18 93.6 7.8 58 188-245 2-59 (60)
10 PF05739 SNARE: SNARE domain; 99.5 1.4E-13 3E-18 93.0 8.1 57 189-245 1-57 (63)
11 PF00804 Syntaxin: Syntaxin; 99.5 3.5E-13 7.5E-18 99.4 10.8 95 30-125 1-103 (103)
12 smart00397 t_SNARE Helical reg 99.4 1.5E-12 3.3E-17 88.2 9.2 63 183-245 3-65 (66)
13 PF14523 Syntaxin_2: Syntaxin- 99.2 8.1E-10 1.8E-14 81.7 13.7 99 41-141 1-100 (102)
14 KOG3202 SNARE protein TLG1/Syn 97.3 0.092 2E-06 44.4 21.2 191 30-244 4-204 (235)
15 KOG3894 SNARE protein Syntaxin 94.2 0.29 6.2E-06 42.8 8.2 60 186-245 226-285 (316)
16 KOG3065 SNAP-25 (synaptosome-a 91.7 0.79 1.7E-05 39.8 7.3 57 189-245 215-271 (273)
17 PF02346 Vac_Fusion: Chordopox 85.0 5.9 0.00013 25.9 6.2 44 193-236 2-45 (57)
18 PRK04325 hypothetical protein; 77.6 20 0.00044 24.6 7.9 46 194-239 11-56 (74)
19 PF04102 SlyX: SlyX; InterPro 77.3 16 0.00035 24.6 6.6 48 192-239 4-51 (69)
20 PF09177 Syntaxin-6_N: Syntaxi 77.0 23 0.00051 25.4 7.9 60 33-101 2-61 (97)
21 PRK00295 hypothetical protein; 76.2 21 0.00046 24.1 7.5 46 194-239 7-52 (68)
22 PRK02793 phi X174 lysis protei 71.7 29 0.00063 23.7 7.5 48 192-239 8-55 (72)
23 PF11598 COMP: Cartilage oligo 71.7 8.9 0.00019 23.8 3.8 24 196-219 5-28 (45)
24 PRK00736 hypothetical protein; 69.3 32 0.00069 23.2 7.5 46 193-238 6-51 (68)
25 PF12352 V-SNARE_C: Snare regi 66.6 34 0.00073 22.5 7.2 51 194-244 10-60 (66)
26 PHA02675 ORF104 fusion protein 65.6 35 0.00077 24.0 6.1 39 198-236 36-74 (90)
27 KOG3065 SNAP-25 (synaptosome-a 65.4 23 0.00049 30.9 6.4 42 202-243 89-130 (273)
28 PRK04406 hypothetical protein; 65.3 42 0.00092 23.1 7.4 48 192-239 11-58 (75)
29 PF10267 Tmemb_cc2: Predicted 64.1 1.2E+02 0.0026 27.9 11.0 28 33-60 216-243 (395)
30 PRK02119 hypothetical protein; 60.1 53 0.0011 22.5 7.7 49 191-239 8-56 (73)
31 PF04065 Not3: Not1 N-terminal 59.0 1.1E+02 0.0024 25.9 11.1 92 38-136 7-98 (233)
32 PF03915 AIP3: Actin interacti 58.2 1.6E+02 0.0035 27.4 14.1 39 187-225 294-332 (424)
33 PHA03046 Hypothetical protein; 55.4 72 0.0016 24.5 6.7 52 185-236 77-128 (142)
34 PRK00846 hypothetical protein; 48.5 90 0.002 21.7 7.5 49 192-240 13-61 (77)
35 PF00957 Synaptobrevin: Synapt 48.4 91 0.002 21.7 7.5 43 193-235 4-46 (89)
36 KOG0811 SNARE protein PEP12/VA 46.9 1.9E+02 0.0042 25.1 17.6 64 179-242 174-237 (269)
37 PF15605 Toxin_52: Putative to 44.4 1.3E+02 0.0027 22.2 7.6 77 14-95 22-101 (103)
38 PRK09793 methyl-accepting prot 44.0 2.3E+02 0.005 26.8 10.1 55 184-238 428-482 (533)
39 PRK15041 methyl-accepting chem 43.9 2.2E+02 0.0048 27.2 9.9 56 183-238 431-486 (554)
40 PF07432 Hc1: Histone H1-like 42.5 1.5E+02 0.0032 22.4 6.9 50 78-132 3-52 (123)
41 COG1315 Uncharacterized conser 39.0 1.8E+02 0.004 27.6 8.1 35 26-60 400-434 (543)
42 PF09177 Syntaxin-6_N: Syntaxi 35.3 1.6E+02 0.0035 20.9 5.9 19 186-204 78-96 (97)
43 PF12325 TMF_TATA_bd: TATA ele 34.7 84 0.0018 23.8 4.4 31 181-211 85-115 (120)
44 PF05531 NPV_P10: Nucleopolyhe 33.3 1.6E+02 0.0036 20.3 6.8 50 37-87 5-54 (75)
45 PF01017 STAT_alpha: STAT prot 32.9 2.6E+02 0.0057 22.5 7.9 63 24-90 116-178 (182)
46 PF13779 DUF4175: Domain of un 32.7 5.5E+02 0.012 26.2 11.8 101 119-224 492-606 (820)
47 PF08700 Vps51: Vps51/Vps67; 30.4 1.8E+02 0.0039 19.9 6.2 40 186-225 45-84 (87)
48 KOG0568 Molecular chaperone (D 30.1 2.1E+02 0.0045 24.4 6.3 65 29-97 253-317 (342)
49 PF07544 Med9: RNA polymerase 29.8 1.2E+02 0.0027 21.1 4.4 29 187-215 54-82 (83)
50 PF06015 Chordopox_A30L: Chord 29.6 1.4E+02 0.003 20.3 4.2 33 31-63 22-54 (71)
51 PHA03044 IMV membrane protein; 29.1 1.6E+02 0.0034 20.2 4.4 32 31-62 24-55 (74)
52 PF14644 DUF4456: Domain of un 28.6 3.3E+02 0.0072 22.4 11.9 48 34-82 86-133 (208)
53 COG0840 Tar Methyl-accepting c 26.9 4.5E+02 0.0098 23.4 9.6 53 188-240 327-379 (408)
54 PF05008 V-SNARE: Vesicle tran 26.4 2.1E+02 0.0045 19.3 7.5 29 188-216 21-49 (79)
55 PF04799 Fzo_mitofusin: fzo-li 26.3 3.5E+02 0.0076 21.8 9.1 27 73-99 114-140 (171)
56 cd00193 t_SNARE Soluble NSF (N 25.8 1.7E+02 0.0036 18.0 6.2 47 192-238 13-59 (60)
57 PHA02892 hypothetical protein; 25.0 1.6E+02 0.0034 20.1 3.8 33 31-63 28-60 (75)
58 PF01519 DUF16: Protein of unk 24.8 2.9E+02 0.0062 20.3 7.5 44 191-234 52-95 (102)
59 TIGR01636 phage_rinA phage tra 24.7 1.1E+02 0.0023 23.4 3.6 45 12-58 35-79 (134)
60 KOG1962 B-cell receptor-associ 24.5 4.3E+02 0.0092 22.2 8.9 28 73-100 149-176 (216)
61 PF07432 Hc1: Histone H1-like 23.8 2.1E+02 0.0046 21.5 4.7 41 204-244 2-42 (123)
62 PF06246 Isy1: Isy1-like splic 23.4 1.4E+02 0.003 25.7 4.4 64 31-99 32-98 (255)
63 KOG3385 V-SNARE [Intracellular 22.8 3.4E+02 0.0073 20.4 6.8 55 189-243 33-87 (118)
64 KOG2150 CCR4-NOT transcription 21.6 7.5E+02 0.016 24.0 18.6 94 37-137 6-99 (575)
65 PF00435 Spectrin: Spectrin re 21.4 2.7E+02 0.0058 18.8 8.1 18 34-51 6-23 (105)
66 KOG3208 SNARE protein GS28 [In 21.1 5.1E+02 0.011 21.9 13.4 107 30-138 3-115 (231)
67 PF10046 BLOC1_2: Biogenesis o 20.3 3.4E+02 0.0073 19.5 5.5 27 34-60 5-31 (99)
68 COG3388 Predicted transcriptio 20.2 2.7E+02 0.0058 20.2 4.5 31 31-61 68-98 (101)
69 COG4942 Membrane-bound metallo 20.2 7.1E+02 0.015 23.2 8.8 55 187-241 40-94 (420)
No 1
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-38 Score=265.25 Aligned_cols=215 Identities=49% Similarity=0.745 Sum_probs=191.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCh
Q 040750 29 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG---PSE 105 (245)
Q Consensus 29 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~---~~~ 105 (245)
+.||.|.+.+++|+..+.+++.++.+|.+.|.+++.|+|+|.++.+.+|+.++.+|+++++.|++.|+.+...+ ++.
T Consensus 54 ~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~ 133 (305)
T KOG0809|consen 54 GLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPS 133 (305)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChH
Confidence 57999999999999999999999999999999999999999998899999999999999999999999998865 345
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCchhhhhhhhHHHHHHHHhhHH
Q 040750 106 DSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEA 185 (245)
Q Consensus 106 ~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~q~~~~~~~~~ 185 (245)
+..+++|.+..++.+++.++.+||..|..|.++++.+.++...+ +.++.+.....+++++.+..|+++|+.....+..
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~--e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~ 211 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEY--EDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEE 211 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccch--hhhccccccCcchhhhhhhhHHHHHHHHHhcchH
Confidence 66689999999999999999999999999999999998865432 2222222222346677788888888777777889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 186 FTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 186 ~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
.+++|++||.+|.+||.||++||+||+.||.+||++||||||||+++..+|+.|.++|.|
T Consensus 212 ~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~K 271 (305)
T KOG0809|consen 212 VVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHK 271 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.4e-34 Score=244.51 Aligned_cols=209 Identities=27% Similarity=0.446 Sum_probs=176.2
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 040750 29 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------- 101 (245)
Q Consensus 29 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~------- 101 (245)
..+..|+..|++|+..|.++...+.+|.++|.+.| ......+.++.+++.+...+.+..+.++.+|+.+.+.
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l-~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~ 111 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSL-HSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQ 111 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHh-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77899999999999999999999999999997654 4555667789999999999999999999999998773
Q ss_pred -CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCchhh-------hhhhh
Q 040750 102 -GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLD-------DMVFN 173 (245)
Q Consensus 102 -~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~~~ 173 (245)
++++..++++++...++++|.++|..|+.+|..|+++++.+..|+... .++... .++++. ...|+
T Consensus 112 ~~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i-----~~~~~~--~de~ie~~ie~g~~~~f~ 184 (297)
T KOG0810|consen 112 NRSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFI-----VGGEET--TDEEIEEMIESGGSEVFT 184 (297)
T ss_pred CCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hCCCcC--ChHHHHHHHHCCChHHHH
Confidence 135567899999999999999999999999999999998888875321 122111 122221 22455
Q ss_pred HHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 174 EHQMA---KLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 174 q~q~~---~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
+.-+. +....+.+|++||.+|++||++|.|||+||.|||+||+.||+|||+||+||++|.+||++|+.+|+|
T Consensus 185 ~~~i~~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~k 259 (297)
T KOG0810|consen 185 QKAIQDRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKK 259 (297)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54332 5567899999999999999999999999999999999999999999999999999999999999874
No 3
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.4e-28 Score=207.59 Aligned_cols=216 Identities=22% Similarity=0.288 Sum_probs=169.9
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChh
Q 040750 27 TVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSED 106 (245)
Q Consensus 27 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~ 106 (245)
....+++|...+.+|...|+.|+..+..|.+.+. .++++.|.++++++++.....+.++++.+...|+.+.....+.+
T Consensus 12 ~~~~~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~--~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~~~~ 89 (269)
T KOG0811|consen 12 TQEEPFDFQQLAQEIAANIQRINQQVLSLLRFLN--SLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRLESD 89 (269)
T ss_pred CcCCCCcHhHHHHHHHHHHHHHhHHHHHHHHHHH--HcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH
Confidence 4566789999999999999999999999999997 45899999999999999999999999999999999988766556
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCch-hhhhhhhHHH----HHH-H
Q 040750 107 SNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDD-LDDMVFNEHQ----MAK-L 180 (245)
Q Consensus 107 ~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~q~q----~~~-~ 180 (245)
.+..+.+..+|.++|...+++|+.+|+...++.+ ...++.........+.......... .......+.+ ..+ +
T Consensus 90 ~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek-~~~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e~~ 168 (269)
T KOG0811|consen 90 LRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREK-IPMVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNEIL 168 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc-ccccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhhhh
Confidence 6788999999999999999999999999998877 1111110000000000000000000 0000111111 123 5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 181 KKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 181 ~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
.+.+..+++|.+.|.+||.+|.|||+||+|||.||++||++||+||+||++|.+||+.|..+|.|
T Consensus 169 ~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~k 233 (269)
T KOG0811|consen 169 EYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRK 233 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999999999999975
No 4
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.92 E-value=1.4e-23 Score=175.56 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=150.5
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh-
Q 040750 27 TVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSE- 105 (245)
Q Consensus 27 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~- 105 (245)
...++|.|......|...+..++.++..+.+.+.+...+.|.+...-...|+.++..++..+..|.+.++.......+.
T Consensus 29 ~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s~~ 108 (283)
T COG5325 29 DDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQSSF 108 (283)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999988877778899999999999999988887654321111
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCC-CCCch------hhhhhhhHH
Q 040750 106 ---DSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSR-MEDDD------LDDMVFNEH 175 (245)
Q Consensus 106 ---~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~e~------~~~~~~~q~ 175 (245)
..-+-.|..-.....++.....|++.+..|.+.++.... +.... .++++ ..++.++++
T Consensus 109 ~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~------------~~~~l~eee~e~~~~~~~sq~~lqq~ 176 (283)
T COG5325 109 LQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNN------------DQHPLEEEEDEESLSSLGSQQTLQQQ 176 (283)
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhccc------------ccCchhhhhhhhhhhccchhhHHHHh
Confidence 001112223333445555555566655556555522111 11000 01111 112233333
Q ss_pred HHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 176 QMA--KLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 176 q~~--~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
.+. +.++....+.+|.++|.+|+++|.||++||+||++||.+||++|||||+||+++.+|++.|..+|.|
T Consensus 177 ~l~~ee~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~k 248 (283)
T COG5325 177 GLSNEELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEK 248 (283)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHH
Confidence 332 4566666799999999999999999999999999999999999999999999999999999999986
No 5
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.92 E-value=1.7e-23 Score=170.55 Aligned_cols=207 Identities=18% Similarity=0.302 Sum_probs=167.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHH
Q 040750 33 AWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGD-GKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRK 111 (245)
Q Consensus 33 ~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d-~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~ 111 (245)
.|......|+..+..+...++.+..+|+..|...+.+ ...++..|+..+.++..+-..++..++..++.+-.- ..++
T Consensus 22 ~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~ihl--~~k~ 99 (280)
T COG5074 22 TFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGIHL--ANKQ 99 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhcccch--hhHH
Confidence 4666999999999999999999999998765333333 346788999999999999999999999988764211 2356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCC----CCCchhhhhhhhHHHHH-----HHHh
Q 040750 112 NVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSR----MEDDDLDDMVFNEHQMA-----KLKK 182 (245)
Q Consensus 112 n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~~~q~q~~-----~~~~ 182 (245)
.+-....++|.+++++|+.++..|++..+.+..++..+ ..|..+.+ .-.|+.+.++|+|.-+. ++..
T Consensus 100 aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~I----a~P~ATEdeve~aInd~nG~qvfsqalL~anr~geAkt 175 (280)
T COG5074 100 AQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYII----AQPEATEDEVEAAINDVNGQQVFSQALLNANRRGEAKT 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhh----cCCccchHHHHHHhcccchHHHHHHHHHhcCccchHHH
Confidence 67788899999999999999999999988888776321 12222111 11123345678877553 5788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 183 SEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 183 ~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
.+.++++||++|++||++|.||.+||.||+.||.+|.+++|.|+.|++.+..+|++|++++.|
T Consensus 176 aL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~ 238 (280)
T COG5074 176 ALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDK 238 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=6.5e-17 Score=135.99 Aligned_cols=209 Identities=23% Similarity=0.358 Sum_probs=152.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc----C-CChh
Q 040750 32 PAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA----G-PSED 106 (245)
Q Consensus 32 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~----~-~~~~ 106 (245)
.+|...+..|...|.....++.+|..|.++. .-|+|.+ .+|..+|.-|++.+..+...|-+|..- + .++.
T Consensus 41 seF~~~A~~Ig~~is~T~~kl~kLa~lAKrk--s~f~Dr~---VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~ 115 (311)
T KOG0812|consen 41 SEFNKKASRIGKEISQTGAKLEKLAQLAKRK--SLFDDRP---VEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNK 115 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccccCcc---hhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccch
Confidence 4899999999999999999999999999865 4577765 579999999999999988887766542 1 1211
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhcCCCcccccc---cCCCCC-C------CCCCc---h
Q 040750 107 --SNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR-----QQKEGQDGVDLEM---NLNGGR-S------RMEDD---D 166 (245)
Q Consensus 107 --~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k-----~~~~~~~~~~~~~---~~~~~~-~------~~~~e---~ 166 (245)
..+-++++..|..++..+...|+.+-..-.+-++ +......+..... .+.+.. . +..++ +
T Consensus 116 ~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~ 195 (311)
T KOG0812|consen 116 QLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQD 195 (311)
T ss_pred HhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccc
Confidence 3467888899999999999999997544333332 2222221111111 000110 0 00000 0
Q ss_pred -----hhhhhh-hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 040750 167 -----LDDMVF-NEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGL 240 (245)
Q Consensus 167 -----~~~~~~-~q~q~~~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~ 240 (245)
.++... +++|+..+.....++++|..++..||.+|.||..||.+||+||.+|||++.|||.||+.+..+++.|.
T Consensus 196 ~~~ln~gd~~~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~ 275 (311)
T KOG0812|consen 196 VESLNMGDSSNPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAH 275 (311)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHH
Confidence 011112 24556666667889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhC
Q 040750 241 KQLQK 245 (245)
Q Consensus 241 ~eL~K 245 (245)
.+|.|
T Consensus 276 ~ellK 280 (311)
T KOG0812|consen 276 SELLK 280 (311)
T ss_pred HHHHH
Confidence 99865
No 7
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.60 E-value=2.6e-14 Score=108.21 Aligned_cols=110 Identities=24% Similarity=0.351 Sum_probs=96.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------
Q 040750 30 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGP------ 103 (245)
Q Consensus 30 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~------ 103 (245)
.||+|+..|++|+..|..|+..+..|.++|...+. +.+..+.++.+++.+..+++.+++.|+..|+.|...+.
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~-~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~ 80 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLT-PPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASG 80 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccC
Confidence 58999999999999999999999999999997653 33334678899999999999999999999999987531
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 104 SEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 140 (245)
Q Consensus 104 ~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k 140 (245)
+++.+++++++.+|..+|+++|.+|+.+|..|.+++|
T Consensus 81 ~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 81 SASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999999999998754
No 8
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.57 E-value=8.4e-14 Score=110.22 Aligned_cols=116 Identities=23% Similarity=0.363 Sum_probs=102.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------C
Q 040750 31 PPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG-------P 103 (245)
Q Consensus 31 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~-------~ 103 (245)
||+|+..|+.|+..|..|+.++..|.++|... +.+.+....++..++.+..+++.+++.++..|+.|...+ .
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~-~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~ 79 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQL-LTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNG 79 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 68999999999999999999999999999864 333333667899999999999999999999999998753 2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 040750 104 SEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQD 147 (245)
Q Consensus 104 ~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~ 147 (245)
+++.|++++++.+|.++|+++|.+|+.+|..|+++++.+..|+.
T Consensus 80 s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~ 123 (151)
T cd00179 80 SSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQL 123 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568999999999999999999999999999999999998763
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.52 E-value=5.8e-14 Score=93.56 Aligned_cols=58 Identities=40% Similarity=0.596 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 188 VEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 188 ~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
++|++++..|+.+|.+|+.||.+|+.+|.+||++||+||+|++.+..+++.|..+|.|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999976
No 10
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.49 E-value=1.4e-13 Score=92.99 Aligned_cols=57 Identities=32% Similarity=0.583 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 189 EREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 189 eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
+|+++|..|+.+|.+|++||.+|+.+|.+||++||+|+.||+.|..++..|..+|.|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999864
No 11
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.49 E-value=3.5e-13 Score=99.41 Aligned_cols=95 Identities=28% Similarity=0.483 Sum_probs=84.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------
Q 040750 30 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-------- 101 (245)
Q Consensus 30 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~-------- 101 (245)
+||.|++.+++|+..|..|...+.+|.++|.+.|..+. ++...+.+|+.++.+|+.++..|+..|+.|...
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~-~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~~~~ 79 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD-QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSEGEE 79 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 48999999999999999999999999999998887555 335688999999999999999999999999876
Q ss_pred CCChhhhHHHHHHHHHHHHHHHHH
Q 040750 102 GPSEDSNVRKNVQRSLATDLQNLS 125 (245)
Q Consensus 102 ~~~~~~~i~~n~~~~L~~~f~~~~ 125 (245)
.++++.++++|++..|+.+|+++|
T Consensus 80 ~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 80 PSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp --SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHC
Confidence 245678999999999999999986
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.42 E-value=1.5e-12 Score=88.24 Aligned_cols=63 Identities=30% Similarity=0.528 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 183 SEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 183 ~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
....+++|+++|.+|+.+|.+|+.||.+|+.+|.+||++||+|++|++.+..++..|...|.|
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999999999999999999999999999875
No 13
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=99.20 E-value=8.1e-10 Score=81.67 Aligned_cols=99 Identities=19% Similarity=0.316 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCChhhhHHHHHHHHHHH
Q 040750 41 IATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA-GPSEDSNVRKNVQRSLAT 119 (245)
Q Consensus 41 i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~-~~~~~~~i~~n~~~~L~~ 119 (245)
|...|+.|+..+..|.++.. .+|+..|+.+++.+|+.+...++.+++.+...|+.+... .+....+..+.+..+|..
T Consensus 1 is~~l~~in~~v~~l~k~~~--~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~ 78 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVN--QLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSR 78 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHH--HH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHH--HhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 57889999999999999987 348999999999999999999999999999999999987 333344677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 040750 120 DLQNLSMELRKKQSTYLKRLRQ 141 (245)
Q Consensus 120 ~f~~~~~~f~~~Q~~y~~~~k~ 141 (245)
+|..++.+|+.+|+.|.++.+.
T Consensus 79 df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 79 DFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999998765
No 14
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.092 Score=44.45 Aligned_cols=191 Identities=14% Similarity=0.215 Sum_probs=114.2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CC
Q 040750 30 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG-----PS 104 (245)
Q Consensus 30 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~-----~~ 104 (245)
.+.+|+....++.....+++..+.+...+-.. +..+.......|. ..|......+...+--+.+.+ +.
T Consensus 4 ~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~----~~~~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~~~~ide 76 (235)
T KOG3202|consen 4 SEDPFFRVKNETLKLSEEIQGLYQRRSELLKD----TGSDAEELTSVLR---RSIEEDLEDLDELISILERNPSKFGIDE 76 (235)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcccccCcH
Confidence 45679999999999999998888887777542 1111111111222 222233333333332233322 23
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCcccccccCCC---CCCCCCCch-hhhhhhhHHHHHH
Q 040750 105 EDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKR-LRQQKEGQDGVDLEMNLNG---GRSRMEDDD-LDDMVFNEHQMAK 179 (245)
Q Consensus 105 ~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~-~k~~~~~~~~~~~~~~~~~---~~~~~~~e~-~~~~~~~q~q~~~ 179 (245)
.+..-|+.....+..++..+-..|.. ..+... ++.-...+ ...++ ........+ ....
T Consensus 77 ~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~~~r~~l~~~------~~~~~~~~~~~~~~~~D~v~~~--------- 139 (235)
T KOG3202|consen 77 FELSRRRRFIDNLRTQLRQMKSKMAM--SGFANSNIRDILLGP------EKSPNLDEAMSRASGLDNVQEI--------- 139 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hccccccchhhhcCC------CCCCchhhhHHHhhccCcHHHH---------
Confidence 35567888888888888887777766 111111 01111100 00110 000111111 1110
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 180 LKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 180 ~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
.......+++-...+-.|+.+|.-+..+=.-|+.=+.+||.+||..++-++.+...+..+.+.|.
T Consensus 140 ~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~ 204 (235)
T KOG3202|consen 140 VQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLA 204 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233467888889999999999999999999999999999999999999999998888877664
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.23 E-value=0.29 Score=42.83 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 186 FTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 186 ~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
...+--+++++|++.|.|+..|=.-++.-|-+|..-||.|=.++..|..|++.|++.|.|
T Consensus 226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irk 285 (316)
T KOG3894|consen 226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRK 285 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHH
Confidence 445556899999999999999999999999999999999999999999999999999875
No 16
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=0.79 Score=39.77 Aligned_cols=57 Identities=21% Similarity=0.341 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 189 EREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 189 eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
+=...+.+|-.-+..|..|=.||+.=|..|.+.||+|+++++..-..|..++.-++|
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 344567788888999999999999999999999999999999999999999987764
No 17
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=85.00 E-value=5.9 Score=25.88 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHH
Q 040750 193 EIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTV 236 (245)
Q Consensus 193 eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~v 236 (245)
+++.++..+..|-..|.....--...++.|+|.|.+++....++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999876654
No 18
>PRK04325 hypothetical protein; Provisional
Probab=77.58 E-value=20 Score=24.61 Aligned_cols=46 Identities=11% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHH
Q 040750 194 IQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEG 239 (245)
Q Consensus 194 I~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g 239 (245)
|..||..+.-.-....+|+..|.+|.-.|++....+..-...+...
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888899999999999999999998887776666543
No 19
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=77.32 E-value=16 Score=24.64 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHH
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEG 239 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g 239 (245)
..|..||..+.-.-....+|+..|..|...||+...-+..-...+...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457778888888888888888899999999999988887766665543
No 20
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=77.00 E-value=23 Score=25.41 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040750 33 AWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA 101 (245)
Q Consensus 33 ~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~ 101 (245)
+|+...++|...|..++........+.. ... ....+..+..++...+..++..|..|...
T Consensus 2 PF~~v~~ev~~sl~~l~~~~~~~~~~~~-----~~~----~~~e~~~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 2 PFFVVKDEVQSSLDRLESLYRRWQRLRS-----DTS----SSEELKWLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-----HCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999888887765532 111 23456666777777777777777776653
No 21
>PRK00295 hypothetical protein; Provisional
Probab=76.16 E-value=21 Score=24.08 Aligned_cols=46 Identities=9% Similarity=0.264 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHH
Q 040750 194 IQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEG 239 (245)
Q Consensus 194 I~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g 239 (245)
|.+||..+.-.-....+|+..|..|...||.....+..-...+...
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999999999999998888777666554
No 22
>PRK02793 phi X174 lysis protein; Provisional
Probab=71.74 E-value=29 Score=23.68 Aligned_cols=48 Identities=6% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHH
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEG 239 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g 239 (245)
..|.+||..+.-.-....+|+..|.+|...||+....+..-...+...
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888999999999999999988887776666543
No 23
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=71.74 E-value=8.9 Score=23.78 Aligned_cols=24 Identities=29% Similarity=0.499 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhh
Q 040750 196 QVVESVNELAQIMKDLSVLVIDQG 219 (245)
Q Consensus 196 ~Ie~sI~EL~~iF~dLa~LV~eQG 219 (245)
.|...|.++++++.+|-.++.+|=
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~ 28 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQI 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999999999999998874
No 24
>PRK00736 hypothetical protein; Provisional
Probab=69.26 E-value=32 Score=23.18 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHH
Q 040750 193 EIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDE 238 (245)
Q Consensus 193 eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~ 238 (245)
.|..||..+.-.-....+|+..|..|...||....-+..-...+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888888888888899999999999999998888777666654
No 25
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=66.58 E-value=34 Score=22.45 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 194 IQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 194 I~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
|.+-...+.|.-++=.+...-...|++.|.++...+..+..++..+..-|.
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~ 60 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLK 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344445555666666677777889999999999999999999998887654
No 26
>PHA02675 ORF104 fusion protein; Provisional
Probab=65.63 E-value=35 Score=23.97 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHH
Q 040750 198 VESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTV 236 (245)
Q Consensus 198 e~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~v 236 (245)
|..+..|-.+|+.+..-...=|+.|+|.|.+.+....++
T Consensus 36 e~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 36 EERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444557888888888999999999999998776654
No 27
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.39 E-value=23 Score=30.86 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q 040750 202 NELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQL 243 (245)
Q Consensus 202 ~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL 243 (245)
.|-...=.--..+..+||+.|++||.|+.........|-.+|
T Consensus 89 ~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l 130 (273)
T KOG3065|consen 89 EESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNL 130 (273)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHH
Confidence 333444445566788999999999999999999888887766
No 28
>PRK04406 hypothetical protein; Provisional
Probab=65.25 E-value=42 Score=23.10 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHH
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEG 239 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g 239 (245)
..|..||..+.-.-....+|+..|.+|...||.....+......+...
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888999999999999999988888777666543
No 29
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=64.13 E-value=1.2e+02 Score=27.93 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 33 AWVDVSEEIATNVQRARTKMAELARAHA 60 (245)
Q Consensus 33 ~f~~~~~~i~~~i~~i~~~i~~L~~l~~ 60 (245)
.+...+.+|+.....+...+..|+....
T Consensus 216 ~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 216 KILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888876443
No 30
>PRK02119 hypothetical protein; Provisional
Probab=60.05 E-value=53 Score=22.47 Aligned_cols=49 Identities=14% Similarity=0.349 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHH
Q 040750 191 EREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEG 239 (245)
Q Consensus 191 ~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g 239 (245)
...|..||..+.-.-....+|+..|..|...||+....+..-...+...
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3567788888888888888999999999999999988888777666543
No 31
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.98 E-value=1.1e+02 Score=25.92 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHH
Q 040750 38 SEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSL 117 (245)
Q Consensus 38 ~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~n~~~~L 117 (245)
-.+|...+.+|..-|..+...+.+....+ +..-+. .+-.+.++-++.+++.=.+|..+.++++.+ -++...-.
T Consensus 7 Q~Eid~~lKkv~EG~~~F~~i~~K~~~~~---n~~QKE---K~E~DLKkEIKKLQR~RdQIK~W~~~~diK-dk~~L~e~ 79 (233)
T PF04065_consen 7 QQEIDRTLKKVQEGVEEFDEIYEKVESAT---NQNQKE---KLEADLKKEIKKLQRLRDQIKTWLSSNDIK-DKKKLLEN 79 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc---CcchHH---HHHHHHHHHHHHHHHHHHHHHHHccCcccc-cHHHHHHH
Confidence 35788889999999999999988754322 121122 333444455555554444455555545443 12223333
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040750 118 ATDLQNLSMELRKKQSTYL 136 (245)
Q Consensus 118 ~~~f~~~~~~f~~~Q~~y~ 136 (245)
++.+-..|.+|+.+.+..+
T Consensus 80 Rk~IE~~MErFK~vEkesK 98 (233)
T PF04065_consen 80 RKLIEEQMERFKVVEKESK 98 (233)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556667888888765433
No 32
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.17 E-value=1.6e+02 Score=27.40 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHH
Q 040750 187 TVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRI 225 (245)
Q Consensus 187 i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~I 225 (245)
+..-..-+..|..++.-+.+.|.-+..++.+|+..--+.
T Consensus 294 L~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~ 332 (424)
T PF03915_consen 294 LKLQEDLLSDLKEDLKKASETFALVEQCTEEQEKSPSRS 332 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 333345577788888888899999999998887654433
No 33
>PHA03046 Hypothetical protein; Provisional
Probab=55.42 E-value=72 Score=24.48 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHH
Q 040750 185 AFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTV 236 (245)
Q Consensus 185 ~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~v 236 (245)
.+|-.-.-+|+.+...+.-|..+|.....-...=|..|+|+|.+++....++
T Consensus 77 sFI~~d~~~iKd~vlRL~vlEK~~~~~i~~c~~~~~~i~RLE~H~ETlRk~M 128 (142)
T PHA03046 77 SFIHKDEMDIKDFVLRLLVLEKLFQLSIKRCKSLNNIIKRLENHTETVRKNM 128 (142)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666788899999999999999999999999999999999999876654
No 34
>PRK00846 hypothetical protein; Provisional
Probab=48.50 E-value=90 Score=21.68 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGL 240 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~ 240 (245)
..|..||..+.-......+|+..|..|...||+...-+..-.+.++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777778888888888888899999999998888887777666543
No 35
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=48.37 E-value=91 Score=21.71 Aligned_cols=43 Identities=16% Similarity=0.425 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHH
Q 040750 193 EIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATT 235 (245)
Q Consensus 193 eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ 235 (245)
.+.+|...+.++..++.+=-.-+.+-|+-|+.++...+.-...
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~ 46 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDN 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 4556666666776666666666667777777777766544433
No 36
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.90 E-value=1.9e+02 Score=25.07 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=58.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHh
Q 040750 179 KLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQ 242 (245)
Q Consensus 179 ~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~e 242 (245)
......+.|++=+.+|..+..-..+|..|-.+=+.+|..=.+-|++-..||+.+..+..+|..+
T Consensus 174 ~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~y 237 (269)
T KOG0811|consen 174 LIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKY 237 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667888899999999999999999999999999999999999999999999999999875
No 37
>PF15605 Toxin_52: Putative toxin 52
Probab=44.42 E-value=1.3e+02 Score=22.15 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=47.5
Q ss_pred cccccccCC---CCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHH
Q 040750 14 TDANVSCCS---RGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKR 90 (245)
Q Consensus 14 ~~~~~~~~~---~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~ 90 (245)
|+.+.+|+. -|.+-+.-...+.+.+.+++....-++.....|+.. ++....+...+.-+...-.+++..+..
T Consensus 22 td~D~sgt~Rdl~G~pVpKp~GgywdHlqEm~da~~GL~n~~~~le~~-----L~np~l~~~~r~~lq~~l~ea~~~l~k 96 (103)
T PF15605_consen 22 TDMDFSGTLRDLQGNPVPKPDGGYWDHLQEMQDAYRGLVNRKRTLEGS-----LKNPNLSGRTRELLQSKLNEANNYLDK 96 (103)
T ss_pred cccchHHHHHHHcCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 444555544 233222223467889999999888888777777654 234444445566666666666777777
Q ss_pred HHHHH
Q 040750 91 SEKRL 95 (245)
Q Consensus 91 ~~~~l 95 (245)
++..+
T Consensus 97 iE~~~ 101 (103)
T PF15605_consen 97 IEDFF 101 (103)
T ss_pred HHHHh
Confidence 66554
No 38
>PRK09793 methyl-accepting protein IV; Provisional
Probab=44.01 E-value=2.3e+02 Score=26.79 Aligned_cols=55 Identities=11% Similarity=0.255 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHH
Q 040750 184 EAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDE 238 (245)
Q Consensus 184 ~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~ 238 (245)
...+..=...+..|..++.++.+.+.+++..+.+|...++.|-.++.....-+++
T Consensus 428 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~ 482 (533)
T PRK09793 428 SKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQ 482 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555567888999999999999999999999999999998888776555544
No 39
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=43.88 E-value=2.2e+02 Score=27.16 Aligned_cols=56 Identities=11% Similarity=0.284 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHH
Q 040750 183 SEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDE 238 (245)
Q Consensus 183 ~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~ 238 (245)
....+..=...+.+|..++.++.+++.+++.-+.+|...++.|-.+|.....-+++
T Consensus 431 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 431 GSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677889999999999999999999999999999999998876665554
No 40
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=42.50 E-value=1.5e+02 Score=22.36 Aligned_cols=50 Identities=16% Similarity=0.318 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 78 ESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQ 132 (245)
Q Consensus 78 ~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q 132 (245)
.++...+..++..++.++..++...-....|.| .-+.+|..++.+||..-
T Consensus 3 Kdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaR-----K~sleLeKLaKefRKeS 52 (123)
T PF07432_consen 3 KDTFKKMKELLESFEADAEKAEKGNKAAGTRAR-----KASLELEKLAKEFRKES 52 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH-----HHHHHHHHHHHHHHHHH
Confidence 455666777777777777666554332333544 34456778888888753
No 41
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=38.99 E-value=1.8e+02 Score=27.63 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=28.8
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 26 VTVGLPPAWVDVSEEIATNVQRARTKMAELARAHA 60 (245)
Q Consensus 26 ~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~ 60 (245)
..++..|+|++....+...|......++.|..+..
T Consensus 400 ~~vG~dpe~~~~l~~lt~~~~~~ee~l~~Lt~~l~ 434 (543)
T COG1315 400 IDVGMDPEIVERLKELTEEISLHEERLKKLTKLLV 434 (543)
T ss_pred eEeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999998888888887776643
No 42
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=35.26 E-value=1.6e+02 Score=20.92 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040750 186 FTVEREREIQQVVESVNEL 204 (245)
Q Consensus 186 ~i~eR~~eI~~Ie~sI~EL 204 (245)
+|..|..=|..+...|..|
T Consensus 78 Ei~~Rr~fv~~~~~~i~~~ 96 (97)
T PF09177_consen 78 EISRRRQFVSAIRNQIKQM 96 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4556666666666665544
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=34.73 E-value=84 Score=23.75 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 181 KKSEAFTVEREREIQQVVESVNELAQIMKDL 211 (245)
Q Consensus 181 ~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dL 211 (245)
...++.+-++.+++..|..+|.+|.+||++.
T Consensus 85 ~t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 85 QTLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999864
No 44
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=33.28 E-value=1.6e+02 Score=20.29 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHH
Q 040750 37 VSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNI 87 (245)
Q Consensus 37 ~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~ 87 (245)
..--|+..|..+..++..|+.... .+...+.+-.++..+++.+...+..+
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~-~l~~~~~~v~~l~~klDa~~~~l~~l 54 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVD-DLESNLPDVTELNKKLDAQSAQLTTL 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 344577777777777777777664 23334444344556666555444433
No 45
>PF01017 STAT_alpha: STAT protein, all-alpha domain; InterPro: IPR013800 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the all-alpha helical domain, which consists of four long helices arranged in a bundle with a left-handed twist (coiled-coil), which in turn forms a right-handed superhelix.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 3CWG_B 1BG1_A 1Y1U_B.
Probab=32.90 E-value=2.6e+02 Score=22.48 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=36.5
Q ss_pred CCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHH
Q 040750 24 GAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKR 90 (245)
Q Consensus 24 ~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~ 90 (245)
|++..........-|+.+...|..++..+..+..+..+. +.-+|+ +......+...++.+++.
T Consensus 116 G~P~~~~LD~LQ~wfe~LAe~l~qlrqqlk~l~~l~~k~--~~~~d~--~~~~~~~L~~~v~~ll~~ 178 (182)
T PF01017_consen 116 GAPFDSSLDQLQNWFESLAEILWQLRQQLKKLEELQQKL--TYENDP--IPDQLPQLNERVTELLKN 178 (182)
T ss_dssp TSS----THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TT-T--HHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCCCc--hhhhHHHHHHHHHHHHHH
Confidence 344455556667777788889999999999999998642 222332 334444455555555443
No 46
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=32.66 E-value=5.5e+02 Score=26.16 Aligned_cols=101 Identities=20% Similarity=0.340 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccC-CCCCCCCCCchhhhhh--hh-----------HHHHHHHHhhH
Q 040750 119 TDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNL-NGGRSRMEDDDLDDMV--FN-----------EHQMAKLKKSE 184 (245)
Q Consensus 119 ~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~e~~~~~~--~~-----------q~q~~~~~~~~ 184 (245)
.++..+|.+++..-..|...+-++..+..... ..+. .+.......+++..+. +. ++.+.++...+
T Consensus 492 eEI~rLm~eLR~A~~~ym~~LAeq~~~~~~~~-~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mm 570 (820)
T PF13779_consen 492 EEIARLMQELREAMQDYMQALAEQAQRNPQQQ-DQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMM 570 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhCcccc-cCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 46888999999999999998877776431100 0000 0111111223332220 00 00111222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHH
Q 040750 185 AFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDR 224 (245)
Q Consensus 185 ~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~ 224 (245)
+.++..... ...-.+..+.+.+|+.|+.+|..+.|.
T Consensus 571 enmq~~~~q----~~~~~~~~q~m~~L~dl~r~Qq~L~D~ 606 (820)
T PF13779_consen 571 ENMQNAQPQ----QQQQQEMQQAMEELGDLLRRQQQLMDE 606 (820)
T ss_pred HhccccCCC----chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 156677888899999999999999985
No 47
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=30.44 E-value=1.8e+02 Score=19.86 Aligned_cols=40 Identities=10% Similarity=0.271 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHH
Q 040750 186 FTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRI 225 (245)
Q Consensus 186 ~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~I 225 (245)
.|=.++.++......|..|..-+..|..++.+.+..+.++
T Consensus 45 ~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 45 LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777777777777777777777665
No 48
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=30.14 E-value=2.1e+02 Score=24.41 Aligned_cols=65 Identities=12% Similarity=0.333 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 29 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQ 97 (245)
Q Consensus 29 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~ 97 (245)
++.|+|.-.-.+|++.|..+...+..=.+..... ++. .++....-.-........++.+.+.|..
T Consensus 253 gfqpewi~~~kdi~dai~qlkeai~~~rk~~g~w---pl~-rp~d~~~w~~~~~~~qddikklnk~idd 317 (342)
T KOG0568|consen 253 GFQPEWILKGKDIRDAIAQLKEAILQERKKLGEW---PLQ-RPDDKAAWKHFCENFQDDIKKLNKLIDD 317 (342)
T ss_pred CCChHHHhccchHHHHHHHHHHHHHHHHHHhCCC---CCC-CcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 6789999999999999999998886554443321 222 1222233334444444445555544433
No 49
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=29.85 E-value=1.2e+02 Score=21.06 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040750 187 TVEREREIQQVVESVNELAQIMKDLSVLV 215 (245)
Q Consensus 187 i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV 215 (245)
+.++..+|..++..+.-..++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566777778888888888877777665
No 50
>PF06015 Chordopox_A30L: Chordopoxvirus A30L protein; InterPro: IPR009257 This family consists of several short Chordopoxvirus proteins which are homologous to the A30L protein of Vaccinia virus. The vaccinia virus A30L protein is required for the association of electron-dense, granular, proteinaceous material with the concave surfaces of crescent membranes, an early step in viral morphogenesis. A30L is known to interact with the G7L protein and it has been shown that the stability of each is dependent on its association with the other [].
Probab=29.61 E-value=1.4e+02 Score=20.33 Aligned_cols=33 Identities=12% Similarity=0.166 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040750 31 PPAWVDVSEEIATNVQRARTKMAELARAHAKAL 63 (245)
Q Consensus 31 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l 63 (245)
.++|-..+..|+..|..|+.+|=.|.+..++..
T Consensus 22 d~e~~atls~i~eli~~IN~kIl~lNKKsKKn~ 54 (71)
T PF06015_consen 22 DSEFAATLSAIKELISQINLKILALNKKSKKNT 54 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhHhhccC
Confidence 578999999999999999999999999988753
No 51
>PHA03044 IMV membrane protein; Provisional
Probab=29.14 E-value=1.6e+02 Score=20.16 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=29.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040750 31 PPAWVDVSEEIATNVQRARTKMAELARAHAKA 62 (245)
Q Consensus 31 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~ 62 (245)
.++|-..+..|+..|..|+..|=.|.+..++.
T Consensus 24 d~efaAtls~ikElis~IN~kil~iNKKsKKn 55 (74)
T PHA03044 24 DSEFSATLSTIKEIISQINLKVLSINKKSKKN 55 (74)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999998865
No 52
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=28.62 E-value=3.3e+02 Score=22.38 Aligned_cols=48 Identities=17% Similarity=0.387 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHH
Q 040750 34 WVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQ 82 (245)
Q Consensus 34 f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~ 82 (245)
+......|.................|...|.|+++.+. ...+++.+..
T Consensus 86 ~~~~~~~i~~~f~~~~~~~~~~k~~h~~~LrP~LghP~-~~~eL~~L~~ 133 (208)
T PF14644_consen 86 LCEAMKAIQEEFEQQQKQWEQQKDQHEQQLRPNLGHPD-NRQELESLCE 133 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCC-CHHHHHHHHH
Confidence 34455555566666666666677777776667776654 2344444433
No 53
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=26.89 E-value=4.5e+02 Score=23.36 Aligned_cols=53 Identities=13% Similarity=0.376 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 040750 188 VEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGL 240 (245)
Q Consensus 188 ~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~ 240 (245)
.+=...+..|...+.+++.+...++.-+.+|...++.|-.++.....-++...
T Consensus 327 ~~~~~~~~~i~~~i~~i~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 379 (408)
T COG0840 327 EETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEELDDVTQENA 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334578899999999999999999999999999999999887776666544
No 54
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.44 E-value=2.1e+02 Score=19.26 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Q 040750 188 VEREREIQQVVESVNELAQIMKDLSVLVI 216 (245)
Q Consensus 188 ~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~ 216 (245)
.+|+..|..++..+.|..++...|..-|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999987665
No 55
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=26.33 E-value=3.5e+02 Score=21.84 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040750 73 DQHAIESLTQEITNILKRSEKRLQQLS 99 (245)
Q Consensus 73 ~~~~I~~~~~~i~~~~~~~~~~lk~l~ 99 (245)
+..+++....++..-++.+...|..++
T Consensus 114 L~~~Vd~~~~eL~~eI~~L~~~i~~le 140 (171)
T PF04799_consen 114 LCQQVDQTKNELEDEIKQLEKEIQRLE 140 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 56
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=25.83 E-value=1.7e+02 Score=18.02 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHH
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDE 238 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~ 238 (245)
..|..|..-..+++.+..+=+.++..=...+|+...++..+...+.+
T Consensus 13 ~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 13 ASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444455555555566555666666666666666666666665543
No 57
>PHA02892 hypothetical protein; Provisional
Probab=25.00 E-value=1.6e+02 Score=20.06 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=29.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040750 31 PPAWVDVSEEIATNVQRARTKMAELARAHAKAL 63 (245)
Q Consensus 31 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l 63 (245)
.|+|-.....|+..|..|+.+|=.|.+..++..
T Consensus 28 D~efsATls~vkElIs~IN~Kvl~INKKsKKN~ 60 (75)
T PHA02892 28 DPEFSASISLMQEIIKIINSKIIEIDKKYKKNK 60 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhhhhhccC
Confidence 588999999999999999999999999987653
No 58
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=24.80 E-value=2.9e+02 Score=20.31 Aligned_cols=44 Identities=23% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHH
Q 040750 191 EREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVAT 234 (245)
Q Consensus 191 ~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~ 234 (245)
.+.|..++..+.-..+=.+.|..=+.-||+.|+.|..-+.....
T Consensus 52 geqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ink 95 (102)
T PF01519_consen 52 GEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINK 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666667999999999876655443
No 59
>TIGR01636 phage_rinA phage transcriptional activator, RinA family. This model represents a family of phage proteins, including RinA, a transcriptional activator in staphylococcal phage phi 11. This family shows similarity to ArpU, a phage-related putative autolysin regulator, and to some sporulation-specific sigma factors.
Probab=24.65 E-value=1.1e+02 Score=23.35 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=22.6
Q ss_pred CCcccccccCCCCCcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 12 NETDANVSCCSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARA 58 (245)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l 58 (245)
+.+|+|++|...|. +..|.+..-.--.....|..+...+..|...
T Consensus 35 ~~~D~NiGg~~~~~--~~~~tE~~~ik~~~D~~l~~le~~~~~I~~~ 79 (134)
T TIGR01636 35 QEADLNAGGRGQGL--HSVVTERMVITIAMDRRLWNLERNRDAIENC 79 (134)
T ss_pred CCCCccCCccccCC--CCcHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56799998865443 2333333222222344445555555555444
No 60
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.46 E-value=4.3e+02 Score=22.21 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040750 73 DQHAIESLTQEITNILKRSEKRLQQLSA 100 (245)
Q Consensus 73 ~~~~I~~~~~~i~~~~~~~~~~lk~l~~ 100 (245)
+..+.+....+...+-++++..-+.++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~ 176 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEK 176 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666655544
No 61
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=23.77 E-value=2.1e+02 Score=21.53 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 204 LAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 204 L~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
|.+.|..|..||+.=..-++.+|...--|-..+..|..+|.
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLe 42 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELE 42 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 45556666666553333344567666667777777766664
No 62
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=23.36 E-value=1.4e+02 Score=25.71 Aligned_cols=64 Identities=22% Similarity=0.437 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHH---HHHHHHh
Q 040750 31 PPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSE---KRLQQLS 99 (245)
Q Consensus 31 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~---~~lk~l~ 99 (245)
-|.....|.++...-.=-..-+.+|.+...+.-.++++ ..+|.++.++|++|++.-. ..|+.|.
T Consensus 32 RP~~~s~v~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~-----E~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 32 RPKNVSEVKSLPEAEKWRRQIIKEISRKVTRIQDPSLG-----EFQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp --S-TTT---HHHHHHHHHHHHHHHHHHHHHHHH--S------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444455555554444444445555444432223443 3679999999999999765 4666653
No 63
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.76 E-value=3.4e+02 Score=20.44 Aligned_cols=55 Identities=18% Similarity=0.292 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q 040750 189 EREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQL 243 (245)
Q Consensus 189 eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL 243 (245)
|=++.+..|..-|.-|..+=-|++.=|..|.-+||.++...+++.........-+
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~ 87 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRL 87 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 3345566777888888888899999999999999999999999988777665443
No 64
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=21.59 E-value=7.5e+02 Score=23.98 Aligned_cols=94 Identities=10% Similarity=0.087 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 040750 37 VSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRS 116 (245)
Q Consensus 37 ~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~n~~~~ 116 (245)
+-.+|...+.+|..-|..+.....+.-..+ +. .+=+.+..++++-++++++.=.+++.+.++.|.+=++ ....
T Consensus 6 Lq~eIdr~lkKv~Egve~Fd~i~ek~~~~~-n~-----sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dIKDK~-~L~d 78 (575)
T KOG2150|consen 6 LQQEIDRCLKKVDEGVEIFDEIYEKLHSAN-NV-----SQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDIKDKD-SLLD 78 (575)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcC-Ch-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHH-HHHH
Confidence 456889999999999999999888653222 22 2233445555666666666656666666555543221 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040750 117 LATDLQNLSMELRKKQSTYLK 137 (245)
Q Consensus 117 L~~~f~~~~~~f~~~Q~~y~~ 137 (245)
-++-+-.-|.+|+.+.+..+.
T Consensus 79 ~RrlIE~~MErfK~vEke~Kt 99 (575)
T KOG2150|consen 79 NRRLIEQRMERFKAVEKEMKT 99 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 223345568888887665443
No 65
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=21.40 E-value=2.7e+02 Score=18.77 Aligned_cols=18 Identities=17% Similarity=0.302 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040750 34 WVDVSEEIATNVQRARTK 51 (245)
Q Consensus 34 f~~~~~~i~~~i~~i~~~ 51 (245)
|...++++..-|......
T Consensus 6 f~~~~~~l~~Wl~~~e~~ 23 (105)
T PF00435_consen 6 FQQEADELLDWLQETEAK 23 (105)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444333333
No 66
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.11 E-value=5.1e+02 Score=21.87 Aligned_cols=107 Identities=15% Similarity=0.258 Sum_probs=60.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CChHhH---HHHHHHHHHHHHHHHHHHHHHHHHhhc--CC
Q 040750 30 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFG-DGKEDQ---HAIESLTQEITNILKRSEKRLQQLSAA--GP 103 (245)
Q Consensus 30 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~-d~~~~~---~~I~~~~~~i~~~~~~~~~~lk~l~~~--~~ 103 (245)
.+|.|-..-...+..=..+..++....++... --+.++ |.+.+. ...+.+..+|..++.+..+-...|... .|
T Consensus 3 ~~s~we~LRkqArslE~~ld~kL~syskl~as-~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s~ 81 (231)
T KOG3208|consen 3 SSSSWEALRKQARSLENQLDSKLVSYSKLGAS-THGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASSP 81 (231)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 35567666666666666667777777777542 112232 222222 256677788888888888888888772 12
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 104 SEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKR 138 (245)
Q Consensus 104 ~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~ 138 (245)
.....+. .+...=..-|++..++|+.+-..|..+
T Consensus 82 a~~aa~~-htL~RHrEILqdy~qef~rir~n~~a~ 115 (231)
T KOG3208|consen 82 ANSAAVM-HTLQRHREILQDYTQEFRRIRSNIDAK 115 (231)
T ss_pred CCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221111 112222344667777777776665543
No 67
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=20.26 E-value=3.4e+02 Score=19.47 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 34 WVDVSEEIATNVQRARTKMAELARAHA 60 (245)
Q Consensus 34 f~~~~~~i~~~i~~i~~~i~~L~~l~~ 60 (245)
|-..+.-|...+.-....++-|.++..
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN~ 31 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMNK 31 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 555566666666666666666666654
No 68
>COG3388 Predicted transcriptional regulator [Transcription]
Probab=20.25 E-value=2.7e+02 Score=20.22 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=25.5
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040750 31 PPAWVDVSEEIATNVQRARTKMAELARAHAK 61 (245)
Q Consensus 31 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~ 61 (245)
-++|...++++...+.+|+..++.|.....+
T Consensus 68 td~~~e~ie~i~~dl~ei~e~~~~i~e~~~~ 98 (101)
T COG3388 68 TDDFPEFIEEIIGDLSEINEEAENIEEDVAK 98 (101)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888999999999999999887653
No 69
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.21 E-value=7.1e+02 Score=23.18 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHH
Q 040750 187 TVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLK 241 (245)
Q Consensus 187 i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~ 241 (245)
+..=..+|.++++.|.+..+-+..|...+.++-+-|.+|+.-+-.+.....+-..
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~ 94 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRK 94 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3344456777777777777777777777777777777777777666665554433
Done!