BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040751
(405 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 128/307 (41%), Gaps = 54/307 (17%)
Query: 104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA---------------RQMIKM 148
TPLHVA+ GH IV L++R P N ++E+ + A + +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLE 208
+ T LH A + ++VK+L + + + A G TPL++AA + VLALLE
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-ATTAGHTPLHIAAREGHVETVLALLE 134
Query: 209 NSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGM 268
S + G T LH AA K+ V A + G TP+H A +H
Sbjct: 135 KEASQACMTKKGFTPLHVAA-KYGKVRVAELLLERDAHPNAAGKN--GLTPLHVAVHHNN 191
Query: 269 YWINRF------------YGNYGTVNLLLETDQ----------SASNIADKDRKMTALHL 306
I + + Y +++ + +Q S A+ + +T LHL
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251
Query: 307 AAGQGNAEIVDAIISKNPECYELVDNRGWNFLH------YAVVTRSLINEG---DA---M 354
AA +G+AE+V ++SK L + G LH + V LI G DA M
Sbjct: 252 AAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 355 GNTPLHV 361
G TPLHV
Sbjct: 311 GYTPLHV 317
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 130/332 (39%), Gaps = 85/332 (25%)
Query: 58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGI 117
L +T LHI E V +E + C + KG TPLHVAAK+G +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 118 VTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP 177
L+ER H N ++G+ T LH AV H N+D+VK+L
Sbjct: 162 AELLLERDA---HPNAAGKNGL---------------TPLHVAVHHNNLDIVKLLLPRGG 203
Query: 178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTA 237
A N G TPL++AA+ ++ +LL+ S + E G T LH AA +
Sbjct: 204 SPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE------- 255
Query: 238 XXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADK 297
G+ V LLL + Q+ N+ +K
Sbjct: 256 --------------------------------------GHAEMVALLL-SKQANGNLGNK 276
Query: 298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYA-------VVTRSLINE 350
+T LHL A +G+ + D +I K+ + G+ LH A +V L ++
Sbjct: 277 S-GLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334
Query: 351 GDA-----MGNTPLHVLAAVRRNEFYDVMIRN 377
D +G +PLH A + ++++N
Sbjct: 335 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 366
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 66/254 (25%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
V+E+L PSLLLQ + G PLH + F I +FL+ + EN L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSD 201
++ T H A N++VVK L PD N G T L++A + +
Sbjct: 67 ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIH 261
+ L+EN SV D++ P+H
Sbjct: 122 VSQFLIENGASVR------------------------------------IKDKFNQIPLH 145
Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGQGNAEIVDAII 320
AA G+ + LL +SA N DK H LA G G+A ++ ++
Sbjct: 146 RAAS---------VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 321 SKNPECYELVDNRG 334
K Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 66/254 (25%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
V+E+L PSLLLQ + G PLH + F I +FL+ + EN L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSD 201
++ T H A N++VVK L PD N G T L++A + +
Sbjct: 67 ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIH 261
+ L+EN SV D++ P+H
Sbjct: 122 VSQFLIENGASVR------------------------------------IKDKFNQIPLH 145
Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGQGNAEIVDAII 320
AA G+ + LL +SA N DK H LA G G+A ++ ++
Sbjct: 146 RAAS---------VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 321 SKNPECYELVDNRG 334
K Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/254 (25%), Positives = 97/254 (38%), Gaps = 66/254 (25%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
V+E+L PSLLLQ + G PLH + F I +FL+ + EN L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLYMAAESRSSD 201
++ T H A N++VVK L PD N G T L++A + +
Sbjct: 67 ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFE 121
Query: 202 MVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIH 261
+ L+EN SV D++ P+H
Sbjct: 122 VSQFLIENGASVR------------------------------------IKDKFNQIPLH 145
Query: 262 YAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH-LAAGQGNAEIVDAII 320
AA G+ + LL +SA N DK H LA G G+A ++ ++
Sbjct: 146 RAAS---------VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL--LV 194
Query: 321 SKNPECYELVDNRG 334
K Y+LVDN+G
Sbjct: 195 EKYGAEYDLVDNKG 208
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 19/127 (14%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA+ GH +V L+E A + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAA 43
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
+ +++VVK+L + D + + +G+TPL++AA + ++V LLE V+ + NG+
Sbjct: 44 RNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 222 TALHAAA 228
T LH AA
Sbjct: 103 TPLHLAA 109
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXX 245
+G+TPL++AA + ++V LLE V+ + NG+T LH AA L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL---EVVKLLLEA 57
Query: 246 XXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH 305
D+ G TP+H AA +G + V LLLE N DK+ + T LH
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEV---------VKLLLEAGADV-NAKDKNGR-TPLH 106
Query: 306 LAAGQGNAEIVDAII 320
LAA G+ E+V ++
Sbjct: 107 LAARNGHLEVVKLLL 121
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A + +++VVK+L + D + + +G+TPL++AA + ++V LLE V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 215 HEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
+ NG+T LH AA L D+ G TP+H AA +G +
Sbjct: 63 AKDKNGRTPLHLAARNGHL---EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV--- 116
Query: 275 YGNYGTVNLLLET 287
V LLLE
Sbjct: 117 ------VKLLLEA 123
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 26/135 (19%)
Query: 77 ENVSTEFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENE 133
N E V+ +LE VNAK G TPLH+AA+ GH +V L+E
Sbjct: 11 RNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLLE---------- 56
Query: 134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYM 193
A + + T LH A + +++VVK+L + D + + +G+TPL++
Sbjct: 57 --------AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHL 107
Query: 194 AAESRSSDMVLALLE 208
AA + ++V LLE
Sbjct: 108 AARNGHLEVVKLLLE 122
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEI 315
G TP+H AA +G + V LLLE N DK+ + T LHLAA G+ E+
Sbjct: 2 GRTPLHLAARNGHLEV---------VKLLLEAGADV-NAKDKNGR-TPLHLAARNGHLEV 50
Query: 316 VDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEG------DAMGNTPLHVLA 363
V ++ + D G LH A V + L+ G D G TPLH+ A
Sbjct: 51 VKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109
Query: 364 AVRRNEFYDVM 374
RN +V+
Sbjct: 110 ---RNGHLEVV 117
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 12/90 (13%)
Query: 37 AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL 96
AA +G++E K + + K T LH+ N E V+ +LE
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL-----AARNGHLEVVKLLLEAGAD--- 93
Query: 97 QVNAK---GDTPLHVAAKFGHSGIVTFLVE 123
VNAK G TPLH+AA+ GH +V L+E
Sbjct: 94 -VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 18/169 (10%)
Query: 77 ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKL--------- 127
EN E V+ ++ K +L+ +A+G T LH+AAK GH +V +L+ ++
Sbjct: 53 ENNHLEAVKYLI-KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111
Query: 128 -------PQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
++++ +L + + I + +NE+N LH A VD+ +IL D
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL- 170
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM 229
++ N G +PL++AA D V+ L + V+ + G+T L A++
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
KM + K + LH A +VD+ +L + + + + D +TPL AAE+ + V
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKY 62
Query: 206 LLENSTSVSHEGPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYA 263
L++ V + G T LH AA K +++V D GWTP
Sbjct: 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVV----QYLLSNGQMDVNCQDDGGWTP---- 114
Query: 264 AYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN 323
M W Y + V LLL + S NI D + + LH AA G +I + +++
Sbjct: 115 ----MIWATE-YKHVDLVKLLL-SKGSDINIRDNEENIC-LHWAAFSGCVDIAEILLAAK 167
Query: 324 PECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMI 375
+ LH + G++PLH+ A R YD ++
Sbjct: 168 CD------------LHAVNIH----------GDSPLHIAA---RENRYDCVV 194
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 18/181 (9%)
Query: 104 TPLHVAAKFGHSGIVTFLVERAK-------------LPQHENEELESG--VGAARQMIKM 148
+PLH AA+ GH I LV+ + EN LE+ + A ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 149 TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLE 208
+ E +T LH A + +VV+ L ++ G TP+ A E + D+V LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 209 NSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGM 268
+ ++ LH AA VD A + +G +P+H AA
Sbjct: 133 KGSDINIRDNEENICLHWAAFS-GCVDIA--EILLAAKCDLHAVNIHGDSPLHIAARENR 189
Query: 269 Y 269
Y
Sbjct: 190 Y 190
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S++ + +AA +GN + KD+ + + T LH + E +EI
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHY---------AAKEGHKEI 52
Query: 88 LEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ 144
++ S VNAK G TPLH AAK GH IV L+ +
Sbjct: 53 VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG------------------A 94
Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL 204
+ +++ T LH A + ++VK+L + D S ++DG+TPL +A E + ++V
Sbjct: 95 DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS-DSDGRTPLDLAREHGNEEIV- 152
Query: 205 ALLE 208
LLE
Sbjct: 153 KLLE 156
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 77 ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136
EN + + V++++E + ++ G TPLH AAK GH IV L+ +
Sbjct: 13 ENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKG----------- 60
Query: 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
+ +++ T LH A + ++VK+L + D + ++DG+TPL+ AA+
Sbjct: 61 -------ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAAK 112
Query: 197 SRSSDMVLALLENSTSVSHEGPNGKTALHAA 227
++V L+ V+ +G+T L A
Sbjct: 113 EGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 72/160 (45%), Gaps = 15/160 (9%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA + N D VK L + D S ++DG+TPL+ AA+ ++V L+ V+ +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 217 GPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYG 276
+G+T LH AA + D G TP+HYAA G I
Sbjct: 67 DSDGRTPLHYAAKEG---HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI----- 118
Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
V LL+ + + N +D D + T L LA GN EIV
Sbjct: 119 ----VKLLI-SKGADVNTSDSDGR-TPLDLAREHGNEEIV 152
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXX 250
L AAE+ + D V L+EN V+ +G+T LH AA +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGH---KEIVKLLISKGADVN 64
Query: 251 XTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ 310
D G TP+HYAA G I V LL+ + + N D D + T LH AA +
Sbjct: 65 AKDSDGRTPLHYAAKEGHKEI---------VKLLI-SKGADVNAKDSDGR-TPLHYAAKE 113
Query: 311 GNAEIVDAIISKNPEC 326
G+ EIV +ISK +
Sbjct: 114 GHKEIVKLLISKGADV 129
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
GN V L+E N +D D + T LH AA +G+ EIV +ISK + D+ G
Sbjct: 15 GNKDRVKDLIENGADV-NASDSDGR-TPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGR 71
Query: 336 NFLHYAV------VTRSLINEG------DAMGNTPLHVLAAVRRNEFYDVMI-RNTQVN 381
LHYA + + LI++G D+ G TPLH A E ++I + VN
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
EA + N D VK L + D S ++DGKTPL++AAE+ ++V LL + +
Sbjct: 10 EAAENGNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 219 NGKTALHAAA-------MKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
+GKT LH AA +K L A D G TP+H AA +G +
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGA----------DPNAKDSDGKTPLHLAAENGHKEV 118
Query: 272 NRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
V LLL + + N +D D + T L LA GN E+V
Sbjct: 119 ---------VKLLL-SQGADPNTSDSDGR-TPLDLAREHGNEEVV 152
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 32/184 (17%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S++ + +AA +GN + KD+ + + T LH+ EN E V+ +
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAA-----ENGHKEVVKLL 56
Query: 88 LEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ 144
L + NAK G TPLH+AA+ GH +V L+ + P
Sbjct: 57 LSQGAD----PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN--------------- 97
Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL 204
+++ T LH A + + +VVK+L + D S ++DG+TPL +A E ++ V+
Sbjct: 98 ---AKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS-DSDGRTPLDLARE-HGNEEVV 152
Query: 205 ALLE 208
LLE
Sbjct: 153 KLLE 156
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 28/122 (22%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
+D G TP+H AA +G + V LLL + + N D D K T LHLAA G
Sbjct: 33 SDSDGKTPLHLAAENGHKEV---------VKLLL-SQGADPNAKDSDGK-TPLHLAAENG 81
Query: 312 NAEIVDAIISK--NPECYELVDNRGWNFLHYAV------VTRSLINEG------DAMGNT 357
+ E+V ++S+ +P D+ G LH A V + L+++G D+ G T
Sbjct: 82 HKEVVKLLLSQGADPNAK---DSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRT 138
Query: 358 PL 359
PL
Sbjct: 139 PL 140
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNR 333
GN V LLE N +D D K T LHLAA G+ E+V ++S+ +P D+
Sbjct: 15 GNKDRVKDLLENGADV-NASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAK---DSD 69
Query: 334 GWNFLHYAV------VTRSLINEG------DAMGNTPLHVLAAVRRNEFYDVMI 375
G LH A V + L+++G D+ G TPLH+ A E +++
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 69/163 (42%), Gaps = 32/163 (19%)
Query: 18 LLDSTGEISQSQMDPK--FFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKE 75
LL++ +++ S D K AA +G+ E K + + + T LH+
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA---- 78
Query: 76 RENVSTEFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHEN 132
EN E V+ +L + NAK G TPLH+AA+ GH +V L+ + P
Sbjct: 79 -ENGHKEVVKLLLSQGAD----PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN--- 130
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE 175
++++ T L A H N +VVK+L K+
Sbjct: 131 ---------------TSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 75/165 (45%), Gaps = 29/165 (17%)
Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
EA + N D VK L + D S ++DG+TPL+ AAE+ ++V LL + +
Sbjct: 10 EAAENGNKDRVKDLLENGADPNAS-DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 219 NGKTALHAAA-------MKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
+G+T LH AA +K L A D G TP+HYAA +G I
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGA----------DPNAKDSDGRTPLHYAAENGHKEI 118
Query: 272 NRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
V LLL + + N +D D + T L LA GN EIV
Sbjct: 119 ---------VKLLL-SKGADPNTSDSDGR-TPLDLAREHGNEEIV 152
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 32/184 (17%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S++ + +AA +GN + KD+ + + T LH EN E V+ +
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAA-----ENGHKEIVKLL 56
Query: 88 LEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ 144
L K NAK G TPLH AA+ GH IV L+ + P
Sbjct: 57 LSKG----ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN--------------- 97
Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL 204
+++ T LH A + + ++VK+L + D S ++DG+TPL +A E + ++V
Sbjct: 98 ---AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS-DSDGRTPLDLAREHGNEEIV- 152
Query: 205 ALLE 208
LLE
Sbjct: 153 KLLE 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 28/155 (18%)
Query: 77 ENVSTEFVEEILEKC--PSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134
EN + + V+++LE P+ ++ G TPLH AA+ GH IV L+ + P
Sbjct: 13 ENGNKDRVKDLLENGADPN---ASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN----- 64
Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE--DPDYRYSANNDGKTPLY 192
+++ T LH A + + ++VK+L + DP+ + S DG+TPL+
Sbjct: 65 -------------AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS---DGRTPLH 108
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA 227
AAE+ ++V LL + +G+T L A
Sbjct: 109 YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 15/112 (13%)
Query: 276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
GN V LLE + + N +D D + T LH AA G+ EIV ++SK + D+ G
Sbjct: 15 GNKDRVKDLLE-NGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADP-NAKDSDGR 71
Query: 336 NFLHYAV------VTRSLINEG------DAMGNTPLHVLAAVRRNEFYDVMI 375
LHYA + + L+++G D+ G TPLH A E +++
Sbjct: 72 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 25/102 (24%)
Query: 77 ENVSTEFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENE 133
EN E V+ +L K NAK G TPLH AA+ GH IV L+ + P
Sbjct: 79 ENGHKEIVKLLLSKG----ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN---- 130
Query: 134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE 175
++++ T L A H N ++VK+L K+
Sbjct: 131 --------------TSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 32/184 (17%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S++ + +AA +GN + KD+ + + T LH EN E V+ +
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH-----HAAENGHKEVVKLL 56
Query: 88 LEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQ 144
+ K VNAK G TPLH AA+ GH +V L+ +
Sbjct: 57 ISKGA----DVNAKDSDGRTPLHHAAENGHKEVVKLLISKG------------------A 94
Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVL 204
+ +++ T LH A + + +VVK+L + D S ++DG+TPL +A E ++ V+
Sbjct: 95 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLARE-HGNEEVV 152
Query: 205 ALLE 208
LLE
Sbjct: 153 KLLE 156
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 20/148 (13%)
Query: 77 ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136
EN + + V++++E + ++ G TPLH AA+ GH +V L+ +
Sbjct: 13 ENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKG----------- 60
Query: 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
+ +++ T LH A + + +VVK+L + D + ++DG+TPL+ AAE
Sbjct: 61 -------ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAE 112
Query: 197 SRSSDMVLALLENSTSVSHEGPNGKTAL 224
+ ++V L+ V+ +G+T L
Sbjct: 113 NGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP 218
EA + N D VK L + D S ++DG+TPL+ AAE+ ++V L+ V+ +
Sbjct: 10 EAAENGNKDRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 219 NGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNY 278
+G+T LH AA D G TP+H+AA +G +
Sbjct: 69 DGRTPLHHAAENG---HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV------- 118
Query: 279 GTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316
V LL+ + + N +D D + T L LA GN E+V
Sbjct: 119 --VKLLI-SKGADVNTSDSDGR-TPLDLAREHGNEEVV 152
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 14/136 (10%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXX 250
L AAE+ + D V L+EN V+ +G+T LH AA
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGH---KEVVKLLISKGADVN 64
Query: 251 XTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ 310
D G TP+H+AA +G + V LL+ + + N D D + T LH AA
Sbjct: 65 AKDSDGRTPLHHAAENGHKEV---------VKLLI-SKGADVNAKDSDGR-TPLHHAAEN 113
Query: 311 GNAEIVDAIISKNPEC 326
G+ E+V +ISK +
Sbjct: 114 GHKEVVKLLISKGADV 129
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 276 GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335
GN V L+E N +D D + T LH AA G+ E+V +ISK + D+ G
Sbjct: 15 GNKDRVKDLIENGADV-NASDSDGR-TPLHHAAENGHKEVVKLLISKGADVN-AKDSDGR 71
Query: 336 NFLHYAV------VTRSLINEG------DAMGNTPLHVLAAVRRNEFYDVMI 375
LH+A V + LI++G D+ G TPLH A E ++I
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 33/125 (26%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
+D GWTP+H AAY +G+ V +LL+ + AD +T LHLAA +G
Sbjct: 43 SDHVGWTPLHLAAY---------FGHLEIVEVLLKNGADVN--ADDSLGVTPLHLAADRG 91
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
+ E+V+ ++ + +N D G TPLH+ A + E
Sbjct: 92 HLEVVEVLLKNGAD----------------------VNANDHNGFTPLHLAANIGHLEIV 129
Query: 372 DVMIR 376
+V+++
Sbjct: 130 EVLLK 134
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA FGH IV L++ N + GV T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGA---DVNADDSLGV---------------TPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
+++VV++L K D + +N G TPL++AA ++V LL++ V+ + GK
Sbjct: 89 DRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 222 TAL 224
TA
Sbjct: 148 TAF 150
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + ++ G TPL++AA+ ++V LL+N V+
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107
Query: 215 HEGPNGKTALHAAA 228
NG T LH AA
Sbjct: 108 ANDHNGFTPLHLAA 121
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 22/130 (16%)
Query: 98 VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
VNA+ G TPLH+AA FGH IV L++ N + GV
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNG---ADVNAKDSLGV--------------- 81
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D S ++ G TPL++AA+ ++V LL+N V+
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 35/126 (27%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDR-KMTALHLAAGQG 311
D GWTP+H AA+ +G+ V +LL ++ +++ KD +T LHLAA +G
Sbjct: 44 DFTGWTPLHLAAH---------FGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRG 91
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
+ EIV+ ++ + +N D+ G TPLH+ A E
Sbjct: 92 HLEIVEVLLKNGAD----------------------VNASDSHGFTPLHLAAKRGHLEIV 129
Query: 372 DVMIRN 377
+V+++N
Sbjct: 130 EVLLKN 135
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + G TPL++AA ++V LL+N V+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
G T LH AA + ++V+ +D +G+TP+H AA G I
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEV-----LLKNGADVNASDSHGFTPLHLAAKRGHLEI 128
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + ++ G TPL++AA ++V LL+N V+
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVN-AKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 215 HEGPNGKTALHAAAMK 230
+G T LH AA +
Sbjct: 108 ASDSHGFTPLHLAAKR 123
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 18/138 (13%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM--KFDLVDTAXXXXXXXXXXX 248
L AA + D V L+ N V+ G T LH AA ++V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEV-----LLKNGAD 72
Query: 249 XXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308
D G TP+H AA G I V +LL+ + A T LHLAA
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEI---------VEVLLKNGADVN--ASDSHGFTPLHLAA 121
Query: 309 GQGNAEIVDAIISKNPEC 326
+G+ EIV+ ++ +
Sbjct: 122 KRGHLEIVEVLLKNGADV 139
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 26/124 (20%)
Query: 82 EFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG 138
E VE +L+ VNAK G TPLH+AA+ GH IV L L++G
Sbjct: 61 EIVEVLLKNGA----DVNAKDSLGVTPLHLAARRGHLEIVEVL-------------LKNG 103
Query: 139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESR 198
+ +++ T LH A ++++V++L K D + + GKT ++ ++
Sbjct: 104 AD-----VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNG 157
Query: 199 SSDM 202
+ D+
Sbjct: 158 NEDL 161
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 28/133 (21%)
Query: 98 VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
VNA+ GDTPLH+AA+ GH IV L++ GA + + +
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKN---------------GADVNALDFSG---S 81
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANND---GKTPLYMAAESRSSDMVLALLENST 211
T LH A ++++V++L K Y N D G TPL++AA++ ++V LL+
Sbjct: 82 TPLHLAAKRGHLEIVEVLLK----YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGA 137
Query: 212 SVSHEGPNGKTAL 224
V+ + GKTA
Sbjct: 138 DVNAQDKFGKTAF 150
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 35/125 (28%)
Query: 253 DQYGWTPIHYAAYHG-MYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
D YG TP+H AA G + + N VN L D S S T LHLAA +G
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL---DFSGS---------TPLHLAAKRG 91
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
+ EIV+ ++ + +N D +G+TPLH+ A E
Sbjct: 92 HLEIVEVLLKYGAD----------------------VNADDTIGSTPLHLAADTGHLEIV 129
Query: 372 DVMIR 376
+V+++
Sbjct: 130 EVLLK 134
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 20/133 (15%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM--KFDLVDTAXXXXXXXXXXX 248
L AA + D V L+ N V+ E G T LH AA ++V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEV-----LLKNGAD 72
Query: 249 XXXTDQYGWTPIHYAAYHGMYWINRFYGNYGT-VNLLLETDQSASNIADKDRKMTALHLA 307
D G TP+H AA G I YG VN AD T LHLA
Sbjct: 73 VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN------------ADDTIGSTPLHLA 120
Query: 308 AGQGNAEIVDAII 320
A G+ EIV+ ++
Sbjct: 121 ADTGHLEIVEVLL 133
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 49/123 (39%), Gaps = 4/123 (3%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + G TPL++AA ++V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL 76
Query: 217 GPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYG 276
+G T LH AA + L D G TP+H AA G I
Sbjct: 77 DFSGSTPLHLAAKRGHL---EIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLL 133
Query: 277 NYG 279
YG
Sbjct: 134 KYG 136
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVE 123
+ E+L K + + ++ G TPLH+AAK GH IV L++
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 348 INEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377
+N D G+TPLH+ A V E +V+++N
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Query: 98 VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
VNAK G TPLH+AA+ GH IV L++ A + + +
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 81
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + + DG TPL++AA ++V LL+ V+
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 141 AQDKFGKTAF 150
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + DG TPL++AA ++V LL+ V+ +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 76
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
+G T LH AA + ++V+ D+ G+TP+H AA G I
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEI 128
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL----- 347
N DKD T LHLAA +G+ EIV+ ++ + D G+ LH A L
Sbjct: 41 NAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 348 -------INEGDAMGNTPLHVLAAVRRNEFYDVMIR 376
+N D G TPLH+ A E +V+++
Sbjct: 99 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 22/120 (18%)
Query: 86 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
EI+E VNAK G TPLH+AA+ GH IV L++ A
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------A 102
Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+ + + T LH A ++++V++L K D + + GKT ++ ++ + D+
Sbjct: 103 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 63 RNTILHINIISKERENVSTEFVEEIL-EKC-PSLLLQVNAKGDTPLHVAAKFGHSGIVTF 120
+ T LH+ +I+ + E E +L C P L + +G+TPLH+A + G V
Sbjct: 42 QQTPLHLAVITNQ-----PEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGV 93
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
L + P ++K TN +T LH A H + +V++L D
Sbjct: 94 LTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 141
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
+G+T L++A + ++ D+V LL+ V
Sbjct: 142 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 174
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 18/176 (10%)
Query: 152 EKNTALHEAVCHK----NVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
+ ++ LH A+ H+ ++V++ + K D + NN +TPL++A + ++ ALL
Sbjct: 4 DGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 62
Query: 208 ENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXX---XXXXXTDQYGWTPIHYAA 264
G T LH A + L T+ G T +H A+
Sbjct: 63 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 122
Query: 265 YHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
HG G V LL+ N + TALHLA N ++V ++
Sbjct: 123 IHGY---------LGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLL 168
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/255 (23%), Positives = 107/255 (41%), Gaps = 19/255 (7%)
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
E N L +AV +++VD+V+ L + + + G TPL+ A + D+V LL +
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
NG T AA+ + D YG+T AA +G
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSV---KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 272 NRF-YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV 330
+F Y VNL +T + + + TAL AA +G+ E++ ++ +
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERL--RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 178
Query: 331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD---AVNK 387
DN G N L +A+++ ++ + + + + DV +R + AV K
Sbjct: 179 DNMGRNALIHALLSSD---------DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 388 QNVS-VEHILDYEHI 401
+++ V+ +L+ EHI
Sbjct: 230 KHLGLVQRLLEQEHI 244
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 111/292 (38%), Gaps = 44/292 (15%)
Query: 70 NIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQ 129
+++ K +N + V+++LE ++ Q G TPLH A + IV L+ P
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 130 HENEE-----LESGVGAARQMIKM------TNNEKN----TALHEAVCHKNVDVVKIL-- 172
+ L + + + +++K+ NE + TA EA + V +K L
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 173 ----------TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL-ENSTSVSHEGPNGK 221
TKED + G T L AAE +++ LL E V+ G+
Sbjct: 127 RGANVNLRRKTKEDQERLRKG---GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 183
Query: 222 TALHAAAMKFDLVDT-AXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGT 280
AL A + D D A + G TP+ A + G
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK---------KHLGL 234
Query: 281 VNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELV 330
V LLE + N D D K TAL LA +I + + + + +C +LV
Sbjct: 235 VQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIAELLCKRGASTDCGDLV 285
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 19/255 (7%)
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
E N L +AV +++VD+V+ L + + + G TPL+ A + D+V LL +
Sbjct: 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 83
Query: 212 SVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
NG T AA+ + D YG+T AA +G
Sbjct: 84 DPVLRKKNGATPFILAAIAGSV---KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 140
Query: 272 NRF-YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV 330
+F Y VNL +T + + + TAL AA +G+ E++ ++ +
Sbjct: 141 LKFLYKRGANVNLRRKTKEDQERL--RKGGATALMDAAEKGHVEVLKILLDEMGADVNAC 198
Query: 331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD---AVNK 387
DN G N L +A L++ D+ H+L + DV +R + AV K
Sbjct: 199 DNMGRNALIHA-----LLSSDDSDVEAITHLLL----DHGADVNVRGERGKTPLILAVEK 249
Query: 388 QNVS-VEHILDYEHI 401
+++ V+ +L+ EHI
Sbjct: 250 KHLGLVQRLLEQEHI 264
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 71/304 (23%), Positives = 116/304 (38%), Gaps = 44/304 (14%)
Query: 70 NIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQ 129
+++ K +N + V+++LE ++ Q G TPLH A + IV L+ P
Sbjct: 27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 130 HENEE-----LESGVGAARQMIKM------TNNEKN----TALHEAVCHKNVDVVKIL-- 172
+ + + + + +++K+ NE + TA EA + V +K L
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 173 ----------TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN-GK 221
TKED + G T L AAE +++ LL+ + + N G+
Sbjct: 147 RGANVNLRRKTKEDQERLRKG---GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR 203
Query: 222 TALHAAAMKFDLVDT-AXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGT 280
AL A + D D A + G TP+ A + G
Sbjct: 204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK---------KHLGL 254
Query: 281 VNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISK--NPECYELVDNRGWNFL 338
V LLE + N D D K TAL LA +I + + + + +C +LV N+
Sbjct: 255 VQRLLEQEHIEINDTDSDGK-TALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYD 313
Query: 339 HYAV 342
H V
Sbjct: 314 HSLV 317
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + +N G TPL++AA + ++V LL+N V+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
G T LH AA ++V+ D+ GWTP+H AA G I
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEV-----LLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Query: 275 YGNYGT 280
+G
Sbjct: 124 LLKHGA 129
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI 348
A D +T LHLAA G EIV+ ++ KN D+ G LH A + L+
Sbjct: 34 ATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 349 NEG------DAMGNTPLHVLAAVRRNEFYDVMIR 376
G D G TPLH+ A + E +V+++
Sbjct: 93 KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 98 VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
VNAK G TPLH+AA+ GH IV L++ A + + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 69
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + + DG TPL++AA ++V LL+ V+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 215 HEGPNGKT 222
+ GKT
Sbjct: 129 AQDKFGKT 136
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + DG TPL++AA ++V LL+ V+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
+G T LH AA + ++V+ D+ G+TP+H AA G I
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL----- 347
N DKD T LHLAA +G+ EIV+ ++ + D G+ LH A L
Sbjct: 29 NAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 348 -------INEGDAMGNTPLHVLAAVRRNEFYDVMIR 376
+N D G TPLH+ A E +V+++
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 86 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
EI+E VNAK G TPLH+AA+ GH IV L++ A
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------A 90
Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+ + + T LH A ++++V++L K D + + GKTP +A D+
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIREGHEDI 149
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 22/153 (14%)
Query: 63 RNTILHINIISKERENVSTEFVEEIL-EKC-PSLLLQVNAKGDTPLHVAAKFGHSGIVTF 120
+ T LH+ +I+ + E E +L C P L + +G+TPLH+A + G V
Sbjct: 45 QQTPLHLAVITNQ-----PEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGV 96
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
L + P ++K TN +T LH A H + +V++L D
Sbjct: 97 LTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
+G+T L++A + ++ D+V LL+ V
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 177
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 69/176 (39%), Gaps = 18/176 (10%)
Query: 152 EKNTALHEAVCHK----NVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
+ ++ LH A+ H+ ++V++ + K D + NN +TPL++A + ++ ALL
Sbjct: 7 DGDSFLHLAIIHEEKALTMEVIRQV-KGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALL 65
Query: 208 ENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXX---XXXXXTDQYGWTPIHYAA 264
G T LH A + L T+ G T +H A+
Sbjct: 66 GAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS 125
Query: 265 YHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
HG G V LL+ N + TALHLA N ++V ++
Sbjct: 126 IHGY---------LGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLL 171
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA GH IV L++ GA +T T LH A
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKN---------------GADVNASDLTG---ITPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
++++V++L K D + +NDG TPL++AA+ ++V LL++ V+ + GK
Sbjct: 89 ATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 222 TAL 224
TA
Sbjct: 148 TAF 150
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
L+E A+ Q + + GA + T+N+ T LH A + ++++V++L K D
Sbjct: 18 LLEAARAGQDDEVRILMANGAD---VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN 74
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAA 228
S + G TPL++AA + ++V LL++ V+ +G T LH AA
Sbjct: 75 AS-DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
D V+IL D + +NDG TPL++AA + ++V LL+N V+ G T LH
Sbjct: 28 DEVRILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHL 86
Query: 227 AAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWI 271
AA L D G TP+H AA +G I
Sbjct: 87 AAATGHL---EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI 128
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL------------IN 349
T LHLAA G+ EIV+ ++ KN D G LH A T L +N
Sbjct: 49 TPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 350 EGDAMGNTPLHVLAAVRRNEFYDVMIR 376
D G+TPLH+ A E +V+++
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 37 AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL 96
AA++G++E + + + + + T T LH+ + E V E+L K + +
Sbjct: 54 AASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIV------EVLLKHGADVN 107
Query: 97 QVNAKGDTPLHVAAKFGHSGIVTFLVERA 125
+ G TPLH+AAK+GH IV L++
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 22/128 (17%)
Query: 98 VNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154
VNAK G TPLH+AA+ GH IV L++ A + + +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDGY 69
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + + DG TPL++AA ++V LL+ V+
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 215 HEGPNGKT 222
+ GKT
Sbjct: 129 AQDKFGKT 136
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 19/165 (11%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + DG TPL++AA ++V LL+ V+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 64
Query: 217 GPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
+G T LH AA + ++V+ D+ G+TP+H AA G I
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEV-----LLKAGADVNAKDKDGYTPLHLAAREGHLEI--- 116
Query: 275 YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAI 319
V +LL+ N DK K T LA GN +I + +
Sbjct: 117 ------VEVLLKAGADV-NAQDKFGK-TPFDLAIDNGNEDIAEVL 153
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 86 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
EI+E VNAK G TPLH+AA+ GH IV L++ A
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------A 90
Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+ + + T LH A ++++V++L K D + + GKTP +A ++ + D+
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAIDNGNEDI 149
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL----- 347
N DKD T LHLAA +G+ EIV+ ++ + D G+ LH A L
Sbjct: 29 NAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 348 -------INEGDAMGNTPLHVLAAVRRNEFYDVMIR 376
+N D G TPLH+ A E +V+++
Sbjct: 87 LLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 128 PQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG 187
P ENEE E R ++ N + +T LH AV HK+ ++V++L D G
Sbjct: 134 PNPENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 188 KTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK 230
+TPL++A E++++ ++ LL+ + G+T L +A ++
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
V GDT LH+A H + FL+ G A + + + N+ TAL
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLL---------------GFSAGHEYLDLQNDLGQTAL 49
Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
H A V+ L A G T L++A R+ LL+ S
Sbjct: 50 HLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 128 PQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG 187
P ENEE E R ++ N + +T LH AV HK+ ++V++L D G
Sbjct: 134 PNPENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 188 KTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK 230
+TPL++A E++++ ++ LL+ + G+T L +A ++
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 41/115 (35%), Gaps = 16/115 (13%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
V GDT LH+A H + FL+ G A + + + N+ TAL
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLL---------------GFSAGHEYLDLQNDLGQTAL 49
Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212
H A V+ L A G T L++A R+ LL+ S
Sbjct: 50 HLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRVRAHTCACVLLQPRPS 103
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + ++ GKTPL++AA ++V LL++ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 217 GPNGKTALHAAAM--KFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
G T LH AA+ ++V+ TD YG+TP+H AA G I
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEV-----LLKNGADVNATDTYGFTPLHLAADAGHLEIVEV 131
Query: 275 YGNYGT 280
YG
Sbjct: 132 LLKYGA 137
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 59/132 (44%), Gaps = 18/132 (13%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXX 248
L AA + D V L+ N V+ E +GKT LH AA+K ++V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEV-----LLKHGAD 72
Query: 249 XXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308
D+ G TP+H AA YG+ V +LL+ + A T LHLAA
Sbjct: 73 VNAADKMGDTPLHLAA---------LYGHLEIVEVLLKNGADVN--ATDTYGFTPLHLAA 121
Query: 309 GQGNAEIVDAII 320
G+ EIV+ ++
Sbjct: 122 DAGHLEIVEVLL 133
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 22/83 (26%)
Query: 295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAM 354
A+ D T LHLAA +G+ EIV+ ++ + +N D M
Sbjct: 42 AEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD----------------------VNAADKM 79
Query: 355 GNTPLHVLAAVRRNEFYDVMIRN 377
G+TPLH+ A E +V+++N
Sbjct: 80 GDTPLHLAALYGHLEIVEVLLKN 102
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 33/124 (26%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D G TP+H AA G I V +LL+ N ADK T LHLAA G+
Sbjct: 44 DDSGKTPLHLAAIKGHLEI---------VEVLLKHGADV-NAADK-MGDTPLHLAALYGH 92
Query: 313 AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYD 372
EIV+ ++ + +N D G TPLH+ A E +
Sbjct: 93 LEIVEVLLKNGAD----------------------VNATDTYGFTPLHLAADAGHLEIVE 130
Query: 373 VMIR 376
V+++
Sbjct: 131 VLLK 134
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 25/175 (14%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S + K +AA G + + + + + T LH+ I E V E+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIV------EV 65
Query: 88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIK 147
L K + + + GDTPLH+AA +GH IV L++ GA +
Sbjct: 66 LLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN---------------GAD---VN 107
Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
T+ T LH A ++++V++L K D + + GKT ++ ++ + D+
Sbjct: 108 ATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
EEL+ + A + + T+ + TALH A + ++V+ L + ++ G +PL+
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
+AA + ++V ALL V+ NG T LH AA K
Sbjct: 79 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 135
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D Y T +H AA GN +++LL ++++NI D + T LHLA +
Sbjct: 136 DHYEATAMHRAAAK---------GNLKMIHILLYY-KASTNIQDTEGN-TPLHLACDEER 184
Query: 313 AEIVDAIISKNPECY 327
E ++S+ Y
Sbjct: 185 VEEAKLLVSQGASIY 199
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 25/140 (17%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
VN G TPLH AA I L+E P ++ + + TA+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------------------HYEATAM 143
Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSAN---NDGKTPLYMAAESRSSDMVLALLENSTSVS 214
H A N+ ++ IL Y+ S N +G TPL++A + + L+ S+
Sbjct: 144 HRAAAKGNLKMIHILLY----YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 199
Query: 215 HEGPNGKTALHAAAMKFDLV 234
E KT L A L+
Sbjct: 200 IENKEEKTPLQVAKGGLGLI 219
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 28/156 (17%)
Query: 82 EFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141
E E IL SL + + T LH A GH+ IV FL++
Sbjct: 21 ELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 61
Query: 142 ARQMIKMTNNEKNTA----LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAES 197
+ + N+K+ A LH A ++VK L + + N +G TPL+ AA
Sbjct: 62 ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASK 116
Query: 198 RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDL 233
++ + LLE + + TA+H AA K +L
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 152
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 288 DQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL 347
D+S + D+D + TALH A G+ EIV+ FL V
Sbjct: 29 DKSLATRTDQDSR-TALHWACSAGHTEIVE-------------------FLLQLGVP--- 65
Query: 348 INEGDAMGNTPLHVLAAVRRNEFYDVMI-RNTQVNYDAVNKQNVSVEH 394
+N+ D G +PLH+ A+ R+E ++ + QVN AVN+ + H
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN--AVNQNGCTPLH 111
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
EEL+ + A + + T+ + TALH A + ++V+ L + ++ G +PL+
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 79
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
+AA + ++V ALL V+ NG T LH AA K
Sbjct: 80 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 136
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D Y T +H AA GN +++LL ++++NI D + T LHLA +
Sbjct: 137 DHYEATAMHRAAAK---------GNLKMIHILLYY-KASTNIQDTEGN-TPLHLACDEER 185
Query: 313 AEIVDAIISKNPECY 327
E ++S+ Y
Sbjct: 186 VEEAKLLVSQGASIY 200
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 29/175 (16%)
Query: 81 TEFVEEILEKCPSLLLQVNAKGD---TPLHVAAKFGHSGIVTFLVERAK----LPQHENE 133
TE VE +L+ L + VN K D +PLH+AA G IV L+ + + Q+
Sbjct: 54 TEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 109
Query: 134 ELESGVGAARQMIKM-----------TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYS 182
L R I + ++ + TA+H A N+ ++ IL Y+ S
Sbjct: 110 PLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YKAS 165
Query: 183 AN---NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLV 234
N +G TPL++A + + L+ S+ E KT L A L+
Sbjct: 166 TNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLI 220
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 28/156 (17%)
Query: 82 EFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141
E E IL SL + + T LH A GH+ IV FL++
Sbjct: 22 ELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 62
Query: 142 ARQMIKMTNNEKNTA----LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAES 197
+ + N+K+ A LH A ++VK L + + N +G TPL+ AA
Sbjct: 63 ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASK 117
Query: 198 RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDL 233
++ + LLE + + TA+H AA K +L
Sbjct: 118 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNL 153
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 288 DQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL 347
D+S + D+D + TALH A G+ EIV+ FL V
Sbjct: 30 DKSLATRTDQDSR-TALHWACSAGHTEIVE-------------------FLLQLGVP--- 66
Query: 348 INEGDAMGNTPLHVLAAVRRNEFYDVMI-RNTQVNYDAVNKQNVSVEH 394
+N+ D G +PLH+ A+ R+E ++ + QVN AVN+ + H
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN--AVNQNGCTPLH 112
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AAK GH IV L++ + +N T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYG------------------ADVNAWDNYGATPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
+ ++++V++L K D + + +G TPL++AA ++V LL+ V+ + GK
Sbjct: 89 DNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 222 TAL 224
TA
Sbjct: 148 TAF 150
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
L+E A+ Q + + GA + T+ +T LH A ++++V++L K D
Sbjct: 18 LLEAARAGQDDEVRILMANGAD---VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN 74
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAA 228
+ +N G TPL++AA++ ++V LL++ V+ + G T LH AA
Sbjct: 75 -AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAA 121
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 8/126 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + G TPL++AA++ ++V LL+ V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW 76
Query: 217 GPNGKTALHAAA--MKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRF 274
G T LH AA ++V+ D G+TP+H AAY G I
Sbjct: 77 DNYGATPLHLAADNGHLEIVEV-----LLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 275 YGNYGT 280
YG
Sbjct: 132 LLKYGA 137
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A + +++VVK+L + D + + +G+TPL++AA + ++V LLE V+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 215 HEGPNGKTALHAAA 228
+ NG+T LH AA
Sbjct: 63 AKDKNGRTPLHLAA 76
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 19/107 (17%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA+ GH +V L+E A + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAA 43
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLE 208
+ +++VVK+L + D + + +G+TPL++AA + ++V LLE
Sbjct: 44 RNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXX 245
+G+TPL++AA + ++V LLE V+ + NG+T LH AA L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL---EVVKLLLEA 57
Query: 246 XXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLET 287
D+ G TP+H AA +G + V LLLE
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEV---------VKLLLEA 90
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 16/85 (18%)
Query: 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLINEG---- 351
T LHLAA G+ E+V ++ + D G LH A V + L+ G
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 352 --DAMGNTPLHVLAAVRRNEFYDVM 374
D G TPLH+ A RN +V+
Sbjct: 63 AKDKNGRTPLHLAA---RNGHLEVV 84
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 68/170 (40%), Gaps = 48/170 (28%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D +A+N G TPL++AA S ++V LL++ V
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-- 74
Query: 217 GPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYG 276
+D +G+TP+H AAY +G
Sbjct: 75 ----------------------------------ASDVFGYTPLHLAAY---------WG 91
Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPEC 326
+ V +LL+ N D D MT LHLAA G EIV+ ++ +
Sbjct: 92 HLEIVEVLLKNGADV-NAMDSD-GMTPLHLAAKWGYLEIVEVLLKHGADV 139
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 33/126 (26%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
D G TP+H AAY G I +G D AS++ T LHLAA G
Sbjct: 43 ADNTGTTPLHLAAYSGHLEIVEVLLKHGA-------DVDASDV----FGYTPLHLAAYWG 91
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
+ EIV+ ++ + +N D+ G TPLH+ A E
Sbjct: 92 HLEIVEVLLKNGAD----------------------VNAMDSDGMTPLHLAAKWGYLEIV 129
Query: 372 DVMIRN 377
+V++++
Sbjct: 130 EVLLKH 135
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S + K +AA G + + + + T T LH+ S E V E+
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIV------EV 65
Query: 88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIK 147
L K + + + G TPLH+AA +GH IV L++ GA +
Sbjct: 66 LLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN---------------GAD---VN 107
Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+++ T LH A +++V++L K D + + GKT ++ ++ + D+
Sbjct: 108 AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 26/203 (12%)
Query: 33 KFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCP 92
K +A ADG++E + + E L A+ + + ++ L K P
Sbjct: 14 KLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVP 73
Query: 93 SLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT 149
+ L VN G +PLHVAA G + ++ L L+ G A +
Sbjct: 74 ASGLGVNVTSQDGSSPLHVAALHGRADLIPLL-------------LKHGANAGAR----- 115
Query: 150 NNEKNTALHEAVCHKNVDVVKIL--TKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
N ++ LH A + VVK L + P+ + + G TPL A ++V LL
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK---DLSGNTPLIYACSGGHHELVALLL 172
Query: 208 ENSTSVSHEGPNGKTALHAAAMK 230
++ S++ G TALH A ++
Sbjct: 173 QHGASINASNNKGNTALHEAVIE 195
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 45/90 (50%), Gaps = 28/90 (31%)
Query: 90 KCPSLLLQVNAK-------GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
KC LL NAK G+TPL A GH +V L+ QH GA+
Sbjct: 136 KC---LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL------QH---------GAS 177
Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKIL 172
I +NN+ NTALHEAV K+V VV++L
Sbjct: 178 ---INASNNKGNTALHEAVIEKHVFVVELL 204
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 61/151 (40%), Gaps = 33/151 (21%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
T Q G +P+H AA HG + + LLL+ +A A + LHLA QG
Sbjct: 82 TSQDGSSPLHVAALHGRADL---------IPLLLKHGANAG--ARNADQAVPLHLACQQG 130
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
+ ++V ++ N + N+ D GNTPL + +E
Sbjct: 131 HFQVVKCLLDSNAK----------------------PNKKDLSGNTPLIYACSGGHHELV 168
Query: 372 DVMIRNTQVNYDAVNKQNVSVEHILDYEHIL 402
+++++ + NK N ++ + +H+
Sbjct: 169 ALLLQHGASINASNNKGNTALHEAVIEKHVF 199
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 12/175 (6%)
Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
++ + E T LH A + +D+VK + + TPL+ A MV+
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 206 LLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAY 265
L++ S G + +H AA T+ DQ G TP+ +AAY
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAA---QFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
Query: 266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
+ LLL + S N+ DK K TALH A GN ++ ++
Sbjct: 152 RTH--------SVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLL 197
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 21/134 (15%)
Query: 92 PSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK----------LPQHENEELESGVGA 141
PSL ++ +G + +H+AA+FGH+ IV +L+ + + P V
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 142 ARQMIKMT-------NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMA 194
R ++ KNTALH AV N V+ +L + + + N G++ L +A
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD-AQNIKGESALDLA 217
Query: 195 AESRSSDMVLALLE 208
+ ++ M+ L E
Sbjct: 218 KQRKNVWMINHLQE 231
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 50/128 (39%), Gaps = 21/128 (16%)
Query: 104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH 163
TPLH A + GH +V L++ P + + E + +H A
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADP------------------SLIDGEGCSCIHLAAQF 119
Query: 164 KNVDVVKILTKEDPDYRYSANNDGKTPLYMAA-ESRSSDMVLALLENSTSVSHEGPNGK- 221
+ +V L + D N G TPL AA + S D LL + SV+ K
Sbjct: 120 GHTSIVAYLIAKGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN 178
Query: 222 TALHAAAM 229
TALH A +
Sbjct: 179 TALHWAVL 186
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA GH IV L L +G + + T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVL-------------LRNGAD-----VNAVDTNGTTPLHLAA 76
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
++++V++L K D + + G TPLY+AA ++V LL++ V+ + GK
Sbjct: 77 SLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGK 135
Query: 222 TAL 224
TA
Sbjct: 136 TAF 138
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 50/113 (44%), Gaps = 8/113 (7%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + ++ G+TPL+MAA ++V LL N V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADAN-AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV 64
Query: 217 GPNGKTALHAAAM--KFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHG 267
NG T LH AA ++V+ D G TP++ AAY G
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEV-----LLKYGADVNAKDATGITPLYLAAYWG 112
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVE 123
+ E+L + + + V+ G TPLH+AA GH IV L++
Sbjct: 50 IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 349 NEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHI 395
N D G TPLH+ AAV E +V++RN + +AV+ + H+
Sbjct: 29 NAYDHYGRTPLHMAAAVGHLEIVEVLLRNG-ADVNAVDTNGTTPLHL 74
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 22/75 (29%)
Query: 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHV 361
T LH+AA G+ EIV+ ++ + +N D G TPLH+
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGAD----------------------VNAVDTNGTTPLHL 74
Query: 362 LAAVRRNEFYDVMIR 376
A++ E +V+++
Sbjct: 75 AASLGHLEIVEVLLK 89
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM--KFDLVDTAXXXXXXXXXXX 248
L AA + D V L+ N + G+T LH AA ++V+
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEV-----LLRNGAD 60
Query: 249 XXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKD-RKMTALHLA 307
D G TP+H AA G I YG +++ KD +T L+LA
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLLKYG------------ADVNAKDATGITPLYLA 108
Query: 308 AGQGNAEIVDAIISKNPEC 326
A G+ EIV+ ++ +
Sbjct: 109 AYWGHLEIVEVLLKHGADV 127
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 19/124 (15%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
+G TPLH+AA GH IV L++ + + + T LH A
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGA------------------DVNARDTDGWTPLHLA 87
Query: 161 VCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNG 220
+ ++++V++L K D + + G TPL++AA+ ++V LL++ V+ + G
Sbjct: 88 ADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFG 146
Query: 221 KTAL 224
KTA
Sbjct: 147 KTAF 150
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXX 250
L AA + D V L+ N V+ G T LH AA +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAW---IGHPEIVEVLLKHGADVN 74
Query: 251 XTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQ 310
D GWTP+H AA +G I YG D +A + +T LHLAA +
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGA-------DVNAQDA----YGLTPLHLAADR 123
Query: 311 GNAEIVDAIISKNPEC 326
G+ EIV+ ++ +
Sbjct: 124 GHLEIVEVLLKHGADV 139
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
+++ +T LH A + ++V++L K D + + DG TPL++AA++ ++V LL+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 210 STSVSHEGPNGKTALHAAA 228
V+ + G T LH AA
Sbjct: 103 GADVNAQDAYGLTPLHLAA 121
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 77 ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERA 125
+N E VE +L+ + Q +A G TPLH+AA GH IV L++
Sbjct: 89 DNGHLEIVEVLLKYGADVNAQ-DAYGLTPLHLAADRGHLEIVEVLLKHG 136
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 33/125 (26%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D GWTP+H AA++G I V +LL+ + + MT L LAA G+
Sbjct: 44 DASGWTPLHLAAFNGHLEI---------VEVLLKNGADVNAV--DHAGMTPLRLAALFGH 92
Query: 313 AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYD 372
EIV+ ++ + +N D G+TPLH+ A E +
Sbjct: 93 LEIVEVLLKNGAD----------------------VNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 373 VMIRN 377
V+++N
Sbjct: 131 VLLKN 135
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 21/127 (16%)
Query: 99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALH 158
+A G TPLH+AA GH IV L++ GA + ++ T L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKN---------------GAD---VNAVDHAGMTPLR 85
Query: 159 EAVCHKNVDVVKILTKEDPDYRYSANN-DGKTPLYMAAESRSSDMVLALLENSTSVSHEG 217
A ++++V++L K D +AN+ +G TPL++AA ++V LL+N V+ +
Sbjct: 86 LAALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 218 PNGKTAL 224
GKTA
Sbjct: 144 KFGKTAF 150
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A + ++++V++L K D + ++ G TPL +AA ++V LL+N V+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107
Query: 215 HEGPNGKTALHAAAM 229
G T LH AAM
Sbjct: 108 ANDMEGHTPLHLAAM 122
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 18/138 (13%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXX 248
L AA + D V L+ N V+ E +G T LH AA ++V+
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV-----LLKNGAD 72
Query: 249 XXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308
D G TP+ AA +G+ V +LL+ + A+ T LHLAA
Sbjct: 73 VNAVDHAGMTPLRLAA---------LFGHLEIVEVLLKNGADVN--ANDMEGHTPLHLAA 121
Query: 309 GQGNAEIVDAIISKNPEC 326
G+ EIV+ ++ +
Sbjct: 122 MFGHLEIVEVLLKNGADV 139
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
+ E+L K + + V+ G TPL +AA FGH IV L++ GA
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------------GAD- 105
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+ + E +T LH A ++++V++L K D + + GKT ++ ++ + D+
Sbjct: 106 --VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
D V+IL D + + G TPL++AA + ++V LL+N V+ G T L
Sbjct: 28 DEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRL 86
Query: 227 AAM--KFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHG 267
AA+ ++V+ D G TP+H AA G
Sbjct: 87 AALFGHLEIVEV-----LLKNGADVNANDMEGHTPLHLAAMFG 124
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA +GH IV L++ + + +T LH A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNG------------------ADVNAYDTLGSTPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
++++V++L K D +N G TPL++AA ++V LL+ V+ + GK
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 222 TAL 224
TA
Sbjct: 148 TAF 150
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + + G TPL++AA ++V LL+N V+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 215 HEGPNGKTALHAAA 228
+ NG T LH AA
Sbjct: 108 AKDDNGITPLHLAA 121
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 33/125 (26%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
D GWTP+H AAY +G+ V +LL+ + A T LHLAA G
Sbjct: 43 ADVVGWTPLHLAAY---------WGHLEIVEVLLKNGADVN--AYDTLGSTPLHLAAHFG 91
Query: 312 NAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFY 371
+ EIV+ ++ + +N D G TPLH+ A E
Sbjct: 92 HLEIVEVLLKNGAD----------------------VNAKDDNGITPLHLAANRGHLEIV 129
Query: 372 DVMIR 376
+V+++
Sbjct: 130 EVLLK 134
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 48/154 (31%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
D V+IL D +A+ G TPL++AA ++V LL+N V+
Sbjct: 28 DEVRILMANGADVN-AADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN------------ 74
Query: 227 AAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE 286
D G TP+H AA+ +G+ V +LL+
Sbjct: 75 ------------------------AYDTLGSTPLHLAAH---------FGHLEIVEVLLK 101
Query: 287 TDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320
+ A D +T LHLAA +G+ EIV+ ++
Sbjct: 102 NGADVN--AKDDNGITPLHLAANRGHLEIVEVLL 133
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
+ E+L K + + + G TPLH+AA FGH IV L++ N + ++G+
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG---ADVNAKDDNGI---- 114
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
T LH A ++++V++L K D + + GKT ++ + + D+
Sbjct: 115 -----------TPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISINNGNEDL 161
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 22/76 (28%)
Query: 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHV 361
T LHLAA G+ EIV+ ++ + +N D +G+TPLH+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGAD----------------------VNAYDTLGSTPLHL 86
Query: 362 LAAVRRNEFYDVMIRN 377
A E +V+++N
Sbjct: 87 AAHFGHLEIVEVLLKN 102
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 75 ERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134
E E + + + + + SL Q + G+T LH+AA++ S L+E
Sbjct: 31 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----------- 79
Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPL 191
A + +N T LH AV V +IL + D D R +DG TPL
Sbjct: 80 -------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM---HDGTTPL 129
Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALH 225
+AA M+ L+ + V+ GK+ALH
Sbjct: 130 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 352 DAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA 384
D MG TPLH + + ++IRN + DA
Sbjct: 88 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 120
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 24/154 (15%)
Query: 75 ERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134
E E + + + + + SL Q + G+T LH+AA++ S L+E
Sbjct: 30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----------- 78
Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPL 191
A + +N T LH AV V +IL + D D R +DG TPL
Sbjct: 79 -------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM---HDGTTPL 128
Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALH 225
+AA M+ L+ + V+ GK+ALH
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 352 DAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA 384
D MG TPLH + + ++IRN + DA
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
+EL+ + A + + T+ + TALH A + ++V+ L + ++ G +PL+
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
+AA + ++V ALL V+ NG T LH AA K
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 135
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D Y T +H AA GN V++LL ++++NI D + T LHLA +
Sbjct: 136 DHYDATAMHRAAAK---------GNLKMVHILLFY-KASTNIQDTEGN-TPLHLACDEER 184
Query: 313 AEIVDAIISKNPECY 327
E ++++ Y
Sbjct: 185 VEEAKFLVTQGASIY 199
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 31/187 (16%)
Query: 82 EFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141
E E IL SL + + T LH A GH+ IV FL++
Sbjct: 21 ELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 61
Query: 142 ARQMIKMTNNEKNTA----LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAES 197
+ + N+K+ A LH A ++VK L + + + N +G TPL+ AA
Sbjct: 62 ----LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASK 116
Query: 198 RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGW 257
++ + LLE + + TA+H AA K +L D G
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL---KMVHILLFYKASTNIQDTEGN 173
Query: 258 TPIHYAA 264
TP+H A
Sbjct: 174 TPLHLAC 180
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 25/140 (17%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTAL 157
VN G TPLH AA I L+E P ++ + TA+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD------------------HYDATAM 143
Query: 158 HEAVCHKNVDVVKILTKEDPDYRYSAN---NDGKTPLYMAAESRSSDMVLALLENSTSVS 214
H A N+ +V IL Y+ S N +G TPL++A + + L+ S+
Sbjct: 144 HRAAAKGNLKMVHILLF----YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199
Query: 215 HEGPNGKTALHAAAMKFDLV 234
E KT L A L+
Sbjct: 200 IENKEEKTPLQVAKGGLGLI 219
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 26/108 (24%)
Query: 288 DQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL 347
D+S + D+D + TALH A G+ EIV+ FL V
Sbjct: 29 DKSLATRTDQDSR-TALHWACSAGHTEIVE-------------------FLLQLGVP--- 65
Query: 348 INEGDAMGNTPLHVLAAVRRNEFYD-VMIRNTQVNYDAVNKQNVSVEH 394
+N+ D G +PLH+ A+ +E ++++ VN AVN+ + H
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN--AVNQNGCTPLH 111
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 15/195 (7%)
Query: 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLY 192
+EL+ + A + + T+ + TALH A + ++V+ L + ++ G +PL+
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 193 MAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXT 252
+AA + ++V ALL V+ NG T LH AA K
Sbjct: 79 IAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 135
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D Y T +H AA GN V++LL ++++NI D + T LHLA +
Sbjct: 136 DHYDATAMHRAAAK---------GNLKMVHILLFY-KASTNIQDTEGN-TPLHLACDEER 184
Query: 313 AEIVDAIISKNPECY 327
E ++++ Y
Sbjct: 185 VEEAKFLVTQGASIY 199
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 31/187 (16%)
Query: 82 EFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141
E E IL SL + + T LH A GH+ IV FL++
Sbjct: 21 ELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ------------------ 61
Query: 142 ARQMIKMTNNEKNTA----LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAES 197
+ + N+K+ A LH A ++VK L + + + N +G TPL+ AA
Sbjct: 62 ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASK 116
Query: 198 RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGW 257
++ + LLE + + TA+H AA K +L D G
Sbjct: 117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL---KMVHILLFYKASTNIQDTEGN 173
Query: 258 TPIHYAA 264
TP+H A
Sbjct: 174 TPLHLAC 180
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 70/175 (40%), Gaps = 29/175 (16%)
Query: 81 TEFVEEILEKCPSLLLQVNAKGD---TPLHVAAKFGHSGIVTFLVERAK----LPQHENE 133
TE VE +L+ L + VN K D +PLH+AA G IV L+ + + Q+
Sbjct: 53 TEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCT 108
Query: 134 ELESGVGAARQMIKMTNNEKN-----------TALHEAVCHKNVDVVKILTKEDPDYRYS 182
L R I + E TA+H A N+ +V IL Y+ S
Sbjct: 109 PLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKAS 164
Query: 183 AN---NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLV 234
N +G TPL++A + + L+ S+ E KT L A L+
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLI 219
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 288 DQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL 347
D+S + D+D + TALH A G+ EIV+ FL V
Sbjct: 29 DKSLATRTDQDSR-TALHWACSAGHTEIVE-------------------FLLQLGVP--- 65
Query: 348 INEGDAMGNTPLHVLAAVRRNEFYD-VMIRNTQVNYDAVNKQNVSVEH 394
+N+ D G +PLH+ A+ R+E ++++ VN AVN+ + H
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVN--AVNQNGCTPLH 111
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 79/193 (40%), Gaps = 21/193 (10%)
Query: 77 ENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136
E+ + + + ++L + L ++ G+T LH+AA+F + L L+
Sbjct: 26 EDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL-------------LD 72
Query: 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
+G A Q +N T LH AV + V +IL + + +DG TPL +AA
Sbjct: 73 AGADANSQ-----DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR 127
Query: 197 SRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYG 256
MV L+ ++ +GKTALH AA + +T D
Sbjct: 128 LAIEGMVEDLITADADINAADNSGKTALHWAAA---VNNTEAVNILLMHHANRDAQDDKD 184
Query: 257 WTPIHYAAYHGMY 269
TP+ AA G Y
Sbjct: 185 ETPLFLAAREGSY 197
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 19/108 (17%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPL +AA+ G+V L+ A I +N TALH A
Sbjct: 118 GTTPLILAARLAIEGMVEDLI------------------TADADINAADNSGKTALHWAA 159
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
N + V IL + R + ++ +TPL++AA S + ALL+N
Sbjct: 160 AVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDN 206
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 313 AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS------LINEG------DAMGNTPLH 360
A+++ ++++ E +D G LH A L++ G D G TPLH
Sbjct: 30 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 89
Query: 361 VLAAVRRNEFYDVMIRNTQVNYDA 384
A + +++RN N +A
Sbjct: 90 AAVAADAMGVFQILLRNRATNLNA 113
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 121 LVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180
L+E A+ Q + + GA + + + NT LH A + ++++V++L K D
Sbjct: 18 LLEAARAGQDDEVRILMANGAD---VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN 74
Query: 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTAL 224
+ +NDG TPL++AA ++V LL++ V+ + GKTA
Sbjct: 75 -AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
D V+IL D + + G TPL++AA+ ++V LL++ V+ +G T LH
Sbjct: 28 DEVRILMANGADVNAN-DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHL 86
Query: 227 AAM 229
AA+
Sbjct: 87 AAL 89
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S + K +AA G + + + + + NT LH+ + + +++ E VE +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL---AADYDHL--EIVEVL 66
Query: 88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERA 125
L+ + N G TPLH+AA FGH IV L++
Sbjct: 67 LKHGADVNAHDN-DGSTPLHLAALFGHLEIVEVLLKHG 103
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 24/145 (16%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
+ + + + SL Q + G+T LH+AA++ S L+E A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE------------------AS 48
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPLYMAAESRSS 200
+ +N T LH AV V +IL + D D R +DG TPL +AA
Sbjct: 49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM---HDGTTPLILAARLAVE 105
Query: 201 DMVLALLENSTSVSHEGPNGKTALH 225
M+ L+ + V+ GK+ALH
Sbjct: 106 GMLEDLINSHADVNAVDDLGKSALH 130
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 349 NEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA 384
N D MG TPLH + + ++IRN + DA
Sbjct: 52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
GDTPLH+A G+ V LV L Q EL+ + NN + T LH AV
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLV---NLFQQGGRELD-----------IYNNLRQTPLHLAV 54
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST--SVSHEGPN 219
VV++L + + G+T ++A E RS + ALL+++ ++ E N
Sbjct: 55 ITTLPSVVRLLVTAGASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 220 --GKTALHAA 227
G TALH A
Sbjct: 114 YDGLTALHVA 123
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
++ N + TALH AV + + V++L + D G++PL A E+ S MV
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 206 LLENSTSVSHEGPNGKTALHAAAMK 230
LL++ +V+ + +G +ALH+A+ +
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGR 193
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
+ + + + SL Q + G+T LH+AA++ S L LE+ A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL-------------LEASADAXI 50
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPLYMAAESRSS 200
Q +N T LH AV V +IL + D D R +DG TPL +AA
Sbjct: 51 Q-----DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARM---HDGTTPLILAARLALE 102
Query: 201 DMVLALLENSTSVSHEGPNGKTALH 225
M+ L+ + V+ GK+ALH
Sbjct: 103 GMLEDLINSHADVNAVDDLGKSALH 127
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 352 DAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA 384
D MG TPLH + + +++RN + DA
Sbjct: 52 DNMGRTPLHAAVSADAQGVFQILLRNRATDLDA 84
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 19/123 (15%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+ GH I+ L++ A + ++ T LH A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAA------------------DVNASDKSGWTPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221
++++V++L K D + + G TPL++AAE ++V LL+ V+ + GK
Sbjct: 89 YRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 222 TAL 224
TA
Sbjct: 148 TAF 150
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 11/75 (14%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
+D+ GWTP+H AAY G I YG D +A + + T LHLAA G
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLLKYG-------ADVNAMDY----QGYTPLHLAAEDG 124
Query: 312 NAEIVDAIISKNPEC 326
+ EIV+ ++ +
Sbjct: 125 HLEIVEVLLKYGADV 139
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH V + +++++++L K D S + G TPL++AA ++V LL+ V+
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 215 HEGPNGKTALHAAA 228
G T LH AA
Sbjct: 108 AMDYQGYTPLHLAA 121
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANN-DGKTPLYMAAESRSSDMVLALLENSTSVSH 215
L EA D V+IL D +AN+ G TPL++ + +++ LL+ + V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 216 EGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFY 275
+G T LH AA + L D G+TP+H AA G I
Sbjct: 76 SDKSGWTPLHLAAYRGHL---EIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Query: 276 GNYGT 280
YG
Sbjct: 133 LKYGA 137
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 86 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142
EI+E VNA G TPLH+AA GH IV L++ GA
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKY---------------GAD 105
Query: 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+ + + T LH A ++++V++L K D + + GKT ++ ++ + D+
Sbjct: 106 ---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVE 123
+ E+L K + + ++ +G TPLH+AA+ GH IV L++
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
+ N+E TALH AVC + ++VK L + + +A++DG TPL+ AA + + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 208 ENSTSV 213
E+ +V
Sbjct: 124 ESGAAV 129
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
+ N+E TALH AVC + ++VK L + + +A++DG TPL+ AA + + L+
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 208 ENSTSV 213
E+ +V
Sbjct: 124 ESGAAV 129
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
++E L K +L+ + + +G TPL A+ FG V FL+E P
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-------------- 63
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
+ E+ +AL A D+V +L + D D N G TPL A V
Sbjct: 64 ----ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVRGNHVKCV 118
Query: 204 LALLENSTSVSHEGPNGKTALHAA 227
ALL ++ E +G T + A
Sbjct: 119 EALLARGADLTTEADSGYTPMDLA 142
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXX 250
L AA + D V L+ N V+ G T LH AA+ L
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHL---EIVEVLLKHGADVD 74
Query: 251 XTDQYGWTPIHYAAYHGMYWINRFYGNYGT-VNLLLETDQSASNIADKDRKMTALHLAAG 309
D YG+TP+H AA G I YG VN D + S T LHLAA
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF---DMTGS---------TPLHLAAD 122
Query: 310 QGNAEIVDAII 320
+G+ EIV+ ++
Sbjct: 123 EGHLEIVEVLL 133
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
D V+IL D + +N G TPL++AA S ++V LL++ V G T LH
Sbjct: 28 DEVRILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHL 86
Query: 227 AAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYG 279
AAM L D G TP+H AA G I YG
Sbjct: 87 AAMTGHL---EIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG 136
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL------------I 348
+T LHLAA G+ EIV+ ++ + + D G+ LH A +T L +
Sbjct: 48 LTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 349 NEGDAMGNTPLHVLAAVRRNEFYDVMIR 376
N D G+TPLH+ A E +V+++
Sbjct: 107 NAFDMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 25/175 (14%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S + K +AA G + + + + T T LH+ +S E V E+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIV------EV 65
Query: 88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIK 147
L K + + + G TPLH+AA GH IV L++ GA
Sbjct: 66 LLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKY---------------GADVNAFD 110
Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
MT +T LH A ++++V++L K D + + GKT ++ ++ + D+
Sbjct: 111 MTG---STPLHLAADEGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
++E L K +L+ + + +G TPL A+ FG V FL+E P
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-------------- 63
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
+ E+ +AL A D+V +L + D D N G TPL A V
Sbjct: 64 ----ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN-GGTPLLYAVHGNHVKCV 118
Query: 204 LALLENSTSVSHEGPNGKTALHAA 227
ALL ++ E +G T + A
Sbjct: 119 EALLARGADLTTEADSGYTPMDLA 142
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 24/154 (15%)
Query: 75 ERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134
E E + + + + + SL Q + G T LH+AA + S L+E
Sbjct: 30 EEEEDAPAVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLE----------- 78
Query: 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE---DPDYRYSANNDGKTPL 191
A + +N T LH AV V +IL + D D R +DG TPL
Sbjct: 79 -------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM---HDGTTPL 128
Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALH 225
+AA M+ L+ + V+ GK+ALH
Sbjct: 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 352 DAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA 384
D MG TPLH + + ++IRN + DA
Sbjct: 87 DNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 25/141 (17%)
Query: 97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTA 156
Q A G+T LH+AA + + L+E A P+ E + S + E TA
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAA--PELVFEPMTSEL-----------YEGQTA 78
Query: 157 LHEAVCHKNVDVVKILTKEDPD---------YRYSANN---DGKTPLYMAAESRSSDMVL 204
LH AV ++NV++V+ L + Y +N G+ PL AA S ++V
Sbjct: 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138
Query: 205 ALLENSTSVSHEGPNGKTALH 225
L+E+ + + G T LH
Sbjct: 139 LLIEHGADIRAQDSLGNTVLH 159
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 25/107 (23%)
Query: 302 TALHLAAGQGNAEIVDAIISKNPECY-----ELVDNRGWNFLHYAV-------------V 343
TALH+A N +V A++++ + R N ++Y +
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 344 TRSLINEG------DAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA 384
R LI G D++GNT LH+L ++ N+ + + N ++YD
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLHIL-ILQPNKTFACQMYNLLLSYDG 182
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 37/128 (28%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAG 309
TD G TP+H AA YG+ V +LL+ D +A +I T LHLAA
Sbjct: 43 TDASGLTPLHLAAT---------YGHLEIVEVLLKHGADVNAIDIXGS----TPLHLAAL 89
Query: 310 QGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE 369
G+ EIV+ ++ + +N D G+TPLH+ A + E
Sbjct: 90 IGHLEIVEVLLKHGAD----------------------VNAVDTWGDTPLHLAAIMGHLE 127
Query: 370 FYDVMIRN 377
+V++++
Sbjct: 128 IVEVLLKH 135
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
D V+IL D + + G TPL++AA ++V LL++ V+ G T LH
Sbjct: 28 DEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHL 86
Query: 227 AAM--KFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYG 279
AA+ ++V+ D +G TP+H AA G I +G
Sbjct: 87 AALIGHLEIVEV-----LLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
+ E+L K + + ++ G TPLH+AA GH IV L++ GA
Sbjct: 62 IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH---------------GAD- 105
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+ + +T LH A ++++V++L K D + + GKT ++ ++ + D+
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 37/128 (28%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLE--TDQSASNIADKDRKMTALHLAAG 309
TD G TP+H AA YG+ V +LL+ D +A +I T LHLAA
Sbjct: 43 TDASGLTPLHLAAT---------YGHLEIVEVLLKHGADVNAIDIMGS----TPLHLAAL 89
Query: 310 QGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE 369
G+ EIV+ ++ + +N D G+TPLH+ A + E
Sbjct: 90 IGHLEIVEVLLKHGAD----------------------VNAVDTWGDTPLHLAAIMGHLE 127
Query: 370 FYDVMIRN 377
+V++++
Sbjct: 128 IVEVLLKH 135
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
D V+IL D + + G TPL++AA ++V LL++ V+ G T LH
Sbjct: 28 DEVRILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHL 86
Query: 227 AAM--KFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYG 279
AA+ ++V+ D +G TP+H AA G I +G
Sbjct: 87 AALIGHLEIVEV-----LLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG 136
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 19/119 (15%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAAR 143
+ E+L K + + ++ G TPLH+AA GH IV L++ GA
Sbjct: 62 IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH---------------GAD- 105
Query: 144 QMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
+ + +T LH A ++++V++L K D + + GKT ++ ++ + D+
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 161
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + N G+TPL++AA + ++V LL++ V+
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADVN 107
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANND--GKTPLYMAAESRSSDMVLALLENSTSVS 214
L EA D V+ILT D ND G TPL++AA ++V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNA---NDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74
Query: 215 HEGPNGKTALHAAA 228
G G+T LH AA
Sbjct: 75 ATGNTGRTPLHLAA 88
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 19/101 (18%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA GH IV L++ + T N T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGA------------------DVNATGNTGRTPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
++++V++L K D + + GKT ++ ++ + D+
Sbjct: 89 WADHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
TD G +P+H AA YG++ T +LL S DR T LH+AA +G
Sbjct: 30 TDWLGTSPLHLAAQ---------YGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEG 78
Query: 312 NAEIVDAII 320
+A IV+ ++
Sbjct: 79 HANIVEVLL 87
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 20/76 (26%)
Query: 104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA-ARQMIKMTNNEKNTALHEAVC 162
TPLH+AA GH+ IV L L+ G A+ M+KM TALH A
Sbjct: 69 TPLHMAASEGHANIVEVL-------------LKHGADVNAKDMLKM------TALHWATE 109
Query: 163 HKNVDVVKILTKEDPD 178
H + +VV++L K D
Sbjct: 110 HNHQEVVELLIKYGAD 125
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 134 ELESGVGAARQM--IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPL 191
ELE A ++M N E TALH A+C N +V L + S ++ G TPL
Sbjct: 33 ELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPL 91
Query: 192 YMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVD 235
+ AA + + +AL+++ ++ T L A F+ D
Sbjct: 92 HCAASCNDTVICMALVQHGAAIF------ATTLSDGATAFEKCD 129
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 140 GAARQMIKMTNNEK---NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAE 196
GAAR+ ++EK TALH A N +VK L E + + DGKTP+ +AA+
Sbjct: 268 GAARK-----DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQ 322
Query: 197 SRSSDMVLALLENSTSV 213
++V L++ SV
Sbjct: 323 EGRIEVVXYLIQQGASV 339
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXX 245
D TPL +A +R +V L + + + ++ALH AA D
Sbjct: 165 DENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQAAANRDFGXXVYXLNSTKL 224
Query: 246 XXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLET------DQSASNIADKDR 299
D+ G T + A+ N + LL+E D +A ++K +
Sbjct: 225 KGDIEELDRNGXTALXIVAH------NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278
Query: 300 KMTALHLAAGQGNAEIVDAIISK 322
TALH AA N IV ++ +
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGE 301
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D S ++ G+TPL++AA ++V LLE V+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 22/78 (28%)
Query: 298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNT 357
D +T LHLAA +G+ EIV+ ++ + +N D+ G T
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGAD----------------------VNASDSWGRT 82
Query: 358 PLHVLAAVRRNEFYDVMI 375
PLH+ A V E +V++
Sbjct: 83 PLHLAATVGHLEIVEVLL 100
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + ++ G TPL++AA+ ++V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 217 GPNGKTALHAAA 228
G+T LH AA
Sbjct: 77 DSWGRTPLHLAA 88
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 82 EFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVE 123
E VE +L+ VNA G TPLH+AA GH IV L+E
Sbjct: 61 EIVEVLLKHGAD----VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 57 LLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFG 113
+ +K NT LH +N E V+++L K VNA+ G+TPLH+AAK G
Sbjct: 3 MWGSKDGNTPLH-----NAAKNGHAEEVKKLLSKGA----DVNARSKDGNTPLHLAAKNG 53
Query: 114 HSGIVTFLVERA 125
H+ IV L+ +
Sbjct: 54 HAEIVKLLLAKG 65
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 154 NTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213
NT LH A + + + VK L + D + DG TPL++AA++ +++V LL V
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 214 SHEGPNGKTALHAA 227
+ +G T H A
Sbjct: 69 NARSKDGNTPEHLA 82
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 186 DGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAA 228
DG TPL+ AA++ ++ V LL V+ +G T LH AA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA 50
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANND-------------GKTPLYMAAESRSSD 201
TALH A+ +N +V +L + D + +AN D G+ PL +AA +
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 202 MVLALLENS---TSVSHEGPNGKTALHA 226
+V LL+NS +S G T LHA
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHA 190
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D S + G+TPL++AA ++V LLE V+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNT 357
D +T LHLAA +G+ EIV+ ++ + +N D G T
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGAD----------------------VNASDIWGRT 82
Query: 358 PLHVLAAVRRNEFYDVMI 375
PLH+ A V E +V++
Sbjct: 83 PLHLAATVGHLEIVEVLL 100
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + ++ G TPL++AA+ ++V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 217 GPNGKTALHAAA 228
G+T LH AA
Sbjct: 77 DIWGRTPLHLAA 88
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
Query: 82 EFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVE 123
E VE +L+ VNA G TPLH+AA GH IV L+E
Sbjct: 61 EIVEVLLKHGAD----VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 27/174 (15%)
Query: 81 TEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG-- 138
T+ V+EIL+ + +V+ +G+TPL++A I L++R +N +S
Sbjct: 18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL 77
Query: 139 -VGAARQ------MIKMTNNEKN-------TALHEAVCHKNVDVVKIL---TKEDPDYRY 181
GA + M+K + N AL A ++D VK+L +ED D++
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ- 136
Query: 182 SANNDGKTPLYMAAESRSS-----DMVLALLENSTSVSHEGPNGKTALHAAAMK 230
N+ G T L A R D+V L+EN S + +G+TA+ A K
Sbjct: 137 --NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQK 188
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + DG TPL++AA+ ++V LL+ V+ E
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE 76
Query: 217 GPNGKTALHAAAMK 230
G T LH AA++
Sbjct: 77 DNFGITPLHLAAIR 90
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + +N G TPL++AA ++V LL++ V+
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN 107
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGT-VNLLLETDQSASNIADKDRKMTALHLAAGQG 311
D+ G TP+H AA G I YG VN A+ + +T LHLAA +G
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGADVN------------AEDNFGITPLHLAAIRG 91
Query: 312 NAEIVDAIISKNPEC 326
+ EIV+ ++ +
Sbjct: 92 HLEIVEVLLKHGADV 106
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 19/101 (18%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH+AA+ GH IV L+ K N E G+ T LH A
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLL---KYGADVNAEDNFGI---------------TPLHLAA 88
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDM 202
++++V++L K D + + GKT ++ ++ + D+
Sbjct: 89 IRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANND------------GKTPLYMAAESRS 199
+ ++ALH A+ +++ VK+L + D A G+ PL +AA ++
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 200 SDMVLALLEN---STSVSHEGPNGKTALHAAAMKFD 232
D+V LLEN S+ G T LHA M D
Sbjct: 149 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 20/114 (17%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161
G TPLH A GH +V L++ + ++ T + ++ LH+A
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH------------------KALVNTTGYQNDSPLHDAA 84
Query: 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPL-YMAAESRSSDMVLALLENSTSVS 214
+ +VD+VK+L R + N G P+ Y ES S ++L S+S S
Sbjct: 85 KNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 14/102 (13%)
Query: 220 GKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINRFYGNYG 279
G+T LH A++K D+ D GWTP+H A HG +
Sbjct: 10 GETLLHIASIKGDI---PSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV-------- 58
Query: 280 TVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321
V LLL+ + ++ + LH AA G+ +IV ++S
Sbjct: 59 -VELLLQHKALVNTTGYQND--SPLHDAAKNGHVDIVKLLLS 97
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 84 VEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLV 122
V E+L + +L+ + D+PLH AAK GH IV L+
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A ++++V++L K D + + G+TPL++AA ++V LLE V+
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 22/78 (28%)
Query: 298 DRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNT 357
D +T LHLAA +G+ EIV+ ++ + +N D G T
Sbjct: 45 DAGVTPLHLAAKRGHLEIVEVLLKHGAD----------------------VNARDIWGRT 82
Query: 358 PLHVLAAVRRNEFYDVMI 375
PLH+ A V E +V++
Sbjct: 83 PLHLAATVGHLEIVEVLL 100
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + ++ G TPL++AA+ ++V LL++ V+
Sbjct: 18 LLEATRAGQDDEVRILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 217 GPNGKTALHAAA 228
G+T LH AA
Sbjct: 77 DIWGRTPLHLAA 88
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 82 EFVEEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSGIVTFLVE 123
E VE +L+ VNA+ G TPLH+AA GH IV L+E
Sbjct: 61 EIVEVLLKHGAD----VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 15/96 (15%)
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANND------------GKTPLYMAAESRS 199
+ ++ALH A+ +++ VK+L + D A G+ PL +AA ++
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 200 SDMVLALLEN---STSVSHEGPNGKTALHAAAMKFD 232
D+V LLEN S+ G T LHA M D
Sbjct: 162 WDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 197
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 167 DVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHA 226
+V+++L + D Y AN DG T L+ A + DMV L+EN +++ G LHA
Sbjct: 55 EVLRLLER-GADINY-ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA 112
Query: 227 AA 228
AA
Sbjct: 113 AA 114
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 185 NDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXX 244
+DG L A S ++ VL LLE +++ +G TALH A + D VD
Sbjct: 39 DDGAVFL-AACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMV--KFLVE 94
Query: 245 XXXXXXXTDQYGWTPIHYAAYHG 267
D GW P+H AA G
Sbjct: 95 NGANINQPDNEGWIPLHAAASCG 117
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 88/246 (35%), Gaps = 51/246 (20%)
Query: 81 TEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVG 140
TE V +LE+ + N G T LH A + +V FLVE G
Sbjct: 53 TEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVEN---------------G 96
Query: 141 AARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYM------- 193
A I +NE LH A +D+ + L + + + N++G TPL +
Sbjct: 97 AN---INQPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAME 152
Query: 194 ---------------AAESRSSDMVLALLENSTSVSH-----EGPNGKTALHAAAMKFDL 233
AA ++L + H +G TALH AA K
Sbjct: 153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY- 211
Query: 234 VDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMYWINR-FYGNYGTVNLLLETDQSAS 292
T D GWTP+H AA+ G R N + + + Q+A
Sbjct: 212 --TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Query: 293 NIADKD 298
++AD+D
Sbjct: 270 DVADED 275
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 21/128 (16%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
+G TPL AA G +V FL++ PQ + + +AL A
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------------LLGKGRESALSLA 92
Query: 161 VCHKNVDVVKILTKEDPDY-RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
D+VK+L D Y N G TPL A V LLE+ + E +
Sbjct: 93 CSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 150
Query: 220 GKTALHAA 227
G ++ A
Sbjct: 151 GYNSMDLA 158
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
TD+ G+TP+ +AA HG + F L + + + K R+ +AL LA +G
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEF----------LLQNGADPQLLGKGRE-SALSLACSKG 96
Query: 312 NAEIVDAIISKNPECYELVDNRGWNF---LHYAV 342
+IV ++ +C V+ WN L YAV
Sbjct: 97 YTDIVKMLL----DCGVDVNEYDWNGGTPLLYAV 126
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 21/128 (16%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
+G TPL AA G +V FL++ PQ + + +AL A
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------------LLGKGRESALSLA 74
Query: 161 VCHKNVDVVKILTKEDPDY-RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
D+VK+L D Y N G TPL A V LLE+ + E +
Sbjct: 75 CSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 132
Query: 220 GKTALHAA 227
G ++ A
Sbjct: 133 GYNSMDLA 140
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
TD+ G+TP+ +AA HG + F L + + + K R+ +AL LA +G
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEF----------LLQNGADPQLLGKGRE-SALSLACSKG 78
Query: 312 NAEIVDAIISKNPECYELVDNRGWNF---LHYAV 342
+IV ++ +C V+ WN L YAV
Sbjct: 79 YTDIVKMLL----DCGVDVNEYDWNGGTPLLYAV 108
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 21/128 (16%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEA 160
+G TPL AA G +V FL++ PQ + + +AL A
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------------LLGKGRESALSLA 76
Query: 161 VCHKNVDVVKILTKEDPDY-RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219
D+VK+L D Y N G TPL A V LLE+ + E +
Sbjct: 77 CSKGYTDIVKMLLDCGVDVNEYDWN--GGTPLLYAVHGNHVKCVKMLLESGADPTIETDS 134
Query: 220 GKTALHAA 227
G ++ A
Sbjct: 135 GYNSMDLA 142
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQG 311
TD+ G+TP+ +AA HG + F L + + + K R+ +AL LA +G
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEF----------LLQNGADPQLLGKGRE-SALSLACSKG 80
Query: 312 NAEIVDAIISKNPECYELVDNRGWNF---LHYAV 342
+IV ++ +C V+ WN L YAV
Sbjct: 81 YTDIVKMLL----DCGVDVNEYDWNGGTPLLYAV 110
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 33 KFFKAAADGNVEPFKDMA-REKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKC 91
+ AAA G+V+ + + RE + + T L + + ST E+L++
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG------STAIALELLKQG 58
Query: 92 PSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNN 151
S +Q + G +P+H AA+ G + LVE + + G GA
Sbjct: 59 ASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGA-----DVNVPDGTGA---------- 102
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
+H AV + VV L E +R A G TPL +A + + D+V
Sbjct: 103 ---LPIHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLV 149
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T LH A + ++++V++L K D + + G+TPL++ A ++V LL++ V+
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEI 87
S + K +AA G + + + + K T LH+ ++ E V E+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIV------EV 65
Query: 88 LEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERA 125
L K + + ++A G+TPLH+ A +GH IV L++
Sbjct: 66 LLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + G TPL++AA + ++V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI 76
Query: 217 GPNGKTALHAAAM 229
G+T LH AM
Sbjct: 77 DAIGETPLHLVAM 89
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 7/92 (7%)
Query: 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMK--FDLVDTAXXXXXXXXXXX 248
L AA + D V L+ N V+ E G T LH AAM ++V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEV-----LLKNGAD 72
Query: 249 XXXTDQYGWTPIHYAAYHGMYWINRFYGNYGT 280
D G TP+H A +G I +G
Sbjct: 73 VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGA 104
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 22/76 (28%)
Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLH 360
+T LHLAA + EIV+ ++ + +N DA+G TPLH
Sbjct: 48 LTPLHLAAMNDHLEIVEVLLKNGAD----------------------VNAIDAIGETPLH 85
Query: 361 VLAAVRRNEFYDVMIR 376
++A E +V+++
Sbjct: 86 LVAMYGHLEIVEVLLK 101
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 64 NTILH--INIISKERENVS--TEFVEEILEKCPSLLLQVNAK------GDTPLHVAAKFG 113
NT+LH + I REN T+ + +L KC L N + G +PL +AAK G
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236
Query: 114 HSGIVTFLVER 124
GI ++ R
Sbjct: 237 KIGIFQHIIRR 247
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 57/150 (38%), Gaps = 24/150 (16%)
Query: 64 NTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAK-------------GDTPLHVAA 110
T LHI I E +VE ++EK + Q + G+ PL +AA
Sbjct: 94 QTALHIAI-----ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148
Query: 111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVK 170
IV +L E + G ++ + +N + K D++
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENT---KFVTKMYDLLL 205
Query: 171 I-LTKEDPDYRYSA--NNDGKTPLYMAAES 197
I K PD A NNDG +PL MAA++
Sbjct: 206 IKCAKLFPDTNLEALLNNDGLSPLMMAAKT 235
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214
T L+ A H ++++V++L K D + + G TPL++AA ++ LL++ V+
Sbjct: 49 TPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107
Query: 215 HEGPNGKTAL 224
+ GKTA
Sbjct: 108 AQDKFGKTAF 117
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + G TPLY+A ++V LL+N V+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 217 GPNGKTALHAAAM 229
G T LH AA
Sbjct: 77 DAIGFTPLHLAAF 89
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D+YG TP++ A HG I V +LL+ + + T LHLAA G+
Sbjct: 44 DEYGLTPLYLATAHGHLEI---------VEVLLKNGADVNAV--DAIGFTPLHLAAFIGH 92
Query: 313 AEIVDAIISKNPEC 326
EI + ++ +
Sbjct: 93 LEIAEVLLKHGADV 106
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 22/76 (28%)
Query: 301 MTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLH 360
+T L+LA G+ EIV+ ++ + +N DA+G TPLH
Sbjct: 48 LTPLYLATAHGHLEIVEVLLKNGAD----------------------VNAVDAIGFTPLH 85
Query: 361 VLAAVRRNEFYDVMIR 376
+ A + E +V+++
Sbjct: 86 LAAFIGHLEIAEVLLK 101
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 28/172 (16%)
Query: 33 KFFKAAADGNVEPFKDMA-REKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKC 91
+ AAA G+V+ + + RE + + T L + + ST E+L++
Sbjct: 11 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG------STAIALELLKQG 64
Query: 92 PSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNN 151
S +Q + G +P+H AA+ G + LVE + + G GA
Sbjct: 65 ASPNVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGA-----DVNVPDGTGA---------- 108
Query: 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMV 203
+H AV + VV L E +R A G TPL +A + + D+V
Sbjct: 109 ---LPIHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLV 155
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 64 NTILH--INIISKERENVS--TEFVEEILEKCPSLLLQ------VNAKGDTPLHVAAKFG 113
NT+LH + I REN T+ + +L KC L +N G +PL +AAK G
Sbjct: 175 NTVLHALVAIADNTRENTKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTG 234
Query: 114 HSGIVTFLVER 124
GI ++ R
Sbjct: 235 KIGIFQHIIRR 245
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 180 RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTA 237
R ++++ +++AA +D V L+E S + + G TALH A KF VDTA
Sbjct: 13 RIKSDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC-KFGCVDTA 69
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 21/105 (20%)
Query: 106 LHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKN 165
+HVAA+ G + V L+E +GV Q N TALH A
Sbjct: 24 IHVAARKGQTDEVRRLIE-------------TGVSPTIQ-----NRFGCTALHLACKFGC 65
Query: 166 VDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS 210
VD K L + G+ P+++A + +D+V+AL+E +
Sbjct: 66 VDTAKYLASVGEVHSLW---HGQKPIHLAVXANKTDLVVALVEGA 107
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAK----------LPQH--------ENEELESGV 139
+ + TPLH AA + +V +L++ +P H E EL
Sbjct: 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 97
Query: 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPL 191
GA ++ + + K T LHEA ++ K+L + D N DG TPL
Sbjct: 98 GA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPL 145
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 3/132 (2%)
Query: 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL 207
M N+E + L EA +V+ VK L TPL+ AA +V LL
Sbjct: 3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 208 ENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHG 267
++ V + G LH A + + A D + +TP+H AA G
Sbjct: 63 QHGADVHAKDKGGLVPLHNAC-SYGHYEVA--ELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 268 MYWINRFYGNYG 279
Y I + +G
Sbjct: 120 KYEICKLLLQHG 131
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D+ G P+H A +G Y + +G V N+AD K T LH AA +G
Sbjct: 72 DKGGLVPLHNACSYGHYEVAELLVKHGAV----------VNVADL-WKFTPLHEAAAKGK 120
Query: 313 AEIVDAII 320
EI ++
Sbjct: 121 YEICKLLL 128
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAK----------LPQH--------ENEELESGV 139
+ + TPLH AA + +V +L++ +P H E EL
Sbjct: 42 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 101
Query: 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPL 191
GA ++ + + K T LHEA ++ K+L + D N DG TPL
Sbjct: 102 GA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPL 149
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 3/135 (2%)
Query: 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLA 205
I + N+E + L EA +V+ VK L TPL+ AA +V
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 206 LLENSTSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAY 265
LL++ V + G LH A + + A D + +TP+H AA
Sbjct: 65 LLQHGADVHAKDKGGLVPLHNAC-SYGHYEVA--ELLVKHGAVVNVADLWKFTPLHEAAA 121
Query: 266 HGMYWINRFYGNYGT 280
G Y I + +G
Sbjct: 122 KGKYEICKLLLQHGA 136
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D+ G P+H A +G Y + +G V N+AD K T LH AA +G
Sbjct: 76 DKGGLVPLHNACSYGHYEVAELLVKHGAV----------VNVADL-WKFTPLHEAAAKGK 124
Query: 313 AEIVDAII 320
EI ++
Sbjct: 125 YEICKLLL 132
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 22/112 (19%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAK----------LPQH--------ENEELESGV 139
+ + TPLH AA + +V +L++ +P H E EL
Sbjct: 40 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH 99
Query: 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPL 191
GA ++ + + K T LHEA ++ K+L + D N DG TPL
Sbjct: 100 GA---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPL 147
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGN 312
D+ G P+H A +G Y + +G V N+AD K T LH AA +G
Sbjct: 74 DKGGLVPLHNACSYGHYEVAELLVKHGAV----------VNVADL-WKFTPLHEAAAKGK 122
Query: 313 AEIVDAII 320
EI ++
Sbjct: 123 YEICKLLL 130
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 49/130 (37%), Gaps = 3/130 (2%)
Query: 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN 209
N+E + L EA +V+ VK L TPL+ AA +V LL++
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 66
Query: 210 STSVSHEGPNGKTALHAAAMKFDLVDTAXXXXXXXXXXXXXXTDQYGWTPIHYAAYHGMY 269
V + G LH A + + A D + +TP+H AA G Y
Sbjct: 67 GADVHAKDKGGLVPLHNAC-SYGHYEVA--ELLVKHGAVVNVADLWKFTPLHEAAAKGKY 123
Query: 270 WINRFYGNYG 279
I + +G
Sbjct: 124 EICKLLLQHG 133
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 155 TALHEAVCH---KNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211
TALH AV K V ++L ++ + N D TPL++AAE +D++ L ++
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGA 271
Query: 212 SVSHEGPNGKTALHAAAM 229
++ G+TALH AA+
Sbjct: 272 KMNALDSLGQTALHRAAL 289
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAV------VTRSLI 348
A RK T LHLAAG IV ++ + + D G LH A VT L+
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGGLVPLHNACSYGHYEVTELLL 111
Query: 349 NEG------DAMGNTPLHVLAAVRRNEFYDVMI 375
G D TPLH A+ R E +++
Sbjct: 112 KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK-----TPLYMAAESRSSDMVLALLEN 209
+ +HEA +V+ V L Y N D K TPLY+A E++ V LLE+
Sbjct: 103 SPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACENQQRACVKKLLES 156
Query: 210 STSVSHEGPNGKTALHAAA 228
V+ +G + LHA A
Sbjct: 157 GADVN-QGKGQDSPLHAVA 174
>pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
pdb|1XDI|B Chain B, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium
Tuberculosis
Length = 499
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 131 ENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK 188
E ++S G AR IK T + +T+ HEA DVV + T P SA DG+
Sbjct: 116 RGELIDSTPGLARHRIKATAADGSTSEHEA------DVVLVATGASPRILPSAQPDGE 167
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 22/185 (11%)
Query: 145 MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAES--RSSD- 201
++ + ++ NTALH +V H N VV+ L N G +P+ + A + ++ D
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDD 162
Query: 202 --MVLALLENSTSVSHEGPNGKTALHAAAM--KFDLVDTAXXXXXXXXXXXXXXTDQYGW 257
VL L + G+TAL A + D+V D G
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKA-----LLACEADVNVQDDDGS 217
Query: 258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVD 317
T + A HG I LLL ++ D+D TAL +A G +EI
Sbjct: 218 TALMCACEHGHKEI---------AGLLLAVPSCDISLTDRDGS-TALMVALDAGQSEIAS 267
Query: 318 AIISK 322
+ S+
Sbjct: 268 MLYSR 272
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D N G TPL++AA + ++V LLE V+ +
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 217 GPNGKTAL 224
GKTA
Sbjct: 69 DKFGKTAF 76
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVE 123
G TPLH+AA+ GH +V L+E
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D + + DG TPL++AA ++V LL+ V+ +
Sbjct: 6 LLEAARAGQDDEVRILMANGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 217 GPNGKTAL 224
GKTA
Sbjct: 65 DKFGKTAF 72
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 98 VNAK---GDTPLHVAAKFGHSGIVTFLVE 123
VNAK G TPLH+AA+ GH IV L++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILE 89
+D +AA GN+ ++ ++ K +T L+ ++ V F + +E
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 90 KCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERA 125
L Q N GDT LH AA G++ IV L+ +
Sbjct: 133 -----LNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANN---DGKTPLYMAAESRSSDMVLALL-ENSTS 212
LHEA N+ ++ E D R N G T LY A D+V L + +
Sbjct: 77 LHEAAKRGNLSWLR----ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 213 VSHEGPNGKTALHAAAMK 230
++ + G TALHAAA K
Sbjct: 133 LNQQNKLGDTALHAAAWK 150
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 27/124 (21%)
Query: 59 TAKTRNTILHINIISKERENVSTEFVE-------EILEKCPSLLLQVNA---KGDTPLHV 108
T+K R ++ N ++++ E++ E L +C + VN G T L+
Sbjct: 53 TSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYW 112
Query: 109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDV 168
A GH IV L + + ++ +L +TALH A D+
Sbjct: 113 ACHGGHKDIVEXLFTQPNIELNQQNKL-----------------GDTALHAAAWKGYADI 155
Query: 169 VKIL 172
V++L
Sbjct: 156 VQLL 159
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 99 NAKGDTPLHVAAKFGHSGIVTFLVE 123
N +G+TPL VA+K+G S IV L+E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH 163
TPL VA G + LVE + E++++E +TAL AV +
Sbjct: 37 TPLMVACMLGMENAIDKLVE--NFDKLEDKDIEG----------------STALIWAVKN 78
Query: 164 KNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTA 223
+ + + L + + + + GKTPL + S+M LLE+ +V+ G+T
Sbjct: 79 NRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP 137
Query: 224 LHAAA 228
L A+
Sbjct: 138 LIVAS 142
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 157 LHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216
L EA D V+IL D N G TPL++AA + ++V LLE V +
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 217 GPNGKTAL 224
GKTA
Sbjct: 87 DKFGKTAF 94
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 102 GDTPLHVAAKFGHSGIVTFLVE 123
G TPLH+AA+ GH +V L+E
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE 78
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVE 123
+G+ PLH+AAK GH +V FLV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVE 123
+G+ PLH+AAK GH +V FLV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVE 123
+G+ PLH+AAK GH +V FLV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVE 123
+G+ PLH+AAK GH +V FLV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 101 KGDTPLHVAAKFGHSGIVTFLVE 123
+G+ PLH+AAK GH +V FLV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK-----TPLYMAAESRSSDMVLALLEN 209
+ +HEA +V+ V L Y N D K TPLY+A E++ V LLE+
Sbjct: 159 SPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212
Query: 210 STSVSHEGPNGKTALHA 226
V+ +G + LHA
Sbjct: 213 GADVN-QGKGQDSPLHA 228
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKL 127
+++ G P+H+A + GHS +V+FL + L
Sbjct: 103 LDSTGSLPIHLAIREGHSSVVSFLAPESDL 132
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKL 127
+++ G P+H+A + GHS +V+FL + L
Sbjct: 105 LDSTGSLPIHLAIREGHSSVVSFLAPESDL 134
>pdb|4FXQ|A Chain A, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4FXQ|B Chain B, Full-Length Certhrax Toxin From Bacillus Cereus In Complex
With Inhibitor P6
pdb|4GF1|A Chain A, Crystal Structure Of Certhrax
pdb|4GF1|B Chain B, Crystal Structure Of Certhrax
Length = 460
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWN 336
NY + +L+ + QS SN DR L + +G A +S+ P YE++ NRG+
Sbjct: 367 NYMSTSLVQDPHQSYSN----DRYPILLEITIPEGVHGAYIADMSEYPGQYEMLINRGYT 422
Query: 337 F 337
F
Sbjct: 423 F 423
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVE 123
+N DTPLH+AA GH IV L++
Sbjct: 63 MNRGDDTPLHLAASHGHRDIVQKLLQ 88
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 15/87 (17%)
Query: 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANND------------GKTPLYMAAESRSSDM 202
+ALH A+ +++ VK+L + + A G+ PL +AA ++ D+
Sbjct: 97 SALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWDV 156
Query: 203 VLALLEN---STSVSHEGPNGKTALHA 226
V LLEN S+ G T LHA
Sbjct: 157 VSYLLENPHQPASLQATDSQGNTVLHA 183
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 98 VNAKGDTPLHVAAKFGHSGIVTFLVE 123
+N DTPLH+AA GH IV L++
Sbjct: 68 MNRGDDTPLHLAASHGHRDIVQKLLQ 93
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 276 GNYGTVNLLLETDQSASNIADKDRK--MTALHLAAGQGNAEIVDAIISKNPECYELVDNR 333
G+ V LL E + +++ +D + +TALH+AAG E+V+A++ + E+ D R
Sbjct: 87 GSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDER 142
Query: 334 GWNFLHYA 341
G L A
Sbjct: 143 GLTALELA 150
>pdb|4FK7|A Chain A, Crystal Structure Of Certhrax Catalytic Domain
Length = 229
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 277 NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWN 336
NY + +L+ + QS SN DR L + +G A +S+ P YE++ NRG+
Sbjct: 144 NYMSTSLVQDPHQSYSN----DRYPILLEITIPEGVHGAYIADMSEYPGQYEMLINRGYT 199
Query: 337 FLH 339
F +
Sbjct: 200 FKY 202
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 6/68 (8%)
Query: 276 GNYGTVNLLLETDQSASNIADKDRK--MTALHLAAGQGNAEIVDAIISKNPECYELVDNR 333
G+ V LL E + +++ +D + +TALH+AAG E+V+A++ + E+ D R
Sbjct: 88 GSDKCVRLLAE---AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDER 143
Query: 334 GWNFLHYA 341
G L A
Sbjct: 144 GLTALELA 151
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 169 VKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA 227
V++L + D + G T L+MAA ++V AL+E + E G TAL A
Sbjct: 93 VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 29 QMDPK---------FFKAAADGNVEPFKDMAREKIESLLTAKTRNTILH 68
QMDP FFKA GN+E +D KI S+ A R ++
Sbjct: 750 QMDPSEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIR 798
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 29 QMDPK---------FFKAAADGNVEPFKDMAREKIESLLTAKTRNTILH 68
QMDP FFKA GN+E +D KI S+ A R ++
Sbjct: 749 QMDPSEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIR 797
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,190,745
Number of Sequences: 62578
Number of extensions: 433291
Number of successful extensions: 2085
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 500
length of query: 405
length of database: 14,973,337
effective HSP length: 101
effective length of query: 304
effective length of database: 8,652,959
effective search space: 2630499536
effective search space used: 2630499536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)