Query 040750
Match_columns 245
No_of_seqs 149 out of 1203
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 18:31:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040750.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040750hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 2.9E-36 1E-40 258.8 13.9 209 28-245 27-253 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 3.2E-36 1.1E-40 260.5 11.1 210 28-245 40-270 (279)
3 1fio_A SSO1 protein; four heli 100.0 4.6E-30 1.6E-34 210.9 12.5 186 30-219 3-196 (196)
4 1n7s_B Syntaxin 1A; neuronal s 99.9 1.7E-22 5.7E-27 137.8 8.8 63 183-245 3-65 (68)
5 3b5n_B Protein SSO1; snare com 99.9 1.8E-22 6.1E-27 138.0 8.8 62 184-245 2-63 (69)
6 1gl2_B Syntaxin 7; membrane pr 99.9 1.7E-22 6E-27 136.4 7.5 60 186-245 3-62 (65)
7 1jth_B Syntaxin 1A; coiled-coi 99.9 3.2E-22 1.1E-26 139.7 8.8 62 184-245 2-63 (77)
8 1sfc_B Protein (syntaxin 1A), 99.9 5.8E-22 2E-26 140.3 8.2 65 181-245 10-74 (83)
9 2nps_B Syntaxin 13, vesicle-as 99.9 1.5E-21 5E-26 134.2 7.7 58 188-245 2-59 (71)
10 3hd7_B Syntaxin-1A; membrane p 99.8 2.1E-20 7.2E-25 138.9 8.9 66 180-245 9-74 (109)
11 3c98_B Syntaxin-1A; protein co 99.8 4E-19 1.4E-23 151.9 9.6 212 28-245 39-265 (279)
12 1ez3_A Syntaxin-1A; three heli 99.7 5.5E-16 1.9E-20 118.3 14.3 114 29-143 5-126 (127)
13 1s94_A S-syntaxin; three helix 99.6 3.1E-15 1.1E-19 120.8 9.2 119 28-147 35-161 (180)
14 2dnx_A Syntaxin-12; snare, HAB 99.5 9E-13 3.1E-17 100.7 16.8 116 27-144 5-123 (130)
15 1hs7_A Syntaxin VAM3; UP-and-D 98.5 2.1E-06 7E-11 61.5 11.5 89 38-142 5-94 (97)
16 1gl2_D Syntaxin 8, vesicle tra 96.8 0.0061 2.1E-07 40.1 7.5 59 187-245 4-62 (65)
17 1n7s_D SNAP-25A; neuronal snar 96.8 0.01 3.4E-07 39.1 8.2 54 191-244 9-62 (66)
18 2nps_D Syntaxin-6; vesicle fus 96.6 0.004 1.4E-07 43.0 5.7 59 186-244 13-71 (82)
19 1sfc_D Protein (SNAP-25B), pro 96.6 0.016 5.5E-07 40.4 8.8 55 190-244 27-81 (87)
20 1nhl_A Synaptosomal-associated 96.6 0.015 5E-07 36.8 7.6 46 199-244 7-52 (54)
21 3b5n_D Protein transport prote 95.8 0.098 3.4E-06 34.2 8.9 55 191-245 9-63 (64)
22 1l4a_D S-SNAP25 fusion protein 95.7 0.028 9.6E-07 39.2 6.2 54 191-244 29-82 (87)
23 1n7s_C SNAP-25A; neuronal snar 95.6 0.18 6.1E-06 34.4 9.9 53 192-244 23-75 (79)
24 3b5n_C Protein transport prote 95.1 0.13 4.3E-06 34.3 7.6 33 212-244 32-64 (70)
25 1l4a_C S-SNAP25 fusion protein 95.0 0.072 2.5E-06 36.7 6.3 49 196-244 31-79 (83)
26 4dnd_A Syntaxin-10, SYN10; str 89.6 4.6 0.00016 29.9 10.2 64 30-100 25-88 (130)
27 2c5k_T Syntaxin TLG1, T-snare 87.4 5.7 0.0002 27.7 12.2 87 32-129 6-92 (95)
28 1gl2_C VTI1B, vesicle transpor 85.8 5.3 0.00018 25.8 8.3 47 198-244 15-61 (65)
29 3ghg_A Fibrinogen alpha chain; 78.4 7 0.00024 35.6 7.8 29 72-100 50-78 (562)
30 1x4t_A Hypothetical protein LO 70.5 5.8 0.0002 27.5 4.1 24 75-98 52-78 (92)
31 3ghg_A Fibrinogen alpha chain; 65.9 57 0.0019 29.8 10.6 32 113-144 132-163 (562)
32 3hd7_B Syntaxin-1A; membrane p 65.8 33 0.0011 24.3 10.2 66 177-242 13-78 (109)
33 1deq_A Fibrinogen (alpha chain 65.1 71 0.0024 27.9 11.1 31 72-102 53-83 (390)
34 3efg_A Protein SLYX homolog; x 64.1 22 0.00076 23.7 6.0 45 193-237 15-59 (78)
35 3swy_A Cyclic nucleotide-gated 54.8 32 0.0011 20.6 5.0 29 112-140 12-40 (46)
36 2ke4_A CDC42-interacting prote 54.6 51 0.0018 22.9 8.1 60 28-87 9-74 (98)
37 1jth_B Syntaxin 1A; coiled-coi 46.7 58 0.002 21.3 10.2 62 181-242 6-67 (77)
38 2beq_A E2 glycoprotein; viral 46.7 38 0.0013 19.3 4.1 32 194-225 1-32 (38)
39 3swf_A CGMP-gated cation chann 46.5 41 0.0014 22.2 4.8 30 112-141 14-43 (74)
40 3zx6_A HAMP, methyl-accepting 43.1 1.5E+02 0.0052 25.0 10.0 54 185-238 220-273 (341)
41 1n7s_B Syntaxin 1A; neuronal s 43.0 62 0.0021 20.5 9.5 60 181-240 8-67 (68)
42 3b5n_B Protein SSO1; snare com 41.5 67 0.0023 20.5 10.5 62 181-242 6-67 (69)
43 1qu7_A Methyl-accepting chemot 41.2 99 0.0034 24.7 7.6 51 187-237 142-192 (227)
44 2nps_B Syntaxin 13, vesicle-as 41.0 69 0.0024 20.5 9.8 59 185-243 6-64 (71)
45 1deq_A Fibrinogen (alpha chain 39.6 1.5E+02 0.0051 25.9 8.6 17 33-49 64-80 (390)
46 4dnd_A Syntaxin-10, SYN10; str 39.0 69 0.0024 23.4 5.7 18 187-204 107-124 (130)
47 1gl2_B Syntaxin 7; membrane pr 37.8 75 0.0026 20.0 8.2 57 184-240 8-64 (65)
48 3ajm_A Programmed cell death p 36.4 1.6E+02 0.0055 23.4 8.5 19 117-135 156-174 (213)
49 3n27_A Fusion glycoprotein F0, 36.0 96 0.0033 20.7 6.0 58 186-245 14-71 (80)
50 1sfc_B Protein (syntaxin 1A), 35.1 98 0.0033 20.5 10.4 65 179-243 15-79 (83)
51 2nps_C Vesicle transport throu 32.5 1.1E+02 0.0037 20.3 9.7 53 192-244 19-71 (81)
52 1dn1_B Syntaxin 1A, syntaxin b 28.4 2.4E+02 0.0082 22.9 11.3 163 73-242 78-257 (267)
53 1l4a_A Synaptobrevin; snare, s 27.6 1.3E+02 0.0045 19.7 5.8 21 182-202 33-53 (80)
54 1m1j_A Fibrinogen alpha subuni 26.7 3.5E+02 0.012 24.2 13.4 70 72-143 51-120 (491)
55 1n7s_A Vesicle-associated memb 26.4 1.2E+02 0.0041 18.8 8.1 40 192-231 4-43 (63)
56 1gl2_A Endobrevin; membrane pr 25.7 1.3E+02 0.0044 18.9 7.2 38 194-231 11-48 (65)
57 1sfc_A VAMP 2, protein (synapt 25.3 1.7E+02 0.0057 20.1 7.5 35 196-230 34-68 (96)
58 2l5g_B Putative uncharacterize 24.5 1.1E+02 0.0038 17.7 4.7 29 32-60 5-33 (42)
59 3b5n_A Synaptobrevin homolog 1 22.0 1.5E+02 0.0051 18.3 8.0 39 193-231 3-41 (61)
60 3nmd_A CGMP dependent protein 21.9 1.7E+02 0.0059 19.1 5.3 32 182-213 30-61 (72)
61 3hd7_A Vesicle-associated memb 21.9 1.9E+02 0.0065 19.5 7.5 38 193-230 6-43 (91)
62 3vlc_E Golgi to ER traffic pro 21.6 80 0.0027 21.8 3.1 63 28-90 12-78 (94)
63 2v71_A Nuclear distribution pr 21.5 2.9E+02 0.01 21.5 8.4 99 34-143 15-115 (189)
64 2qyw_A Vesicle transport throu 20.8 1.2E+02 0.0042 20.9 4.1 31 188-218 45-75 (102)
65 2xzr_A Immunoglobulin-binding 20.7 2.2E+02 0.0074 19.7 8.2 60 77-136 4-72 (114)
66 2nps_A VAMP-4, vesicle-associa 20.4 1.8E+02 0.0062 18.7 5.4 25 181-205 25-49 (74)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=2.9e-36 Score=258.82 Aligned_cols=209 Identities=21% Similarity=0.355 Sum_probs=168.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 040750 28 VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------ 101 (245)
Q Consensus 28 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~------ 101 (245)
.++||.|+..|++|+..|..|..++.+|.++|.+.+. +..+...++.+|+.++.+|+.+++.|+..|+.|...
T Consensus 27 ~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~-~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~ 105 (267)
T 1dn1_B 27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILA-SPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 105 (267)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5689999999999999999999999999999987654 444445788999999999999999999999998653
Q ss_pred --CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCchhh-------hhhh
Q 040750 102 --GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLD-------DMVF 172 (245)
Q Consensus 102 --~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~~ 172 (245)
+++.+.|++++++..|+.+|+++|..|+..|..|+++++.+..|+..+.. +.+ .++++. ..+|
T Consensus 106 ~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~-~~~-------tdeeie~~ie~g~~~~f 177 (267)
T 1dn1_B 106 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG-RTT-------TSEELEDMLESGNPAIF 177 (267)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCC-------CHHHHHHHHHTCSSCTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC-CCC-------CHHHHHHHHhCCcHHHH
Confidence 34567799999999999999999999999999999999988776422110 111 111111 1134
Q ss_pred hHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 173 NEHQM---AKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 173 ~q~q~---~~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
++..+ ..+...+.+|++||++|.+||++|.|||+||.|||+||++||++||+||+||+.|..||+.|+.+|.|
T Consensus 178 ~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k 253 (267)
T 1dn1_B 178 ASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 253 (267)
T ss_dssp TTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33211 23456788999999999999999999999999999999999999999999999999999999999975
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=3.2e-36 Score=260.50 Aligned_cols=210 Identities=19% Similarity=0.307 Sum_probs=156.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----
Q 040750 28 VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA----- 101 (245)
Q Consensus 28 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~-~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~----- 101 (245)
.+.||+|++.+++|+..|..|..++..|.++|.+.|. +.+.+.+.++.+|+.++.+|+++++.|+..|+.|...
T Consensus 40 ~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~ 119 (279)
T 2xhe_B 40 EPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQ 119 (279)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999999987654 2333333688999999999999999999999998752
Q ss_pred -------CCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCchhh-----
Q 040750 102 -------GPSE-DSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLD----- 168 (245)
Q Consensus 102 -------~~~~-~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~----- 168 (245)
+++. +.+++++++.+|+.+|++++..|+.+|..|.++++.+..++..+. .+... ++++.
T Consensus 120 ~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~----~~~~~----~ee~~~~~e~ 191 (279)
T 2xhe_B 120 QEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVV----EPSLS----DDAIQKVIEH 191 (279)
T ss_dssp HHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSS----CCCCS----STTHHHHHHH
T ss_pred hcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCC----HHHHHHHHhC
Confidence 2233 568999999999999999999999999999999998887643211 11111 11111
Q ss_pred --hhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 169 --DMVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 169 --~~~~~q~q~~~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
...|++.+.......+.+|++||++|.+||++|.|||+||.|||+||++||++||+||+||+.|..||++|+.+|.|
T Consensus 192 g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~k 270 (279)
T 2xhe_B 192 GTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQ 270 (279)
T ss_dssp C-----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC---------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344322223445667899999999999999999999999999999999999999999999999999999999975
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.96 E-value=4.6e-30 Score=210.91 Aligned_cols=186 Identities=15% Similarity=0.236 Sum_probs=144.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC--hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhh
Q 040750 30 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDG--KEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDS 107 (245)
Q Consensus 30 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~--~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~ 107 (245)
.||.|++.+++|+..|..|+.++..|.++|.+.+. +..+. +.++.+|+.++.+|+.+++.|+..|+.|...+. +.
T Consensus 3 ~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~-~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~~--~~ 79 (196)
T 1fio_A 3 DFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLT-EVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGI--HD 79 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hh
Confidence 37999999999999999999999999999997653 33222 368899999999999999999999999998653 34
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCC-CCCCchhhhhhhhHHHH-----HHHH
Q 040750 108 NVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRS-RMEDDDLDDMVFNEHQM-----AKLK 181 (245)
Q Consensus 108 ~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~q~q~-----~~~~ 181 (245)
+++++++.+|+++|++++..|+.+|..|.+++|.+..|+..+ ..+..++... .+.++......|+++.+ ..+.
T Consensus 80 r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i-~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 158 (196)
T 1fio_A 80 TNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI-IQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAK 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHcCCchhHHHHHHHhccchHHHH
Confidence 899999999999999999999999999999999988765321 1111110000 00000111224443322 1345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhh
Q 040750 182 KSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQG 219 (245)
Q Consensus 182 ~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQG 219 (245)
..+.+|++||++|.+||++|.|||+||+|||+||++||
T Consensus 159 ~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 159 TALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67889999999999999999999999999999999998
No 4
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.88 E-value=1.7e-22 Score=137.79 Aligned_cols=63 Identities=29% Similarity=0.515 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 183 SEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 183 ~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
.+.++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|..||++|+.+|.|
T Consensus 3 ~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 65 (68)
T 1n7s_B 3 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 65 (68)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999975
No 5
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.88 E-value=1.8e-22 Score=137.96 Aligned_cols=62 Identities=32% Similarity=0.473 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 184 EAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 184 ~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
+..|++|+++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|+.+|.|
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDK 63 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999975
No 6
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.87 E-value=1.7e-22 Score=136.36 Aligned_cols=60 Identities=28% Similarity=0.556 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 186 FTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 186 ~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
+|++||++|.+||++|.||++||+|||.||++||++||+||+||+.|..||++|..+|.|
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 62 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSR 62 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999975
No 7
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.87 E-value=3.2e-22 Score=139.73 Aligned_cols=62 Identities=29% Similarity=0.517 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 184 EAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 184 ~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
+.+|++||++|.+||++|.|||+||.|||+||++||++||+||+||+.|..||++|+.+|.|
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~k 63 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999964
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.86 E-value=5.8e-22 Score=140.29 Aligned_cols=65 Identities=29% Similarity=0.523 Sum_probs=62.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 181 KKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 181 ~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
...+..|++||++|.+||++|.|||+||.|||.||++||++||+||+||+.|..||++|+.+|.|
T Consensus 10 ~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 74 (83)
T 1sfc_B 10 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999975
No 9
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.85 E-value=1.5e-21 Score=134.22 Aligned_cols=58 Identities=34% Similarity=0.578 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 188 VEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 188 ~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
++||++|.+||++|.||++||.|||.||++||++||+||+||+.|..||++|..+|.|
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~k 59 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQR 59 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999964
No 10
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.82 E-value=2.1e-20 Score=138.89 Aligned_cols=66 Identities=29% Similarity=0.505 Sum_probs=62.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 180 LKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 180 ~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
++..+.++++||++|.+||++|.|||+||.|||+||++||++||+||+||++|.+||++|+.+|.|
T Consensus 9 a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~k 74 (109)
T 3hd7_B 9 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 74 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999999999999999999999999999999975
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.78 E-value=4e-19 Score=151.94 Aligned_cols=212 Identities=20% Similarity=0.304 Sum_probs=155.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 040750 28 VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------ 101 (245)
Q Consensus 28 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~------ 101 (245)
..+|++|+..+++|...|..|...+.+|.+++.+.+ .+..+.......++.++.+|+.++..+...++.+...
T Consensus 39 ~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~ 117 (279)
T 3c98_B 39 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAIL-ASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG 117 (279)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467999999999999999999999999999998765 4555666677889999999999999998887776542
Q ss_pred --CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCC-------CCCchhhhhhh
Q 040750 102 --GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSR-------MEDDDLDDMVF 172 (245)
Q Consensus 102 --~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~~~ 172 (245)
....+.+.+.++...|+..|..++..|...+..|...++....+.... ..+...... ........ .+
T Consensus 118 i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~ 193 (279)
T 3c98_B 118 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEI---TGRTTTSEELEDMLESGNPAIFAS-GI 193 (279)
T ss_dssp TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCCCCHHHHHHHHHSCCTTSSTT-TS
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCccchHHHHHHHhhhhHHHHH-HH
Confidence 123456788899999999999999999999999997766555431100 000000000 00000000 00
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 173 NEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 173 ~q~q~~~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
.. ....+...+..+++|+.+|.+|+.+|.+|+++|.+|+.+|.+||+++|+|++||+.+.++|+.|..+|.|
T Consensus 194 ~~-~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~ 265 (279)
T 3c98_B 194 IM-DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK 265 (279)
T ss_dssp CS-CSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0012234566899999999999999999999999999999999999999999999999999988888764
No 12
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.69 E-value=5.5e-16 Score=118.27 Aligned_cols=114 Identities=19% Similarity=0.325 Sum_probs=102.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------
Q 040750 29 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------- 101 (245)
Q Consensus 29 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~------- 101 (245)
++||.|+..|++|+..|..|...+.+|.++|.+.|. +....+.++.+|+.++.+|+.+++.|+..|+.|...
T Consensus 5 ~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~-~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~ 83 (127)
T 1ez3_A 5 RFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILA-SPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL 83 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 568999999999999999999999999999998764 444566789999999999999999999999998753
Q ss_pred -CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040750 102 -GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQK 143 (245)
Q Consensus 102 -~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~ 143 (245)
+++++.|+|++++..|+++|+++|.+|+.+|..|+++++.+.
T Consensus 84 ~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ri 126 (127)
T 1ez3_A 84 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRI 126 (127)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 245667999999999999999999999999999999998764
No 13
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.59 E-value=3.1e-15 Score=120.84 Aligned_cols=119 Identities=15% Similarity=0.271 Sum_probs=96.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 040750 28 VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------ 101 (245)
Q Consensus 28 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~------ 101 (245)
..+|+.|+..|++|+..|..|..++..|.++|.+.| .++.+.+.++.+|+.++.+|+.+++.|+..|+.|...
T Consensus 35 ~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L-~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~ 113 (180)
T 1s94_A 35 GGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDIL-SAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEH 113 (180)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356789999999999999999999999999999765 4666677789999999999999999999999999863
Q ss_pred --CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 040750 102 --GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQD 147 (245)
Q Consensus 102 --~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~ 147 (245)
+++++.|++++++..|+++|+++|..|+.+|..|++++|.+..|+.
T Consensus 114 ~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq~ 161 (180)
T 1s94_A 114 SNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQM 161 (180)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-----
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345669999999999999999999999999999999998887753
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9e-13 Score=100.72 Aligned_cols=116 Identities=14% Similarity=0.223 Sum_probs=104.3
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-C
Q 040750 27 TVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG-P-S 104 (245)
Q Consensus 27 ~~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~-~-~ 104 (245)
++..+|+|...++.|...|++|+..+..|.++.. .+||..|..+++++|+.+...++.+++.+...|+.|.... + +
T Consensus 5 ~~~d~~ef~~l~~~is~~I~~In~~vs~l~r~v~--~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~ 82 (130)
T 2dnx_A 5 SSGQLRDFSSIIQTCSGNIQRISQATAQIKNLMS--QLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLS 82 (130)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3567899999999999999999999999999986 3589999999999999999999999999999999999975 2 2
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040750 105 -EDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKE 144 (245)
Q Consensus 105 -~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~ 144 (245)
.+.+.++.+..+|.++|..++++|+.+|+.|.++.|....
T Consensus 83 ~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~ 123 (130)
T 2dnx_A 83 TSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIA 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 2346788899999999999999999999999999887665
No 15
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=98.51 E-value=2.1e-06 Score=61.47 Aligned_cols=89 Identities=20% Similarity=0.232 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHH
Q 040750 38 SEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIE-SLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRS 116 (245)
Q Consensus 38 ~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~-~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~n~~~~ 116 (245)
..+....|..+...|..|+++.. .+||..|+..+|..|+ .+...++.+.+++. .+..|. +..+
T Consensus 5 ~~d~~~li~t~s~niq~l~k~~~--qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l~-------------qkeR 68 (97)
T 1hs7_A 5 TKELSNLIETFAEQSRVLEKECT--KIGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILIH-------------QNGK 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HTTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHHH-------------HCHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH--HhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc-------------hhhH
Confidence 35666777888888889999886 4699999999999999 99999999999988 333331 4689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040750 117 LATDLQNLSMELRKKQSTYLKRLRQQ 142 (245)
Q Consensus 117 L~~~f~~~~~~f~~~Q~~y~~~~k~~ 142 (245)
|..+|..+...|+.+|+.|.++.+.-
T Consensus 69 L~~dF~~l~~~fQ~~qr~y~ek~~e~ 94 (97)
T 1hs7_A 69 LSADFKNLKTKYQSLQQSYNQRKSLF 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999987654
No 16
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.82 E-value=0.0061 Score=40.09 Aligned_cols=59 Identities=10% Similarity=0.219 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 187 TVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 187 i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
+++-.+.+-.|...|..|+.|-.+|+.=|..|..+||.|+..++.+...+..+...+.+
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678899999999999999999999999999999999999999999999887653
No 17
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.76 E-value=0.01 Score=39.13 Aligned_cols=54 Identities=20% Similarity=0.285 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 191 EREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 191 ~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
.+.+-.|...|..|+.|-.+|+.=|..|..+||+|+..++.+...+..+...+.
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999988765
No 18
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.61 E-value=0.004 Score=43.00 Aligned_cols=59 Identities=12% Similarity=0.276 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 186 FTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 186 ~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
.+++-.+.+-.|..+|..|..|-.+|+.=|.+|..+||.++..++.+...+..+...+.
T Consensus 13 ~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~ 71 (82)
T 2nps_D 13 MGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLA 71 (82)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677889999999999999999999999999999999999999999999887764
No 19
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.60 E-value=0.016 Score=40.39 Aligned_cols=55 Identities=20% Similarity=0.270 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 190 REREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 190 R~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
-.+.+..|...|..|+.|-.+|+.=|..|..+||+|+..++.+...+..++..+.
T Consensus 27 qD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~ 81 (87)
T 1sfc_D 27 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999999999999999999987765
No 20
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.57 E-value=0.015 Score=36.81 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 199 ESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 199 ~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
+-+.|-.++=......+..||+.|++|+.+++.+..++..|...|.
T Consensus 7 ~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 7 GLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3445555566667778899999999999999999999999998875
No 21
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.85 E-value=0.098 Score=34.16 Aligned_cols=55 Identities=13% Similarity=0.213 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 191 EREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 191 ~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
.+.+.+|...+.-|+.|=.+|+.=|..|-++||+|+..++.+...+..++..|.|
T Consensus 9 D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 9 DRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3567788999999999999999999999999999999999999999999988764
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.68 E-value=0.028 Score=39.16 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 191 EREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 191 ~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
.+.+..|...+..|..|=.+|+.=|..|.++||+|+..++.+...+..++..+.
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~ 82 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999887765
No 23
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=95.60 E-value=0.18 Score=34.37 Aligned_cols=53 Identities=19% Similarity=0.323 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
+-+++.-+-+.|-.++=.......+.||+.|++|+.++..+..++..|...|.
T Consensus 23 ~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~ 75 (79)
T 1n7s_C 23 ESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLK 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 34445555566666677778888999999999999999999999999998774
No 24
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.13 E-value=0.13 Score=34.28 Aligned_cols=33 Identities=6% Similarity=0.055 Sum_probs=29.1
Q ss_pred hhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 212 SVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 212 a~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
..++..||+.|++||.|++.+..+...|..+|.
T Consensus 32 l~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~ 64 (70)
T 3b5n_C 32 LGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVA 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999988774
No 25
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.99 E-value=0.072 Score=36.70 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 196 QVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 196 ~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
+.-+-+.+-.+.=..=..+...||+.|+|||.+++....+...|..+|.
T Consensus 31 r~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~ 79 (83)
T 1l4a_C 31 RMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455556667889999999999999999999998887764
No 26
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=89.55 E-value=4.6 Score=29.93 Aligned_cols=64 Identities=20% Similarity=0.218 Sum_probs=37.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040750 30 LPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSA 100 (245)
Q Consensus 30 ~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~ 100 (245)
...+|+...++|...|.+++.....-.++.. ..++. ...++..++.++...+..++-.|..|..
T Consensus 25 ~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~--~~~~~-----s~~E~~~~~~EL~~~l~sie~dLeDLe~ 88 (130)
T 4dnd_A 25 LEDPFFVVRGEVQKAVNTARGLYQRWCELLQ--ESAAV-----GREELDWTTNELRNGLRSIEWDLEDLEE 88 (130)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999999998877655432 11111 1134555555566666666666655544
No 27
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=87.40 E-value=5.7 Score=27.73 Aligned_cols=87 Identities=9% Similarity=0.270 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHH
Q 040750 32 PAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRK 111 (245)
Q Consensus 32 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~ 111 (245)
.+|+....++...|..+...+.. + .+. .++..+.++.....++...+..+...|.-+++. +..+..-|+
T Consensus 6 DPF~~V~~D~~~ql~~l~~~~~~-------~--~~~-~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~-~~~EI~~Rk 74 (95)
T 2c5k_T 6 DPFQQVVKDTKEQLNRINNYITR-------H--NTA-GDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD-ENEDVSGRE 74 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH-------T--CCC---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-TTCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH-------c--cCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 56999999999999999988554 1 111 223556778888888888888888888887766 445555678
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040750 112 NVQRSLATDLQNLSMELR 129 (245)
Q Consensus 112 n~~~~L~~~f~~~~~~f~ 129 (245)
.....+..++..+-..|.
T Consensus 75 ~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 75 AQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888888777766554
No 28
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=85.80 E-value=5.3 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 198 VESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 198 e~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
.+-+.|--+|=.+...-+..|+|.|.++...+..+..++..|...|+
T Consensus 15 ~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 15 HRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 34444555555666667889999999999999999999999998875
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=78.42 E-value=7 Score=35.64 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040750 72 EDQHAIESLTQEITNILKRSEKRLQQLSA 100 (245)
Q Consensus 72 ~~~~~I~~~~~~i~~~~~~~~~~lk~l~~ 100 (245)
.++.-|.+.-..+++.+.++++.+..+.+
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdlsK 78 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEYQK 78 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHHHh
Confidence 35566777777777777777777777744
No 30
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=70.49 E-value=5.8 Score=27.48 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHH
Q 040750 75 HAIESLTQEITNILKRSE---KRLQQL 98 (245)
Q Consensus 75 ~~I~~~~~~i~~~~~~~~---~~lk~l 98 (245)
.+|.+|.++|++|+++-. ..|+.|
T Consensus 52 ~~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 52 FRIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999998754 456555
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=65.87 E-value=57 Score=29.79 Aligned_cols=32 Identities=6% Similarity=0.159 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040750 113 VQRSLATDLQNLSMELRKKQSTYLKRLRQQKE 144 (245)
Q Consensus 113 ~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~ 144 (245)
....|...+.++..+-+++....--+++....
T Consensus 132 nIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 132 HIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34667777777777777777666666655543
No 32
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=65.80 E-value=33 Score=24.28 Aligned_cols=66 Identities=8% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHh
Q 040750 177 MAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQ 242 (245)
Q Consensus 177 ~~~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~e 242 (245)
+..++.....+..=++.|.+|..-..+|+.|..+=+.+|..=...+++...||+.+...+.+|...
T Consensus 13 l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~y 78 (109)
T 3hd7_B 13 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667888888999999999999999999999999999999999999999999999999754
No 33
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=65.13 E-value=71 Score=27.90 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=21.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 040750 72 EDQHAIESLTQEITNILKRSEKRLQQLSAAG 102 (245)
Q Consensus 72 ~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~ 102 (245)
.++..|++....++..+..++..|..+.+..
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNS 83 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 3566677777777777777777777776643
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.10 E-value=22 Score=23.71 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHH
Q 040750 193 EIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVD 237 (245)
Q Consensus 193 eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve 237 (245)
.|..||..+.-.-....+|+..|..|...||+...-+..-...+.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777778888888888898888888887766555443
No 35
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=54.77 E-value=32 Score=20.55 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 112 NVQRSLATDLQNLSMELRKKQSTYLKRLR 140 (245)
Q Consensus 112 n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k 140 (245)
+....|..+|..++.+|.+.|..-+.|+-
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlKqRit 40 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMKQRLS 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999999999987776654
No 36
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=54.60 E-value=51 Score=22.93 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=37.2
Q ss_pred CCCCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCCChHhHHHHHHHHHHHHHH
Q 040750 28 VGLPPA-----WVDVSEEIATNVQRARTKMAELARAHAKAL-MPSFGDGKEDQHAIESLTQEITNI 87 (245)
Q Consensus 28 ~~~~~~-----f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l-~~~~~d~~~~~~~I~~~~~~i~~~ 87 (245)
.++||+ ....+.++...|.+-...-.-|.+++.-+. .|.|+|......+|......|..+
T Consensus 9 s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L 74 (98)
T 2ke4_A 9 SHLPPEQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERL 74 (98)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHH
Confidence 456664 566667777777776666666666654222 278888877766666555444443
No 37
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=46.69 E-value=58 Score=21.25 Aligned_cols=62 Identities=8% Similarity=0.141 Sum_probs=55.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHh
Q 040750 181 KKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQ 242 (245)
Q Consensus 181 ~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~e 242 (245)
......|..=+..|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|...
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778899999999999999999999999999999999999999999999999864
No 38
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=46.68 E-value=38 Score=19.29 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHH
Q 040750 194 IQQVVESVNELAQIMKDLSVLVIDQGTIVDRI 225 (245)
Q Consensus 194 I~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~I 225 (245)
|.++.+++..++.-+.-+...|.+||..|...
T Consensus 1 i~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 1 XSQIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34567788888888889999999999988754
No 39
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=46.51 E-value=41 Score=22.20 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040750 112 NVQRSLATDLQNLSMELRKKQSTYLKRLRQ 141 (245)
Q Consensus 112 n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~ 141 (245)
+....|..+|..++.+|...|..-+.|+-.
T Consensus 14 ~sld~LQTrfARLLaEy~ssQ~KLKqRit~ 43 (74)
T 3swf_A 14 SSVDLLQTRFARILAEYESMQQKLKQRLTK 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999999887776543
No 40
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=43.14 E-value=1.5e+02 Score=25.01 Aligned_cols=54 Identities=11% Similarity=0.291 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHH
Q 040750 185 AFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDE 238 (245)
Q Consensus 185 ~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~ 238 (245)
..+..=...+..|...+.++...+.+++.-+.+|...++.|-.++.....-++.
T Consensus 220 ~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~ 273 (341)
T 3zx6_A 220 TLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 273 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667888999999999999999999999999999998888766555444
No 41
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=42.98 E-value=62 Score=20.55 Aligned_cols=60 Identities=7% Similarity=0.138 Sum_probs=53.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 040750 181 KKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGL 240 (245)
Q Consensus 181 ~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~ 240 (245)
......|..=++.|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556777788899999999999999999999999999999999999999999998885
No 42
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=41.50 E-value=67 Score=20.48 Aligned_cols=62 Identities=10% Similarity=0.170 Sum_probs=55.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHh
Q 040750 181 KKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQ 242 (245)
Q Consensus 181 ~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~e 242 (245)
......|..=++.|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|...
T Consensus 6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (69)
T 3b5n_B 6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKS 67 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455677778899999999999999999999999999999999999999999999999763
No 43
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=41.24 E-value=99 Score=24.67 Aligned_cols=51 Identities=12% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHH
Q 040750 187 TVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVD 237 (245)
Q Consensus 187 i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve 237 (245)
+.+=...+..|...+.++..++.+++..+.+|...++.|-.++.....-++
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~ 192 (227)
T 1qu7_A 142 VESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQ 192 (227)
T ss_dssp HHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445566777778888888888888888888888888777766544443
No 44
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=41.05 E-value=69 Score=20.52 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q 040750 185 AFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQL 243 (245)
Q Consensus 185 ~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL 243 (245)
..|..=+..|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|...-
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 64 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666678899999999999999999999999999999999999999999999998754
No 45
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=39.58 E-value=1.5e+02 Score=25.88 Aligned_cols=17 Identities=0% Similarity=0.081 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 040750 33 AWVDVSEEIATNVQRAR 49 (245)
Q Consensus 33 ~f~~~~~~i~~~i~~i~ 49 (245)
+|...+++++..|..+.
T Consensus 64 ~~~~rIe~L~~~L~~~s 80 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQ 80 (390)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 46
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=39.05 E-value=69 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040750 187 TVEREREIQQVVESVNEL 204 (245)
Q Consensus 187 i~eR~~eI~~Ie~sI~EL 204 (245)
|..|.+=|..+...|.++
T Consensus 107 i~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 107 LQERKVFVERMREAVQEM 124 (130)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 47
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=37.82 E-value=75 Score=19.99 Aligned_cols=57 Identities=12% Similarity=0.208 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHH
Q 040750 184 EAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGL 240 (245)
Q Consensus 184 ~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~ 240 (245)
...|..=++.|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 8 ~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 8 ESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345666677889999999999999999999999999999999999999999998875
No 48
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=36.41 E-value=1.6e+02 Score=23.41 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040750 117 LATDLQNLSMELRKKQSTY 135 (245)
Q Consensus 117 L~~~f~~~~~~f~~~Q~~y 135 (245)
..+.|..-..+|-..-..|
T Consensus 156 ~KreFVkySKrFS~TLKeY 174 (213)
T 3ajm_A 156 QKKEFVKYSKSFSDTLKTY 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHhhHHHHHH
Confidence 3344444444444444433
No 49
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=36.00 E-value=96 Score=20.67 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750 186 FTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245 (245)
Q Consensus 186 ~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K 245 (245)
-|+.-++.|.+|-.+...+.-...-+..-|..+|.+ .|--|+..|....+....+|.|
T Consensus 14 SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~ 71 (80)
T 3n27_A 14 SIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHH
Confidence 467777888888888888887778888888888876 3555666788888887777654
No 50
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=35.07 E-value=98 Score=20.49 Aligned_cols=65 Identities=8% Similarity=0.147 Sum_probs=57.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhh
Q 040750 179 KLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQL 243 (245)
Q Consensus 179 ~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL 243 (245)
.+......|..=++.|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|...-
T Consensus 15 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455667888888999999999999999999999999999999999999999999999998653
No 51
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=32.47 E-value=1.1e+02 Score=20.27 Aligned_cols=53 Identities=11% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQ 244 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~ 244 (245)
.-|.+-..-+.|=.+|=.++..=...|.|.|.+....+..+..++..+...|.
T Consensus 19 ~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~ 71 (81)
T 2nps_C 19 RRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILT 71 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 34444555555666666666667789999999999999999999999988774
No 52
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=28.42 E-value=2.4e+02 Score=22.94 Aligned_cols=163 Identities=12% Similarity=0.212 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH------------HhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 73 DQHAIESLTQEITNILKRSEKRLQQ------------LSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 140 (245)
Q Consensus 73 ~~~~I~~~~~~i~~~~~~~~~~lk~------------l~~~~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k 140 (245)
+..+|..+...|...++.+...+.. +... .-..+ ......+..+|+.+-..|+...+ .+++
T Consensus 78 l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~~~~~~e~Rirk~---q~~~L-~~~f~~~m~~yq~~Q~~y~e~~k---~~i~ 150 (267)
T 1dn1_B 78 LMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKT---QHSTL-SRKFVEVMSEYNATQSDYRERCK---GRIQ 150 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3456666666666666666554321 1111 11122 22345677889999888888644 3333
Q ss_pred hhhc--CCCccccccc---CCCCCCCCCCchhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 040750 141 QQKE--GQDGVDLEMN---LNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLV 215 (245)
Q Consensus 141 ~~~~--~~~~~~~~~~---~~~~~~~~~~e~~~~~~~~q~q~~~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV 215 (245)
++.. ++...+-++. .+|........-+.+.....+.+..+......|..=+..|..|..-..+|+.|..+=+.+|
T Consensus 151 Rq~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~i 230 (267)
T 1dn1_B 151 RQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMI 230 (267)
T ss_dssp HHHHHTTCCCCHHHHHHHHHTCSSCTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGG
T ss_pred hHhhccCCCCCHHHHHHHHhCCcHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3332 2221111110 1222111111000011222333455566677888889999999999999999999999999
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHh
Q 040750 216 IDQGTIVDRIDYNIQNVATTVDEGLKQ 242 (245)
Q Consensus 216 ~eQGe~ID~Ie~Nve~a~~~ve~g~~e 242 (245)
..=...|.....||+.+...+.+|...
T Consensus 231 d~Ie~nv~~a~~~v~~~~~~l~kA~~~ 257 (267)
T 1dn1_B 231 DRIEYNVEHAVDYVERAVSDTKKAVKY 257 (267)
T ss_dssp GCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888888888888888888777654
No 53
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=27.62 E-value=1.3e+02 Score=19.71 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 040750 182 KSEAFTVEREREIQQVVESVN 202 (245)
Q Consensus 182 ~~~~~i~eR~~eI~~Ie~sI~ 202 (245)
.+...+.+|.+.|..|+.--.
T Consensus 33 ~NI~~vLeRGekLd~L~~kt~ 53 (80)
T 1l4a_A 33 VNVDKVLERDSKISELDDRAD 53 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHH
Confidence 344455555555555444333
No 54
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=26.66 E-value=3.5e+02 Score=24.24 Aligned_cols=70 Identities=14% Similarity=0.148 Sum_probs=42.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040750 72 EDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQK 143 (245)
Q Consensus 72 ~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~ 143 (245)
.++.-|...-..++..+.++++.|..+.+...+.. ...+++...|..++..+ +.....-..|..-++++.
T Consensus 51 rLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~-~y~~~~~~~lk~~~~q~-~dndn~~~e~S~eLe~ri 120 (491)
T 1m1j_A 51 RMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSN-RVIVETINILKPGLEGA-QQLDENYGHVSTELRRRI 120 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHH
Confidence 46778888888999999999999999887654332 22333444444443332 333334444555555544
No 55
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=26.38 E-value=1.2e+02 Score=18.82 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHH
Q 040750 192 REIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQN 231 (245)
Q Consensus 192 ~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~ 231 (245)
..|.++...+.|+..|+.+=-.-|.+-|+-||.++.--+.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~ 43 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3466777777777777777777788888888887776664
No 56
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.69 E-value=1.3e+02 Score=18.90 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHH
Q 040750 194 IQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQN 231 (245)
Q Consensus 194 I~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~ 231 (245)
|.+|...+.|+..|+.+==.-|.+-|+-||.+..--+.
T Consensus 11 l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~ 48 (65)
T 1gl2_A 11 VRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555555555555566666666666555443
No 57
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.27 E-value=1.7e+02 Score=20.06 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHH
Q 040750 196 QVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQ 230 (245)
Q Consensus 196 ~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve 230 (245)
+|...|.|+..|+.+==.-|.+-|+-||.++.-.+
T Consensus 34 ~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse 68 (96)
T 1sfc_A 34 QTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34444444444444444445555555555544443
No 58
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=24.49 E-value=1.1e+02 Score=17.74 Aligned_cols=29 Identities=3% Similarity=0.242 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040750 32 PAWVDVSEEIATNVQRARTKMAELARAHA 60 (245)
Q Consensus 32 ~~f~~~~~~i~~~i~~i~~~i~~L~~l~~ 60 (245)
.+.++.++.|...|.+....|.+|++...
T Consensus 5 ~~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 5 EELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777888888877777776654
No 59
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=22.01 E-value=1.5e+02 Score=18.30 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHH
Q 040750 193 EIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQN 231 (245)
Q Consensus 193 eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~ 231 (245)
.|.+|...+.|+..|+.+==.-|.+-|+-||.+..--+.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356677777777777777777777888888777766654
No 60
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.92 E-value=1.7e+02 Score=19.05 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040750 182 KSEAFTVEREREIQQVVESVNELAQIMKDLSV 213 (245)
Q Consensus 182 ~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~ 213 (245)
...+.|+.|..-|..+++.|.+.......|-.
T Consensus 30 ~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 30 EKIEELRQRDALIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777776666543
No 61
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=21.92 E-value=1.9e+02 Score=19.48 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHH
Q 040750 193 EIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQ 230 (245)
Q Consensus 193 eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve 230 (245)
.+.++...+.|+..++.+==.-|-+-|+-||.++.-.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~ 43 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRAD 43 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 34455555555555555555555555555555555444
No 62
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=21.55 E-value=80 Score=21.81 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=28.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC----hHhHHHHHHHHHHHHHHHHH
Q 040750 28 VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDG----KEDQHAIESLTQEITNILKR 90 (245)
Q Consensus 28 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~----~~~~~~I~~~~~~i~~~~~~ 90 (245)
-..-+.|++.+.--+....+.+....++.++....-..+..|. ..++++++.+..++..+-+.
T Consensus 12 ~~~~~~~~~~v~p~s~~~~~~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~ 78 (94)
T 3vlc_E 12 NKYHEKWISKFAPGNELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDE 78 (94)
T ss_dssp --------------CCTTHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred hhHHHHHHHHhCcccHhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777766666666777777777777654323344554 23567777776666554433
No 63
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=21.51 E-value=2.9e+02 Score=21.51 Aligned_cols=99 Identities=15% Similarity=0.169 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--hhhhHHH
Q 040750 34 WVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPS--EDSNVRK 111 (245)
Q Consensus 34 f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~--~~~~i~~ 111 (245)
|-..+......+..+...+.++..- ++++..+++.-.....+..+.+...+..+.....+ .......
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqes-----------SrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEG-----------SRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555444332 22344444444444444444444444444321100 0001112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040750 112 NVQRSLATDLQNLSMELRKKQSTYLKRLRQQK 143 (245)
Q Consensus 112 n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~ 143 (245)
+...+....++.-+..++.....+..+++.-.
T Consensus 84 ~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 84 AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22234455566666666666666666655443
No 64
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.83 E-value=1.2e+02 Score=20.92 Aligned_cols=31 Identities=10% Similarity=0.154 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Q 040750 188 VEREREIQQVVESVNELAQIMKDLSVLVIDQ 218 (245)
Q Consensus 188 ~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQ 218 (245)
.+|...|.+++..+.|..+|..+|..=|..-
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3577788889999999999988887766653
No 65
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=20.73 E-value=2.2e+02 Score=19.70 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 040750 77 IESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQ---------RSLATDLQNLSMELRKKQSTYL 136 (245)
Q Consensus 77 I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i~~n~~---------~~L~~~f~~~~~~f~~~Q~~y~ 136 (245)
|++...+|-..+-.+...+..+.....+.+.++..|.+ ...+..++.-..+..+.|+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ 72 (114)
T 2xzr_A 4 IEDKIEEILSKIYHIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQIN 72 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHH
Confidence 34444444444444444444444322222333433333 1344444444445555444433
No 66
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=20.42 E-value=1.8e+02 Score=18.68 Aligned_cols=25 Identities=12% Similarity=0.312 Sum_probs=15.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 040750 181 KKSEAFTVEREREIQQVVESVNELA 205 (245)
Q Consensus 181 ~~~~~~i~eR~~eI~~Ie~sI~EL~ 205 (245)
..+...+.+|.+.|..|..--.+|.
T Consensus 25 ~~NI~~vL~RgekLd~L~~ks~~L~ 49 (74)
T 2nps_A 25 QENITKVIERGERLDELQDKSESLS 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455566777776666666555554
Done!