Query 040751
Match_columns 405
No_of_seqs 234 out of 3333
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 18:32:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 4.7E-57 1.6E-61 421.0 27.8 350 30-402 14-390 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.6E-52 5.6E-57 390.3 30.6 320 52-403 3-358 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 6.7E-46 2.3E-50 333.7 26.2 292 30-385 25-330 (337)
4 1wdy_A 2-5A-dependent ribonucl 100.0 4.8E-44 1.6E-48 314.0 26.8 269 62-387 4-284 (285)
5 3utm_A Tankyrase-1; tankyrase, 100.0 5.5E-44 1.9E-48 323.2 25.8 297 47-399 8-323 (351)
6 4g8k_A 2-5A-dependent ribonucl 100.0 2.7E-43 9.3E-48 316.7 26.3 282 61-403 23-315 (337)
7 1wdy_A 2-5A-dependent ribonucl 100.0 2.4E-42 8.2E-47 303.1 24.2 262 31-331 6-283 (285)
8 2fo1_E LIN-12 protein; beta-ba 100.0 1.3E-43 4.3E-48 322.6 15.6 309 28-403 35-360 (373)
9 3d9h_A CDNA FLJ77766, highly s 100.0 1.1E-41 3.8E-46 298.3 23.3 262 62-384 14-282 (285)
10 3utm_A Tankyrase-1; tankyrase, 100.0 5.6E-42 1.9E-46 310.0 21.2 305 29-400 23-350 (351)
11 2fo1_E LIN-12 protein; beta-ba 100.0 5.1E-42 1.8E-46 312.0 16.6 279 33-381 69-371 (373)
12 2xai_A ASB-9, ankyrin repeat a 100.0 6.1E-41 2.1E-45 290.1 21.8 241 101-400 2-249 (261)
13 1oy3_D Transcription factor in 100.0 2.4E-41 8.3E-46 296.4 19.5 256 95-401 2-270 (282)
14 3d9h_A CDNA FLJ77766, highly s 100.0 1.1E-40 3.6E-45 292.1 22.8 254 99-399 12-265 (285)
15 3ljn_A Hypothetical protein; a 100.0 2.2E-41 7.4E-46 307.6 14.7 281 54-387 11-320 (364)
16 3ljn_A Hypothetical protein; a 100.0 7.9E-41 2.7E-45 303.9 17.9 250 94-401 12-301 (364)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 1.6E-40 5.4E-45 286.1 18.7 223 146-404 3-238 (253)
18 2xai_A ASB-9, ankyrin repeat a 100.0 4E-40 1.4E-44 284.9 21.2 258 62-376 2-259 (261)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 6.1E-40 2.1E-44 282.5 21.0 229 95-377 3-245 (253)
20 1k1a_A B-cell lymphoma 3-encod 100.0 7.2E-39 2.4E-43 274.0 21.7 222 146-403 2-230 (241)
21 1s70_B 130 kDa myosin-binding 100.0 4.2E-39 1.4E-43 284.6 19.6 240 99-400 37-276 (299)
22 3b7b_A Euchromatic histone-lys 100.0 8.3E-39 2.8E-43 272.9 20.7 220 146-402 4-223 (237)
23 3b7b_A Euchromatic histone-lys 100.0 3.3E-38 1.1E-42 269.1 23.5 228 94-376 3-231 (237)
24 1k1a_A B-cell lymphoma 3-encod 100.0 5.9E-39 2E-43 274.5 17.6 232 58-324 4-240 (241)
25 3aji_A 26S proteasome non-ATPa 100.0 4.3E-38 1.5E-42 267.4 21.9 229 99-382 3-231 (231)
26 3eu9_A Huntingtin-interacting 100.0 1.4E-37 4.6E-42 265.8 24.4 235 96-383 3-237 (240)
27 2dzn_A Probable 26S proteasome 100.0 1E-37 3.5E-42 264.5 20.0 217 153-403 2-222 (228)
28 4b93_B Ankyrin repeat domain-c 100.0 9.5E-39 3.2E-43 276.4 13.5 224 97-367 6-230 (269)
29 3aji_A 26S proteasome non-ATPa 100.0 1.5E-37 5.2E-42 264.0 19.0 225 63-325 6-230 (231)
30 1sw6_A Regulatory protein SWI6 100.0 1.5E-38 5.2E-43 283.8 11.5 277 63-400 23-327 (327)
31 4b93_B Ankyrin repeat domain-c 100.0 1.2E-37 3.9E-42 269.6 16.4 217 148-401 6-230 (269)
32 1oy3_D Transcription factor in 100.0 3.8E-37 1.3E-41 269.6 17.9 252 58-345 4-269 (282)
33 3kea_A K1L; tropism, ANK repea 100.0 3.6E-37 1.2E-41 269.5 16.0 227 94-387 23-252 (285)
34 2dzn_A Probable 26S proteasome 100.0 8E-37 2.8E-41 259.0 17.0 214 31-267 3-219 (228)
35 3eu9_A Huntingtin-interacting 100.0 2.1E-35 7.2E-40 252.2 22.6 231 58-326 4-236 (240)
36 3kea_A K1L; tropism, ANK repea 100.0 1.1E-36 3.8E-41 266.4 13.6 240 37-326 6-247 (285)
37 2f8y_A Notch homolog 1, transl 100.0 6.4E-36 2.2E-40 252.5 16.2 215 41-291 2-217 (223)
38 2f8y_A Notch homolog 1, transl 100.0 4.3E-35 1.5E-39 247.4 19.7 215 76-326 2-217 (223)
39 1s70_B 130 kDa myosin-binding 100.0 1.4E-36 4.7E-41 268.4 9.8 273 36-377 4-286 (299)
40 1ikn_D Protein (I-kappa-B-alph 100.0 8.4E-36 2.9E-40 254.0 11.4 217 148-400 3-230 (236)
41 1sw6_A Regulatory protein SWI6 100.0 2.4E-36 8.1E-41 269.5 5.3 259 38-344 27-326 (327)
42 2rfa_A Transient receptor pote 100.0 1.1E-33 3.8E-38 240.2 19.6 200 101-326 2-223 (232)
43 1ikn_D Protein (I-kappa-B-alph 100.0 2.2E-35 7.4E-40 251.4 7.6 165 59-245 4-174 (236)
44 4gpm_A Engineered protein OR26 100.0 3.4E-34 1.2E-38 229.2 12.3 161 30-215 4-164 (169)
45 2rfa_A Transient receptor pote 100.0 4.7E-33 1.6E-37 236.4 19.9 204 152-387 2-228 (232)
46 2pnn_A Transient receptor pote 100.0 2.7E-33 9.3E-38 243.8 17.9 223 54-303 4-270 (273)
47 3hra_A Ankyrin repeat family p 100.0 2.2E-32 7.4E-37 226.9 21.2 192 151-377 3-200 (201)
48 2etb_A Transient receptor pote 100.0 2.5E-33 8.5E-38 241.7 15.9 207 63-291 2-247 (256)
49 3hra_A Ankyrin repeat family p 100.0 2.2E-32 7.6E-37 226.9 20.8 199 99-323 2-201 (201)
50 2pnn_A Transient receptor pote 100.0 7.7E-33 2.6E-37 241.0 16.8 223 28-259 11-270 (273)
51 2etb_A Transient receptor pote 100.0 1.6E-32 5.4E-37 236.7 15.4 194 32-248 4-247 (256)
52 4gpm_A Engineered protein OR26 100.0 1.9E-31 6.4E-36 213.2 17.8 158 104-292 6-163 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 4.7E-32 1.6E-36 234.3 15.3 194 32-248 7-251 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 4.9E-32 1.7E-36 234.2 14.4 209 61-291 3-251 (260)
55 2aja_A Ankyrin repeat family p 100.0 1.7E-33 5.9E-38 253.2 -2.1 291 33-404 68-364 (376)
56 4hbd_A KN motif and ankyrin re 100.0 1.5E-30 5.3E-35 226.2 13.3 191 60-275 73-269 (276)
57 3v30_A DNA-binding protein rfx 100.0 1.8E-29 6.2E-34 203.8 17.1 170 63-259 2-171 (172)
58 2rfm_A Putative ankyrin repeat 100.0 3.3E-29 1.1E-33 206.1 18.1 162 57-245 29-190 (192)
59 2rfm_A Putative ankyrin repeat 100.0 2.8E-29 9.6E-34 206.5 17.3 163 95-288 28-190 (192)
60 4hbd_A KN motif and ankyrin re 100.0 7.8E-30 2.7E-34 221.8 13.6 188 32-245 78-273 (276)
61 3v31_A Ankyrin repeat family A 100.0 5.2E-29 1.8E-33 200.1 16.7 160 62-248 2-161 (167)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.4E-30 2.2E-34 204.3 11.0 158 30-212 5-162 (162)
63 1ihb_A P18-INK4C(INK6), cyclin 100.0 6.3E-29 2.1E-33 198.6 15.5 159 101-290 4-162 (162)
64 2vge_A RELA-associated inhibit 100.0 8.6E-32 2.9E-36 227.1 -1.4 198 94-325 13-214 (229)
65 3v30_A DNA-binding protein rfx 100.0 1.4E-29 4.7E-34 204.5 10.4 167 32-223 4-171 (172)
66 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.2E-29 1.1E-33 201.6 12.1 155 62-243 13-167 (169)
67 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.5E-28 8.6E-33 196.3 16.3 155 31-210 15-169 (169)
68 3v31_A Ankyrin repeat family A 100.0 2.8E-28 9.5E-33 195.8 16.3 160 101-291 2-161 (167)
69 2aja_A Ankyrin repeat family p 100.0 7.2E-32 2.5E-36 242.6 -5.8 260 31-377 93-371 (376)
70 1awc_B Protein (GA binding pro 100.0 7.1E-28 2.4E-32 190.4 15.3 151 63-241 2-152 (153)
71 3twr_A Tankyrase-2; ankyrin re 100.0 2.8E-28 9.5E-33 195.4 12.0 159 60-245 5-163 (165)
72 2vge_A RELA-associated inhibit 100.0 3.2E-30 1.1E-34 217.5 0.6 196 169-403 1-202 (229)
73 3f6q_A Integrin-linked protein 100.0 6.5E-28 2.2E-32 195.9 14.0 160 62-247 4-163 (179)
74 1awc_B Protein (GA binding pro 100.0 2E-27 6.8E-32 187.8 15.9 149 102-273 2-150 (153)
75 3f6q_A Integrin-linked protein 99.9 2.3E-28 8E-33 198.6 8.8 167 29-220 4-171 (179)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.1E-27 7E-32 188.4 14.0 153 63-243 2-154 (156)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.8E-27 1.6E-31 186.3 15.6 154 102-287 2-155 (156)
78 3twr_A Tankyrase-2; ankyrin re 99.9 1.5E-27 5E-32 191.2 11.1 161 98-289 4-164 (165)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-27 3.6E-32 203.9 7.6 177 62-267 4-192 (239)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.4E-28 2.2E-32 205.3 4.9 178 30-233 5-194 (239)
81 1d9s_A Cyclin-dependent kinase 99.9 4.6E-26 1.6E-30 176.1 14.0 133 92-246 2-135 (136)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-25 3.7E-30 178.3 11.3 145 96-263 6-151 (156)
83 3t8k_A Uncharacterized protein 99.9 5.5E-26 1.9E-30 184.6 7.6 155 63-246 6-178 (186)
84 3t8k_A Uncharacterized protein 99.9 3.4E-26 1.1E-30 185.9 6.1 159 32-216 8-183 (186)
85 1bi7_B P16INK4A, MTS1, multipl 99.9 1.1E-25 3.9E-30 178.2 7.7 144 58-227 7-151 (156)
86 1d9s_A Cyclin-dependent kinase 99.9 1.4E-25 4.6E-30 173.4 6.6 130 57-212 6-136 (136)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 2.2E-24 7.5E-29 166.6 13.2 126 98-244 10-135 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 5.7E-24 1.9E-28 162.0 15.1 125 101-246 1-125 (126)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.3E-23 4.3E-28 160.1 14.2 126 62-212 1-126 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 9E-24 3.1E-28 163.1 12.4 127 59-210 10-136 (136)
91 3c5r_A BARD-1, BRCA1-associate 99.9 3.4E-24 1.1E-28 165.8 8.8 126 97-243 5-130 (137)
92 3ui2_A Signal recognition part 99.9 2.2E-24 7.4E-29 183.9 6.5 170 63-289 15-184 (244)
93 3deo_A Signal recognition part 99.9 2.9E-23 9.8E-28 168.9 10.9 142 98-287 40-181 (183)
94 3aaa_C Myotrophin, protein V-1 99.9 4.6E-23 1.6E-27 156.1 10.2 112 99-229 4-115 (123)
95 3deo_A Signal recognition part 99.9 1.3E-22 4.5E-27 165.0 11.7 140 150-322 41-181 (183)
96 3c5r_A BARD-1, BRCA1-associate 99.9 1.5E-23 5.3E-28 162.1 5.0 133 53-211 1-133 (137)
97 2b0o_E UPLC1; arfgap, structur 99.9 3.3E-22 1.1E-26 175.3 13.7 147 100-268 149-298 (301)
98 3ui2_A Signal recognition part 99.9 1.7E-22 5.6E-27 172.2 11.1 143 150-325 42-185 (244)
99 3ehr_A Osteoclast-stimulating 99.9 7.4E-23 2.5E-27 172.1 8.3 130 97-247 68-198 (222)
100 2b0o_E UPLC1; arfgap, structur 99.9 4.6E-22 1.6E-26 174.4 9.7 140 63-233 151-299 (301)
101 3ehr_A Osteoclast-stimulating 99.9 2.7E-22 9.3E-27 168.6 7.2 138 58-220 68-206 (222)
102 1n0q_A 3ANK, 3 ankyrin repeats 99.9 6E-21 2.1E-25 136.6 11.9 93 101-212 1-93 (93)
103 3aaa_C Myotrophin, protein V-1 99.9 2.5E-21 8.5E-26 146.6 10.2 114 150-267 4-117 (123)
104 2l6b_A NR1C; ankyrin, consensu 99.8 5.3E-21 1.8E-25 142.9 8.8 109 97-224 4-112 (115)
105 3jue_A Arfgap with coiled-coil 99.8 1.5E-20 5.3E-25 168.3 13.3 147 99-266 196-347 (368)
106 3lvq_E ARF-GAP with SH3 domain 99.8 5.7E-20 2E-24 172.9 14.4 142 102-265 132-276 (497)
107 1dcq_A PYK2-associated protein 99.8 6.4E-20 2.2E-24 158.9 13.6 181 98-290 62-263 (278)
108 3lvq_E ARF-GAP with SH3 domain 99.8 4.6E-20 1.6E-24 173.5 13.5 136 64-230 133-277 (497)
109 1dcq_A PYK2-associated protein 99.8 2E-19 6.7E-24 155.9 15.2 130 103-247 131-263 (278)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.8 8.7E-20 3E-24 130.5 10.7 92 152-246 1-92 (93)
111 3jue_A Arfgap with coiled-coil 99.8 5.5E-20 1.9E-24 164.7 11.5 144 62-230 198-347 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.8 3E-19 1E-23 133.3 8.3 109 148-260 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 1.1E-17 3.8E-22 123.5 10.2 93 95-206 17-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 4.7E-17 1.6E-21 120.1 10.0 93 146-241 17-109 (110)
115 1gp8_A Protein (scaffolding pr 79.7 0.61 2.1E-05 25.1 0.9 25 27-51 10-34 (40)
116 3gvo_A Pumilio 2, pumilio homo 48.4 66 0.0023 27.9 8.1 189 34-243 41-238 (351)
117 3mkq_B Coatomer subunit alpha; 38.2 54 0.0019 25.2 5.1 21 155-175 120-140 (177)
118 3zrh_A Ubiquitin thioesterase 26.1 1.8E+02 0.0063 25.7 6.8 62 107-174 27-90 (454)
119 4g26_A Pentatricopeptide repea 25.8 1.8E+02 0.0061 26.6 7.4 162 26-214 25-209 (501)
120 3zrh_A Ubiquitin thioesterase 24.3 2.9E+02 0.0099 24.5 7.6 63 307-377 29-91 (454)
121 3mkq_B Coatomer subunit alpha; 22.1 2.7E+02 0.0092 21.3 8.1 129 32-208 10-139 (177)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.7e-57 Score=421.02 Aligned_cols=350 Identities=23% Similarity=0.308 Sum_probs=291.8
Q ss_pred CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751 30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA 109 (405)
Q Consensus 30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A 109 (405)
-.+|||.|+..|++++|++|+++|.+++..+..|.||||+| +..|+.+++++|++. +..++..+..|.||||+|
T Consensus 14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 14 GLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHH
Confidence 35679999999999999999999988887888899999999 999999999999873 667788888999999999
Q ss_pred HHhCcHHHHHHHHHccCCCCCchhHHhhhh---------hHHHHH------hhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751 110 AKFGHSGIVTFLVERAKLPQHENEELESGV---------GAARQM------IKMTNNEKNTALHEAVCHKNVDVVKILTK 174 (405)
Q Consensus 110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~---------~~~~~~------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 174 (405)
+..|+.++|++|+++|++++..+....+.+ ...+.+ .+..+..|.||||+|+..|+.+++++|++
T Consensus 88 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 167 (437)
T 1n11_A 88 ARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167 (437)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999999999999988764433221111 111222 22345678888888888888888888888
Q ss_pred cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc
Q 040751 175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ 254 (405)
Q Consensus 175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~ 254 (405)
+|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++. +++++|++.+.. ++..+.
T Consensus 168 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~-~~~~~~ 243 (437)
T 1n11_A 168 RDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQV--EVARSLLQYGGS-ANAESV 243 (437)
T ss_dssp TTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCT
T ss_pred CCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CCCCCC
Confidence 888877 6777888888888888888888888888888888888888888888888888 888888887665 677778
Q ss_pred CCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCC
Q 040751 255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRG 334 (405)
Q Consensus 255 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g 334 (405)
.|.||||+|+..| +.+++++|++.+.+. +... ..|.||||+|+..|+.+++++|+++|+++ +.++..|
T Consensus 244 ~g~t~L~~A~~~g---------~~~~v~~Ll~~~~~~-~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g 311 (437)
T 1n11_A 244 QGVTPLHLAAQEG---------HAEMVALLLSKQANG-NLGN-KSGLTPLHLVAQEGHVPVADVLIKHGVMV-DATTRMG 311 (437)
T ss_dssp TCCCHHHHHHHTT---------CHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCSSC
T ss_pred CCCCHHHHHHHCC---------CHHHHHHHHhcCCCC-CCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCccC-CCCCCCC
Confidence 8888888888887 557899999988876 3333 48899999999999999999999999987 7889999
Q ss_pred ChHHHHHHHhcc------------ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccccc
Q 040751 335 WNFLHYAVVTRS------------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHIL 402 (405)
Q Consensus 335 ~t~l~~a~~~~~------------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~ 402 (405)
.||||+|+..++ ++|.+|..|.||||+|++.|+.+++++|+++ |++++.+|..|+||+++|.+.++.
T Consensus 312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~-ga~~~~~~~~g~t~l~~A~~~g~~ 390 (437)
T 1n11_A 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGTTPLAIAKRLGYI 390 (437)
T ss_dssp CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSCCCCSSSCCHHHHHHHTTCH
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC-cCCCCCCCCCCCCHHHHHHHcCcH
Confidence 999999998887 6888999999999999999999999999997 999999999999999999988764
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-52 Score=390.34 Aligned_cols=320 Identities=27% Similarity=0.321 Sum_probs=252.6
Q ss_pred HHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCc
Q 040751 52 EKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHE 131 (405)
Q Consensus 52 ~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 131 (405)
.|++.+..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|+..|+.++|++|+++|++++
T Consensus 3 ~g~~~~~~~~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-- 74 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVA--SFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-- 74 (437)
T ss_dssp ------------CCHHHHH--HHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS--
T ss_pred CCCCccccCCCCCCHHHHH--HHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--
Confidence 4566677788899999999 99999999999987 367788889999999999999999999999999999865
Q ss_pred hhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 040751 132 NEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211 (405)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~ 211 (405)
.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++++
T Consensus 75 ----------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 75 ----------------AKAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATTAGHTPLHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp ----------------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ----------------CCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 566677777777777777777777777777766 566677777777777777777777777777
Q ss_pred CCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhc----------------
Q 040751 212 SVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY---------------- 275 (405)
Q Consensus 212 ~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l---------------- 275 (405)
+++..+..|.||||.|+..|+. +++++|++.+.. ++..+..|.||||+|+..|+.++.+++
T Consensus 138 ~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 214 (437)
T 1n11_A 138 SQACMTKKGFTPLHVAAKYGKV--RVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214 (437)
T ss_dssp CSCCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCC
T ss_pred CCcCCCCCCCCHHHHHHHcCCH--HHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCC
Confidence 7777677777777777777777 777777766554 556666677777777777766555544
Q ss_pred --------cccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc-
Q 040751 276 --------GNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS- 346 (405)
Q Consensus 276 --------~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~- 346 (405)
++.+++++|++.+.+. +... ..|.||||+|+..|+.+++++|++++++. +..+..|.||||+|+..++
T Consensus 215 ~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~ 291 (437)
T 1n11_A 215 PLHIAAKQNQVEVARSLLQYGGSA-NAES-VQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHV 291 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCH
Confidence 3567888888888766 3333 47889999999999999999999999887 7789999999999988877
Q ss_pred -----------ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751 347 -----------LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD 403 (405)
Q Consensus 347 -----------~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~ 403 (405)
.++.++..|.||||+|+..|+.+++++|+++ |++++.+|..|+||||+|++.++.+
T Consensus 292 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gad~n~~~~~g~t~L~~A~~~g~~~ 358 (437)
T 1n11_A 292 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGYSPLHQAAQQGHTD 358 (437)
T ss_dssp HHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHCChHH
Confidence 5788899999999999999999999999998 9999999999999999999988654
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.7e-46 Score=333.69 Aligned_cols=292 Identities=20% Similarity=0.187 Sum_probs=252.5
Q ss_pred CCHHHHHHhhcCCCchhhhhHHHHHHHhhhh-ccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHH
Q 040751 30 MDPKFFKAAADGNVEPFKDMAREKIESLLTA-KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHV 108 (405)
Q Consensus 30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~ 108 (405)
-.++||.|++.|++++|++||+.|++++..+ ..|+||||+| +..|+.+++++|++ .+..++..+..+.+|++.
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~~~iv~~Ll~----~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHH
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCCHHHHHHHHH----cCCchhhhccCCCchhHH
Confidence 3578999999999999999999999988555 4599999999 99999999999988 578888999999999999
Q ss_pred HHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc-------
Q 040751 109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY------- 181 (405)
Q Consensus 109 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~------- 181 (405)
++..+...++..+++++++. +..+..|.||||+|+..|+.+++++|+++|++++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~------------------~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~ 160 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADV------------------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 160 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC--
T ss_pred HHhcccchhhHHhhhccchh------------------hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccc
Confidence 99999999999999999884 48899999999999999999999999999988762
Q ss_pred --ccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCc--cHHHHHHHHHhhhhhhhhcccCC
Q 040751 182 --SANNDGKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDL--VDTALRKLLEKKENLIKETDQYG 256 (405)
Q Consensus 182 --~~~~~g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~--~~~~v~~Ll~~~~~~~~~~~~~~ 256 (405)
..+..|.||||+|+..|+.+++++|++ .|++++.++..|.|+++.++..+.. ...++++|++.+.+ ++.++..|
T Consensus 161 ~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~~g 239 (337)
T 4g8k_A 161 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERG 239 (337)
T ss_dssp ---CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCGGG
T ss_pred cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCCCC
Confidence 234568999999999999999999995 5999999999999999988876543 12466777777655 78899999
Q ss_pred CCHHHHHHHcChhhhhhhccccchhHHHHhh-cccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 040751 257 WTPIHYAAYHGMYWINRFYGNYGTVNLLLET-DQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335 (405)
Q Consensus 257 ~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~-~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 335 (405)
.||||+|+..| +.++++.|++. +.++ +..+ ..|+||||+|++.|+.+++++|+++|+++
T Consensus 240 ~t~L~~a~~~~---------~~~~v~~Ll~~~~~~v-n~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~--------- 299 (337)
T 4g8k_A 240 KTPLILAVEKK---------HLGLVQRLLEQEHIEI-NDTD-SDGKTALLLAVELKLKKIAELLCKRGAST--------- 299 (337)
T ss_dssp CCHHHHHHHTT---------CHHHHHHHHTSTTCCT-TCBC-TTSCBHHHHHHHTTCHHHHHHHHTTSCSS---------
T ss_pred CCHHHHHHHhh---------hhHHHHHHHHhcCCcc-cCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCC---------
Confidence 99999999998 45688888875 4444 4444 48999999999999999999999999875
Q ss_pred hHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccc
Q 040751 336 NFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAV 385 (405)
Q Consensus 336 t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~ 385 (405)
+..+|||+|++.|+.++|++||++ ||++|..
T Consensus 300 ------------------n~~~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~ 330 (337)
T 4g8k_A 300 ------------------DCGDLVMTARRNYDHSLVKVLLSH-GAKEDFH 330 (337)
T ss_dssp ------------------TTCCHHHHHHHTTCHHHHHHHHHT-TCCC---
T ss_pred ------------------CCCCHHHHHHHcCCHHHHHHHHHC-cCCCCCC
Confidence 234699999999999999999998 9999964
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.8e-44 Score=313.98 Aligned_cols=269 Identities=20% Similarity=0.229 Sum_probs=230.6
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccc-cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhh
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQV-NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVG 140 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 140 (405)
+|.||||+| +..|+.+++++|++ .+..++.. +..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~g~~~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------- 66 (285)
T 1wdy_A 4 EDNHLLIKA--VQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV----------- 66 (285)
T ss_dssp HHHHHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-----------
T ss_pred ccchHHHHH--HHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-----------
Confidence 488999999 99999999988877 34556655 7778999999999999999999999998854
Q ss_pred HHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----
Q 040751 141 AARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE---- 216 (405)
Q Consensus 141 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~---- 216 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 67 -------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 138 (285)
T 1wdy_A 67 -------LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTK 138 (285)
T ss_dssp -------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC
T ss_pred -------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccH
Confidence 678889999999999999999999999999987 77888999999999999999999999999998877
Q ss_pred ------CCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccc
Q 040751 217 ------GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQS 290 (405)
Q Consensus 217 ------~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~ 290 (405)
+..|.||||.|+..++. +++++|++..+..++..+..|.||||+|+..+..... .+++++|++.+.+
T Consensus 139 ~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 139 EDQERLRKGGATALMDAAEKGHV--EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-----EAITHLLLDHGAD 211 (285)
T ss_dssp HHHHHTTCCCCCHHHHHHHHTCH--HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH-----HHHHHHHHHTTCC
T ss_pred HHHHhhccCCCcHHHHHHHcCCH--HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH-----HHHHHHHHHcCCC
Confidence 67789999999999999 9999999885555788889999999999988742111 4688999999987
Q ss_pred ccccccccCCccHHHHHHhcCCHHHHHHHHh-cCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcH
Q 040751 291 ASNIADKDRKMTALHLAAGQGNAEIVDAIIS-KNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE 369 (405)
Q Consensus 291 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~ 369 (405)
+ +... ..|.||||+|+..++.+++++|++ .|++ ++.+|..|.||||+|++.|+.+
T Consensus 212 ~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----------------------~~~~~~~g~t~l~~A~~~~~~~ 267 (285)
T 1wdy_A 212 V-NVRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIE----------------------INDTDSDGKTALLLAVELKLKK 267 (285)
T ss_dssp S-SCCC-TTSCCHHHHHHHTTCHHHHHHHHHSSSCC----------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred C-CCcC-CCCCcHHHHHHHcCCHHHHHHHHhccCCC----------------------ccccCCCCCcHHHHHHHcCcHH
Confidence 6 3333 489999999999999999999999 5555 5667788999999999999999
Q ss_pred HHHHHHhccccccccccC
Q 040751 370 FYDVMIRNTQVNYDAVNK 387 (405)
Q Consensus 370 ~v~~Ll~~~g~d~~~~~~ 387 (405)
++++|+++ |++++.+|.
T Consensus 268 i~~~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 268 IAELLCKR-GASTDCGDL 284 (285)
T ss_dssp HHHHHHHH-SSCSCCSSC
T ss_pred HHHHHHHc-CCCCCcccc
Confidence 99999998 999998874
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.5e-44 Score=323.23 Aligned_cols=297 Identities=19% Similarity=0.176 Sum_probs=234.2
Q ss_pred hhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccC
Q 040751 47 KDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK 126 (405)
Q Consensus 47 ~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 126 (405)
..+++.+.+....+..+.++||.| +..|+.+.++.++. ..+..++..|..|.||||+|+..|+.++|++|+++|+
T Consensus 8 l~l~~~~~~~~~~~~~~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 82 (351)
T 3utm_A 8 LDLADPSAKAVLTGEYKKDELLEA--ARSGNEEKLMALLT---PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82 (351)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hhccCCceeeeeeccccchhHHHH--HHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 345566677777777799999999 99999888877754 4567778888999999999999999999999999998
Q ss_pred CCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040751 127 LPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206 (405)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L 206 (405)
+++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|
T Consensus 83 ~~~------------------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~L 143 (351)
T 3utm_A 83 DVH------------------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASKNRVEVCSLL 143 (351)
T ss_dssp CTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CCC------------------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 854 778889999999999999999999999999987 6788899999999999999999999
Q ss_pred HHcCCCCcccCCCCCcHHHHHHhcCCc-------------------cHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751 207 LENSTSVSHEGPNGKTALHAAAMKFDL-------------------VDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267 (405)
Q Consensus 207 l~~g~~~~~~~~~~~t~L~~a~~~~~~-------------------~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~ 267 (405)
+++|++++..+..+.+|++.|+..+.. ....+..++..... ....+..|.||||+|+..+
T Consensus 144 l~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t~L~~A~~~~ 222 (351)
T 3utm_A 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHETALHCAVASL 222 (351)
T ss_dssp HHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCCHHHHHHHCC
T ss_pred HHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCCHHHHHHHHh
Confidence 999999999999999988876544333 00333333333222 1234566778888888774
Q ss_pred hhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccc
Q 040751 268 MYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSL 347 (405)
Q Consensus 268 ~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~ 347 (405)
+.. ..+++++|++.+.++ +..+ ..|.||||+|+..|+.+++++|+++|++
T Consensus 223 ~~~------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---------------------- 272 (351)
T 3utm_A 223 HPK------RKQVAELLLRKGANV-NEKN-KDFMTPLHVAAERAHNDVMEVLHKHGAK---------------------- 272 (351)
T ss_dssp STT------HHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------
T ss_pred Ccc------HHHHHHHHHHcCCCc-CCcC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------------
Confidence 321 335777888877766 3333 3777888888888888888888887765
Q ss_pred cccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751 348 INEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE 399 (405)
Q Consensus 348 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~ 399 (405)
++.+|..|+||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|.+.
T Consensus 273 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~~~~g~tal~~a~~~ 323 (351)
T 3utm_A 273 MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSIISLQGFTAAQMGNEA 323 (351)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHSCHH
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCChhhhhhHH
Confidence 566778899999999999999999999998 999999999999999998653
No 6
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.7e-43 Score=316.68 Aligned_cols=282 Identities=19% Similarity=0.191 Sum_probs=246.2
Q ss_pred ccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccC-CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhh
Q 040751 61 KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNA-KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV 139 (405)
Q Consensus 61 ~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 139 (405)
.+|.|+||.| +..|+.+++++|++. +.+++..+. .|+||||+|+..|+.++|++|+++|++++
T Consensus 23 ~~~~t~L~~A--v~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~---------- 86 (337)
T 4g8k_A 23 VEDNHLLIKA--VQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV---------- 86 (337)
T ss_dssp HHHHHHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred CCCChHHHHH--HHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh----------
Confidence 3488999999 999999999999883 677887765 59999999999999999999999999864
Q ss_pred hHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc---
Q 040751 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE--- 216 (405)
Q Consensus 140 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~--- 216 (405)
..+..+.++++.++..+...++..+++.+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 87 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~ 157 (337)
T 4g8k_A 87 --------LRKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 157 (337)
T ss_dssp --------CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCC
T ss_pred --------hhccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhcc
Confidence 788899999999999999999999999999998 78999999999999999999999999999988754
Q ss_pred -------CCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcc
Q 040751 217 -------GPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ 289 (405)
Q Consensus 217 -------~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~ 289 (405)
+..|.||||+|+..|+. +++++|+...+.+++.++..|.|+++.++..+...- ...++++|+++|.
T Consensus 158 ~~~~~~~~~~g~T~L~~A~~~g~~--~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~-----~~~i~~lLl~~ga 230 (337)
T 4g8k_A 158 KEDQERLRKGGATALMDAAEKGHV--EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-----VEAITHLLLDHGA 230 (337)
T ss_dssp C-----CTTCSCCHHHHHHHHTCH--HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT-----HHHHHHHHHHTTC
T ss_pred ccccccccCCCCcHHHHHHHCCCH--HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc-----HHHHHHHHHHCCC
Confidence 34588999999999999 999999987666689999999999999887653211 1247899999998
Q ss_pred cccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcH
Q 040751 290 SASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNE 369 (405)
Q Consensus 290 ~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~ 369 (405)
++ +..+ ..|.||||+|+..++.+++++|++.+... ++.+|..|+||||+|++.|+.+
T Consensus 231 d~-n~~d-~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---------------------vn~~d~~G~TpL~~A~~~g~~~ 287 (337)
T 4g8k_A 231 DV-NVRG-ERGKTPLILAVEKKHLGLVQRLLEQEHIE---------------------INDTDSDGKTALLLAVELKLKK 287 (337)
T ss_dssp CT-TCCC-GGGCCHHHHHHHTTCHHHHHHHHTSTTCC---------------------TTCBCTTSCBHHHHHHHTTCHH
T ss_pred CC-CCcC-CCCCCHHHHHHHhhhhHHHHHHHHhcCCc---------------------ccCcCCCCCCHHHHHHHcCCHH
Confidence 87 4444 48999999999999999999999864332 6777888999999999999999
Q ss_pred HHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751 370 FYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD 403 (405)
Q Consensus 370 ~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~ 403 (405)
+|++||++ |+|+|. ++||++|++.+..+
T Consensus 288 iv~~Ll~~-GAd~n~-----~~~L~~A~~~~~~~ 315 (337)
T 4g8k_A 288 IAELLCKR-GASTDC-----GDLVMTARRNYDHS 315 (337)
T ss_dssp HHHHHHTT-SCSSTT-----CCHHHHHHHTTCHH
T ss_pred HHHHHHHC-CCCCCC-----CCHHHHHHHcCCHH
Confidence 99999998 999985 46999999987654
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-42 Score=303.13 Aligned_cols=262 Identities=21% Similarity=0.218 Sum_probs=235.3
Q ss_pred CHHHHHHhhcCCCchhhhhHHHHHHHhhh-hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751 31 DPKFFKAAADGNVEPFKDMAREKIESLLT-AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA 109 (405)
Q Consensus 31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A 109 (405)
.++|+.|++.|++++|++|++.|.+.+.. +..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSREDIVELLLR----HGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHH--HHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHH
Confidence 46799999999999999999999887755 77799999999 99999999999987 4677888999999999999
Q ss_pred HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc------
Q 040751 110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA------ 183 (405)
Q Consensus 110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~------ 183 (405)
+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++...
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~ 141 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVN------------------ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTT------------------CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHH
T ss_pred HHcCCHHHHHHHHHcCCCCC------------------ccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHH
Confidence 99999999999999998854 788999999999999999999999999999987321
Q ss_pred ---CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHhcCC----ccHHHHHHHHHhhhhhhhhcccC
Q 040751 184 ---NNDGKTPLYMAAESRSSDMVLALLEN-STSVSHEGPNGKTALHAAAMKFD----LVDTALRKLLEKKENLIKETDQY 255 (405)
Q Consensus 184 ---~~~g~t~L~~a~~~~~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~a~~~~~----~~~~~v~~Ll~~~~~~~~~~~~~ 255 (405)
+..|.||||+|+..|+.+++++|+++ |++++..+..|.||||.|+..+. . +++++|++.+.+ ++.++..
T Consensus 142 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~--~i~~~Ll~~g~~-~~~~~~~ 218 (285)
T 1wdy_A 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE--AITHLLLDHGAD-VNVRGER 218 (285)
T ss_dssp HHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHH--HHHHHHHHTTCC-SSCCCTT
T ss_pred HhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHH--HHHHHHHHcCCC-CCCcCCC
Confidence 67899999999999999999999987 99999999999999999999988 6 899999988766 7888999
Q ss_pred CCCHHHHHHHcChhhhhhhccccchhHHHHh-hcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 040751 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLE-TDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD 331 (405)
Q Consensus 256 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~-~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 331 (405)
|.||||+|+..| +.+++++|++ .+.++ +..+ ..|.||||+|+..++.+++++|+++|+++ +.+|
T Consensus 219 g~t~L~~A~~~~---------~~~~v~~Ll~~~g~~~-~~~~-~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~-~~~d 283 (285)
T 1wdy_A 219 GKTPLILAVEKK---------HLGLVQRLLEQEHIEI-NDTD-SDGKTALLLAVELKLKKIAELLCKRGAST-DCGD 283 (285)
T ss_dssp SCCHHHHHHHTT---------CHHHHHHHHHSSSCCT-TCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSSCS-CCSS
T ss_pred CCcHHHHHHHcC---------CHHHHHHHHhccCCCc-cccC-CCCCcHHHHHHHcCcHHHHHHHHHcCCCC-Cccc
Confidence 999999999998 5579999998 66665 4433 48999999999999999999999999987 4443
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-43 Score=322.64 Aligned_cols=309 Identities=19% Similarity=0.210 Sum_probs=215.2
Q ss_pred hcCCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751 28 SQMDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH 107 (405)
Q Consensus 28 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 107 (405)
.....+|+.|+..|+.+.++.+++...... .-.+++.-+ ...|+.+++++++. ...+..|.||||
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~g~~~~~~~~~~---------~~~~~~g~t~L~ 99 (373)
T 2fo1_E 35 TSSQHSLLEASYDGYIKRQRNELQHYSLYP----NPQGYGNGN--DFLGDFNHTNLQIP---------TEPEPESPIKLH 99 (373)
T ss_dssp --------------------------------------------------------------------------CCCHHH
T ss_pred cccccccccccCCccccchhhhhhhhcccc----CccccCCCC--Cccccccccccccc---------cCCCCCCccHHH
Confidence 445667999999999999999998665331 123455556 77788888877644 246888999999
Q ss_pred HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhcc-CCCchHhHHHHhCCCHHHHHHHH--------hcCCC
Q 040751 108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN-NEKNTALHEAVCHKNVDVVKILT--------KEDPD 178 (405)
Q Consensus 108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll--------~~~~~ 178 (405)
+|+..+ .+++++|+... ++..+ ..|.||||+|+..|+.+++++|+ +.|++
T Consensus 100 ~Aa~~~-~~~~~~L~~~~--------------------~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~ 158 (373)
T 2fo1_E 100 TEAAGS-YAITEPITRES--------------------VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158 (373)
T ss_dssp HHHHSS-SCCCSCCSTTT--------------------TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC
T ss_pred HHhcCC-chHHHHhcccc--------------------ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 999955 47888876532 34666 78999999999999998877776 78999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh--hhhhhcccCC
Q 040751 179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE--NLIKETDQYG 256 (405)
Q Consensus 179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~--~~~~~~~~~~ 256 (405)
++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++. +++++|+..+. ..++..+..|
T Consensus 159 vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~~~~~~~~~~~d~~g 235 (373)
T 2fo1_E 159 VN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDF--GMMVYMLNSTKLKGDIEELDRNG 235 (373)
T ss_dssp TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCH--HHHHHHTTSHHHHHTTSCCCTTS
T ss_pred Cc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCH--HHHHHHHhcCccccChhhcCCCC
Confidence 98 7899999999999999999999999999999999999999999999999999 99999998763 4478889999
Q ss_pred CCHHHHHHHcChhhhhhhccccchhHHHHhhccccccc------ccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccc
Q 040751 257 WTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNI------ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELV 330 (405)
Q Consensus 257 ~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~------~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~ 330 (405)
.||||+|+..+... +.+++++|++.+.++... ..+..|.||||+|+..|+.+++++|+++++..
T Consensus 236 ~t~L~~A~~~~~~~------~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---- 305 (373)
T 2fo1_E 236 MTALMIVAHNEGRD------QVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---- 305 (373)
T ss_dssp CCHHHHHHHSCSTT------HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC----
T ss_pred CCHHHHHHHhCCcc------hHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC----
Confidence 99999999886211 346899999999887431 12348999999999999999999999887433
Q ss_pred cCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccC
Q 040751 331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILD 403 (405)
Q Consensus 331 ~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~ 403 (405)
++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|+|||++|+..++.+
T Consensus 306 -----------------~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~g~t~l~~A~~~g~~~ 360 (373)
T 2fo1_E 306 -----------------KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ-GASVEAVDATDHTARQLAQANNHHN 360 (373)
T ss_dssp -----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred -----------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccCCCCCCCCHHHHHHHcCCHH
Confidence 566777888999999999999999999997 9999999999999999999888754
No 9
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-41 Score=298.28 Aligned_cols=262 Identities=20% Similarity=0.230 Sum_probs=197.7
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHh-------CCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhH
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEK-------CPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEE 134 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 134 (405)
.|.|+||+| +..|+.+.+..++..... -...+...+..|+||||+|+..|+.++|++|+++|++++
T Consensus 14 ~~~~~lH~A--a~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~----- 86 (285)
T 3d9h_A 14 LVPRGSHMA--SMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN----- 86 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-----
T ss_pred HHHHHHHHH--hhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-----
Confidence 467777777 666665544443321100 122355678889999999999999999999999998854
Q ss_pred HhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 040751 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214 (405)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~ 214 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 87 -------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 152 (285)
T 3d9h_A 87 -------------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ 152 (285)
T ss_dssp -------------EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred -------------CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC
Confidence 788899999999999999999999999999988 788899999999999999999999999999988
Q ss_pred ccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccc
Q 040751 215 HEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNI 294 (405)
Q Consensus 215 ~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~ 294 (405)
..+ .|.||||+|+..++. +++++|++.+.+ ++.++..|.||||+|+..| +.+++++|++.+.++.
T Consensus 153 ~~~-~g~t~L~~A~~~g~~--~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~~-- 217 (285)
T 3d9h_A 153 PES-DLASPIHEAARRGHV--ECVNSLIAYGGN-IDHKISHLGTPLYLACENQ---------QRACVKKLLESGADVN-- 217 (285)
T ss_dssp CSC-TTSCHHHHHHHHTCH--HHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTT---------CHHHHHHHHHTTCCTT--
T ss_pred CCC-CCCCHHHHHHHcCCH--HHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcC---------cHHHHHHHHHCCCCCC--
Confidence 654 599999999999999 999999988766 7788889999999999887 5578899999988774
Q ss_pred ccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHH
Q 040751 295 ADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVM 374 (405)
Q Consensus 295 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L 374 (405)
.+..|.||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+ ++.+++++|
T Consensus 218 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----------------------~~~~d~~g~t~l~~A~--~~~~~~~~L 272 (285)
T 3d9h_A 218 -QGKGQDSPLHAVVRTASEELACLLMDFGAD----------------------TQAKNAEGKRPVELVP--PESPLAQLF 272 (285)
T ss_dssp -CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC----------------------TTCCCTTSCCGGGGSC--TTSHHHHHH
T ss_pred -CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------------------CCCcCCCCCCHHHHhc--CccHHHHHH
Confidence 245889999999999999999999999887 4556667778888877 457899999
Q ss_pred Hhcccccccc
Q 040751 375 IRNTQVNYDA 384 (405)
Q Consensus 375 l~~~g~d~~~ 384 (405)
+++.|+++..
T Consensus 273 l~~~~a~l~~ 282 (285)
T 3d9h_A 273 LEREGASLPK 282 (285)
T ss_dssp HHHC------
T ss_pred HHhhccCCCC
Confidence 9987887654
No 10
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.6e-42 Score=310.01 Aligned_cols=305 Identities=20% Similarity=0.198 Sum_probs=244.7
Q ss_pred cCCHHHHHHhhcCCCchhhhhHHH-HHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751 29 QMDPKFFKAAADGNVEPFKDMARE-KIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH 107 (405)
Q Consensus 29 ~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 107 (405)
.-.++|+.|++.|+.+.|+.++.. +.+.+..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 96 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLH 96 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCcHHH
Confidence 345789999999999999999975 677777888899999999 99999999999988 47788899999999999
Q ss_pred HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCC
Q 040751 108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG 187 (405)
Q Consensus 108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 187 (405)
+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus 97 ~A~~~g~~~iv~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g 157 (351)
T 3utm_A 97 NACSYGHYEVTELLLKHGACVN------------------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHG 157 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred HHHHCCCHHHHHHHHHCCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCC
Confidence 9999999999999999998854 788899999999999999999999999999988 778899
Q ss_pred CcHHHHH---------------------HHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCc-cHHHHHHHHHhh
Q 040751 188 KTPLYMA---------------------AESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDL-VDTALRKLLEKK 245 (405)
Q Consensus 188 ~t~L~~a---------------------~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~-~~~~v~~Ll~~~ 245 (405)
.||+++| +..+..+.++.++..+......+..+.||||+|+..++. ..+++++|+..+
T Consensus 158 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g 237 (351)
T 3utm_A 158 KSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237 (351)
T ss_dssp CCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTT
T ss_pred CcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcC
Confidence 9987765 456677777777777766666778899999999998542 128888888887
Q ss_pred hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCc
Q 040751 246 ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPE 325 (405)
Q Consensus 246 ~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~ 325 (405)
.+ ++.++..|.||||+|+..| +.+++++|++++.++ +..+ ..|+||||+|+..|+.+++++|+++|++
T Consensus 238 ~~-~~~~~~~g~t~L~~A~~~g---------~~~~v~~Ll~~ga~~-n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~gad 305 (351)
T 3utm_A 238 AN-VNEKNKDFMTPLHVAAERA---------HNDVMEVLHKHGAKM-NALD-SLGQTALHRAALAGHLQTCRLLLSYGSD 305 (351)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTT---------CHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CC-cCCcCCCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 66 7889999999999999998 557999999999887 4434 4899999999999999999999999987
Q ss_pred ccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccc
Q 040751 326 CYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEH 400 (405)
Q Consensus 326 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~ 400 (405)
+ +.+|..|.||+++| +.+++++|.+. + ......+.+++..|++.|
T Consensus 306 ~----------------------~~~~~~g~tal~~a----~~~~~~~l~~~-~---~~~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 306 P----------------------SIISLQGFTAAQMG----NEAVQQILSES-T---PMRTSDVDYRLLEASKAG 350 (351)
T ss_dssp T----------------------TCCCTTSCCHHHHS----CHHHHHHHHHC-----------------------
T ss_pred C----------------------CCcCCCCCChhhhh----hHHHHHHHHhc-c---ccccCcceeehhhhhccC
Confidence 4 45566677777776 45777777765 2 234556778888887765
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=5.1e-42 Score=312.02 Aligned_cols=279 Identities=21% Similarity=0.211 Sum_probs=220.7
Q ss_pred HHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc-CCCChHHHHHHH
Q 040751 33 KFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN-AKGDTPLHVAAK 111 (405)
Q Consensus 33 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~ 111 (405)
++..+...|+++.++.++... .+..|.||||+| +..+ .+++++|.. ..++..+ ..|+||||+|+.
T Consensus 69 ~~~~~~~~g~~~~~~~~~~~~-----~~~~g~t~L~~A--a~~~-~~~~~~L~~------~~~n~~d~~~g~t~Lh~Aa~ 134 (373)
T 2fo1_E 69 YGNGNDFLGDFNHTNLQIPTE-----PEPESPIKLHTE--AAGS-YAITEPITR------ESVNIIDPRHNRTVLHWIAS 134 (373)
T ss_dssp ------------------------------CCCHHHHH--HHSS-SCCCSCCST------TTTTTCCCSSCCCHHHHHHC
T ss_pred cCCCCCccccccccccccccC-----CCCCCccHHHHH--hcCC-chHHHHhcc------ccccccCCcCCCCHHHHHHH
Confidence 356677779999998876653 355699999999 7754 577777633 3567777 789999999999
Q ss_pred hCcHHHHHHHH--------HccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751 112 FGHSGIVTFLV--------ERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA 183 (405)
Q Consensus 112 ~g~~~~v~~Ll--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 183 (405)
.|+.+++++|+ ++|+++ +..|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus 135 ~g~~~~v~~Ll~~~~~~ll~~ga~v------------------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~ 195 (373)
T 2fo1_E 135 NSSAEKSEDLIVHEAKECIAAGADV------------------NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IY 195 (373)
T ss_dssp TTCCSCCTTHHHHHHHHHHHTCCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCC------------------cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-cc
Confidence 99988888776 778874 4889999999999999999999999999999998 78
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCcHHHHHHhcC---CccHHHHHHHHHhhhhhhhh------
Q 040751 184 NNDGKTPLYMAAESRSSDMVLALLENS---TSVSHEGPNGKTALHAAAMKF---DLVDTALRKLLEKKENLIKE------ 251 (405)
Q Consensus 184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g---~~~~~~~~~~~t~L~~a~~~~---~~~~~~v~~Ll~~~~~~~~~------ 251 (405)
+..|.||||+|+..|+.+++++|+++| ++++..+..|.||||+|+..+ .. +++++|++.+.+ ++.
T Consensus 196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~--~~v~~Ll~~g~~-~~~~~~~~~ 272 (373)
T 2fo1_E 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV--ASAKLLVEKGAK-VDYDGAARK 272 (373)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH--HHHHHHHHHTCC-SSCCSGGGT
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchH--HHHHHHHHCCCC-ccccccccc
Confidence 899999999999999999999999998 899999999999999999987 67 999999998765 332
Q ss_pred --cccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhc-ccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccc
Q 040751 252 --TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETD-QSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYE 328 (405)
Q Consensus 252 --~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~-~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~ 328 (405)
.+..|.||||+|+..| +.+++++|++.+ .++ +..+ ..|.||||+|+..|+.+++++|+++|++
T Consensus 273 ~~~d~~g~t~Lh~A~~~g---------~~~~v~~Ll~~~~~~~-n~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gad--- 338 (373)
T 2fo1_E 273 DSEKYKGRTALHYAAQVS---------NMPIVKYLVGEKGSNK-DKQD-EDGKTPIMLAAQEGRIEVVMYLIQQGAS--- 338 (373)
T ss_dssp SSSSCCCCCTHHHHHSSC---------CHHHHHHHHHHSCCCT-TCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCC---
T ss_pred CcccccCCCHHHHHHHhC---------CHHHHHHHHHhcCCCc-cCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC---
Confidence 5678999999999998 557999999887 444 4444 4899999999999999999999999987
Q ss_pred cccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccc
Q 040751 329 LVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVN 381 (405)
Q Consensus 329 ~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d 381 (405)
++.+|..|.||||+|+..|+.+++++|+++ |++
T Consensus 339 -------------------~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~-~a~ 371 (373)
T 2fo1_E 339 -------------------VEAVDATDHTARQLAQANNHHNIVDIFDRC-RPE 371 (373)
T ss_dssp -------------------SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT-C--
T ss_pred -------------------ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc-Ccc
Confidence 456677889999999999999999999997 765
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.1e-41 Score=290.05 Aligned_cols=241 Identities=21% Similarity=0.255 Sum_probs=211.5
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180 (405)
Q Consensus 101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~ 180 (405)
+|+||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 63 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN------------------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS------------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 58999999999999999999999998854 788999999999999999999999999999998
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI 260 (405)
Q Consensus 181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l 260 (405)
..+..|.||||+|+..|+.+++++|+++|++++.. ..|.||||.|+..++. +++++|++.+.+ ++.++..|.|||
T Consensus 64 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~g~t~L 138 (261)
T 2xai_A 64 -GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHV--ECVNSLIAYGGN-IDHKISHLGTPL 138 (261)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCBTTTBCHH
T ss_pred -CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCcH--HHHHHHHHcCCC-CCcCCCCCCCHH
Confidence 78899999999999999999999999999999864 4699999999999999 999999998866 788899999999
Q ss_pred HHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHH
Q 040751 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHY 340 (405)
Q Consensus 261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~ 340 (405)
|+|+..| +.+++++|++.+.+++. +..|.||||+|+..++.+++++|+++|++.
T Consensus 139 ~~A~~~~---------~~~~v~~Ll~~g~~~~~---~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-------------- 192 (261)
T 2xai_A 139 YLACENQ---------QRACVKKLLESGADVNQ---GKGQDSPLHAVARTASEELACLLMDFGADT-------------- 192 (261)
T ss_dssp HHHHHTT---------CHHHHHHHHHHTCCTTC---CBTTBCHHHHHHHHTCHHHHHHHHHTTCCT--------------
T ss_pred HHHHHhC---------CHHHHHHHHHcCCCCCC---CCCCCChHHHHHHcCCHHHHHHHHHcCCCC--------------
Confidence 9999998 55799999999988742 458999999999999999999999999874
Q ss_pred HHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccc-------cccccccCCCCchhhhhhccc
Q 040751 341 AVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQ-------VNYDAVNKQNVSVEHILDYEH 400 (405)
Q Consensus 341 a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g-------~d~~~~~~~g~t~l~~a~~~~ 400 (405)
+.+|..|.||||+|+.. .+++++|++..+ ++++.+|..|+||+|+|.+..
T Consensus 193 --------~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 193 --------QAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp --------TCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSS
T ss_pred --------CCcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccC
Confidence 45566677777777743 458889988722 456789999999999998753
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-41 Score=296.37 Aligned_cols=256 Identities=19% Similarity=0.178 Sum_probs=186.1
Q ss_pred cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751 95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK 174 (405)
Q Consensus 95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 174 (405)
++..|..|.||||+|+..|+.++|++|+++|++.. .++..+..|.||||+|+..|+.+++++|++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 66 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---------------YLDLQNDLGQTALHLAAILGEASTVEKLYA 66 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG---------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc---------------cccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 45678889999999999999999999999887631 144678889999999999999999999999
Q ss_pred cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------------CCCCCcHHHHHHhcCCccHHHHHHH
Q 040751 175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE-------------GPNGKTALHAAAMKFDLVDTALRKL 241 (405)
Q Consensus 175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~-------------~~~~~t~L~~a~~~~~~~~~~v~~L 241 (405)
+|++++ ..+..|.||||+|+..|+.+++++|+++|++.... ...+.++++.++..... ..+..+
T Consensus 67 ~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 143 (282)
T 1oy3_D 67 AGAGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE--NEEEPR 143 (282)
T ss_dssp TTCCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------
T ss_pred cCCCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc--hhhhhh
Confidence 999987 67888999999999999999999999988764322 22345666666655544 334444
Q ss_pred HHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHh
Q 040751 242 LEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIIS 321 (405)
Q Consensus 242 l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 321 (405)
+......++.++..|.||||+|+..| +.+++++|++.+.++ +......|.||||+|+..|+.+++++|++
T Consensus 144 ~~~~~~~~~~~~~~g~t~L~~A~~~g---------~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 213 (282)
T 1oy3_D 144 DEDWRLQLEAENYDGHTPLHVAVIHK---------DAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQAASVLELLLK 213 (282)
T ss_dssp CCCGGGGTTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhcCCCcCCCCcCHHHHHHHcC---------CHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 44444457888999999999999998 557999999999887 44443469999999999999999999999
Q ss_pred cCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccc
Q 040751 322 KNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHI 401 (405)
Q Consensus 322 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~ 401 (405)
+|++ ++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||+++|.....
T Consensus 214 ~gad----------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 214 AGAD----------------------PTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TTCC----------------------TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC---------------
T ss_pred cCCC----------------------CcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCCcccccccccCCccc
Confidence 9887 456677899999999999999999999998 99999999999999999987654
No 14
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=292.06 Aligned_cols=254 Identities=18% Similarity=0.137 Sum_probs=194.3
Q ss_pred cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751 99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD 178 (405)
Q Consensus 99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 178 (405)
...|.|+||+|+..|+.+.+..++..+........... ..++..+..|.||||+|+..|+.+++++|++.|++
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~ 84 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLS-------NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA 84 (285)
T ss_dssp ------------------------------CCSEECCC-------CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhh-------CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 45689999999999998777777665432110000000 01346788999999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCC
Q 040751 179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT 258 (405)
Q Consensus 179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 258 (405)
++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.. ++. +..|.|
T Consensus 85 ~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~-~~~-~~~g~t 159 (285)
T 3d9h_A 85 VN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW--DCVNLLLQHGAS-VQP-ESDLAS 159 (285)
T ss_dssp SC-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-SSC-SCTTSC
T ss_pred CC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHH--HHHHHHHHCCCC-CCC-CCCCCC
Confidence 88 7889999999999999999999999999999999999999999999999999 999999998765 333 445999
Q ss_pred HHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHH
Q 040751 259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL 338 (405)
Q Consensus 259 ~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l 338 (405)
|||+|+..| +.+++++|++.+.++ +..+ ..|.||||+|+..++.+++++|++.|+++
T Consensus 160 ~L~~A~~~g---------~~~~v~~Ll~~g~~~-~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~------------ 216 (285)
T 3d9h_A 160 PIHEAARRG---------HVECVNSLIAYGGNI-DHKI-SHLGTPLYLACENQQRACVKKLLESGADV------------ 216 (285)
T ss_dssp HHHHHHHHT---------CHHHHHHHHHTTCCT-TCCB-TTTBCHHHHHHHTTCHHHHHHHHHTTCCT------------
T ss_pred HHHHHHHcC---------CHHHHHHHHHCCCCC-CCcC-CCCCCHHHHHHHcCcHHHHHHHHHCCCCC------------
Confidence 999999998 557999999999876 3333 48999999999999999999999998875
Q ss_pred HHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcc
Q 040751 339 HYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYE 399 (405)
Q Consensus 339 ~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~ 399 (405)
+ .+..|.||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|...
T Consensus 217 ----------~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 217 ----------N-QGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp ----------T-CCBTTBCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCGGGGSCTT
T ss_pred ----------C-CCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHhcCc
Confidence 2 256788999999999999999999997 999999999999999999854
No 15
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.2e-41 Score=307.62 Aligned_cols=281 Identities=15% Similarity=0.133 Sum_probs=236.7
Q ss_pred HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchh
Q 040751 54 IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENE 133 (405)
Q Consensus 54 ~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 133 (405)
.+.+..+..|.||||+| +..|+.+++++|++ .+.+++..+..|.||||+|+..|+.++|++|+++|++.
T Consensus 11 ~~~~~~d~~g~t~L~~A--a~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----- 79 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVA--ARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----- 79 (364)
T ss_dssp -----CCHHHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----
T ss_pred CCccccCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----
Confidence 44556677899999999 99999999999987 46778899999999999999999999999999999864
Q ss_pred HHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc----CCCCccc-----------------cCCCCCcHHH
Q 040751 134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE----DPDYRYS-----------------ANNDGKTPLY 192 (405)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----~~~~~~~-----------------~~~~g~t~L~ 192 (405)
.+..|.||||+|+..|+.+++++|++. |.+++ . .+..|.||||
T Consensus 80 ---------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 143 (364)
T 3ljn_A 80 ---------------SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPE-SLLNECDEREVNEIGSHVKHCKGQTALH 143 (364)
T ss_dssp ---------------CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHH-HHHTCCCCCCEEEETTEEEEESCCCHHH
T ss_pred ---------------cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHH-HHHhhcchHhhhhhccccCCCCCCCHHH
Confidence 345799999999999999999999998 77765 3 6778999999
Q ss_pred HHHHcC--CHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhh----hhhcccCCCCHHHHHHHc
Q 040751 193 MAAESR--SSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL----IKETDQYGWTPIHYAAYH 266 (405)
Q Consensus 193 ~a~~~~--~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~----~~~~~~~~~t~l~~a~~~ 266 (405)
+|+..| +.+++++|+++|++++..+..|.||||+|+..++. +++++|++.+.+. ++..+..|.||||+|+..
T Consensus 144 ~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~ 221 (364)
T 3ljn_A 144 WCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR--EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI 221 (364)
T ss_dssp HHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT
T ss_pred HHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCH--HHHHHHHhcccccccccccccCCCCCcHHHHHHHc
Confidence 999999 99999999999999999999999999999999999 9999999977552 678889999999999999
Q ss_pred ChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccc--cccCCCChHHHHHHHh
Q 040751 267 GMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYE--LVDNRGWNFLHYAVVT 344 (405)
Q Consensus 267 ~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~~a~~~ 344 (405)
| +.+++++|+++|+++ +..+ ..|.||||+|+..|+.+++++|+++|++... .....+.
T Consensus 222 g---------~~~~v~~Ll~~gad~-~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~--------- 281 (364)
T 3ljn_A 222 N---------WEDVAMRFVEMGIDV-NMED-NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGT--------- 281 (364)
T ss_dssp T---------CHHHHHHHHTTTCCT-TCCC-TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSS---------
T ss_pred C---------CHHHHHHHHHcCCCC-CCCC-CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcc---------
Confidence 8 558999999999887 4444 4899999999999999999999999887511 1111222
Q ss_pred ccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccC
Q 040751 345 RSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK 387 (405)
Q Consensus 345 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~ 387 (405)
....+..++||+++|+..|+.+.+..||.. +++...++.
T Consensus 282 ---~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~-~~~~~~~~~ 320 (364)
T 3ljn_A 282 ---TVLPDRVVWLDFVPAAADPSKQEVLQLLQE-KLDEVVRSL 320 (364)
T ss_dssp ---SBCGGGCCCCTTSCSSCCHHHHHHHHHHHH-HHHHHHTC-
T ss_pred ---cccccccccccchhhhhccCHHHHHHHHHH-HHHHHhhcc
Confidence 223467899999999999999989888887 666544433
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.9e-41 Score=303.90 Aligned_cols=250 Identities=20% Similarity=0.176 Sum_probs=220.2
Q ss_pred ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751 94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT 173 (405)
Q Consensus 94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 173 (405)
..+..|..|.||||+|+..|+.++|++|+++|++++ ..+..|.||||+|+..|+.+++++|+
T Consensus 12 ~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------------------~~d~~g~t~L~~A~~~g~~~~v~~Ll 73 (364)
T 3ljn_A 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT------------------IQNRFGCTALHLACKFGCVDTAKYLA 73 (364)
T ss_dssp ----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHHCCHHHHHHHH
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc------------------ccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 455678889999999999999999999999998854 88999999999999999999999999
Q ss_pred hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc----CCCCcc-----------------cCCCCCcHHHHHHhcC-
Q 040751 174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLEN----STSVSH-----------------EGPNGKTALHAAAMKF- 231 (405)
Q Consensus 174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~----g~~~~~-----------------~~~~~~t~L~~a~~~~- 231 (405)
+.|++++ +..|.||||+|+..|+.+++++|+++ |++++. .+..|.||||+|+..|
T Consensus 74 ~~g~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~ 150 (364)
T 3ljn_A 74 SVGEVHS---LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGP 150 (364)
T ss_dssp HHCCCCC---CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCG
T ss_pred HCCCCcc---ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCC
Confidence 9999765 46899999999999999999999999 888777 8889999999999999
Q ss_pred -CccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccc-----ccccccccCCccHHH
Q 040751 232 -DLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQS-----ASNIADKDRKMTALH 305 (405)
Q Consensus 232 -~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~-----~~~~~~~~~g~t~l~ 305 (405)
+. +++++|++.+.+ ++.++..|.||||+|+..| +.+++++|++.+.+ + +..+ ..|.||||
T Consensus 151 ~~~--~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g---------~~~~v~~Ll~~g~~~~~~~~-~~~~-~~g~t~L~ 216 (364)
T 3ljn_A 151 EYL--EMIKILVQLGAS-PTAKDKADETPLMRAMEFR---------NREALDLMMDTVPSKSSLRL-DYAN-KQGNSHLH 216 (364)
T ss_dssp GGH--HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHCSCSSSCCT-TCCC-TTCCCTTH
T ss_pred chH--HHHHHHHHcCCC-CcccCCCCCCHHHHHHHcC---------CHHHHHHHHhcccccccccc-cccC-CCCCcHHH
Confidence 88 999999999766 7889999999999999998 55799999999887 4 3333 48999999
Q ss_pred HHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccccc-
Q 040751 306 LAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDA- 384 (405)
Q Consensus 306 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~- 384 (405)
+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++ |++++.
T Consensus 217 ~A~~~g~~~~v~~Ll~~gad----------------------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~ 273 (364)
T 3ljn_A 217 WAILINWEDVAMRFVEMGID----------------------VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQ 273 (364)
T ss_dssp HHHTTTCHHHHHHHHTTTCC----------------------TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCC----------------------CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhh
Confidence 99999999999999999987 456677899999999999999999999998 877654
Q ss_pred -----------ccCCCCchhhhhhcccc
Q 040751 385 -----------VNKQNVSVEHILDYEHI 401 (405)
Q Consensus 385 -----------~~~~g~t~l~~a~~~~~ 401 (405)
.+..|++|+++|...+.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~aa~~~~ 301 (364)
T 3ljn_A 274 ACPYHNGTTVLPDRVVWLDFVPAAADPS 301 (364)
T ss_dssp TCTTBSSSSBCGGGCCCCTTSCSSCCHH
T ss_pred cCcccCcccccccccccccchhhhhccC
Confidence 56788899988887663
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.6e-40 Score=286.13 Aligned_cols=223 Identities=22% Similarity=0.249 Sum_probs=172.2
Q ss_pred hhhccCCCchHhHHHHhCC-------------CHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751 146 IKMTNNEKNTALHEAVCHK-------------NVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212 (405)
Q Consensus 146 ~~~~~~~g~t~L~~A~~~~-------------~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~ 212 (405)
++.+|..|.||||+|+..| +.+++++|++.|++++...+..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 5678999999999999977 899999999999999867789999999999999999999999999999
Q ss_pred CcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc
Q 040751 213 VSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS 292 (405)
Q Consensus 213 ~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~ 292 (405)
++..+..|.||||+|+..++. +++++|++.+...++..+..|.||||+|+..| +.+++++|++.+.++
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~- 150 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQ--GVFQILIRNRATDLDARMHDGTTPLILAARLA---------VEGMLEDLINSHADV- 150 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCH--HHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT---------CSSHHHHHHHTTCCT-
T ss_pred CCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCCCccccCCCCCcHHHHHHHcC---------hHHHHHHHHHcCCCC-
Confidence 999999999999999999999 99999999988668889999999999999988 668999999999877
Q ss_pred ccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHH
Q 040751 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYD 372 (405)
Q Consensus 293 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~ 372 (405)
+..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.++++
T Consensus 151 ~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------------------~~~~~~~g~tpL~~A~~~~~~~~v~ 207 (253)
T 1yyh_A 151 NAVD-DLGKSALHWAAAVNNVDAAVVLLKNGAN----------------------KDMQNNREETPLFLAAREGSYETAK 207 (253)
T ss_dssp TCBC-TTSCBHHHHHHHHTCHHHHHHHHHTTCC----------------------TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred CCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------CCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 3333 4899999999999999999999999887 4566778899999999999999999
Q ss_pred HHHhccccccccccCCCCchhhhhhcccccCC
Q 040751 373 VMIRNTQVNYDAVNKQNVSVEHILDYEHILDF 404 (405)
Q Consensus 373 ~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~~ 404 (405)
+|+++ |++++.+|..|+||+++|++.++.++
T Consensus 208 ~Ll~~-ga~~~~~d~~g~tpl~~A~~~g~~~i 238 (253)
T 1yyh_A 208 VLLDH-FANRDITDHMDRLPRDIAQERMHHDI 238 (253)
T ss_dssp HHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHHc-CCCccccccCCCCHHHHHHHcCCHHH
Confidence 99998 99999999999999999999988653
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4e-40 Score=284.90 Aligned_cols=258 Identities=16% Similarity=0.176 Sum_probs=222.8
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 141 (405)
+|+||||+| +..|+.+++++|++ .+..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------ 63 (261)
T 2xai_A 2 SDWSPMHEA--AIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN------------ 63 (261)
T ss_dssp --CCHHHHH--HHHTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred CCCCHHHHH--HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC------------
Confidence 589999999 99999999999987 467788999999999999999999999999999998854
Q ss_pred HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221 (405)
Q Consensus 142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 221 (405)
..+..|.||||+|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 64 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 135 (261)
T 2xai_A 64 ------GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG 135 (261)
T ss_dssp ------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTB
T ss_pred ------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCC
Confidence 788999999999999999999999999999987 355699999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCc
Q 040751 222 TALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKM 301 (405)
Q Consensus 222 t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~ 301 (405)
||||+|+..++. +++++|++.+.+ ++ .+..|.||||+|+..+ +.+++++|++.|+++ +..+ ..|.
T Consensus 136 t~L~~A~~~~~~--~~v~~Ll~~g~~-~~-~~~~g~t~Lh~A~~~~---------~~~~v~~Ll~~gad~-~~~d-~~g~ 200 (261)
T 2xai_A 136 TPLYLACENQQR--ACVKKLLESGAD-VN-QGKGQDSPLHAVARTA---------SEELACLLMDFGADT-QAKN-AEGK 200 (261)
T ss_dssp CHHHHHHHTTCH--HHHHHHHHHTCC-TT-CCBTTBCHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCC-TTSC
T ss_pred CHHHHHHHhCCH--HHHHHHHHcCCC-CC-CCCCCCChHHHHHHcC---------CHHHHHHHHHcCCCC-CCcC-CCCC
Confidence 999999999999 999999998776 45 3788999999999998 557999999999887 4444 4899
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHh
Q 040751 302 TALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIR 376 (405)
Q Consensus 302 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~ 376 (405)
||+|+|+..+ +++++|++++... +..+.+ .++.++..|.||+|.|.+...++.++.++.
T Consensus 201 tpl~~A~~~~--~~~~~ll~~~~~~---------~l~~~~-----~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 201 RPVELVPPES--PLAQLFLEREGPP---------SLMQLC-----RLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp CGGGGSCTTC--THHHHHHHC-CCC---------CHHHHH-----HHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred Chhhhccccc--cHHHHHHhccCCc---------cHHHHH-----HHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 9999999665 5899999886543 111111 256778889999999999988888887764
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.1e-40 Score=282.47 Aligned_cols=229 Identities=22% Similarity=0.292 Sum_probs=176.6
Q ss_pred cccccCCCChHHHHHHHhC-------------cHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH
Q 040751 95 LLQVNAKGDTPLHVAAKFG-------------HSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV 161 (405)
Q Consensus 95 ~~~~~~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 161 (405)
++.+|..|.||||+|+..| +.+++++|+++|++.. ...+..|.||||+|+
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-----------------~~~d~~g~t~L~~A~ 65 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-----------------NQTDRTGETALHLAA 65 (253)
T ss_dssp ------------------------------------------------------------------CCCTTSCCHHHHHH
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-----------------cccCCCCCcHHHHHH
Confidence 4455566666666666655 8999999999998752 345889999999999
Q ss_pred hCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCcccCCCCCcHHHHHHhcCCccHHHHHH
Q 040751 162 CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST-SVSHEGPNGKTALHAAAMKFDLVDTALRK 240 (405)
Q Consensus 162 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~-~~~~~~~~~~t~L~~a~~~~~~~~~~v~~ 240 (405)
..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+..++. +++++
T Consensus 66 ~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~ 142 (253)
T 1yyh_A 66 RYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVE--GMLED 142 (253)
T ss_dssp HTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCS--SHHHH
T ss_pred HcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChH--HHHHH
Confidence 9999999999999999998 788999999999999999999999999997 8999999999999999999999 99999
Q ss_pred HHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHH
Q 040751 241 LLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAII 320 (405)
Q Consensus 241 Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 320 (405)
|++.+.+ ++.++..|.||||+|+..| +.+++++|++.+.++ +..+ ..|.||||+|+..|+.+++++|+
T Consensus 143 Ll~~g~~-~~~~d~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-~~~~-~~g~tpL~~A~~~~~~~~v~~Ll 210 (253)
T 1yyh_A 143 LINSHAD-VNAVDDLGKSALHWAAAVN---------NVDAAVVLLKNGANK-DMQN-NREETPLFLAAREGSYETAKVLL 210 (253)
T ss_dssp HHHTTCC-TTCBCTTSCBHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHcCCC-CCCcCCCCCCHHHHHHHcC---------CHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHCCCHHHHHHHH
Confidence 9998766 7889999999999999998 557999999999887 3333 48999999999999999999999
Q ss_pred hcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751 321 SKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377 (405)
Q Consensus 321 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~ 377 (405)
++|++ ++.+|..|.|||++|++.|+.+++++|...
T Consensus 211 ~~ga~----------------------~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 211 DHFAN----------------------RDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp HTTCC----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred HcCCC----------------------ccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 99987 456677899999999999999999999976
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=7.2e-39 Score=273.98 Aligned_cols=222 Identities=22% Similarity=0.249 Sum_probs=197.9
Q ss_pred hhhccCCCchHhHHHHhCCCHHHHHHHHh----cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751 146 IKMTNNEKNTALHEAVCHKNVDVVKILTK----EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221 (405)
Q Consensus 146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 221 (405)
++.+|..|.||||+|+..|+.+++++|++ .+.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ 80 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-cccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence 35678999999999999999999999997 688887 7889999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCccHHHHHHHHHhhhh---hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccccccc
Q 040751 222 TALHAAAMKFDLVDTALRKLLEKKEN---LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKD 298 (405)
Q Consensus 222 t~L~~a~~~~~~~~~~v~~Ll~~~~~---~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~ 298 (405)
||||+|+..++. +++++|+..+.. .++..+..|.||||+|+..| +.+++++|++.+.+. +.....
T Consensus 81 t~l~~A~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~~~ 148 (241)
T 1k1a_A 81 TAAHLACEHRSP--TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE---------CQETVQLLLERGADI-DAVDIK 148 (241)
T ss_dssp CHHHHHHHTTCH--HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCCTT
T ss_pred CHHHHHHHcCCH--HHHHHHHHcCCCccccccccCcCCCcHHHHHHHcC---------CHHHHHHHHHcCCCc-cccccc
Confidence 999999999999 999999998762 46778889999999999988 557999999999887 333434
Q ss_pred CCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcc
Q 040751 299 RKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNT 378 (405)
Q Consensus 299 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~ 378 (405)
.|.||||+|+..++.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~- 205 (241)
T 1k1a_A 149 SGRSPLIHAVENNSLSMVQLLLQHGAN----------------------VNAQMYSGSSALHSASGRGLLPLVRTLVRS- 205 (241)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC----------------------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHT-
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhc-
Confidence 899999999999999999999999887 456677899999999999999999999997
Q ss_pred ccccccccCCCCchhhhhhcccccC
Q 040751 379 QVNYDAVNKQNVSVEHILDYEHILD 403 (405)
Q Consensus 379 g~d~~~~~~~g~t~l~~a~~~~~~~ 403 (405)
|++++.+|..|+||+++|...+..+
T Consensus 206 ga~~~~~~~~g~tpl~~A~~~~~~~ 230 (241)
T 1k1a_A 206 GADSSLKNCHNDTPLMVARSRRVID 230 (241)
T ss_dssp TCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHhcCcHH
Confidence 9999999999999999999988765
No 21
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.2e-39 Score=284.59 Aligned_cols=240 Identities=24% Similarity=0.282 Sum_probs=205.2
Q ss_pred cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751 99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD 178 (405)
Q Consensus 99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 178 (405)
+..|.||||.|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 98 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADI------------------NYANVDGLTALHQACIDDNVDMVKFLVENGAN 98 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCT------------------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 446789999999999999999999999885 47889999999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCC
Q 040751 179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT 258 (405)
Q Consensus 179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 258 (405)
++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+.. ++++.++...+..++.....+.+
T Consensus 99 ~~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~~~~ll~~~~~~~~~~~~~~~~ 175 (299)
T 1s70_B 99 IN-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAME--ELLQNEVNRQGVDIEAARKEEER 175 (299)
T ss_dssp TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHH--HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchH--HHHHHHHhhcCCCchhhhhhhhh
Confidence 98 7888999999999999999999999999999999999999999999999988 99999888765544433322222
Q ss_pred HHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHH
Q 040751 259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL 338 (405)
Q Consensus 259 ~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l 338 (405)
+++ ..+..++..+... ....+..|.||||+|+..|+.+++++|+++|++
T Consensus 176 ~~~-----------------~~~~~~l~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d------------- 224 (299)
T 1s70_B 176 IML-----------------RDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD------------- 224 (299)
T ss_dssp HHH-----------------HHHHHHHHHTCCC-CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-------------
T ss_pred HHH-----------------HHHHHHHhccCcc-hhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-------------
Confidence 222 1334445555444 223335899999999999999999999999876
Q ss_pred HHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccc
Q 040751 339 HYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEH 400 (405)
Q Consensus 339 ~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~ 400 (405)
++.+|..|.||||+|+..|+.+++++|+++ |+|++.+|..|+||+++|.+..
T Consensus 225 ---------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~~g~t~l~~A~~~~ 276 (299)
T 1s70_B 225 ---------VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNKVGQTAFDVADEDI 276 (299)
T ss_dssp ---------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTTTSCCSGG
T ss_pred ---------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHHH
Confidence 456677899999999999999999999998 9999999999999999998743
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=8.3e-39 Score=272.86 Aligned_cols=220 Identities=25% Similarity=0.376 Sum_probs=201.9
Q ss_pred hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALH 225 (405)
Q Consensus 146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~ 225 (405)
++.++..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 82 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLH 82 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHH
Confidence 45788899999999999999999999999999988 77889999999999999999999999999999999999999999
Q ss_pred HHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHH
Q 040751 226 AAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALH 305 (405)
Q Consensus 226 ~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~ 305 (405)
.|+..++. +++++|++.+...++..+..|.||||+|+..+ +.+++++|++.+.++ +... ..|.||||
T Consensus 83 ~A~~~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~ 149 (237)
T 3b7b_A 83 LAAKKGHY--EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYK---------HVDLVKLLLSKGSDI-NIRD-NEENICLH 149 (237)
T ss_dssp HHHHTTCH--HHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHTTCCT-TCCC-TTSCCHHH
T ss_pred HHHHcCCH--HHHHHHHhCCCCCcccCCCCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC-CccC-CCCCCHHH
Confidence 99999999 99999999886668888999999999999988 557999999998876 3333 48999999
Q ss_pred HHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccc
Q 040751 306 LAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAV 385 (405)
Q Consensus 306 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~ 385 (405)
+|+..|+.+++++|+++|++ ++.+|..|.||||+|++.|+.+++++|+++ |++++.+
T Consensus 150 ~A~~~~~~~~~~~Ll~~g~~----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~~ 206 (237)
T 3b7b_A 150 WAAFSGCVDIAEILLAAKCD----------------------LHAVNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLK 206 (237)
T ss_dssp HHHHHCCHHHHHHHHTTTCC----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCC
T ss_pred HHHHCCCHHHHHHHHHcCCC----------------------CCCcCCCCCCHHHHHHHhCCHhHHHHHHHc-CCCCCcc
Confidence 99999999999999999877 455677889999999999999999999998 9999999
Q ss_pred cCCCCchhhhhhccccc
Q 040751 386 NKQNVSVEHILDYEHIL 402 (405)
Q Consensus 386 ~~~g~t~l~~a~~~~~~ 402 (405)
|..|+||+++|+..+..
T Consensus 207 d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 207 NKEGETPLQCASLNSQV 223 (237)
T ss_dssp CTTSCCHHHHSCTTCHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999988754
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.3e-38 Score=269.14 Aligned_cols=228 Identities=23% Similarity=0.275 Sum_probs=196.9
Q ss_pred ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751 94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT 173 (405)
Q Consensus 94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 173 (405)
+++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+
T Consensus 3 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll 64 (237)
T 3b7b_A 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID------------------TCSEDQRTPLMEAAENNHLEAVKYLI 64 (237)
T ss_dssp CCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------------CCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred CcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC------------------ccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 456778899999999999999999999999998854 77888999999999999999999999
Q ss_pred hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhc
Q 040751 174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS-TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKET 252 (405)
Q Consensus 174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~ 252 (405)
++|++++ ..+..|.||||+|+..|+.+++++|+++| .+++..+..|.||||.|+..++. +++++|++.+.+ ++.+
T Consensus 65 ~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~-~~~~ 140 (237)
T 3b7b_A 65 KAGALVD-PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV--DLVKLLLSKGSD-INIR 140 (237)
T ss_dssp TTTCCCC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCC
T ss_pred hCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCC-CCcc
Confidence 9999987 67889999999999999999999999998 88899999999999999999999 999999998766 6788
Q ss_pred ccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccC
Q 040751 253 DQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDN 332 (405)
Q Consensus 253 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 332 (405)
+..|.||||+|+..| +.+++++|++.+.++ +..+ ..|.||||+|+..++.+++++|+++|++.
T Consensus 141 ~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~gad~------ 203 (237)
T 3b7b_A 141 DNEENICLHWAAFSG---------CVDIAEILLAAKCDL-HAVN-IHGDSPLHIAARENRYDCVVLFLSRDSDV------ 203 (237)
T ss_dssp CTTSCCHHHHHHHHC---------CHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHTTTCCT------
T ss_pred CCCCCCHHHHHHHCC---------CHHHHHHHHHcCCCC-CCcC-CCCCCHHHHHHHhCCHhHHHHHHHcCCCC------
Confidence 889999999999988 557899999998876 3333 48999999999999999999999999874
Q ss_pred CCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHh
Q 040751 333 RGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIR 376 (405)
Q Consensus 333 ~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~ 376 (405)
+.+|..|.||||+|+..|+...+..|++
T Consensus 204 ----------------~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 204 ----------------TLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp ----------------TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred ----------------CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778878777755555554
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.9e-39 Score=274.50 Aligned_cols=232 Identities=21% Similarity=0.262 Sum_probs=201.0
Q ss_pred hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751 58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES 137 (405)
Q Consensus 58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 137 (405)
..|.+|.||||+| +..|+.+++++|++.+...+..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 73 (241)
T 1k1a_A 4 RADEDGDTPLHIA--VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-------- 73 (241)
T ss_dssp ---CTTCCHHHHH--HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc--------
Confidence 5677899999999 999999999999988777888899999999999999999999999999999998854
Q ss_pred hhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC----CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751 138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP----DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213 (405)
Q Consensus 138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~ 213 (405)
..+..|.||||+|+..|+.+++++|++.+. +++ ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 74 ----------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 142 (241)
T 1k1a_A 74 ----------ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-ARNYDGLTALHVAVNTECQETVQLLLERGADI 142 (241)
T ss_dssp ----------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred ----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc-ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc
Confidence 778899999999999999999999999987 555 67889999999999999999999999999999
Q ss_pred cccC-CCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc
Q 040751 214 SHEG-PNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS 292 (405)
Q Consensus 214 ~~~~-~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~ 292 (405)
+..+ ..|.||||+|+..++. +++++|++.+.+ ++.++..|.||||+|+..| +.+++++|+++|.++
T Consensus 143 ~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~- 209 (241)
T 1k1a_A 143 DAVDIKSGRSPLIHAVENNSL--SMVQLLLQHGAN-VNAQMYSGSSALHSASGRG---------LLPLVRTLVRSGADS- 209 (241)
T ss_dssp TCCCTTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHT---------CHHHHHHHHHTTCCT-
T ss_pred ccccccCCCcHHHHHHHcCCH--HHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcC---------CHHHHHHHHhcCCCC-
Confidence 9888 7899999999999999 999999998766 7888899999999999988 557899999998876
Q ss_pred ccccccCCccHHHHHHhcCCHHHHHHHHhcCC
Q 040751 293 NIADKDRKMTALHLAAGQGNAEIVDAIISKNP 324 (405)
Q Consensus 293 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~ 324 (405)
+..+ ..|.||+|+|+..++.++++.|.++++
T Consensus 210 ~~~~-~~g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 210 SLKN-CHNDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp TCCC-TTSCCTTTTCSSHHHHHHHTC------
T ss_pred CCcC-CCCCCHHHHHHhcCcHHHHhhhccCCC
Confidence 3333 489999999999999999999987654
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.3e-38 Score=267.37 Aligned_cols=229 Identities=26% Similarity=0.261 Sum_probs=199.9
Q ss_pred cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751 99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD 178 (405)
Q Consensus 99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 178 (405)
+..+.+|||.|+..|+.+.+++|++.+... ++..+..|.||||+|+..|+.+++++|++.|++
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 65 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSL-----------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG-----------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhh-----------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC
Confidence 345789999999999999999999987543 456788999999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCC
Q 040751 179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT 258 (405)
Q Consensus 179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 258 (405)
++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||.|+..++. +++++|++.+.+ ++.++..|.|
T Consensus 66 ~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~-~~~~~~~g~t 141 (231)
T 3aji_A 66 VN-DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRH--EIAVMLLEGGAN-PDAKDHYDAT 141 (231)
T ss_dssp SC-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCC
T ss_pred CC-CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CCCcCCCCCc
Confidence 88 7888999999999999999999999999999999999999999999999999 999999988766 6778888999
Q ss_pred HHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHH
Q 040751 259 PIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFL 338 (405)
Q Consensus 259 ~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l 338 (405)
|||+|+..| +.+++++|++.+.++ +..+ ..|.||||+|+..++.+++++|+++|++
T Consensus 142 ~L~~A~~~~---------~~~~v~~Ll~~g~~~-~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~------------- 197 (231)
T 3aji_A 142 AMHRAAAKG---------NLKMVHILLFYKAST-NIQD-TEGNTPLHLACDEERVEEAKFLVTQGAS------------- 197 (231)
T ss_dssp HHHHHHHHT---------CHHHHHHHHHTTCCS-CCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred HHHHHHHcC---------CHHHHHHHHhcCCCc-cccC-CCCCCHHHHHHHCCCHHHHHHHHHCCCC-------------
Confidence 999999887 557888999888776 3333 4888999999999999999999998876
Q ss_pred HHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcccccc
Q 040751 339 HYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNY 382 (405)
Q Consensus 339 ~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~ 382 (405)
++.+|..|.|||++|++.++.+++++|+++ |+++
T Consensus 198 ---------~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~-~a~i 231 (231)
T 3aji_A 198 ---------IYIENKEEKTPLQVAKGGLGLILKRLAEGE-EASM 231 (231)
T ss_dssp ---------SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH-HHCC
T ss_pred ---------CCCCCCCCCCHHHHHHhhHHHHHHHHHccc-cccC
Confidence 455667788888898888899999998886 7653
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=265.79 Aligned_cols=235 Identities=22% Similarity=0.270 Sum_probs=203.6
Q ss_pred ccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751 96 LQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE 175 (405)
Q Consensus 96 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 175 (405)
+..|..|.|||+.|+..|+.+++++|+++|.++ +..+..|.||||+|+..|+.+++++|++.
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDV------------------RQPDKENVTLLHWAAINNRIDLVKYYISK 64 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCc------------------CCCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 456778899999999999999999999999874 37788899999999999999999999999
Q ss_pred CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccC
Q 040751 176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQY 255 (405)
Q Consensus 176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~ 255 (405)
|.+++...+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++. +++++|++.+.. ++..+..
T Consensus 65 ~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~~~~Ll~~~~~-~~~~~~~ 141 (240)
T 3eu9_A 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHT--SIVAYLIAKGQD-VDMMDQN 141 (240)
T ss_dssp TCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTT
T ss_pred CCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHH--HHHHHHHhcCCC-ccccCCC
Confidence 9998866667799999999999999999999999999999999999999999999999 999999998765 6788889
Q ss_pred CCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 040751 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335 (405)
Q Consensus 256 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 335 (405)
|.||||+|+..+. ..+++++|++.+.+. +......|.||||+|+..++.+++++|+++|++
T Consensus 142 g~t~l~~a~~~~~--------~~~~~~~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------- 202 (240)
T 3eu9_A 142 GMTPLMWAAYRTH--------SVDPTRLLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---------- 202 (240)
T ss_dssp SCCHHHHHHHHCC--------SSTTHHHHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC----------
T ss_pred CCcHHHHHHHhCC--------hHHHHHHHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence 9999999997762 357889999999887 333434889999999999999999999999877
Q ss_pred hHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccc
Q 040751 336 NFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYD 383 (405)
Q Consensus 336 t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~ 383 (405)
++.++..|.|||++|++.|+.+++++|++. |++..
T Consensus 203 ------------~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~-~~~~~ 237 (240)
T 3eu9_A 203 ------------VDAQNIKGESALDLAKQRKNVWMINHLQEA-RQAKG 237 (240)
T ss_dssp ------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH-C----
T ss_pred ------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHh-hhccC
Confidence 456677889999999999999999999997 76654
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1e-37 Score=264.49 Aligned_cols=217 Identities=21% Similarity=0.298 Sum_probs=192.2
Q ss_pred CchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcc-cCCCCCcHHHHHHh
Q 040751 153 KNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS--TSVSH-EGPNGKTALHAAAM 229 (405)
Q Consensus 153 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g--~~~~~-~~~~~~t~L~~a~~ 229 (405)
|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..|+.+++++|+++| ++++. .+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 6899999999999999999999999887668999999999999999999999999999 55555 77899999999999
Q ss_pred cCCccHHHHHHHHHhh-hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHH
Q 040751 230 KFDLVDTALRKLLEKK-ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308 (405)
Q Consensus 230 ~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~ 308 (405)
.++. +++++|++.+ ...++..+..|.||||+|+..+ +.+++++|++++.++ +..+ ..|.||||+|+
T Consensus 82 ~~~~--~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~---------~~~~~~~Ll~~g~~~-~~~~-~~g~t~L~~A~ 148 (228)
T 2dzn_A 82 VGNL--EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK---------WFEVSQFLIENGASV-RIKD-KFNQIPLHRAA 148 (228)
T ss_dssp HCCH--HHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTT---------CHHHHHHHHHTTCCS-CCCC-TTSCCHHHHHH
T ss_pred cCCH--HHHHHHHhCCCCcccccCCcCCCCHHHHHHHcC---------CHhHHHHHHHcCCCc-cccC-CCCCCHHHHHH
Confidence 9999 9999999986 2347888899999999999988 557999999998876 3333 48999999999
Q ss_pred hcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCC
Q 040751 309 GQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQ 388 (405)
Q Consensus 309 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~ 388 (405)
..|+.+++++|++.|+.. ++.+|..|+||||+|+..|+.+++++|++..|+|++.+|..
T Consensus 149 ~~~~~~~v~~Ll~~g~~~---------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~ 207 (228)
T 2dzn_A 149 SVGSLKLIELLCGLGKSA---------------------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207 (228)
T ss_dssp HTTCHHHHHHHHTTTCCC---------------------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTT
T ss_pred HcCCHHHHHHHHhcCccc---------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCC
Confidence 999999999999998433 56677889999999999999999999994449999999999
Q ss_pred CCchhhhhhcccccC
Q 040751 389 NVSVEHILDYEHILD 403 (405)
Q Consensus 389 g~t~l~~a~~~~~~~ 403 (405)
|+||+++|.+.+..+
T Consensus 208 g~t~l~~A~~~~~~~ 222 (228)
T 2dzn_A 208 GAKAEDVALNEQVKK 222 (228)
T ss_dssp SCBGGGGCSSTTHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999999876543
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.5e-39 Score=276.39 Aligned_cols=224 Identities=19% Similarity=0.240 Sum_probs=164.0
Q ss_pred cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCH-HHHHHHHhc
Q 040751 97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNV-DVVKILTKE 175 (405)
Q Consensus 97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-~~~~~Ll~~ 175 (405)
.+|..+.+||+.|+..|+.++|++|+++++.+... ....++..+..|.|||+.|+..+.. .++++|++.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~----------~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~ 75 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLED----------AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS 75 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------C
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccc----------ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC
Confidence 45677889999999999999999999998764311 1122456778899999999987765 488999999
Q ss_pred CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccC
Q 040751 176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQY 255 (405)
Q Consensus 176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~ 255 (405)
|++++ ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||++.|+..+.. ++++.|++.+.+ ++.++..
T Consensus 76 Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~g~~-~n~~d~~ 151 (269)
T 4b93_B 76 GLGVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF--QVVKCLLDSNAK-PNKKDLS 151 (269)
T ss_dssp CCCTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-SCCCCTT
T ss_pred CCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChH--HHHHHHHHCCCC-CCCCCCC
Confidence 99998 7899999999999999999999999999999999999999999999999999 999999998766 7888999
Q ss_pred CCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCC
Q 040751 256 GWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGW 335 (405)
Q Consensus 256 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 335 (405)
|.||||+|+..| +.+++++|++.|+++ +... ..|.||||+|+..|+.+++++|+++|+++
T Consensus 152 g~TpL~~A~~~g---------~~~~v~~Ll~~gadv-n~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~--------- 211 (269)
T 4b93_B 152 GNTPLIYACSGG---------HHELVALLLQHGASI-NASN-NKGNTALHEAVIEKHVFVVELLLLHGASV--------- 211 (269)
T ss_dssp CCCHHHHHHHTT---------CGGGHHHHHHTTCCT-TCBC-TTSCBHHHHHHHTTCHHHHHHHHHTTCCS---------
T ss_pred CCCHHHHHHHCC---------CHHHHHHHHHCCCCC-Cccc-cCCCcHHHHHHHcCCHHHHHHHHHCCCCC---------
Confidence 999999999998 568999999999887 4433 48999999999999999999999999874
Q ss_pred hHHHHHHHhccccccccCCCCCHHHHHHHhCC
Q 040751 336 NFLHYAVVTRSLINEGDAMGNTPLHVLAAVRR 367 (405)
Q Consensus 336 t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~ 367 (405)
+.+|..|+||||+|+++++
T Consensus 212 -------------~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 212 -------------QVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp -------------CCCCTTSCCSGGGSCTTCH
T ss_pred -------------CCcCCCCCCHHHHHHhCCc
Confidence 4556667777777766554
No 29
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.5e-37 Score=263.97 Aligned_cols=225 Identities=23% Similarity=0.237 Sum_probs=149.4
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 142 (405)
+.+|||.| +..|+.+.++++++ ..+..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 6 ~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------- 67 (231)
T 3aji_A 6 SNIMICNL--AYSGKLDELKERIL---ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN------------- 67 (231)
T ss_dssp SSSHHHHH--HHHTCHHHHHHHHH---HCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-------------
T ss_pred ccchHHHH--HHhCCHHHHHHHHH---hchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-------------
Confidence 55666766 66666666666644 2344455566667777777777777777777777766543
Q ss_pred HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT 222 (405)
Q Consensus 143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 222 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++..+..|.|
T Consensus 68 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 141 (231)
T 3aji_A 68 -----DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDAT 141 (231)
T ss_dssp -----CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred -----CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence 556666777777777777777777777776665 55666677777777777777777777777777766666777
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCcc
Q 040751 223 ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMT 302 (405)
Q Consensus 223 ~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t 302 (405)
|||.|+..++. +++++|+..+.+ ++.++..|.||||+|+..+ +.+++++|+++|.++ +..+ ..|.|
T Consensus 142 ~L~~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-~~~~-~~g~t 207 (231)
T 3aji_A 142 AMHRAAAKGNL--KMVHILLFYKAS-TNIQDTEGNTPLHLACDEE---------RVEEAKFLVTQGASI-YIEN-KEEKT 207 (231)
T ss_dssp HHHHHHHHTCH--HHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTT---------CHHHHHHHHHTTCCS-CCCC-TTSCC
T ss_pred HHHHHHHcCCH--HHHHHHHhcCCC-ccccCCCCCCHHHHHHHCC---------CHHHHHHHHHCCCCC-CCCC-CCCCC
Confidence 77777777766 777777665544 5566666777777777666 445666777776655 2222 36777
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCc
Q 040751 303 ALHLAAGQGNAEIVDAIISKNPE 325 (405)
Q Consensus 303 ~l~~A~~~~~~~~v~~Ll~~~~~ 325 (405)
|+++|+..++.+++++|.++|++
T Consensus 208 ~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 208 PLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHHHHHHHcccccc
Confidence 77777777777777777766543
No 30
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-38 Score=283.76 Aligned_cols=277 Identities=12% Similarity=0.095 Sum_probs=197.7
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 142 (405)
..+|+|.. ..+++++|++ .+..++..+..|.|+++ |+.++|++|+++|.+++..... ......
T Consensus 23 ~~~~~~~~------~~dlv~~ll~----~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~--~a~~~~ 85 (327)
T 1sw6_A 23 TAGPIITF------THDLTSDFLS----SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMP--TSLNND 85 (327)
T ss_dssp --CCEEEC------CTTCCCSTTT----SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC---------------
T ss_pred cccchhhh------cCchHHHHhh----CCcccccCCCCCCcccC-----chhHHHHHHHHhccCCccccch--Hhhhcc
Confidence 55666644 3355666655 57777888888888876 8888888888888765421000 000000
Q ss_pred HH-HhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751 143 RQ-MIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221 (405)
Q Consensus 143 ~~-~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 221 (405)
.. --........+.+|.|+..+..+++++|++.|++++...+..|.||||+|+..|+.++|++|+++|++++.++..|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~ 165 (327)
T 1sw6_A 86 SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165 (327)
T ss_dssp ------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCC
T ss_pred cccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 00 00001111233458888888889999999999999843899999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCC---ccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHH----cChhhhhhhccccchhHHHHhhc------
Q 040751 222 TALHAAAMKFD---LVDTALRKLLEKKENLIKETDQYGWTPIHYAAY----HGMYWINRFYGNYGTVNLLLETD------ 288 (405)
Q Consensus 222 t~L~~a~~~~~---~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~----~~~~~~~~~l~~~~~~~~Ll~~~------ 288 (405)
||||+|+..++ . +.++.|++.....++.++..|+||||+|+. .| +.+++++|++.+
T Consensus 166 TpLh~A~~~g~~~~~--~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g---------~~~~v~~Ll~~~~~~~~~ 234 (327)
T 1sw6_A 166 SCLVKAVKSVNNYDS--GTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG---------CSAAAKYYLDILMGWIVK 234 (327)
T ss_dssp CHHHHHHHSSHHHHT--TCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT---------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcccccH--HHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc---------cHHHHHHHHHHHHHHHhc
Confidence 99999999987 6 788888888766689999999999999998 55 446777777663
Q ss_pred --------------ccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCC
Q 040751 289 --------------QSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAM 354 (405)
Q Consensus 289 --------------~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~ 354 (405)
.++ +. .+..|.||||.|+. +++|++++ ++.+|..
T Consensus 235 ~~~~~i~~~~~~~g~~~-~~-~~~~g~t~L~~a~~------~~~Ll~~~------------------------~n~~d~~ 282 (327)
T 1sw6_A 235 KQNRPIQSGTNEKESKP-ND-KNGERKDSILENLD------LKWIIANM------------------------LNAQDSN 282 (327)
T ss_dssp GGGCCEEEC------------------CHHHHHCS------HHHHHHHT------------------------TTCCCTT
T ss_pred ccchHHHhhhhcccCCc-cc-ccccCCChhHHHHH------HHHHHHhC------------------------CCCCCCC
Confidence 222 22 22367777777764 66666652 6777889
Q ss_pred CCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhccc
Q 040751 355 GNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEH 400 (405)
Q Consensus 355 g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~ 400 (405)
|+||||+|++.|+.++|++||++ |+|++.+|..|+||||+|++.+
T Consensus 283 G~TpLh~A~~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 283 GDTCLNIAARLGNISIVDALLDY-GADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp SCCHHHHHHHHCCHHHHHHHHHT-TCCTTCCCTTSCCGGGGTCC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHhcC
Confidence 99999999999999999999998 9999999999999999999864
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=269.58 Aligned_cols=217 Identities=19% Similarity=0.260 Sum_probs=168.2
Q ss_pred hccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc-------cccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCcccCCC
Q 040751 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR-------YSANNDGKTPLYMAAESRSS-DMVLALLENSTSVSHEGPN 219 (405)
Q Consensus 148 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~-------~~~~~~g~t~L~~a~~~~~~-~~v~~Ll~~g~~~~~~~~~ 219 (405)
.+|..+.++|+.|+..|+.+++++|++.|.... ...+..+.|||++|+..+.. .+++.|++.|++++..|.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~ 85 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQD 85 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCC
Confidence 456678899999999999999999999987532 24566889999999988775 4889999999999999999
Q ss_pred CCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccC
Q 040751 220 GKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDR 299 (405)
Q Consensus 220 ~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~ 299 (405)
|.||||+|+..|+. +++++|+..+.+ ++.++..|.||++.|+..+ +.+++++|++.+.++ +..+ ..
T Consensus 86 G~TpLh~A~~~g~~--~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~-n~~d-~~ 151 (269)
T 4b93_B 86 GSSPLHVAALHGRA--DLIPLLLKHGAN-AGARNADQAVPLHLACQQG---------HFQVVKCLLDSNAKP-NKKD-LS 151 (269)
T ss_dssp SCCHHHHHHHTTCT--THHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT---------CHHHHHHHHHTTCCS-CCCC-TT
T ss_pred CCCHHHHHHHcCcH--HHHHHHHhcCCC-cCccCCCCCCccccccccC---------hHHHHHHHHHCCCCC-CCCC-CC
Confidence 99999999999999 999999998776 7888999999999999988 557999999999887 4333 48
Q ss_pred CccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccc
Q 040751 300 KMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQ 379 (405)
Q Consensus 300 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g 379 (405)
|.||||+|+..|+.+++++|+++|++ +|.++..|.||||+|+..|+.++|++||++ |
T Consensus 152 g~TpL~~A~~~g~~~~v~~Ll~~gad----------------------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-G 208 (269)
T 4b93_B 152 GNTPLIYACSGGHHELVALLLQHGAS----------------------INASNNKGNTALHEAVIEKHVFVVELLLLH-G 208 (269)
T ss_dssp CCCHHHHHHHTTCGGGHHHHHHTTCC----------------------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT-T
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCC----------------------CCccccCCCcHHHHHHHcCCHHHHHHHHHC-C
Confidence 99999999999999999999999887 456677899999999999999999999997 9
Q ss_pred cccccccCCCCchhhhhhcccc
Q 040751 380 VNYDAVNKQNVSVEHILDYEHI 401 (405)
Q Consensus 380 ~d~~~~~~~g~t~l~~a~~~~~ 401 (405)
+|++.+|..|+||||+|++++.
T Consensus 209 ad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 209 ASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CCSCCCCTTSCCSGGGSCTTCH
T ss_pred CCCCCcCCCCCCHHHHHHhCCc
Confidence 9999999999999999998764
No 32
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.8e-37 Score=269.63 Aligned_cols=252 Identities=17% Similarity=0.164 Sum_probs=185.6
Q ss_pred hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751 58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES 137 (405)
Q Consensus 58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 137 (405)
..+.+|+||||+| +..|+.+++++|++. ......++..+..|.||||+|+..|+.++|++|+++|++++
T Consensus 4 ~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-------- 72 (282)
T 1oy3_D 4 YVTEDGDTALHLA--VIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-------- 72 (282)
T ss_dssp CCCTTCCCHHHHH--HHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS--------
T ss_pred ccCCCCCcHHHHH--HHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--------
Confidence 4567799999999 999999999999873 23333478889999999999999999999999999999854
Q ss_pred hhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc------------ccCCCCCcHHHHHHHcCC-HHHHH
Q 040751 138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY------------SANNDGKTPLYMAAESRS-SDMVL 204 (405)
Q Consensus 138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~------------~~~~~g~t~L~~a~~~~~-~~~v~ 204 (405)
..+..|.||||+|+..|+.+++++|+++++.... .....+.++++.+...+. .....
T Consensus 73 ----------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (282)
T 1oy3_D 73 ----------VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142 (282)
T ss_dssp ----------CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred ----------CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhh
Confidence 7888999999999999999999999998876431 112245566666665543 34445
Q ss_pred HHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc-CCCCHHHHHHHcChhhhhhhccccchhHH
Q 040751 205 ALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ-YGWTPIHYAAYHGMYWINRFYGNYGTVNL 283 (405)
Q Consensus 205 ~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~ 283 (405)
.+...+.+++..+..|.||||+|+..++. +++++|++.+.+ ++..+. .|.||||+|+..| +.+++++
T Consensus 143 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~---------~~~~v~~ 210 (282)
T 1oy3_D 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDA--EMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQ---------AASVLEL 210 (282)
T ss_dssp -CCCGGGGTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTT---------CHHHHHH
T ss_pred hhhhhhhcCCCcCCCCcCHHHHHHHcCCH--HHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcC---------CHHHHHH
Confidence 55567788899999999999999999999 999999998876 566664 5999999999988 5579999
Q ss_pred HHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhc
Q 040751 284 LLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTR 345 (405)
Q Consensus 284 Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 345 (405)
|+++|.++ +..+ ..|.||||+|+..++.+++++|+++|+++ +.++..|.||+++|....
T Consensus 211 Ll~~gad~-~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~a~~~~ 269 (282)
T 1oy3_D 211 LLKAGADP-TARM-YGGRTPLGSALLRPNPILARLLRAHGAPE-PEDGGDKLSPCSSSGSDS 269 (282)
T ss_dssp HHHTTCCT-TCCC-TTSCCHHHHHHTSSCHHHHHHHHHTTCCC-CCCC--------------
T ss_pred HHHcCCCC-cccc-cCCCCHHHHHHHcCCcHHHHHHHHcCCCc-CcCCCcccccccccCCcc
Confidence 99999887 4433 48999999999999999999999999997 778888888888886543
No 33
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=3.6e-37 Score=269.48 Aligned_cols=227 Identities=20% Similarity=0.250 Sum_probs=196.9
Q ss_pred ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751 94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT 173 (405)
Q Consensus 94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 173 (405)
.++..|..|.||||+|+..|+.++|++|+++|++++ .. +|.||||+|+..|+.+++++|+
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~--~g~t~L~~A~~~g~~~~v~~Ll 82 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKN------------------LL--ENEFPLHQAATLEDTKIVKILL 82 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGS------------------CC--TTCCHHHHHTTSSSCHHHHHHH
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC------------------CC--CCCCHHHHHHHcCCHHHHHHHH
Confidence 478889999999999999999999999999998753 33 5899999999999999999999
Q ss_pred hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC-CcHHHHHHhcCCccHHHHHHHHHhhhhhhhhc
Q 040751 174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNG-KTALHAAAMKFDLVDTALRKLLEKKENLIKET 252 (405)
Q Consensus 174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~-~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~ 252 (405)
++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..++. +++++|++.+... .
T Consensus 83 ~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~--~~v~~Ll~~g~~~---~ 156 (285)
T 3kea_A 83 FSGLDDS-QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV--SIVSYFLSEIPST---F 156 (285)
T ss_dssp HTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCH--HHHHHHHTTSCTT---C
T ss_pred HCCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCH--HHHHHHHhCCCcc---c
Confidence 9999988 688899999999999999999999999999999999999 7999999999999 9999999987653 2
Q ss_pred cc-CCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccH-HHHHHhcCCHHHHHHHHhcCCcccccc
Q 040751 253 DQ-YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA-LHLAAGQGNAEIVDAIISKNPECYELV 330 (405)
Q Consensus 253 ~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~-l~~A~~~~~~~~v~~Ll~~~~~~~~~~ 330 (405)
+. .|.||||+|+..| +.+++++|+++|.++ +..+ ..|.|| ||+|+..++.+++++|+++|+++ +..
T Consensus 157 ~~~~g~t~L~~A~~~g---------~~~~v~~Ll~~gad~-n~~~-~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~-~~~ 224 (285)
T 3kea_A 157 DLAILLSCIHITIKNG---------HVDMMILLLDYMTST-NTNN-SLLFIPDIKLAIDNKDIEMLQALFKYDINI-YSA 224 (285)
T ss_dssp CCSTHHHHHHHHHHTT---------CHHHHHHHHHHHHHT-CTTC-CCBCCTTHHHHHHHTCHHHHHHHTTSCBCS-TTT
T ss_pred cccCCccHHHHHHHcC---------hHHHHHHHHHcCCCC-Cccc-CCCCChHHHHHHHcCCHHHHHHHHHcCCCC-CCC
Confidence 32 7899999999998 557999999999887 4333 378887 99999999999999999999886 322
Q ss_pred cCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccC
Q 040751 331 DNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNK 387 (405)
Q Consensus 331 ~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~ 387 (405)
+ +.|+..|+.+++++|+++ |+++...+.
T Consensus 225 ---------------------~-------~~a~~~~~~~iv~~Ll~~-g~~~~~~~~ 252 (285)
T 3kea_A 225 ---------------------N-------LENVLLDDAEIAKMIIEK-HVEYKSDSY 252 (285)
T ss_dssp ---------------------T-------GGGGTTTCHHHHHHHHHH-HHHHTTCTT
T ss_pred ---------------------C-------hhhhhcCCHHHHHHHHHc-CCCCCCccc
Confidence 2 245678899999999998 998775543
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8e-37 Score=258.95 Aligned_cols=214 Identities=21% Similarity=0.187 Sum_probs=191.4
Q ss_pred CHHHHHHhhcCCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc-ccCCCChHHHH
Q 040751 31 DPKFFKAAADGNVEPFKDMAREKIESL-LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQ-VNAKGDTPLHV 108 (405)
Q Consensus 31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~t~L~~ 108 (405)
.+|||.|++.|+.++|++|++.+.+.. ..+..|.||||+| +..|+.+++++|++. .....+.. .+..|.||||+
T Consensus 3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~g~t~L~~ 78 (228)
T 2dzn_A 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWS--VSFQAHEITSFLLSK--MENVNLDDYPDDSGWTPFHI 78 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHH--HHTTCHHHHHHHHHT--CTTCCGGGCCCTTSCCHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHH--HHcCCHHHHHHHHhc--cccccccccCCCCCCCHHHH
Confidence 458999999999999999999998776 4788899999999 999999999999872 11144455 78899999999
Q ss_pred HHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCC
Q 040751 109 AAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK 188 (405)
Q Consensus 109 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~ 188 (405)
|+..|+.+++++|+++|...+ ++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.
T Consensus 79 A~~~~~~~~~~~Ll~~g~~~~----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~ 141 (228)
T 2dzn_A 79 ACSVGNLEVVKSLYDRPLKPD----------------LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQ 141 (228)
T ss_dssp HHHHCCHHHHHHHHSSSSCCC----------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSC
T ss_pred HHHcCCHHHHHHHHhCCCCcc----------------cccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCC
Confidence 999999999999999994333 45788899999999999999999999999999988 7889999
Q ss_pred cHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751 189 TPLYMAAESRSSDMVLALLENS-TSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267 (405)
Q Consensus 189 t~L~~a~~~~~~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~ 267 (405)
||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++. +++++|++..+.+++.++..|.||+++|+..+
T Consensus 142 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~--~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG--DAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred CHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCH--HHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999 99999995444558899999999999997654
No 35
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=252.17 Aligned_cols=231 Identities=20% Similarity=0.196 Sum_probs=200.5
Q ss_pred hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751 58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES 137 (405)
Q Consensus 58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 137 (405)
..+..|.+||++| +..|+.+++++|++ .+..++..+..|.||||+|+..|+.+++++|+++|++..
T Consensus 4 ~~d~~~~~~l~~A--~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-------- 69 (240)
T 3eu9_A 4 HIDDYSTWDIVKA--TQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-------- 69 (240)
T ss_dssp CCSCGGGCCHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--------
T ss_pred ccccccchHHHHH--HHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch--------
Confidence 3466799999999 99999999999987 467788889999999999999999999999999998753
Q ss_pred hhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC
Q 040751 138 GVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG 217 (405)
Q Consensus 138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~ 217 (405)
...+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 70 ---------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~ 139 (240)
T 3eu9_A 70 ---------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139 (240)
T ss_dssp ---------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred ---------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccC
Confidence 2344568999999999999999999999999987 678899999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhcCC-ccHHHHHHHHHhhhhhhhhccc-CCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccc
Q 040751 218 PNGKTALHAAAMKFD-LVDTALRKLLEKKENLIKETDQ-YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIA 295 (405)
Q Consensus 218 ~~~~t~L~~a~~~~~-~~~~~v~~Ll~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~ 295 (405)
..|.||||.|+..+. . +++++|+..+.+ ++..+. .|.||||+|+..| +.+++++|++++.++ +..
T Consensus 140 ~~g~t~l~~a~~~~~~~--~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~-~~~ 206 (240)
T 3eu9_A 140 QNGMTPLMWAAYRTHSV--DPTRLLLTFNVS-VNLGDKYHKNTALHWAVLAG---------NTTVISLLLEAGANV-DAQ 206 (240)
T ss_dssp TTSCCHHHHHHHHCCSS--TTHHHHHHTTCC-TTCCCTTTCCCHHHHHHHHT---------CHHHHHHHHHHTCCT-TCB
T ss_pred CCCCcHHHHHHHhCChH--HHHHHHHhcCCC-cchhhccCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC-CCc
Confidence 999999999997766 5 777888777765 566665 8999999999998 557999999999877 333
Q ss_pred cccCCccHHHHHHhcCCHHHHHHHHhcCCcc
Q 040751 296 DKDRKMTALHLAAGQGNAEIVDAIISKNPEC 326 (405)
Q Consensus 296 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 326 (405)
. ..|.||+++|+..++.+++++|++.+++.
T Consensus 207 ~-~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 207 N-IKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp C-TTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred C-CCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 3 48999999999999999999999988764
No 36
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-36 Score=266.39 Aligned_cols=240 Identities=19% Similarity=0.158 Sum_probs=208.5
Q ss_pred HhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHH
Q 040751 37 AAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSG 116 (405)
Q Consensus 37 A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~ 116 (405)
+++..+.+.|..++..+ +.+..+..|.||||+| +..|+.+++++|++ .+..++.. +|.||||+|+..|+.+
T Consensus 6 ~i~~~~~~~v~~lL~~~-~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~--~g~t~L~~A~~~g~~~ 76 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK-DTFKADVHGHSASYYA--IADNNVRLVCTLLN----AGALKNLL--ENEFPLHQAATLEDTK 76 (285)
T ss_dssp TGGGCCHHHHHHHHHST-TTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTGGGSCC--TTCCHHHHHTTSSSCH
T ss_pred HHHhcCHHHHHHHHHhC-CCCccCCCCCCHHHHH--HHcCCHHHHHHHHh----CCCCCCCC--CCCCHHHHHHHcCCHH
Confidence 35566767777777655 4668888899999999 99999999999988 35556655 4999999999999999
Q ss_pred HHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCC-CcHHHHHH
Q 040751 117 IVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG-KTPLYMAA 195 (405)
Q Consensus 117 ~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g-~t~L~~a~ 195 (405)
++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..| .||||+|+
T Consensus 77 ~v~~Ll~~ga~~~------------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~ 137 (285)
T 3kea_A 77 IVKILLFSGLDDS------------------QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAV 137 (285)
T ss_dssp HHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHH
T ss_pred HHHHHHHCCCCCC------------------CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHH
Confidence 9999999999854 788899999999999999999999999999988 778888 79999999
Q ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCH-HHHHHHcChhhhhhh
Q 040751 196 ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTP-IHYAAYHGMYWINRF 274 (405)
Q Consensus 196 ~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~ 274 (405)
..|+.+++++|+++|++.... ..|.||||+|+..++. +++++|++.+.+ ++.++..|.|| ||+|+..|
T Consensus 138 ~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~--~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~------- 206 (285)
T 3kea_A 138 MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHV--DMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNK------- 206 (285)
T ss_dssp HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCH--HHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHT-------
T ss_pred HcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChH--HHHHHHHHcCCC-CCcccCCCCChHHHHHHHcC-------
Confidence 999999999999999877332 2799999999999999 999999998766 78899999998 99999998
Q ss_pred ccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcc
Q 040751 275 YGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPEC 326 (405)
Q Consensus 275 l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~ 326 (405)
+.+++++|+++|+++.. .. +.|+..++.+++++|+++|++.
T Consensus 207 --~~~~v~~Ll~~gad~~~-~~--------~~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 207 --DIEMLQALFKYDINIYS-AN--------LENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp --CHHHHHHHTTSCBCSTT-TT--------GGGGTTTCHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHcCCCCCC-CC--------hhhhhcCCHHHHHHHHHcCCCC
Confidence 55799999999988732 21 3567899999999999999875
No 37
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.4e-36 Score=252.51 Aligned_cols=215 Identities=20% Similarity=0.196 Sum_probs=193.3
Q ss_pred CCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHH
Q 040751 41 GNVEPFKDMAREKIESL-LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVT 119 (405)
Q Consensus 41 g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~ 119 (405)
|+.++|++|++.|.+.+ ..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|+..|+.++++
T Consensus 2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 75 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHNQTDRTGETALHLA--ARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVFQ 75 (223)
T ss_dssp ---CCEETTEETTCCTTCCCTTTCCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CcHHHHHHHHHcCCCcccccCCCCCchHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence 78999999999998877 4477899999999 99999999999987 46778889999999999999999999999
Q ss_pred HHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCC
Q 040751 120 FLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRS 199 (405)
Q Consensus 120 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~ 199 (405)
+|+++++.. ++..+..|.||||+|+..++.+++++|++.|++++ ..+..|.||||+|+..|+
T Consensus 76 ~Ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~ 137 (223)
T 2f8y_A 76 ILIRNRATD-----------------LDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNN 137 (223)
T ss_dssp HHHHBTTSC-----------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTC
T ss_pred HHHHcCCCC-----------------cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCC
Confidence 999998732 45778899999999999999999999999999988 788899999999999999
Q ss_pred HHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccc
Q 040751 200 SDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYG 279 (405)
Q Consensus 200 ~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~ 279 (405)
.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.+ ++.++..|.||+++|+..+ +.+
T Consensus 138 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~---------~~~ 205 (223)
T 2f8y_A 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSY--ETAKVLLDHFAN-RDITDHMDRLPRDIAQERM---------HHD 205 (223)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTT---------CHH
T ss_pred HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCH--HHHHHHHHcCCC-CccccccCCCHHHHHHHhc---------chH
Confidence 9999999999999999999999999999999999 999999998876 7888999999999999998 557
Q ss_pred hhHHHHhhcccc
Q 040751 280 TVNLLLETDQSA 291 (405)
Q Consensus 280 ~~~~Ll~~~~~~ 291 (405)
++++|++++...
T Consensus 206 i~~~L~~~g~~~ 217 (223)
T 2f8y_A 206 IVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHHHcCCCc
Confidence 889999888754
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.3e-35 Score=247.41 Aligned_cols=215 Identities=26% Similarity=0.283 Sum_probs=188.7
Q ss_pred hhcccHHHHHHHHHhCCcccc-cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCc
Q 040751 76 RENVSTEFVEEILEKCPSLLL-QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN 154 (405)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 154 (405)
|+.+++++|++ .+..++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.
T Consensus 2 g~~~~i~~Ll~----~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~ 59 (223)
T 2f8y_A 2 DAPAVISDFIY----QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN------------------IQDNMGR 59 (223)
T ss_dssp ---CCEETTEE----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSC
T ss_pred CcHHHHHHHHH----cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC------------------CcCCCCC
Confidence 56677777755 234444 458899999999999999999999999998854 7889999
Q ss_pred hHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCcc
Q 040751 155 TALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLV 234 (405)
Q Consensus 155 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~ 234 (405)
||||+|+..|+.+++++|++.+.......+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.
T Consensus 60 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~- 138 (223)
T 2f8y_A 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV- 138 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCH-
Confidence 9999999999999999999998843347889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHH
Q 040751 235 DTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAE 314 (405)
Q Consensus 235 ~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~ 314 (405)
+++++|++.+.+ ++.++..|.||||+|+..| +.+++++|++++.+. +..+ ..|.||+++|+..++.+
T Consensus 139 -~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~-~~~~-~~g~t~l~~A~~~~~~~ 205 (223)
T 2f8y_A 139 -DAAVVLLKNGAN-KDMQNNREETPLFLAAREG---------SYETAKVLLDHFANR-DITD-HMDRLPRDIAQERMHHD 205 (223)
T ss_dssp -HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHT---------CHHHHHHHHHTTCCT-TCCC-TTCCCHHHHHHHTTCHH
T ss_pred -HHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcC---------CHHHHHHHHHcCCCC-cccc-ccCCCHHHHHHHhcchH
Confidence 999999998765 7888999999999999998 557999999999877 3333 48999999999999999
Q ss_pred HHHHHHhcCCcc
Q 040751 315 IVDAIISKNPEC 326 (405)
Q Consensus 315 ~v~~Ll~~~~~~ 326 (405)
++++|+++|+..
T Consensus 206 i~~~L~~~g~~~ 217 (223)
T 2f8y_A 206 IVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHHHcCCCc
Confidence 999999999864
No 39
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-36 Score=268.43 Aligned_cols=273 Identities=19% Similarity=0.212 Sum_probs=217.4
Q ss_pred HHhhcCCCchhhhhHHHHHHHh---------hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHH
Q 040751 36 KAAADGNVEPFKDMAREKIESL---------LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPL 106 (405)
Q Consensus 36 ~A~~~g~~~~v~~ll~~~~~~~---------~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L 106 (405)
.+++.+..+.++.++....... ..+..|.||||+| +..|+.+++++|++. +.+++..+..|.|||
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A--~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L 77 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAA--CSSGDTEEVLRLLER----GADINYANVDGLTAL 77 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHH--HHHTCHHHHHHHHHH----CCCTTCBCTTCCBHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHH--HHcCCHHHHHHHHHc----CCCCcccCCCCCCHH
Confidence 4667777778888877653222 2234588999999 999999999999873 667888999999999
Q ss_pred HHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCC
Q 040751 107 HVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANND 186 (405)
Q Consensus 107 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 186 (405)
|+|+..|+.++|++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..
T Consensus 78 ~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~ 138 (299)
T 1s70_B 78 HQACIDDNVDMVKFLVENGANIN------------------QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-AVNSE 138 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC------------------CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCC
Confidence 99999999999999999999854 788899999999999999999999999999988 78899
Q ss_pred CCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHH
Q 040751 187 GKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAY 265 (405)
Q Consensus 187 g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~ 265 (405)
|.||||+|+..++.++++.++. .|.+++..+..+.+++. ..+..++..+.......+..|.||||+|+.
T Consensus 139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~ 208 (299)
T 1s70_B 139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML----------RDARQWLNSGHINDVRHAKSGGTALHVAAA 208 (299)
T ss_dssp SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH----------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH----------HHHHHHHhccCcchhhhcCCCCCHHHHHHH
Confidence 9999999999999999998875 45655443322222222 344555555555455567789999999999
Q ss_pred cChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhc
Q 040751 266 HGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTR 345 (405)
Q Consensus 266 ~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~ 345 (405)
.| +.+++++|++.+.++ +..+ ..|.||||+|+..|+.+++++|+++|+++
T Consensus 209 ~g---------~~~~v~~Ll~~g~d~-~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~gad~------------------- 258 (299)
T 1s70_B 209 KG---------YTEVLKLLIQARYDV-NIKD-YDGWTPLHAAAHWGKEEACRILVENLCDM------------------- 258 (299)
T ss_dssp HT---------CHHHHHHHHTTTCCT-TCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------------------
T ss_pred CC---------cHHHHHHHHHcCCCC-CCcC-CCCCcHHHHHHhcCCHHHHHHHHHcCCCC-------------------
Confidence 98 557999999999877 4333 48999999999999999999999999874
Q ss_pred cccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751 346 SLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377 (405)
Q Consensus 346 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~ 377 (405)
+.+|..|.|||++|++ +..++++.+++.
T Consensus 259 ---~~~d~~g~t~l~~A~~-~~~~~l~~l~~~ 286 (299)
T 1s70_B 259 ---EAVNKVGQTAFDVADE-DILGYLEELQKK 286 (299)
T ss_dssp ---TCCCTTSCCTTTSCCS-GGGHHHHHHHHH
T ss_pred ---CCcCCCCCCHHHHHHH-HHHHHHHHHHHH
Confidence 4556667777777754 445666666654
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=8.4e-36 Score=253.98 Aligned_cols=217 Identities=20% Similarity=0.225 Sum_probs=186.3
Q ss_pred hccCCCchHhHHHHhCCCHHHHHHHHhcCC----CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 040751 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDP----DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTA 223 (405)
Q Consensus 148 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 223 (405)
..|.+|.||||+|+..|+.+++++|++.+. +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhh-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 467899999999999999999999998875 455 678899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCccHHHHHHHHHhhhh-----hhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccccccccc
Q 040751 224 LHAAAMKFDLVDTALRKLLEKKEN-----LIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKD 298 (405)
Q Consensus 224 L~~a~~~~~~~~~~v~~Ll~~~~~-----~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~ 298 (405)
||+|+..++. +++++|+..+.. .++..+..|.||||+|+..| +.+++++|++.+.++ +.....
T Consensus 82 L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~-~~~~~~ 149 (236)
T 1ikn_D 82 LHLACEQGCL--ASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG---------YLGIVELLVSLGADV-NAQEPC 149 (236)
T ss_dssp HHHHHHHTCH--HHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTT---------CHHHHHHHHHHTCCT-TCCCTT
T ss_pred HHHHHHcCCH--HHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcC---------CHHHHHHHHHcCCCC-CCCCCC
Confidence 9999999999 999999998753 25677888999999999998 557999999999887 333333
Q ss_pred CCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhcc
Q 040751 299 RKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNT 378 (405)
Q Consensus 299 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~ 378 (405)
.|.||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++
T Consensus 150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~----------------------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~- 206 (236)
T 1ikn_D 150 NGRTALHLAVDLQNPDLVSLLLKCGAD----------------------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL- 206 (236)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHTTTCC----------------------SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------CCcccCCCCCHHHHHHccCchHHHHHHHHc-
Confidence 899999999999999999999999887 456677889999999999999999999998
Q ss_pred ccccc--cccCCCCchhhhhhccc
Q 040751 379 QVNYD--AVNKQNVSVEHILDYEH 400 (405)
Q Consensus 379 g~d~~--~~~~~g~t~l~~a~~~~ 400 (405)
|+++. ..+..|.||.+.+....
T Consensus 207 ga~~~~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 207 TLENLQMLPESEDEESYDTESEFT 230 (236)
T ss_dssp SCGGGSSCCCCCTTTCCCCC----
T ss_pred chhhhhcCCccchHHHHhhhcccc
Confidence 99887 88999999999876543
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-36 Score=269.54 Aligned_cols=259 Identities=17% Similarity=0.118 Sum_probs=197.4
Q ss_pred hhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc-------------ccCCCCh
Q 040751 38 AADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQ-------------VNAKGDT 104 (405)
Q Consensus 38 ~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~~g~t 104 (405)
+.....++|++|++.|++.+..+..|.++++ |+.+++++|++........... ......+
T Consensus 27 ~~~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-------g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 99 (327)
T 1sw6_A 27 IITFTHDLTSDFLSSPLKIMKALPSPVVNDN-------EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 99 (327)
T ss_dssp EEECCTTCCCSTTTSSCCCEECBCCCCCCCH-------HHHHHHHHHHHHHHC---------------------------
T ss_pred hhhhcCchHHHHhhCCcccccCCCCCCcccC-------chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccc
Confidence 3456667899999999988888888988866 8899999998743221110000 1111223
Q ss_pred HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhh-ccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751 105 PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKM-TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA 183 (405)
Q Consensus 105 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 183 (405)
.+|.|+..+..+++++|++.|++++ . .+..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn------------------~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~ 160 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLN------------------IPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YG 160 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSC------------------SCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BC
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcc------------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-Cc
Confidence 4688899999999999999999864 6 78999999999999999999999999999998 78
Q ss_pred CCCCCcHHHHHHHcCC---HHHHHHHHHcC-CCCcccCCCCCcHHHHHHh----cCCccHHHHHHHHHhh----------
Q 040751 184 NNDGKTPLYMAAESRS---SDMVLALLENS-TSVSHEGPNGKTALHAAAM----KFDLVDTALRKLLEKK---------- 245 (405)
Q Consensus 184 ~~~g~t~L~~a~~~~~---~~~v~~Ll~~g-~~~~~~~~~~~t~L~~a~~----~~~~~~~~v~~Ll~~~---------- 245 (405)
+..|.||||+|+..|+ .++++.|++++ ++++.++..|+||||+|+. .+.. ++++.|++..
T Consensus 161 d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~--~~v~~Ll~~~~~~~~~~~~~ 238 (327)
T 1sw6_A 161 DNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS--AAAKYYLDILMGWIVKKQNR 238 (327)
T ss_dssp CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCH--HHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccH--HHHHHHHHHHHHHHhcccch
Confidence 9999999999999998 78888888887 7899999999999999999 8888 9999999874
Q ss_pred ---------hhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHH
Q 040751 246 ---------ENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIV 316 (405)
Q Consensus 246 ---------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v 316 (405)
+..++.++..|.||||.|+ .+++|++.+ + +..+ ..|+||||+|+..|+.+++
T Consensus 239 ~i~~~~~~~g~~~~~~~~~g~t~L~~a~---------------~~~~Ll~~~--~-n~~d-~~G~TpLh~A~~~g~~~~v 299 (327)
T 1sw6_A 239 PIQSGTNEKESKPNDKNGERKDSILENL---------------DLKWIIANM--L-NAQD-SNGDTCLNIAARLGNISIV 299 (327)
T ss_dssp CEEEC----------------CHHHHHC---------------SHHHHHHHT--T-TCCC-TTSCCHHHHHHHHCCHHHH
T ss_pred HHHhhhhcccCCcccccccCCChhHHHH---------------HHHHHHHhC--C-CCCC-CCCCCHHHHHHHcCCHHHH
Confidence 3447778899999999986 277777773 2 3333 4899999999999999999
Q ss_pred HHHHhcCCcccccccCCCChHHHHHHHh
Q 040751 317 DAIISKNPECYELVDNRGWNFLHYAVVT 344 (405)
Q Consensus 317 ~~Ll~~~~~~~~~~~~~g~t~l~~a~~~ 344 (405)
++|+++|+++ +.+|..|+||||+|+.+
T Consensus 300 ~~Ll~~Gad~-~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 300 DALLDYGADP-FIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHHHHTTCCT-TCCCTTSCCGGGGTCC-
T ss_pred HHHHHcCCCC-cccCCCCCCHHHHHHhc
Confidence 9999999997 77788888888877654
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.1e-33 Score=240.24 Aligned_cols=200 Identities=25% Similarity=0.270 Sum_probs=176.2
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCC
Q 040751 101 KGDTPLHVAAKFGHSGIVTFLVER-AKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDY 179 (405)
Q Consensus 101 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~ 179 (405)
.|.||||+|+..|+.+++++|++. |+++ +..+..|.||||+|+..|+.+++++|++.|+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 63 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV------------------HQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc------------------ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchh
Confidence 589999999999999999999998 8774 478999999999999999999999999999886
Q ss_pred c----cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC-------------CCCcHHHHHHhcCCccHHHHHHHH
Q 040751 180 R----YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGP-------------NGKTALHAAAMKFDLVDTALRKLL 242 (405)
Q Consensus 180 ~----~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~-------------~~~t~L~~a~~~~~~~~~~v~~Ll 242 (405)
. ...+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..++. +++++|+
T Consensus 64 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll 141 (232)
T 2rfa_A 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE--EIVRLLI 141 (232)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH--HHHHHHH
T ss_pred ccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCH--HHHHHHH
Confidence 3 24567899999999999999999999999999988765 799999999999999 9999999
Q ss_pred HhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccc----cccccCCccHHHHHHhcCCHHHHHH
Q 040751 243 EKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASN----IADKDRKMTALHLAAGQGNAEIVDA 318 (405)
Q Consensus 243 ~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~----~~~~~~g~t~l~~A~~~~~~~~v~~ 318 (405)
+.+.+ ++.+|..|.||||+|+..++.++.. .++++|++.+.+... ...+..|.||||+|+..|+.+++++
T Consensus 142 ~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~-----~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~ 215 (232)
T 2rfa_A 142 EHGAD-IRAQDSLGNTVLHILILQPNKTFAC-----QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQH 215 (232)
T ss_dssp HTTCC-TTCCCTTSCCHHHHHHTCSCHHHHH-----HHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HCCCC-CCCCCCCCCCHHHHHHHcCChHHHH-----HHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHH
Confidence 98766 7889999999999999998665433 355999999987631 2334589999999999999999999
Q ss_pred HHhcCCcc
Q 040751 319 IISKNPEC 326 (405)
Q Consensus 319 Ll~~~~~~ 326 (405)
|+++|+..
T Consensus 216 Ll~~g~~~ 223 (232)
T 2rfa_A 216 LMQKRKHI 223 (232)
T ss_dssp HHHHHHHC
T ss_pred HHhcCccc
Confidence 99998765
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=2.2e-35 Score=251.44 Aligned_cols=165 Identities=25% Similarity=0.229 Sum_probs=98.1
Q ss_pred hhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhh
Q 040751 59 TAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG 138 (405)
Q Consensus 59 ~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 138 (405)
.+.+|.||||+| +..|+.+++++|++.....+..++..+..|.||||+|+..|+.++|++|+++|++++
T Consensus 4 ~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------- 72 (236)
T 1ikn_D 4 LTEDGDSFLHLA--IIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE--------- 72 (236)
T ss_dssp ---CCCCTTHHH--HHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC---------
T ss_pred CCCCCCchhHHH--HHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence 345566666666 666666666666554333334556666666666666666666666666666666543
Q ss_pred hhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751 139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDY-----RYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213 (405)
Q Consensus 139 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~ 213 (405)
..+..|.||||+|+..|+.+++++|++.|.+. ....+..|.||||+|+..|+.+++++|+++|+++
T Consensus 73 ---------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 143 (236)
T 1ikn_D 73 ---------LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143 (236)
T ss_dssp ---------CCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT
T ss_pred ---------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 55666666666666666666666666666431 1244556666666666666666666666666666
Q ss_pred cccCC-CCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751 214 SHEGP-NGKTALHAAAMKFDLVDTALRKLLEKK 245 (405)
Q Consensus 214 ~~~~~-~~~t~L~~a~~~~~~~~~~v~~Ll~~~ 245 (405)
+.++. .|.||||+|+..++. +++++|++.+
T Consensus 144 ~~~~~~~g~tpL~~A~~~~~~--~~v~~Ll~~g 174 (236)
T 1ikn_D 144 NAQEPCNGRTALHLAVDLQNP--DLVSLLLKCG 174 (236)
T ss_dssp TCCCTTTCCCHHHHHHHTTCH--HHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcC
Confidence 66554 566666666665555 5555555443
No 44
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.4e-34 Score=229.17 Aligned_cols=161 Identities=24% Similarity=0.379 Sum_probs=134.9
Q ss_pred CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751 30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA 109 (405)
Q Consensus 30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A 109 (405)
+.++|+.||+.|++++|+.|++.|++++..+..|+||||+| +..++.+++++|++ .+.+++..|..|+||||+|
T Consensus 4 lg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a--~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A 77 (169)
T 4gpm_A 4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHA--AENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHA 77 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH--HHcCCHHHHHHHHh----cccchhhhccCCCCHHHHH
Confidence 44578999999999999999999988888888899999999 88888888888876 4677888888899999999
Q ss_pred HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCc
Q 040751 110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKT 189 (405)
Q Consensus 110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 189 (405)
+..|+.++|++|+++|++++ .+|.+|.||||+|+..|+.+++++|+++|++++ ..+..|.|
T Consensus 78 ~~~g~~~~v~~Ll~~gadvn------------------~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~T 138 (169)
T 4gpm_A 78 AENGHKEVVKLLISKGADVN------------------AKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRT 138 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred HHcCCHHHHHHHHHCcCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCC
Confidence 99999999999999988854 788889999999999999999999999998887 77888999
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCcc
Q 040751 190 PLYMAAESRSSDMVLALLENSTSVSH 215 (405)
Q Consensus 190 ~L~~a~~~~~~~~v~~Ll~~g~~~~~ 215 (405)
|||+|+..|+.+++++|+++|++++.
T Consensus 139 pL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 139 PLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHTC------
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 99999999999999999999988764
No 45
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.7e-33 Score=236.40 Aligned_cols=204 Identities=22% Similarity=0.275 Sum_probs=173.9
Q ss_pred CCchHhHHHHhCCCHHHHHHHHhc-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-----cccCCCCCcHHH
Q 040751 152 EKNTALHEAVCHKNVDVVKILTKE-DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV-----SHEGPNGKTALH 225 (405)
Q Consensus 152 ~g~t~L~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~-----~~~~~~~~t~L~ 225 (405)
.|.||||+|+..|+.+++++|++. |.+++ ..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999998 88887 78999999999999999999999999999887 667788999999
Q ss_pred HHHhcCCccHHHHHHHHHhhhhhhhhccc-------------CCCCHHHHHHHcChhhhhhhccccchhHHHHhhccccc
Q 040751 226 AAAMKFDLVDTALRKLLEKKENLIKETDQ-------------YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSAS 292 (405)
Q Consensus 226 ~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~ 292 (405)
+|+..++. +++++|++.+.+ ++..+. .|.||||+|+..| +.+++++|++++.++
T Consensus 81 ~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~ga~~- 147 (232)
T 2rfa_A 81 IAVINQNV--NLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVG---------SEEIVRLLIEHGADI- 147 (232)
T ss_dssp HHHHTTCH--HHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHT---------CHHHHHHHHHTTCCT-
T ss_pred HHHHcCCH--HHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC-
Confidence 99999999 999999998765 455544 7999999999998 557999999999877
Q ss_pred ccccccCCccHHHHHHhcCCHHHH----HHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCc
Q 040751 293 NIADKDRKMTALHLAAGQGNAEIV----DAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRN 368 (405)
Q Consensus 293 ~~~~~~~g~t~l~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~ 368 (405)
+..+ ..|.||||+|+..++.+++ ++|+++|++... ....+.+|..|.||||+|++.|+.
T Consensus 148 ~~~d-~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~----------------~~~~~~~~~~g~tpl~~A~~~g~~ 210 (232)
T 2rfa_A 148 RAQD-SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHL----------------KSLELVPNNQGLTPFKLAGVEGNI 210 (232)
T ss_dssp TCCC-TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSS----------------CCGGGCCCTTSCCHHHHHHHHTCH
T ss_pred CCCC-CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhh----------------hhhhccCCCCCCCHHHHHHHcCCH
Confidence 4333 4899999999999999988 999999986510 011367788999999999999999
Q ss_pred HHHHHHHhccccccccccC
Q 040751 369 EFYDVMIRNTQVNYDAVNK 387 (405)
Q Consensus 369 ~~v~~Ll~~~g~d~~~~~~ 387 (405)
+++++|+++ |.++.....
T Consensus 211 ~~v~~Ll~~-g~~~~~~~~ 228 (232)
T 2rfa_A 211 VMFQHLMQK-RKHIAAAHH 228 (232)
T ss_dssp HHHHHHHHH-HHHC-----
T ss_pred HHHHHHHhc-Cccchhhhc
Confidence 999999998 777665443
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=2.7e-33 Score=243.83 Aligned_cols=223 Identities=21% Similarity=0.263 Sum_probs=175.3
Q ss_pred HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccc----cccCCCChHHHHHHHh---CcHHHHHHHHHccC
Q 040751 54 IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLL----QVNAKGDTPLHVAAKF---GHSGIVTFLVERAK 126 (405)
Q Consensus 54 ~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~ 126 (405)
......+..|.||||+| +..|+.++++.|++.....+..++ ..+..|.||||+|+.. |+.++|++|+++|+
T Consensus 4 a~~~~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga 81 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDA--VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR 81 (273)
T ss_dssp -------CCCHHHHHHH--HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred ccCCCCCcccchHHHHH--HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence 33446677799999999 999999999998886655555554 3578999999999987 99999999999987
Q ss_pred CCCCchhHHhhhhhHHHHHhhh----ccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCC--------------CCC
Q 040751 127 LPQHENEELESGVGAARQMIKM----TNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANN--------------DGK 188 (405)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~ 188 (405)
+.... ...++. .+..|.||||+|+..|+.+++++|+++|++++ ..+. .|.
T Consensus 82 ~~~~~-----------~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~ 149 (273)
T 2pnn_A 82 KTDSL-----------KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAANGDFFKKTKGRPGFYFGE 149 (273)
T ss_dssp HTTCH-----------HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBCSGGGSSCSSSCCCCSCB
T ss_pred cccch-----------hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccccccccccccccccccCCC
Confidence 54311 111222 56689999999999999999999999999988 5554 799
Q ss_pred cHHHHHHHcCCHHHHHHHHH---cCCCCcccCCCCCcHHHHHHhcCC---------ccHHHHHHHHHhhhhhhh------
Q 040751 189 TPLYMAAESRSSDMVLALLE---NSTSVSHEGPNGKTALHAAAMKFD---------LVDTALRKLLEKKENLIK------ 250 (405)
Q Consensus 189 t~L~~a~~~~~~~~v~~Ll~---~g~~~~~~~~~~~t~L~~a~~~~~---------~~~~~v~~Ll~~~~~~~~------ 250 (405)
||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..++ . +++++|++.+.+ ++
T Consensus 150 tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~--~~v~~Ll~~ga~-~n~~~~~~ 226 (273)
T 2pnn_A 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT--SMYNEILILGAK-LHPTLKLE 226 (273)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH--HHHHHHHHHHHH-HCTTCCGG
T ss_pred CHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH--HHHHHHHHhhhh-cccccccc
Confidence 99999999999999999999 999999999999999999999887 5 889999998876 43
Q ss_pred -hcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccH
Q 040751 251 -ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTA 303 (405)
Q Consensus 251 -~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~ 303 (405)
.++..|.||||+|+..| +.+++++|+++|+..+..... .+.+|
T Consensus 227 ~~~d~~g~TpL~~A~~~g---------~~~iv~~Ll~~ga~dp~~~~~-~~~~~ 270 (273)
T 2pnn_A 227 EITNRKGLTPLALAASSG---------KIGVLAYILQREIHEPECRHA-AAHHH 270 (273)
T ss_dssp GCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHHTC-------------
T ss_pred cccCCCCCCHHHHHHHhC---------hHHHHHHHHHCCCCCchhhhh-hhhhc
Confidence 58899999999999998 558999999999865444333 33333
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.2e-32 Score=226.93 Aligned_cols=192 Identities=20% Similarity=0.284 Sum_probs=173.4
Q ss_pred CCCchHhHHHHhCCCHHHHHHHHhcCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q 040751 151 NEKNTALHEAVCHKNVDVVKILTKEDP-DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM 229 (405)
Q Consensus 151 ~~g~t~L~~A~~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 229 (405)
..+.||||.|+..|+.+.++.|+..+. +++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 81 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVD-EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA 81 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 468899999999999999999999977 665 788899999999999999999999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHh
Q 040751 230 KFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAG 309 (405)
Q Consensus 230 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~ 309 (405)
.++. +++++|+...+..++..+..|.||||+|+..| +.+++++|++.+....+..+ ..|.||||+|+.
T Consensus 82 ~~~~--~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~g~~~~~~~~-~~g~t~L~~A~~ 149 (201)
T 3hra_A 82 QGRT--EILAYMLKHATPDLNKHNRYGGNALIPAAEKG---------HIDNVKLLLEDGREDIDFQN-DFGYTALIEAVG 149 (201)
T ss_dssp TTCH--HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT---------CHHHHHHHHHHCCCCTTCCC-TTSCCHHHHHHH
T ss_pred cCCH--HHHHHHHhccCcccccccCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCCcCCCC-CCCCCHHHHHHH
Confidence 9999 99999998777778889999999999999998 55799999999843324444 489999999999
Q ss_pred cCC-----HHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751 310 QGN-----AEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377 (405)
Q Consensus 310 ~~~-----~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~ 377 (405)
.++ .+++++|+++|++ ++.+|..|.||||+|++.|+.+++++|+++
T Consensus 150 ~~~~~~~~~~~v~~Ll~~ga~----------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 150 LREGNQLYQDIVKLLMENGAD----------------------QSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp SSCCSHHHHHHHHHHHHTTCC----------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred hccchhhHHHHHHHHHHCCCC----------------------CCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 998 9999999999987 456677889999999999999999999986
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=2.5e-33 Score=241.72 Aligned_cols=207 Identities=22% Similarity=0.231 Sum_probs=176.1
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc----ccCCCChHHHHHHHh---CcHHHHHHHHHccCCCCCchhHH
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQ----VNAKGDTPLHVAAKF---GHSGIVTFLVERAKLPQHENEEL 135 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~ 135 (405)
|+||||+| +..|+.+.++.|++.+...+..++. .+..|.||||+|+.. |+.++|++|+++|++.+......
T Consensus 2 G~t~L~~A--~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~ 79 (256)
T 2etb_A 2 DRDRLFSV--VSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV 79 (256)
T ss_dssp CHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred CccHHHHH--HHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence 88999999 9999999887777766666777887 899999999999999 99999999999987653221110
Q ss_pred hhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCC-------------CCcHHHHHHHcCCHHH
Q 040751 136 ESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANND-------------GKTPLYMAAESRSSDM 202 (405)
Q Consensus 136 ~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~L~~a~~~~~~~~ 202 (405)
... ....+..|.||||+|+..|+.+++++|+++|++++ ..+.. |.||||+|+..|+.++
T Consensus 80 ~~~-------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~ 151 (256)
T 2etb_A 80 NAQ-------CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH-LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151 (256)
T ss_dssp GCC-------CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH
T ss_pred ccc-------cccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 000 11234679999999999999999999999999988 55554 9999999999999999
Q ss_pred HHHHHH---cCCCCcccCCCCCcHHHHHHh--cCCccHH-------HHHHHHHhhhhhh-------hhcccCCCCHHHHH
Q 040751 203 VLALLE---NSTSVSHEGPNGKTALHAAAM--KFDLVDT-------ALRKLLEKKENLI-------KETDQYGWTPIHYA 263 (405)
Q Consensus 203 v~~Ll~---~g~~~~~~~~~~~t~L~~a~~--~~~~~~~-------~v~~Ll~~~~~~~-------~~~~~~~~t~l~~a 263 (405)
+++|++ +|++++.+|..|+||||+|+. .+.. + ++++|++.+.+ + +.++..|.||||+|
T Consensus 152 v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~--~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A 228 (256)
T 2etb_A 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSP--ENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLA 228 (256)
T ss_dssp HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCH--HHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCc--hhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHH
Confidence 999999 999999999999999999999 5666 7 99999998877 5 78899999999999
Q ss_pred HHcChhhhhhhccccchhHHHHhhcccc
Q 040751 264 AYHGMYWINRFYGNYGTVNLLLETDQSA 291 (405)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~Ll~~~~~~ 291 (405)
+..| +.+++++|++++...
T Consensus 229 ~~~g---------~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 229 AKEG---------KIEIFRHILQREFSG 247 (256)
T ss_dssp HHTT---------CHHHHHHHHHHHHHH
T ss_pred HHhC---------CHHHHHHHHhCCCCC
Confidence 9998 557999999988765
No 49
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.2e-32 Score=226.87 Aligned_cols=199 Identities=22% Similarity=0.251 Sum_probs=176.3
Q ss_pred cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751 99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD 178 (405)
Q Consensus 99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 178 (405)
+..+.||||.|+..|+.+.++.|++.+... ++..+..|.||||+|+..|+.+++++|+++|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 64 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQ-----------------VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCC-----------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCC-----------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 356889999999999999999999988722 457888999999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCC
Q 040751 179 YRYSANNDGKTPLYMAAESRSSDMVLALL-ENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGW 257 (405)
Q Consensus 179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 257 (405)
++ ..+..|.||||+|+..|+.+++++|+ ..+++++..+..|.||||.|+..++. +++++|++.+..+++.++..|.
T Consensus 65 ~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~~g~ 141 (201)
T 3hra_A 65 IN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI--DNVKLLLEDGREDIDFQNDFGY 141 (201)
T ss_dssp TT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCH--HHHHHHHHHCCCCTTCCCTTSC
T ss_pred CC-CCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCcCCCCCCCC
Confidence 98 78899999999999999999999999 66779999999999999999999999 9999999998666889999999
Q ss_pred CHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcC
Q 040751 258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKN 323 (405)
Q Consensus 258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 323 (405)
||||+|+..+.... +..+++++|++.|.++ +..+ ..|.||||+|+..|+.+++++|+++|
T Consensus 142 t~L~~A~~~~~~~~----~~~~~v~~Ll~~ga~~-~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 142 TALIEAVGLREGNQ----LYQDIVKLLMENGADQ-SIKD-NSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp CHHHHHHHSSCCSH----HHHHHHHHHHHTTCCT-TCCC-TTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CHHHHHHHhccchh----hHHHHHHHHHHCCCCC-CccC-CCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 99999998873100 0157999999999887 4333 48999999999999999999999876
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=7.7e-33 Score=240.99 Aligned_cols=223 Identities=19% Similarity=0.143 Sum_probs=171.2
Q ss_pred hcCCHHHHHHhhcCCCchhhhhHHHHHHHh--------hhhccccchhhHhhhhhh---hhcccHHHHHHHHHhCC----
Q 040751 28 SQMDPKFFKAAADGNVEPFKDMAREKIESL--------LTAKTRNTILHINIISKE---RENVSTEFVEEILEKCP---- 92 (405)
Q Consensus 28 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--------~~~~~g~~~L~~a~~~~~---~~~~~~~~l~~~~~~~~---- 92 (405)
..-.++||.|++.|++++|+.|++.+.+.. ..+..|+||||+| +.. |+.+++++|++.-....
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A--~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA--MLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHH--HHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHH--HHHHhcCChHHHHHHHHhhccccchhH
Confidence 334568999999999999999999876543 2367899999999 765 99999999998533211
Q ss_pred ---cccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHH
Q 040751 93 ---SLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVV 169 (405)
Q Consensus 93 ---~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~ 169 (405)
......+..|.||||+|+..|+.++|++|+++|++++..+...... .......+..|.||||+|+..|+.+++
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~----~~~~~~~~~~g~tpL~~A~~~g~~~~v 164 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFK----KTKGRPGFYFGELPLSLAACTNQLAIV 164 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGS----SCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccc----cccccccccCCCCHHHHHHHcCCHHHH
Confidence 1123356789999999999999999999999999865221100000 000001123799999999999999999
Q ss_pred HHHHh---cCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCc-------ccCCCCCcHHHHHHhc
Q 040751 170 KILTK---EDPDYRYSANNDGKTPLYMAAESRS---------SDMVLALLENSTSVS-------HEGPNGKTALHAAAMK 230 (405)
Q Consensus 170 ~~Ll~---~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~v~~Ll~~g~~~~-------~~~~~~~t~L~~a~~~ 230 (405)
++|++ .|++++ ..+..|.||||+|+..|+ .+++++|+++|++++ .+|..|.||||+|+..
T Consensus 165 ~~Ll~~~~~gad~~-~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~ 243 (273)
T 2pnn_A 165 KFLLQNSWQPADIS-ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243 (273)
T ss_dssp HHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred HHHHhcccCCCCce-eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHh
Confidence 99999 899998 789999999999999998 899999999999986 4899999999999999
Q ss_pred CCccHHHHHHHHHhhhhhhhhcccCCCCH
Q 040751 231 FDLVDTALRKLLEKKENLIKETDQYGWTP 259 (405)
Q Consensus 231 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 259 (405)
++. +++++|++.+..+.......+.+|
T Consensus 244 g~~--~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 244 GKI--GVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp TCH--HHHHHHHHHHTC------------
T ss_pred ChH--HHHHHHHHCCCCCchhhhhhhhhc
Confidence 999 999999999985555555555544
No 51
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=1.6e-32 Score=236.71 Aligned_cols=194 Identities=20% Similarity=0.183 Sum_probs=168.4
Q ss_pred HHHHHHhhcCCCchhhhhHH----HHHHHhh----hhccccchhhHhhhhhh---hhcccHHHHHHHHHhCCcc------
Q 040751 32 PKFFKAAADGNVEPFKDMAR----EKIESLL----TAKTRNTILHINIISKE---RENVSTEFVEEILEKCPSL------ 94 (405)
Q Consensus 32 ~~l~~A~~~g~~~~v~~ll~----~~~~~~~----~~~~g~~~L~~a~~~~~---~~~~~~~~l~~~~~~~~~~------ 94 (405)
++||.|++.|+.+.|+.+++ .|.+.+. .+..|.||||+| +.. |+.+++++|++.-......
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA--VLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH--HHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH--HHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 58999999999997765554 6776666 788899999999 988 9999999999853322110
Q ss_pred -cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCC-------------CchHhHHH
Q 040751 95 -LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNE-------------KNTALHEA 160 (405)
Q Consensus 95 -~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------g~t~L~~A 160 (405)
....|..|.||||+|+..|+.++|++|+++|++++ ..+.. |.||||+|
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~~~~~~~~~~~~~~g~tpL~~A 143 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH------------------LRACGRFFQKHQGTCFYFGELPLSLA 143 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCCSGGGSCCSSSCCCSCSSHHHHH
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------cccccccccccccccccCCCCHHHHH
Confidence 11345779999999999999999999999999865 44443 99999999
Q ss_pred HhCCCHHHHHHHHh---cCCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------cccCCCCC
Q 040751 161 VCHKNVDVVKILTK---EDPDYRYSANNDGKTPLYMAAE--SRSSD-------MVLALLENSTSV-------SHEGPNGK 221 (405)
Q Consensus 161 ~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~a~~--~~~~~-------~v~~Ll~~g~~~-------~~~~~~~~ 221 (405)
+..|+.+++++|++ .|++++ ..+..|.||||+|+. .++.+ ++++|+++|+++ +.+|..|.
T Consensus 144 ~~~~~~~~v~~Ll~~~~~ga~~n-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~ 222 (256)
T 2etb_A 144 ACTKQWDVVTYLLENPHQPASLE-ATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGL 222 (256)
T ss_dssp HHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSC
T ss_pred HHcCCHHHHHHHHhccccCCCcC-ccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCC
Confidence 99999999999999 999998 789999999999999 78888 999999999999 89999999
Q ss_pred cHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751 222 TALHAAAMKFDLVDTALRKLLEKKENL 248 (405)
Q Consensus 222 t~L~~a~~~~~~~~~~v~~Ll~~~~~~ 248 (405)
||||+|+..|+. +++++|++.+...
T Consensus 223 tpL~~A~~~g~~--~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 223 TPLKLAAKEGKI--EIFRHILQREFSG 247 (256)
T ss_dssp CHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHhCCH--HHHHHHHhCCCCC
Confidence 999999999999 9999999988764
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.98 E-value=1.9e-31 Score=213.24 Aligned_cols=158 Identities=29% Similarity=0.397 Sum_probs=145.3
Q ss_pred hHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcccc
Q 040751 104 TPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSA 183 (405)
Q Consensus 104 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~ 183 (405)
++|+.|++.|+.++|++|+++|++++ .+|..|.||||+|+..++.+++++|++.|++++ ..
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn------------------~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~ 66 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVN------------------ASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AK 66 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCC------------------CcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hh
Confidence 57999999999999999999999854 889999999999999999999999999999998 78
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHH
Q 040751 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYA 263 (405)
Q Consensus 184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a 263 (405)
+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+. +++++|++.+.+ ++.++..|.|||++|
T Consensus 67 d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~--~~v~~Ll~~gad-~~~~d~~G~TpL~~A 143 (169)
T 4gpm_A 67 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHK--EVVKLLISKGAD-VNTSDSDGRTPLDLA 143 (169)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-ccccCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 999999998876 788999999999999
Q ss_pred HHcChhhhhhhccccchhHHHHhhccccc
Q 040751 264 AYHGMYWINRFYGNYGTVNLLLETDQSAS 292 (405)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~ 292 (405)
+..| +.+++++|+++|+++.
T Consensus 144 ~~~g---------~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 144 REHG---------NEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHTT---------CHHHHHHHHTC-----
T ss_pred HHcC---------CHHHHHHHHHCCCCcC
Confidence 9998 5579999999998773
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=4.7e-32 Score=234.31 Aligned_cols=194 Identities=21% Similarity=0.232 Sum_probs=169.3
Q ss_pred HHHHHHhhcCCCchhhhhHH----HHHHHhhhh----ccccchhhHhhhh---hhhhcccHHHHHHHHHhCC-------c
Q 040751 32 PKFFKAAADGNVEPFKDMAR----EKIESLLTA----KTRNTILHINIIS---KERENVSTEFVEEILEKCP-------S 93 (405)
Q Consensus 32 ~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~~~L~~a~~~---~~~~~~~~~~l~~~~~~~~-------~ 93 (405)
++||.|++.|+.+.|+.|++ .|.+.+..+ ..|.||||+| + ..|+.+++++|++.-.... .
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 84 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKA--LLNLSAGRNDTIPILLDIAEKTGNMREFINS 84 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHH--HTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHH--HHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence 57999999999998888887 665555333 6699999999 6 7899999999998533321 2
Q ss_pred ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhcc--------------CCCchHhHH
Q 040751 94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN--------------NEKNTALHE 159 (405)
Q Consensus 94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~g~t~L~~ 159 (405)
.+...|..|.||||+|+..|+.++|++|+++|++++ ..+ ..|.||||+
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~------------------~~~~~~~~~~~~~~~~~~~g~tpL~~ 146 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH------------------AQARGRFFQPKDEGGYFYFGELPLSL 146 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCEECCCSSSCCCCSCCSCSSHHHH
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC------------------ccccccccCcccccccccCCCCHHHH
Confidence 345556689999999999999999999999999865 444 579999999
Q ss_pred HHhCCCHHHHHHHHh---cCCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------cccCCCC
Q 040751 160 AVCHKNVDVVKILTK---EDPDYRYSANNDGKTPLYMAAESRS---------SDMVLALLENSTSV-------SHEGPNG 220 (405)
Q Consensus 160 A~~~~~~~~~~~Ll~---~~~~~~~~~~~~g~t~L~~a~~~~~---------~~~v~~Ll~~g~~~-------~~~~~~~ 220 (405)
|+..|+.+++++|++ .|++++ ..+..|.||||+|+..++ .+++++|+++|+++ +..+..|
T Consensus 147 A~~~g~~~~v~~Ll~~~~~ga~~~-~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g 225 (260)
T 3jxi_A 147 AACTNQPHIVHYLTENGHKQADLR-RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG 225 (260)
T ss_dssp HHHTTCHHHHHHHHHCSSCCCCTT-CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred HHHcCCHHHHHHHHhccccCCCCc-ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC
Confidence 999999999999999 899998 789999999999999887 79999999999998 6799999
Q ss_pred CcHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751 221 KTALHAAAMKFDLVDTALRKLLEKKENL 248 (405)
Q Consensus 221 ~t~L~~a~~~~~~~~~~v~~Ll~~~~~~ 248 (405)
.||||+|+..|+. +++++|++++...
T Consensus 226 ~tpL~~A~~~g~~--~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 226 LSPLMMAAKTGKI--GIFQHIIRREIAD 251 (260)
T ss_dssp CCHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCH--HHHHHHHHhCCCc
Confidence 9999999999999 9999999998764
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.98 E-value=4.9e-32 Score=234.20 Aligned_cols=209 Identities=21% Similarity=0.224 Sum_probs=176.9
Q ss_pred ccccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc----CCCChHHHHHH---HhCcHHHHHHHHHccCCCCCchh
Q 040751 61 KTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN----AKGDTPLHVAA---KFGHSGIVTFLVERAKLPQHENE 133 (405)
Q Consensus 61 ~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~~~ 133 (405)
..++++||.| +..|+.+.++.|++.+...+..++..+ ..|.||||+|+ ..|+.++|++|+++|+++.....
T Consensus 3 ~~~~~~L~~A--~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 3 VFNRPILFDI--VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCHHHHHHH--HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHH--HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 4588999999 999999998888887666666676555 67999999999 67999999999999865431111
Q ss_pred HHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC--------------CCCCcHHHHHHHcCC
Q 040751 134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN--------------NDGKTPLYMAAESRS 199 (405)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~L~~a~~~~~ 199 (405)
.. ...++..+..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.||||+|+..|+
T Consensus 81 ~~-------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~ 152 (260)
T 3jxi_A 81 FI-------NSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152 (260)
T ss_dssp HH-------TCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC
T ss_pred hh-------cccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccccccccCcccccccccCCCCHHHHHHHcCC
Confidence 00 00123345589999999999999999999999999998 555 589999999999999
Q ss_pred HHHHHHHHH---cCCCCcccCCCCCcHHHHHHhcCC---------ccHHHHHHHHHhhhhhh-------hhcccCCCCHH
Q 040751 200 SDMVLALLE---NSTSVSHEGPNGKTALHAAAMKFD---------LVDTALRKLLEKKENLI-------KETDQYGWTPI 260 (405)
Q Consensus 200 ~~~v~~Ll~---~g~~~~~~~~~~~t~L~~a~~~~~---------~~~~~v~~Ll~~~~~~~-------~~~~~~~~t~l 260 (405)
.+++++|++ +|++++.+|..|.||||+|+..++ . +++++|++.+.+ + +.++..|.|||
T Consensus 153 ~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~--~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL 229 (260)
T 3jxi_A 153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT--KMYDLLLIKCAK-LFPDTNLEALLNNDGLSPL 229 (260)
T ss_dssp HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHH--HHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHH
T ss_pred HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHH--HHHHHHHHhCcc-cccccchhhcccCCCCCHH
Confidence 999999999 999999999999999999998877 5 899999998876 4 67899999999
Q ss_pred HHHHHcChhhhhhhccccchhHHHHhhcccc
Q 040751 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSA 291 (405)
Q Consensus 261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~ 291 (405)
|+|+..| +.+++++|++++...
T Consensus 230 ~~A~~~g---------~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 230 MMAAKTG---------KIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHTT---------CHHHHHHHHHHHHHH
T ss_pred HHHHHcC---------CHHHHHHHHHhCCCc
Confidence 9999998 558999999998766
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=1.7e-33 Score=253.18 Aligned_cols=291 Identities=11% Similarity=0.058 Sum_probs=194.5
Q ss_pred HHHHHhh-cCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751 33 KFFKAAA-DGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK 111 (405)
Q Consensus 33 ~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~ 111 (405)
.++.|.. .++.+.++++++.|.+ +.||||+| +..|+.+++++|++... ........+..|.||||+|+.
T Consensus 68 ~~~~a~~~~~~~~~~~~l~~~g~~-------~~T~Lh~A--a~~G~~e~v~~Ll~~ga-~~~~~~~~~~~~~tpL~~Aa~ 137 (376)
T 2aja_A 68 CLYYAHYNRNAKQLWSDAHKKGIK-------SEVICFVA--AITGCSSALDTLCLLLT-SDEIVKVIQAENYQAFRLAAE 137 (376)
T ss_dssp HHHHHHTTTTCTTHHHHHHHHTCC-------HHHHHHHH--HHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHcCCC-------cCCHHHHH--HHcCCHHHHHHHHHcCC-cHHHHHHhccCCCCHHHHHHH
Confidence 4555655 5778888888877653 66999999 99999999999977211 111223455668899999999
Q ss_pred hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc-ccCCCCCcH
Q 040751 112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY-SANNDGKTP 190 (405)
Q Consensus 112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~-~~~~~g~t~ 190 (405)
.|+.++|++|+++|++... .+..+.+ .||||+|+..|+.+++++|+++|++++. ..+..|.||
T Consensus 138 ~G~~eiv~~Ll~~gad~~~---------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp 201 (376)
T 2aja_A 138 NGHLHVLNRLCELAPTEIM---------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 201 (376)
T ss_dssp TTCHHHHHHHHHSCTTTHH---------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCccc---------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence 9999999999999975310 0111222 8999999999999999999999998762 167788999
Q ss_pred HHHHH-HcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChh
Q 040751 191 LYMAA-ESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMY 269 (405)
Q Consensus 191 L~~a~-~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~ 269 (405)
||+|+ ..|+.++|++|+++|++ +.|||+.|+..|+. +++++|++.+.. ++..+ ++++.|+..|+.
T Consensus 202 L~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~--evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~ 267 (376)
T 2aja_A 202 FRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEK--YVNPFIARHVNR-LKEMH----DAFKLSNPDGVF 267 (376)
T ss_dssp HHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTT--THHHHHHHHHHH-HHHHH----TTTTTTSSSSCC
T ss_pred HHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCH--HHHHHHHhcCcc-ccccc----HHHHHHHHCCCh
Confidence 99999 99999999999997742 78999999999999 999999988765 44433 366677777744
Q ss_pred hhhhhcc---ccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhcc
Q 040751 270 WINRFYG---NYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRS 346 (405)
Q Consensus 270 ~~~~~l~---~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~ 346 (405)
++..... ...+++.|+..+ ..+..+.+++|++.+... ..-..|.
T Consensus 268 ~vv~~~~~~~~~~~~~~li~~~--------------------~~~~~~~~~~Ll~~~~vk--~l~~~g~----------- 314 (376)
T 2aja_A 268 DLVTKSECLQGFYMLRNLIRRN--------------------DEVLLDDIRFLLSIPGIK--ALAPTAT----------- 314 (376)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHC--------------------CGGGHHHHHHHHTSTTTG--GGSSCCS-----------
T ss_pred hhhcHHhhhhhHHHHHHHHHcc--------------------hhhHHHHHHHHHhChhhh--hhhccCC-----------
Confidence 3221000 000222333322 112366777777654321 1111111
Q ss_pred ccccccCCCCCHHHHHHHhCCcHHHHHHHhccccccccccCCCCchhhhhhcccccCC
Q 040751 347 LINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVNYDAVNKQNVSVEHILDYEHILDF 404 (405)
Q Consensus 347 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d~~~~~~~g~t~l~~a~~~~~~~~ 404 (405)
....+.||||+|++.|+.+++++|++. | ..++..|+|++++|...+.+|+
T Consensus 315 ----~~n~~~~~L~~A~~~g~~e~v~lLl~~-~---~v~~~~~~~~~~~~~~~~~~~~ 364 (376)
T 2aja_A 315 ----IPGDANELLRLALRLGNQGACALLLSI-P---SVLALTKANNYYINETGGRLDL 364 (376)
T ss_dssp ----STTCCCHHHHHHHHHTCTTHHHHHTTS-H---HHHHSCC---------------
T ss_pred ----CCCCccHHHHHHHHcCcHHHHHHHHcC-h---HHHHHHHHhccccccccccccH
Confidence 123567899999999999999999986 3 6788999999999999998875
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=226.22 Aligned_cols=191 Identities=20% Similarity=0.174 Sum_probs=156.0
Q ss_pred hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccC-CCCCchhHHhhh
Q 040751 60 AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAK-LPQHENEELESG 138 (405)
Q Consensus 60 ~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~ 138 (405)
...+.+++|.| +..++.+.++.++.... ...++..|..|.||||+|+..|+.++|++|+++|+ +
T Consensus 73 ~~~~~~~l~~a--~~~~~~~~~~~l~~~~~--~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~----------- 137 (276)
T 4hbd_A 73 RLACRSDAHPE--LVRRHLVTFRAMSARLL--DYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCK----------- 137 (276)
T ss_dssp HHHHSTTCCHH--HHHHHHHHHHHHCHHHH--HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCC-----------
T ss_pred HHHhccCCCHH--HHHHHHHHHHHHHHHHH--hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCc-----------
Confidence 33477888888 88888888888766432 22367788888999999999999999999999887 5
Q ss_pred hhHHHHHhhhccCCCchHhHHHH-----hCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751 139 VGAARQMIKMTNNEKNTALHEAV-----CHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213 (405)
Q Consensus 139 ~~~~~~~~~~~~~~g~t~L~~A~-----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~ 213 (405)
++..+..|.||||+|+ ..++.+++++|++.|...+ ..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 138 -------~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~ 209 (276)
T 4hbd_A 138 -------VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSHGRVDVVKALLACEADV 209 (276)
T ss_dssp -------TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred -------CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 4477888889999888 5577888888888887766 67778889999999999999999999999988
Q ss_pred cccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhc
Q 040751 214 SHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFY 275 (405)
Q Consensus 214 ~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l 275 (405)
+.+|..|.||||+|+..++. +++++|+...+.+++.++..|.|||++|+..|+.++.+++
T Consensus 210 n~~d~~G~TpLh~A~~~g~~--~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L 269 (276)
T 4hbd_A 210 NVQDDDGSTALMCACEHGHK--EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269 (276)
T ss_dssp TCCCTTSCCHHHHHHHHTCH--HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCH--HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 88888899999999988888 8888888844444788888889999999988888887765
No 57
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.8e-29 Score=203.76 Aligned_cols=170 Identities=23% Similarity=0.241 Sum_probs=147.2
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 142 (405)
+.+|||+| +..|+.+++++|++ ..+..++..+..|.||||+|+..|+.++|++|+++|++++
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------- 63 (172)
T 3v30_A 2 DSLSIHQL--AAQGELDQLKEHLR---KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH------------- 63 (172)
T ss_dssp --CCHHHH--HHTTCHHHHHHHHT---TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-------------
T ss_pred chhhHHHH--HHcCCHHHHHHHHH---cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-------------
Confidence 56899999 99999999988866 4555578889999999999999999999999999998854
Q ss_pred HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT 222 (405)
Q Consensus 143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 222 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 64 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 137 (172)
T 3v30_A 64 -----ILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT 137 (172)
T ss_dssp -----CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred -----hhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 788899999999999999999999999999988 78899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCH
Q 040751 223 ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTP 259 (405)
Q Consensus 223 ~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~ 259 (405)
||++|+..++. +++++|++.+.. ....+..+.||
T Consensus 138 ~l~~A~~~~~~--~~~~~L~~~~~~-~~~~~~~~~~p 171 (172)
T 3v30_A 138 PMDLAVALGYR--KVQQVIENHILK-LFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHTCH--HHHHHHHHHHHH-HSCC-------
T ss_pred HHHHHHHhCcH--HHHHHHHHHHHH-HhcccCCCCCC
Confidence 99999999999 999999998876 45556666665
No 58
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=3.3e-29 Score=206.06 Aligned_cols=162 Identities=20% Similarity=0.167 Sum_probs=148.2
Q ss_pred hhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHh
Q 040751 57 LLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136 (405)
Q Consensus 57 ~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 136 (405)
+..+..|+||||+| +..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 29 n~~d~~g~t~L~~A--~~~g~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------- 95 (192)
T 2rfm_A 29 NYRDSYNRTPLMVA--CMLGMENAIDKLVEN----FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN------- 95 (192)
T ss_dssp TCCCTTCCCHHHHH--HHHTCGGGHHHHHHH----HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-------
T ss_pred hCcCCCCCCHHHHH--HHcCCHHHHHHHHHh----ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-------
Confidence 36777899999999 999999999999884 45677888899999999999999999999999998854
Q ss_pred hhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216 (405)
Q Consensus 137 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~ 216 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 96 -----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 163 (192)
T 2rfm_A 96 -----------TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYGRSEIVKKLLELGADISAR 163 (192)
T ss_dssp -----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred -----------CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 788899999999999999999999999999988 78889999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751 217 GPNGKTALHAAAMKFDLVDTALRKLLEKK 245 (405)
Q Consensus 217 ~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~ 245 (405)
+..|.|||++|+..++. +++++|++.+
T Consensus 164 ~~~g~t~l~~A~~~~~~--~~v~~Ll~~~ 190 (192)
T 2rfm_A 164 DLTGLTAEASARIFGRQ--EVIKIFTEVR 190 (192)
T ss_dssp CTTSCBHHHHHHHTTCH--HHHHHHHHHH
T ss_pred CCCCCCHHHHHHHhCcH--HHHHHHHhcc
Confidence 99999999999999999 9999998765
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.8e-29 Score=206.48 Aligned_cols=163 Identities=26% Similarity=0.263 Sum_probs=151.6
Q ss_pred cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751 95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK 174 (405)
Q Consensus 95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 174 (405)
++..|..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 89 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL------------------EDKDIEGSTALIWAVKNNRLGIAEKLLS 89 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc------------------ccccccCccHHHHHHHcCCHHHHHHHHH
Confidence 5678999999999999999999999999999875 4788899999999999999999999999
Q ss_pred cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc
Q 040751 175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ 254 (405)
Q Consensus 175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~ 254 (405)
.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.+ ++.++.
T Consensus 90 ~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~ 165 (192)
T 2rfm_A 90 KGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRS--EIVKKLLELGAD-ISARDL 165 (192)
T ss_dssp HTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH--HHHHHHHHTTCC-TTCBCT
T ss_pred CCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHCCCC-CCCcCC
Confidence 999988 7888999999999999999999999999999999999999999999999999 999999998766 788999
Q ss_pred CCCCHHHHHHHcChhhhhhhccccchhHHHHhhc
Q 040751 255 YGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETD 288 (405)
Q Consensus 255 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~ 288 (405)
.|.||+++|+..| +.+++++|++.+
T Consensus 166 ~g~t~l~~A~~~~---------~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 166 TGLTAEASARIFG---------RQEVIKIFTEVR 190 (192)
T ss_dssp TSCBHHHHHHHTT---------CHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---------cHHHHHHHHhcc
Confidence 9999999999998 557888888765
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=7.8e-30 Score=221.77 Aligned_cols=188 Identities=22% Similarity=0.222 Sum_probs=173.2
Q ss_pred HHHHHHhhcCCCchhhhhHHHHHH--HhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751 32 PKFFKAAADGNVEPFKDMAREKIE--SLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA 109 (405)
Q Consensus 32 ~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A 109 (405)
.++|.|+..|+++.++.+++.+.+ .+..+..|.||||+| +..|+.+++++|++ .....++..+..|.||||+|
T Consensus 78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A--~~~g~~~~v~~Ll~---~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYS--VSHANFPVVQQLLD---SGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHH--HHTTCHHHHHHHHH---TSCCCTTCCCTTSCCHHHHG
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHH--HHCCCHHHHHHHHH---CCCCcCCCCCCCCCCHHHHH
Confidence 457888999999999999999877 558888999999999 99999999999987 23338889999999999999
Q ss_pred H-----HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccC
Q 040751 110 A-----KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSAN 184 (405)
Q Consensus 110 ~-----~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~ 184 (405)
+ ..++.+++++|++.|.... ..+..|.||||+|+..|+.+++++|++.|++++ ..+
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d 213 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINA------------------KASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQD 213 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTC------------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCcc------------------ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCC
Confidence 9 7789999999999998754 678889999999999999999999999999998 789
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751 185 NDGKTPLYMAAESRSSDMVLALLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKK 245 (405)
Q Consensus 185 ~~g~t~L~~a~~~~~~~~v~~Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~ 245 (405)
..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+. +++++|++..
T Consensus 214 ~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~~ 273 (276)
T 4hbd_A 214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS--EIASMLYSRM 273 (276)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH--HHHHHHHHHC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH--HHHHHHHhcc
Confidence 999999999999999999999999 8999999999999999999999999 9999999865
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=5.2e-29 Score=200.08 Aligned_cols=160 Identities=23% Similarity=0.249 Sum_probs=148.2
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 141 (405)
.|.||||+| +..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~t~L~~A--~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 63 (167)
T 3v31_A 2 ANSLSVHQL--AAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ------------ 63 (167)
T ss_dssp TTCCCHHHH--HHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred CCcchHHHH--HHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence 488999999 999999999999873 56688899999999999999999999999999998854
Q ss_pred HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221 (405)
Q Consensus 142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 221 (405)
..+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 64 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 136 (167)
T 3v31_A 64 ------LLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY 136 (167)
T ss_dssp ------CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ------CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 778899999999999999999999999999988 7889999999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCccHHHHHHHHHhhhhh
Q 040751 222 TALHAAAMKFDLVDTALRKLLEKKENL 248 (405)
Q Consensus 222 t~L~~a~~~~~~~~~~v~~Ll~~~~~~ 248 (405)
|||++|+..++. +++++|++.....
T Consensus 137 t~l~~A~~~~~~--~~~~~L~~~~~~~ 161 (167)
T 3v31_A 137 NSMDLAVALGYR--SVQQVIESHLLKL 161 (167)
T ss_dssp CHHHHHHHHTCH--HHHHHHHHHHHHH
T ss_pred CHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 999999999999 9999999887653
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=6.4e-30 Score=204.32 Aligned_cols=158 Identities=19% Similarity=0.156 Sum_probs=120.4
Q ss_pred CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751 30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA 109 (405)
Q Consensus 30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A 109 (405)
+.++|+.|+..|+.++|++|++.|.+.+..+..|.||||+| +. ++.+++++|++ .+.+++..+..|.||||+|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A--~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM--KL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDA 77 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHC--CS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHH--Hc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence 45678888888888888888887777777777788888887 66 77777777766 3566677777788888888
Q ss_pred HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCc
Q 040751 110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKT 189 (405)
Q Consensus 110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t 189 (405)
+..|+.+++++|+++|++++ .++..|.||||+|+..|+.+++++|+++|++.....+..|.|
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t 139 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADVN------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred HHcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence 88888888888888877643 667778888888888888888888888877743367777888
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Q 040751 190 PLYMAAESRSSDMVLALLENSTS 212 (405)
Q Consensus 190 ~L~~a~~~~~~~~v~~Ll~~g~~ 212 (405)
|||+|+..|+.+++++|+++|++
T Consensus 140 ~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 140 ACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHHHHHcCCHHHHHHHHHhCCC
Confidence 88888888888888888887764
No 63
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=6.3e-29 Score=198.55 Aligned_cols=159 Identities=21% Similarity=0.171 Sum_probs=146.5
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180 (405)
Q Consensus 101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~ 180 (405)
...||||.|+..|+.+++++|+++|.++ +..+..|.||||+|+. |+.+++++|+++|++++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~------------------~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~ 64 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNV------------------NAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD 64 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCT------------------TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCc------------------cccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC
Confidence 4569999999999999999999999885 4788899999999999 99999999999999988
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI 260 (405)
Q Consensus 181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l 260 (405)
..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+...++.++..|.|||
T Consensus 65 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~~~~~~~~~g~t~l 141 (162)
T 1ihb_A 65 -LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL--RVVEFLVKHTASNVGHRNHKGDTAC 141 (162)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred -CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHccCCCCCCcCCCCCcHH
Confidence 7889999999999999999999999999999999999999999999999999 9999999998876788999999999
Q ss_pred HHHHHcChhhhhhhccccchhHHHHhhccc
Q 040751 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQS 290 (405)
Q Consensus 261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~ 290 (405)
++|+..| +.+++++|+++|++
T Consensus 142 ~~A~~~~---------~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 142 DLARLYG---------RNEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHTT---------CHHHHHHHHHTC--
T ss_pred HHHHHcC---------CHHHHHHHHHhCCC
Confidence 9999998 55788999988764
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=8.6e-32 Score=227.11 Aligned_cols=198 Identities=20% Similarity=0.182 Sum_probs=166.2
Q ss_pred ccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHH
Q 040751 94 LLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILT 173 (405)
Q Consensus 94 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 173 (405)
..+..+..+.||||.|+..|+.++|++|+++|++++ ..+..|.||||+|+..|+.+++++|+
T Consensus 13 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~d~~g~tpLh~A~~~g~~~~v~~Ll 74 (229)
T 2vge_A 13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS------------------QPNEEGITALHNAICGANYSIVDFLI 74 (229)
T ss_dssp CCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 344566678899999999999999999999998854 78889999999999999999999999
Q ss_pred hcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHH--HhcCCccHHHHHHHHHhhhhhhh
Q 040751 174 KEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG-PNGKTALHAA--AMKFDLVDTALRKLLEKKENLIK 250 (405)
Q Consensus 174 ~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a--~~~~~~~~~~v~~Ll~~~~~~~~ 250 (405)
+.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..++. +++++|++.+.+ ++
T Consensus 75 ~~ga~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~--~~v~~Ll~~ga~-~~ 150 (229)
T 2vge_A 75 TAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA--DCATYLADVEQS-MG 150 (229)
T ss_dssp HTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH--HHHHHHHHHHHH-TT
T ss_pred HCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH--HHHHHHHHcCCC-cc
Confidence 9999988 788899999999999999999999999999999886 6899999999 888888 999999998876 77
Q ss_pred hcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHH-HHhcCCc
Q 040751 251 ETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDA-IISKNPE 325 (405)
Q Consensus 251 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~-Ll~~~~~ 325 (405)
..+..+.|+++.++... ..++|++.+.+......+..|+||||+|+..|+.++|+. +++..+.
T Consensus 151 ~~~~~~~~~l~~~~~~~------------~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~ 214 (229)
T 2vge_A 151 LMNSGAVYALWDYSAEF------------GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214 (229)
T ss_dssp TSGGGEEEESSCBCCSS------------TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCC
T ss_pred cccCCchHHHHHHhhcc------------ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCC
Confidence 78888888887655443 456777888775444455589999999999999888875 3444443
No 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.4e-29 Score=204.49 Aligned_cols=167 Identities=19% Similarity=0.145 Sum_probs=149.0
Q ss_pred HHHHHHhhcCCCchhhhhHHHHHH-HhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751 32 PKFFKAAADGNVEPFKDMAREKIE-SLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA 110 (405)
Q Consensus 32 ~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~ 110 (405)
.|||.|+..|+++.|++|++.+.+ .+..+..|.||||+| +..|+.+++++|++. +..++..+..|.||||+|+
T Consensus 4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~ 77 (172)
T 3v30_A 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA--SAFGEIETVRFLLEW----GADPHILAKERESALSLAS 77 (172)
T ss_dssp CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH--HHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH--HHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHHH
Confidence 469999999999999999999876 457788899999999 999999999999873 6778889999999999999
Q ss_pred HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751 111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP 190 (405)
Q Consensus 111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 190 (405)
..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||
T Consensus 78 ~~~~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~ 138 (172)
T 3v30_A 78 TGGYTDIVGLLLERDVDI------------------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT-TEADSGYTP 138 (172)
T ss_dssp HTTCHHHHHHHHTTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred HCCCHHHHHHHHHcCCCC------------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCH
Confidence 999999999999999885 4788999999999999999999999999999988 788999999
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 040751 191 LYMAAESRSSDMVLALLENSTSVSHEGPNGKTA 223 (405)
Q Consensus 191 L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~ 223 (405)
||+|+..|+.+++++|+++|+++...+..+.||
T Consensus 139 l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 139 MDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 999999999999999999999988888777776
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.2e-29 Score=201.64 Aligned_cols=155 Identities=24% Similarity=0.258 Sum_probs=108.2
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 141 (405)
.+.++|++| +..|+.+++++|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 13 ~~~~~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 74 (169)
T 2y1l_E 13 DLGKKLLEA--ARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN------------ 74 (169)
T ss_dssp CHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred cccchHHHH--HHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 356667777 66677666666665 245566666677777777777777777777777776633
Q ss_pred HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221 (405)
Q Consensus 142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 221 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 75 ------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 147 (169)
T 2y1l_E 75 ------AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGK 147 (169)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence 566667777777777777777777777777766 5666677777777777777777777777777777777777
Q ss_pred cHHHHHHhcCCccHHHHHHHHH
Q 040751 222 TALHAAAMKFDLVDTALRKLLE 243 (405)
Q Consensus 222 t~L~~a~~~~~~~~~~v~~Ll~ 243 (405)
|||+.|+..++. +++++|++
T Consensus 148 t~l~~A~~~~~~--~~~~~L~~ 167 (169)
T 2y1l_E 148 TAFDISIDNGNE--DLAEILQK 167 (169)
T ss_dssp CHHHHHHHTTCH--HHHHHHHT
T ss_pred CHHHHHHHhCCH--HHHHHHHH
Confidence 777777777776 77776664
No 67
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=2.5e-28 Score=196.35 Aligned_cols=155 Identities=23% Similarity=0.280 Sum_probs=111.3
Q ss_pred CHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHH
Q 040751 31 DPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAA 110 (405)
Q Consensus 31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~ 110 (405)
.++|+.|++.|+.++|++|++.|.+.+..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|+
T Consensus 15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA--AFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHH
Confidence 4567777777777777777777777766666777777777 77777777777766 35556666777777777777
Q ss_pred HhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcH
Q 040751 111 KFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTP 190 (405)
Q Consensus 111 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~ 190 (405)
..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||
T Consensus 89 ~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~ 149 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADVN------------------ANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTA 149 (169)
T ss_dssp HTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred HcCCHHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCH
Confidence 7777777777777776643 566677777777777777777777777777766 566777777
Q ss_pred HHHHHHcCCHHHHHHHHHcC
Q 040751 191 LYMAAESRSSDMVLALLENS 210 (405)
Q Consensus 191 L~~a~~~~~~~~v~~Ll~~g 210 (405)
|++|+..|+.+++++|+++|
T Consensus 150 l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 150 FDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHhCCHHHHHHHHHcC
Confidence 77777777777777777654
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.8e-28 Score=195.79 Aligned_cols=160 Identities=20% Similarity=0.209 Sum_probs=148.1
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180 (405)
Q Consensus 101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~ 180 (405)
.|.||||.|+..|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++.|++++
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 63 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI------------------NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc------------------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence 5789999999999999999999999874 4788999999999999999999999999999988
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPI 260 (405)
Q Consensus 181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l 260 (405)
..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.+ ++.++..|.||+
T Consensus 64 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~g~~-~~~~~~~g~t~l 139 (167)
T 3v31_A 64 -LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHV--KCVKMLLESGAD-PTIETDSGYNSM 139 (167)
T ss_dssp -CCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred -CcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CCCcCCCCCCHH
Confidence 7889999999999999999999999999999999999999999999999999 999999998766 788899999999
Q ss_pred HHHHHcChhhhhhhccccchhHHHHhhcccc
Q 040751 261 HYAAYHGMYWINRFYGNYGTVNLLLETDQSA 291 (405)
Q Consensus 261 ~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~ 291 (405)
++|+..| +.+++++|++++...
T Consensus 140 ~~A~~~~---------~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 140 DLAVALG---------YRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHHHHT---------CHHHHHHHHHHHHHH
T ss_pred HHHHHcC---------cHHHHHHHHHHHHHH
Confidence 9999998 557888888877654
No 69
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=7.2e-32 Score=242.64 Aligned_cols=260 Identities=13% Similarity=0.059 Sum_probs=176.2
Q ss_pred CHHHHHHhhcCCCchhhhhHHHHHHHh---hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcc---cccccCCCCh
Q 040751 31 DPKFFKAAADGNVEPFKDMAREKIESL---LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSL---LLQVNAKGDT 104 (405)
Q Consensus 31 ~~~l~~A~~~g~~~~v~~ll~~~~~~~---~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~g~t 104 (405)
.+|||.|++.|+.++|++|++.|.... ..+..|.||||+| +..|+.+++++|++. +.+ .+..+.. .|
T Consensus 93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A--a~~G~~eiv~~Ll~~----gad~~~~~i~~~~-~T 165 (376)
T 2aja_A 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA--AENGHLHVLNRLCEL----APTEIMAMIQAEN-YH 165 (376)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH--HHTTCHHHHHHHHHS----CTTTHHHHHSHHH-HH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH--HHcCCHHHHHHHHhC----CCCccccccCCCC-CC
Confidence 489999999999999999999987221 2334588999999 999999999999872 321 1222222 89
Q ss_pred HHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHH-hCCCHHHHHHHHhcCCCCcccc
Q 040751 105 PLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAV-CHKNVDVVKILTKEDPDYRYSA 183 (405)
Q Consensus 105 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~~~~Ll~~~~~~~~~~ 183 (405)
|||+|+..|+.++|++|+++|++++ .+..+..|.||||+|+ ..|+.+++++|++.|+
T Consensus 166 pLh~Aa~~G~~eiv~~Ll~~ga~~~----------------~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------ 223 (376)
T 2aja_A 166 AFRLAAENGHLHVLNRLCELAPTEA----------------TAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------ 223 (376)
T ss_dssp HHHHHHHTTCHHHHHHHHHSCGGGH----------------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCccc----------------hhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------
Confidence 9999999999999999999998743 1126677899999999 9999999999998663
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHH------------HHHHHhhhhhhhh
Q 040751 184 NNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTAL------------RKLLEKKENLIKE 251 (405)
Q Consensus 184 ~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v------------~~Ll~~~~~~~~~ 251 (405)
.|.|||++|+..|+.+++++|+++|++++..+ ++++.|+..|+. +++ +.|+..+.
T Consensus 224 --~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~--~vv~~~~~~~~~~~~~~li~~~~----- 290 (376)
T 2aja_A 224 --MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVF--DLVTKSECLQGFYMLRNLIRRND----- 290 (376)
T ss_dssp --HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCC--CCSSHHHHHHHHHHHHHHHHHCC-----
T ss_pred --ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCCh--hhhcHHhhhhhHHHHHHHHHcch-----
Confidence 27899999999999999999999998876654 467788888876 433 22222110
Q ss_pred cccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHHhcCCHHHHHHHHhcCCccccccc
Q 040751 252 TDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAAGQGNAEIVDAIISKNPECYELVD 331 (405)
Q Consensus 252 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~ 331 (405)
.+..+..+++.+.+.++.+...+.+. ..+.||||+|+..|+.+++++|++.+.
T Consensus 291 --------------~~~~~~~~~Ll~~~~vk~l~~~g~~~------n~~~~~L~~A~~~g~~e~v~lLl~~~~------- 343 (376)
T 2aja_A 291 --------------EVLLDDIRFLLSIPGIKALAPTATIP------GDANELLRLALRLGNQGACALLLSIPS------- 343 (376)
T ss_dssp --------------GGGHHHHHHHHTSTTTGGGSSCCSST------TCCCHHHHHHHHHTCTTHHHHHTTSHH-------
T ss_pred --------------hhHHHHHHHHHhChhhhhhhccCCCC------CCccHHHHHHHHcCcHHHHHHHHcChH-------
Confidence 11122334444445566665555544 256689999999999999999998642
Q ss_pred CCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751 332 NRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377 (405)
Q Consensus 332 ~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~ 377 (405)
.++..+.|++.+|-+.|..++.+.-+..
T Consensus 344 ------------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 344 ------------------VLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp ------------------HHHSCC----------------------
T ss_pred ------------------HHHHHHHhccccccccccccHHHHHHHH
Confidence 2345677788888888888777765543
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=7.1e-28 Score=190.39 Aligned_cols=151 Identities=19% Similarity=0.217 Sum_probs=110.2
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 142 (405)
..++||.| +..|+.+++++|++. +..++ .+..|.||||+|+..|+.+++++|+++|++++
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~Ll~~----g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------- 61 (153)
T 1awc_B 2 LGKKLLEA--ARAGQDDEVRILMAN----GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD------------- 61 (153)
T ss_dssp HHHHHHHH--HHHTCHHHHHHHHHH----TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-------------
T ss_pred ccHHHHHH--HHcCCHHHHHHHHHc----CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------------
Confidence 34677777 777777777777662 22222 46667777777777777777777777777643
Q ss_pred HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT 222 (405)
Q Consensus 143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 222 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 62 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t 135 (153)
T 1awc_B 62 -----ARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT 135 (153)
T ss_dssp -----CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred -----CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence 666777777777777777777777777777776 56777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCccHHHHHHH
Q 040751 223 ALHAAAMKFDLVDTALRKL 241 (405)
Q Consensus 223 ~L~~a~~~~~~~~~~v~~L 241 (405)
||++|+..++. +++++|
T Consensus 136 ~l~~A~~~~~~--~i~~~L 152 (153)
T 1awc_B 136 AFDISIDNGNE--DLAEIL 152 (153)
T ss_dssp HHHHHHHTTCH--HHHHHH
T ss_pred HHHHHHHcCCH--HHHHHh
Confidence 77777777777 776654
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=2.8e-28 Score=195.39 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=141.0
Q ss_pred hccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhh
Q 040751 60 AKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGV 139 (405)
Q Consensus 60 ~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~ 139 (405)
+..|.+|||.| +..|+.+++++|++ ..+..+...+..|.||||+|+..|+.+++++|+++|++++
T Consensus 5 ~~~~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------- 69 (165)
T 3twr_A 5 NSEADRQLLEA--AKAGDVETVKKLCT---VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH---------- 69 (165)
T ss_dssp -CHHHHHHHHH--HHHTCHHHHHHHCC---TTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------
T ss_pred cchhhHHHHHH--HHhCCHHHHHHHHH---cCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC----------
Confidence 45688999999 99999999988865 3456677788889999999999999999999999998854
Q ss_pred hHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Q 040751 140 GAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPN 219 (405)
Q Consensus 140 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~ 219 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus 70 --------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 140 (165)
T 3twr_A 70 --------AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRD 140 (165)
T ss_dssp --------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred --------ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC
Confidence 788899999999999999999999999999988 78889999999999999999999999999999999999
Q ss_pred CCcHHHHHHhcCCccHHHHHHHHHhh
Q 040751 220 GKTALHAAAMKFDLVDTALRKLLEKK 245 (405)
Q Consensus 220 ~~t~L~~a~~~~~~~~~~v~~Ll~~~ 245 (405)
|.|||++|+. ++. +++++|+..+
T Consensus 141 g~t~l~~a~~-~~~--~i~~~L~~~g 163 (165)
T 3twr_A 141 GNTPLDLVKD-GDT--DIQDLLRGDA 163 (165)
T ss_dssp SCCTGGGSCT-TCH--HHHHHHHTC-
T ss_pred CCChhHhHhc-CCh--HHHHHHhhcc
Confidence 9999999776 777 8998888654
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.2e-30 Score=217.48 Aligned_cols=196 Identities=16% Similarity=0.119 Sum_probs=137.5
Q ss_pred HHHHHhcCCCCcc--ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751 169 VKILTKEDPDYRY--SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE 246 (405)
Q Consensus 169 ~~~Ll~~~~~~~~--~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~ 246 (405)
++.|+++|++++. ..+..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~--~~v~~Ll~~ga 78 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY--SIVDFLITAGA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHCCC
Confidence 3567777766542 2344667778888888888888888888888888888888888888888888 88888888765
Q ss_pred hhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHH--HhcCCHHHHHHHHhcCC
Q 040751 247 NLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLA--AGQGNAEIVDAIISKNP 324 (405)
Q Consensus 247 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A--~~~~~~~~v~~Ll~~~~ 324 (405)
+ ++.++..|.||||+|+..| +.+++++|++.+.++ +...+..|.||||+| +..++.+++++|+++|+
T Consensus 79 ~-~n~~d~~g~tpLh~A~~~g---------~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga 147 (229)
T 2vge_A 79 N-VNSPDSHGWTPLHCAASCN---------DTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147 (229)
T ss_dssp C-TTCCCTTCCCHHHHHHHTT---------CHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH
T ss_pred C-CCCCCCCCCCHHHHHHHcC---------CHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC
Confidence 5 6778888888888888887 557888888888877 333334888999999 88999999999999888
Q ss_pred cccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhccccc--cccccCCCCchhhhhhccccc
Q 040751 325 ECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRNTQVN--YDAVNKQNVSVEHILDYEHIL 402 (405)
Q Consensus 325 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~~g~d--~~~~~~~g~t~l~~a~~~~~~ 402 (405)
++ +..+..|.++++ .++..+ ..++|++. |++ ++.+|..|+|||++|++.+..
T Consensus 148 ~~-~~~~~~~~~~l~---------------------~~~~~~---~~~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~~ 201 (229)
T 2vge_A 148 SM-GLMNSGAVYALW---------------------DYSAEF---GDELSFRE-GESVTVLRRDGPEETDWWWAALHGQE 201 (229)
T ss_dssp HT-TTSGGGEEEESS---------------------CBCCSS---TTBCCBCT-TCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred Cc-ccccCCchHHHH---------------------HHhhcc---ccccCccc-cccccccccCCCcccHHHHHHHcCCc
Confidence 75 444444444443 222222 12455555 666 566777788888887777765
Q ss_pred C
Q 040751 403 D 403 (405)
Q Consensus 403 ~ 403 (405)
+
T Consensus 202 ~ 202 (229)
T 2vge_A 202 G 202 (229)
T ss_dssp E
T ss_pred c
Confidence 4
No 73
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=6.5e-28 Score=195.92 Aligned_cols=160 Identities=23% Similarity=0.253 Sum_probs=137.4
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 141 (405)
++.++||.| +..|+.+++++|++ ..+..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 4 ~~~~~l~~A--~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------ 66 (179)
T 3f6q_A 4 EFMDDIFTQ--CREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN------------ 66 (179)
T ss_dssp ---CCHHHH--HHHTCHHHHHHHHH---CTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred HHHHHHHHH--HHcCCHHHHHHHHh---cCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC------------
Confidence 478889999 88999888888866 4466778888889999999999999999999999988754
Q ss_pred HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221 (405)
Q Consensus 142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 221 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.
T Consensus 67 ------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 139 (179)
T 3f6q_A 67 ------VMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 139 (179)
T ss_dssp ------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred ------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCC
Confidence 778889999999999999999999999999887 7788899999999999999999999999999999999999
Q ss_pred cHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751 222 TALHAAAMKFDLVDTALRKLLEKKEN 247 (405)
Q Consensus 222 t~L~~a~~~~~~~~~~v~~Ll~~~~~ 247 (405)
|||+.|+..++. +++++|++.+.+
T Consensus 140 tpl~~A~~~~~~--~~~~~L~~~g~~ 163 (179)
T 3f6q_A 140 MPVDKAKAPLRE--LLRERAEKMGQN 163 (179)
T ss_dssp CGGGGSCHHHHH--HHHHHHHHTTCC
T ss_pred CcHHHHHHHHHH--HHHHHHHHhhcC
Confidence 999999888888 888888887765
No 74
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=2e-27 Score=187.80 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=137.6
Q ss_pred CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc
Q 040751 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY 181 (405)
Q Consensus 102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~ 181 (405)
..|||+.|+..|+.+++++|+++|.+.. .+..|.||||+|+..|+.+++++|++.|++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 61 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-------------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD- 61 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-------------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence 3589999999999999999999998753 57789999999999999999999999999988
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751 182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261 (405)
Q Consensus 182 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~ 261 (405)
..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.+ ++.++..|.||++
T Consensus 62 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~~g~t~l~ 138 (153)
T 1awc_B 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQ--EVVELLIKYGAD-VHTQSKFCKTAFD 138 (153)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred CCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-ccccCCCCCCHHH
Confidence 7888999999999999999999999999999999999999999999999999 999999998766 7888999999999
Q ss_pred HHHHcChhhhhh
Q 040751 262 YAAYHGMYWINR 273 (405)
Q Consensus 262 ~a~~~~~~~~~~ 273 (405)
+|+..|+.++.+
T Consensus 139 ~A~~~~~~~i~~ 150 (153)
T 1awc_B 139 ISIDNGNEDLAE 150 (153)
T ss_dssp HHHHTTCHHHHH
T ss_pred HHHHcCCHHHHH
Confidence 999999654443
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=2.3e-28 Score=198.56 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=151.0
Q ss_pred cCCHHHHHHhhcCCCchhhhhHHHH-HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751 29 QMDPKFFKAAADGNVEPFKDMAREK-IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLH 107 (405)
Q Consensus 29 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 107 (405)
+..++|+.|+..|+.+.|++|++.+ .+.+..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA--CREGRSAVVEMLIM----RGARINVMNRGDDTPLH 77 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH--HHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHH
Confidence 3456799999999999999999984 55667888899999999 99999999999987 47788899999999999
Q ss_pred HHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCC
Q 040751 108 VAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDG 187 (405)
Q Consensus 108 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g 187 (405)
+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++ ..+..|
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~~------------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g 138 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADIN------------------AVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-ICNKYG 138 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS-BCCTTS
T ss_pred HHHHcCCHHHHHHHHHcCCCCC------------------ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-hhccCC
Confidence 9999999999999999999854 788999999999999999999999999999988 789999
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Q 040751 188 KTPLYMAAESRSSDMVLALLENSTSVSHEGPNG 220 (405)
Q Consensus 188 ~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~ 220 (405)
.|||++|+..++.+++++|+++|++++..+..+
T Consensus 139 ~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 139 EMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 999999999999999999999999998765443
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=2.1e-27 Score=188.44 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=121.4
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 142 (405)
+.||||+| +..|+.+++++|++. .+..++..+..|.||||+ +..|+.+++++|+++|++++
T Consensus 2 ~~~~L~~A--~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~------------- 62 (156)
T 1bd8_A 2 AGDRLSGA--AARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN------------- 62 (156)
T ss_dssp HHHHHHHH--HHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-------------
T ss_pred cchHHHHH--HHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-------------
Confidence 56788888 888888888887662 344667777788888888 77888888888888887743
Q ss_pred HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT 222 (405)
Q Consensus 143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 222 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++ ++++.++..|.|
T Consensus 63 -----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t 135 (156)
T 1bd8_A 63 -----VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT 135 (156)
T ss_dssp -----CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC
T ss_pred -----CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC
Confidence 677778888888888888888888888888876 6777888888888888888888888887 888888888888
Q ss_pred HHHHHHhcCCccHHHHHHHHH
Q 040751 223 ALHAAAMKFDLVDTALRKLLE 243 (405)
Q Consensus 223 ~L~~a~~~~~~~~~~v~~Ll~ 243 (405)
||++|+..++. +++++|++
T Consensus 136 ~l~~A~~~~~~--~~v~~Ll~ 154 (156)
T 1bd8_A 136 PLELALQRGAQ--DLVDILQG 154 (156)
T ss_dssp HHHHHHHSCCH--HHHHHHHT
T ss_pred HHHHHHHcCcH--HHHHHHHh
Confidence 88888888888 88887765
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=4.8e-27 Score=186.33 Aligned_cols=154 Identities=22% Similarity=0.234 Sum_probs=139.6
Q ss_pred CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCcc
Q 040751 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRY 181 (405)
Q Consensus 102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~ 181 (405)
+.||||.|+..|+.+++++|+++ ...+ ++..+..|.||||+ +..|+.+++++|++.|++++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~----------------~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~- 62 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVH----------------PDALNRFGKTALQV-MMFGSTAIALELLKQGASPN- 62 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCC----------------TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcC----------------ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-
Confidence 46899999999999999999999 3111 45788899999999 99999999999999999988
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHH
Q 040751 182 SANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIH 261 (405)
Q Consensus 182 ~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~ 261 (405)
..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++. .+++.++..|.|||+
T Consensus 63 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~--~~~~~~~~~g~t~l~ 138 (156)
T 1bd8_A 63 VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHT--AVVSFLAAE--SDLHRRDARGLTPLE 138 (156)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH--HHHHHHHTT--SCTTCCCTTSCCHHH
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChH--HHHHHHHhc--cCCCCcCCCCCCHHH
Confidence 7889999999999999999999999999999999999999999999999999 999999988 447889999999999
Q ss_pred HHHHcChhhhhhhccccchhHHHHhh
Q 040751 262 YAAYHGMYWINRFYGNYGTVNLLLET 287 (405)
Q Consensus 262 ~a~~~~~~~~~~~l~~~~~~~~Ll~~ 287 (405)
+|+..| +.+++++|+++
T Consensus 139 ~A~~~~---------~~~~v~~Ll~~ 155 (156)
T 1bd8_A 139 LALQRG---------AQDLVDILQGH 155 (156)
T ss_dssp HHHHSC---------CHHHHHHHHTT
T ss_pred HHHHcC---------cHHHHHHHHhh
Confidence 999998 44677777654
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=1.5e-27 Score=191.18 Aligned_cols=161 Identities=24% Similarity=0.241 Sum_probs=142.3
Q ss_pred ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP 177 (405)
Q Consensus 98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 177 (405)
.+..|.||||.|+..|+.+++++|++.+... ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~-----------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 66 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVN-----------------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGA 66 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTT-----------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCC-----------------ccccccCCCCHHHHHHHcChHHHHHHHHhcCC
Confidence 3567889999999999999999999865432 34567789999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCC
Q 040751 178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGW 257 (405)
Q Consensus 178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 257 (405)
+++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.+ ++.++..|.
T Consensus 67 ~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~~g~ 142 (165)
T 3twr_A 67 DVH-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKY--EICKLLLQHGAD-PTKKNRDGN 142 (165)
T ss_dssp CTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCC-TTCCCTTSC
T ss_pred CCC-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHcCCC-CcccCCCCC
Confidence 988 7888999999999999999999999999999999999999999999999999 999999998766 788999999
Q ss_pred CHHHHHHHcChhhhhhhccccchhHHHHhhcc
Q 040751 258 TPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ 289 (405)
Q Consensus 258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~ 289 (405)
||+++|+. + +.+++++|++.++
T Consensus 143 t~l~~a~~-~---------~~~i~~~L~~~gA 164 (165)
T 3twr_A 143 TPLDLVKD-G---------DTDIQDLLRGDAA 164 (165)
T ss_dssp CTGGGSCT-T---------CHHHHHHHHTC--
T ss_pred ChhHhHhc-C---------ChHHHHHHhhccc
Confidence 99999876 5 4468888887764
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.1e-27 Score=203.95 Aligned_cols=177 Identities=20% Similarity=0.133 Sum_probs=127.1
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 141 (405)
.|.||||.| +..+..+.++.|++. +..++. +..|.||||.|+..|+.++|++|+++|++++
T Consensus 4 ~g~t~L~~a--~~~~~~~~~~~ll~~----g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------ 64 (239)
T 1ycs_B 4 TGQVSLPPG--KRTNLRKTGSERIAH----GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS------------ 64 (239)
T ss_dssp ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC------------
T ss_pred cccccCchh--hhhhhHHHHHHHhcc----CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC------------
Confidence 489999999 889999999988773 444543 4678999999999999999999999998754
Q ss_pred HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCC
Q 040751 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGK 221 (405)
Q Consensus 142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~ 221 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus 65 ------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~ 137 (239)
T 1ycs_B 65 ------LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137 (239)
T ss_dssp ------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred ------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCC
Confidence 788899999999999999999999999999988 7888999999999999999999999999999999888776
Q ss_pred -cHHHHH--HhcCCccHHHHHHHHHhhhhhhhhc---------ccCCCCHHHHHHHcC
Q 040751 222 -TALHAA--AMKFDLVDTALRKLLEKKENLIKET---------DQYGWTPIHYAAYHG 267 (405)
Q Consensus 222 -t~L~~a--~~~~~~~~~~v~~Ll~~~~~~~~~~---------~~~~~t~l~~a~~~~ 267 (405)
||||.| +..++. +++++|+..+.. ++.. +..+.++++++...|
T Consensus 138 ~t~l~~a~~~~~g~~--~~~~~Ll~~~a~-~~~~~~~~~~al~d~~~~~~~eLa~~~G 192 (239)
T 1ycs_B 138 QTAADKCEEMEEGYT--QCSQFLYGVQEK-MGIMNKGVIYALWDYEPQNDDELPMKEG 192 (239)
T ss_dssp CCHHHHCCSSSTTCC--CHHHHHHHHHHH-TTTTGGGEEEESSCBCCSSTTBCCBCSS
T ss_pred cchHHHHHHhhhccH--HHHHHHHHhhhc-ccccccceEEEEeccCCCCCCcccccCC
Confidence 999999 777888 999999988765 3333 556788888877776
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=6.4e-28 Score=205.29 Aligned_cols=178 Identities=17% Similarity=0.035 Sum_probs=130.5
Q ss_pred CCHHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHH
Q 040751 30 MDPKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVA 109 (405)
Q Consensus 30 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A 109 (405)
-.+|||.|++.|+.+.++.|+++|.+.+.. ..|.||||+| +..|+.+++++|++ .+.+++..|..|.||||+|
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A 77 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDS--SLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNA 77 (239)
T ss_dssp ---------------------------------CHHHHHHH--HHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHH
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHH--HHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHH
Confidence 356899999999999999999999888755 4599999999 99999999999976 4668899999999999999
Q ss_pred HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCC-
Q 040751 110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGK- 188 (405)
Q Consensus 110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~- 188 (405)
+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.
T Consensus 78 ~~~g~~~~v~~Ll~~ga~~------------------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~~~ 138 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVNV------------------NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF-AMTYSDMQ 138 (239)
T ss_dssp HHHTCHHHHHHHHHHTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSSCC
T ss_pred HHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-eecCCCCc
Confidence 9999999999999999985 4889999999999999999999999999999998 5555555
Q ss_pred cHHHHH--HHcCCHHHHHHHHHcCCCCccc---------CCCCCcHHHHHHhcCCc
Q 040751 189 TPLYMA--AESRSSDMVLALLENSTSVSHE---------GPNGKTALHAAAMKFDL 233 (405)
Q Consensus 189 t~L~~a--~~~~~~~~v~~Ll~~g~~~~~~---------~~~~~t~L~~a~~~~~~ 233 (405)
||||+| +..|+.+++++|+++|++++.. +..+.++++.+...|..
T Consensus 139 t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 139 TAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC 194 (239)
T ss_dssp CHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred chHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCE
Confidence 999999 7889999999999999888765 55677888888777765
No 81
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=4.6e-26 Score=176.06 Aligned_cols=133 Identities=17% Similarity=0.126 Sum_probs=124.4
Q ss_pred CcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHH
Q 040751 92 PSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKI 171 (405)
Q Consensus 92 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 171 (405)
+..++..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+. ++.+++++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~-~~~~~v~~ 62 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN------------------ALNRFGRRPIQVMMM-GSAQVAEL 62 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT------------------CCCTTCCTTTTTSTT-SCHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC------------------CcCCCCCCHHHHHHc-CCHHHHHH
Confidence 34678889999999999999999999999999998854 788999999999999 99999999
Q ss_pred HHhcCCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751 172 LTKEDPDYRYSANND-GKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE 246 (405)
Q Consensus 172 Ll~~~~~~~~~~~~~-g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~ 246 (405)
|+++|++++ ..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.
T Consensus 63 Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--~~~~~Ll~~Ga 135 (136)
T 1d9s_A 63 LLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHR--DIARYLHAATG 135 (136)
T ss_dssp HHHHTCCSS-CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCH--HHHHHHHHHHC
T ss_pred HHHCCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH--HHHHHHHHcCC
Confidence 999999998 67778 99999999999999999999999999999999999999999999999 99999998764
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=1.1e-25 Score=178.34 Aligned_cols=145 Identities=15% Similarity=0.083 Sum_probs=112.2
Q ss_pred ccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc
Q 040751 96 LQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE 175 (405)
Q Consensus 96 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 175 (405)
...+..|.||||+|+..|+.++|++|+++|++++ ..+..|.||||+|+ .|+.+++++|+++
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~------------------~~~~~g~t~L~~A~-~~~~~~v~~Ll~~ 66 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN------------------APNSYGRRPIQVMM-MGSARVAELLLLH 66 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT------------------CCCSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC------------------CCCCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence 4557788999999999999999999999988744 77888999999985 8899999999999
Q ss_pred CCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhccc
Q 040751 176 DPDYRYSANNDGKT-PLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQ 254 (405)
Q Consensus 176 ~~~~~~~~~~~g~t-~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~ 254 (405)
|++++ ..+..|.| |||+|+..|+.+++++|+++|++++.++..|.||||+|+..++. +++++|++.+.+ ++.++.
T Consensus 67 g~~~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--~~v~~Ll~~ga~-~~~~~~ 142 (156)
T 1bi7_B 67 GAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR--DVARYLRAAAGG-TRGSNH 142 (156)
T ss_dssp TCCCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCH--HHHHHHSSCC---------
T ss_pred CCCCC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHH--HHHHHHHHcCCC-CCccCc
Confidence 99987 77888888 99999999999999999999999999999999999999999998 999999888766 677888
Q ss_pred CCCCHHHHH
Q 040751 255 YGWTPIHYA 263 (405)
Q Consensus 255 ~~~t~l~~a 263 (405)
.|.||.+.+
T Consensus 143 ~g~t~~~~~ 151 (156)
T 1bi7_B 143 ARIDAAEGP 151 (156)
T ss_dssp ---------
T ss_pred CcCcccccC
Confidence 888887643
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=5.5e-26 Score=184.62 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=131.6
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCccccccc-CCCChHHHHHHHhCcH----HHHHHHHHccCCCCCchhHHhh
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVN-AKGDTPLHVAAKFGHS----GIVTFLVERAKLPQHENEELES 137 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~ 137 (405)
++++|+.| +..|+.+.++.++. .. ++..+ ..|+||||+|+..|+. +++++|+++|++++
T Consensus 6 ~~~~l~~A--a~~g~~~~~~~l~~---~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-------- 69 (186)
T 3t8k_A 6 EYRTVSAA--AMLGTYEDFLELFE---KG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-------- 69 (186)
T ss_dssp HCSSHHHH--HHHSCHHHHHHHHH---HS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS--------
T ss_pred cccHHHHH--HHcCCHHHHHHHHh---cC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC--------
Confidence 67899999 88999887776655 22 23344 6799999999999875 58999999999865
Q ss_pred hhhHHHHHhhhccCCCchHhHHHHhCCC------HHHHHHHHhcCCCCccccCCCCC-cHHHHHHHcC-----CHHHHHH
Q 040751 138 GVGAARQMIKMTNNEKNTALHEAVCHKN------VDVVKILTKEDPDYRYSANNDGK-TPLYMAAESR-----SSDMVLA 205 (405)
Q Consensus 138 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~a~~~~-----~~~~v~~ 205 (405)
.++..|.||||+|+..++ .+++++|+++|++++ .++..|. ||||+|+..+ ..+++++
T Consensus 70 ----------~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~ 138 (186)
T 3t8k_A 70 ----------SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138 (186)
T ss_dssp ----------CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred ----------CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence 888999999999999886 578999999999998 7888999 9999999844 3568999
Q ss_pred HHH-cCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751 206 LLE-NSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE 246 (405)
Q Consensus 206 Ll~-~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~ 246 (405)
|++ +|++++.+|..|.||||+|+..+.. ++++.|.....
T Consensus 139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~--~~v~~L~~~~~ 178 (186)
T 3t8k_A 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKP--IALKMMEDYIK 178 (186)
T ss_dssp HHTSTTCCTTCCCTTSCCHHHHHHTTTCH--HHHHHHHHHHH
T ss_pred HHHhcCCCCcccCCCCCCHHHHHHHcCCH--HHHHHHHHHHH
Confidence 999 9999999999999999999999998 88888877543
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=3.4e-26 Score=185.90 Aligned_cols=159 Identities=11% Similarity=0.060 Sum_probs=136.9
Q ss_pred HHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhc----ccHHHHHHHHHhCCcccccccCCCChHHH
Q 040751 32 PKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKEREN----VSTEFVEEILEKCPSLLLQVNAKGDTPLH 107 (405)
Q Consensus 32 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~g~t~L~ 107 (405)
++|+.|++.|+++.|+.+++.+++. ..+..|+||||+| +..++. +++++|++ .+.+++..+..|+||||
T Consensus 8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~A--~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh 80 (186)
T 3t8k_A 8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYDV--LRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFF 80 (186)
T ss_dssp SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHHH--TTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHHH--HHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHH
Confidence 4699999999999999999887543 2336699999999 887754 47777776 58899999999999999
Q ss_pred HHHHhCc------HHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCc-hHhHHHHhCCC-----HHHHHHHHh-
Q 040751 108 VAAKFGH------SGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKN-TALHEAVCHKN-----VDVVKILTK- 174 (405)
Q Consensus 108 ~A~~~g~------~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~-----~~~~~~Ll~- 174 (405)
+|+..|+ .+++++|+++|++++ .+|..|. ||||+|+..+. .+++++|++
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin------------------~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~ 142 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADIT------------------ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ 142 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSS------------------SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCC------------------ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence 9999987 688999999999965 8899999 99999999543 569999999
Q ss_pred cCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751 175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216 (405)
Q Consensus 175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~ 216 (405)
+|++++ .++..|.||||+|+..|+.+++++|.++..+.+.+
T Consensus 143 ~gad~~-~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 143 SGLQLL-IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp TTCCTT-CCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred cCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999998 89999999999999999999999999876544443
No 85
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=1.1e-25 Score=178.21 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=114.7
Q ss_pred hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhh
Q 040751 58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELES 137 (405)
Q Consensus 58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~ 137 (405)
..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|+ .|+.+++++|+++|++++
T Consensus 7 ~~~~~~~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-------- 71 (156)
T 1bi7_B 7 SSMEPSADWLATA--AARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-------- 71 (156)
T ss_dssp ---CCSTTHHHHH--HHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC--------
T ss_pred CCCccchHHHHHH--HHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC--------
Confidence 4456799999999 99999999999977 46778889999999999986 999999999999998854
Q ss_pred hhhHHHHHhhhccCCCch-HhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751 138 GVGAARQMIKMTNNEKNT-ALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216 (405)
Q Consensus 138 ~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~ 216 (405)
.++..|.| |||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+
T Consensus 72 ----------~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~ 140 (156)
T 1bi7_B 72 ----------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS 140 (156)
T ss_dssp ----------CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred ----------CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence 78889999 9999999999999999999999988 78899999999999999999999999999999999
Q ss_pred CCCCCcHHHHH
Q 040751 217 GPNGKTALHAA 227 (405)
Q Consensus 217 ~~~~~t~L~~a 227 (405)
+..|.||.+.+
T Consensus 141 ~~~g~t~~~~~ 151 (156)
T 1bi7_B 141 NHARIDAAEGP 151 (156)
T ss_dssp -----------
T ss_pred CcCcCcccccC
Confidence 99999987643
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=1.4e-25 Score=173.40 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=118.0
Q ss_pred hhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHh
Q 040751 57 LLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELE 136 (405)
Q Consensus 57 ~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~ 136 (405)
+..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|+. |+.+++++|+++|++++
T Consensus 6 ~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~------- 71 (136)
T 1d9s_A 6 HMLGGSSDAGLATA--AARGQVETVRQLLE----AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN------- 71 (136)
T ss_dssp SCCCCCCSCHHHHH--HHTTCHHHHHHHHH----TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-------
T ss_pred cCCCCCCccHHHHH--HHcCCHHHHHHHHH----cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-------
Confidence 35667799999999 99999999999987 367788889999999999999 99999999999998854
Q ss_pred hhhhHHHHHhhhccCC-CchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751 137 SGVGAARQMIKMTNNE-KNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212 (405)
Q Consensus 137 ~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~ 212 (405)
.++.. |.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++
T Consensus 72 -----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 72 -----------CADPATLTRPVHDAAREGFLDTLVVLHRAGARLD-VCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp -----------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCC-CCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred -----------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 77888 9999999999999999999999999987 7888999999999999999999999999875
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=2.2e-24 Score=166.55 Aligned_cols=126 Identities=22% Similarity=0.211 Sum_probs=116.9
Q ss_pred ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP 177 (405)
Q Consensus 98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 177 (405)
....+.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 71 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADV------------------NAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 4556789999999999999999999999885 4788899999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHh
Q 040751 178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEK 244 (405)
Q Consensus 178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~ 244 (405)
+++ ..+..|.||||+|+..|+.+++++|+++|++++..|..|.|||++|+..++. +++++|++.
T Consensus 72 ~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~--~~~~~Ll~~ 135 (136)
T 2jab_A 72 DVN-AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE--DLAEILQKL 135 (136)
T ss_dssp CTT-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHC
T ss_pred CCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH--HHHHHHHHc
Confidence 988 7888999999999999999999999999999999999999999999999999 999999874
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=5.7e-24 Score=162.00 Aligned_cols=125 Identities=34% Similarity=0.506 Sum_probs=118.2
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180 (405)
Q Consensus 101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~ 180 (405)
+|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|++.|++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~ 62 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN------------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT------------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC------------------CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc
Confidence 58999999999999999999999998854 778899999999999999999999999999987
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhh
Q 040751 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKE 246 (405)
Q Consensus 181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~ 246 (405)
..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++. +++++|++.+.
T Consensus 63 -~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~~~~~Ll~~Ga 125 (126)
T 1n0r_A 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL--EVVKLLLEAGA 125 (126)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHTC
T ss_pred -ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcH--HHHHHHHHcCC
Confidence 7888999999999999999999999999999999999999999999999999 99999998764
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=1.3e-23 Score=160.06 Aligned_cols=126 Identities=28% Similarity=0.404 Sum_probs=117.1
Q ss_pred cccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhH
Q 040751 62 TRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGA 141 (405)
Q Consensus 62 ~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~ 141 (405)
+|.||||+| +..|+.+++++|++. +..++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 1 ~g~t~L~~A--~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------ 62 (126)
T 1n0r_A 1 NGRTPLHLA--ARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN------------ 62 (126)
T ss_dssp CCCCHHHHH--HHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT------------
T ss_pred CCccHHHHH--HHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc------------
Confidence 489999999 999999999999873 56678889999999999999999999999999998854
Q ss_pred HHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751 142 ARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS 212 (405)
Q Consensus 142 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~ 212 (405)
.++..|.||||+|+..++.+++++|+++|++++ ..+..|.|||++|+..++.+++++|+++|++
T Consensus 63 ------~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 63 ------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred ------ccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 788899999999999999999999999999988 7889999999999999999999999999985
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=9e-24 Score=163.10 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=113.5
Q ss_pred hhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhh
Q 040751 59 TAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG 138 (405)
Q Consensus 59 ~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 138 (405)
....+.||||+| +..|+.+++++|++ .+.+++..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 10 ~~~~~~t~l~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--------- 74 (136)
T 2jab_A 10 HGSDLGKKLLEA--ARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN--------- 74 (136)
T ss_dssp --CHHHHHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT---------
T ss_pred ccccccHHHHHH--HHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC---------
Confidence 344588999999 99999999999987 367788889999999999999999999999999998854
Q ss_pred hhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 040751 139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENS 210 (405)
Q Consensus 139 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g 210 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|
T Consensus 75 ---------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 75 ---------AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp ---------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred ---------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-CcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 788899999999999999999999999999987 78889999999999999999999999876
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=3.4e-24 Score=165.81 Aligned_cols=126 Identities=24% Similarity=0.263 Sum_probs=113.9
Q ss_pred cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcC
Q 040751 97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKED 176 (405)
Q Consensus 97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 176 (405)
..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 66 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN------------------VKDHAGWTPLHEACNHGHLKVVELLLQHK 66 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 578899999999999999999999999998854 78889999999999999999999999999
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHH
Q 040751 177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243 (405)
Q Consensus 177 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~ 243 (405)
++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..+.. +++.+|..
T Consensus 67 ~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~--~~l~~l~~ 130 (137)
T 3c5r_A 67 ALVN-TTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMK--SLLLLPEK 130 (137)
T ss_dssp CCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHH--HHHSCC--
T ss_pred Cccc-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHH--HHHhhccc
Confidence 9988 7888999999999999999999999999999999999999999999877666 66655544
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.90 E-value=2.2e-24 Score=183.87 Aligned_cols=170 Identities=21% Similarity=0.171 Sum_probs=137.8
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHH
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAA 142 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~ 142 (405)
+.+++.++ +..|+...+..+.. .....+..|.||||+|+..|+.++|++|++ |+++
T Consensus 15 ~~~~~l~~--~~~g~~~~~~~~~~-------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-------------- 70 (244)
T 3ui2_A 15 GAMEYLIE--WKDGHSPSWVPSSY-------IAADVVSEYETPWWTAARKADEQALSQLLE-DRDV-------------- 70 (244)
T ss_dssp TEEEEEEE--ESSCCCCEEEEGGG-------SCHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCT--------------
T ss_pred CccHHHHH--HHcCCCcccccccc-------cccccccCCCCHHHHHHHcCCHHHHHHHHc-CCCC--------------
Confidence 55666666 66666665544322 123345678899999999999999999999 7774
Q ss_pred HHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCc
Q 040751 143 RQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKT 222 (405)
Q Consensus 143 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t 222 (405)
+..+..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+.+++++|+++|++++.++..|.|
T Consensus 71 ----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t 146 (244)
T 3ui2_A 71 ----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT 146 (244)
T ss_dssp ----TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred ----CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 4788999999999999999999999999999998444488999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcc
Q 040751 223 ALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQ 289 (405)
Q Consensus 223 ~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~ 289 (405)
|||+|+..+. ...+.|||++|+..|+. +++++|++...
T Consensus 147 ~l~~A~~~~~--------------------~~~~~~~l~~a~~~g~~---------~iv~~L~~~~~ 184 (244)
T 3ui2_A 147 ALELAREILK--------------------TTPKGNPMQFGRRIGLE---------KVINVLEGQVF 184 (244)
T ss_dssp HHHHHHHHHT--------------------TCCCSSHHHHHHHHHHH---------HHHHHHHHHHE
T ss_pred HHHHHHHHHh--------------------ccCCCCHHHHHHHcChH---------HHHHHHHHhcc
Confidence 9999985322 24578999999998844 57777776543
No 93
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=2.9e-23 Score=168.93 Aligned_cols=142 Identities=23% Similarity=0.237 Sum_probs=123.6
Q ss_pred ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC
Q 040751 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP 177 (405)
Q Consensus 98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~ 177 (405)
.+..|.||||.|+..|+.+++++|++ |+++ +..+..|.||||+|+..|+.+++++|+++|+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~------------------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 100 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDV------------------DAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCT------------------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCC------------------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 35578899999999999999999999 7774 4789999999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCC
Q 040751 178 DYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGW 257 (405)
Q Consensus 178 ~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 257 (405)
+++...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++. ..+.
T Consensus 101 ~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~ 160 (183)
T 3deo_A 101 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------------------TPKG 160 (183)
T ss_dssp CTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------------CCCC
T ss_pred CCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------------cccc
Confidence 99843348999999999999999999999999999999999999999999864332 3467
Q ss_pred CHHHHHHHcChhhhhhhccccchhHHHHhh
Q 040751 258 TPIHYAAYHGMYWINRFYGNYGTVNLLLET 287 (405)
Q Consensus 258 t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~ 287 (405)
++|++++..|.. +++++|.++
T Consensus 161 ~~l~~a~~~~~~---------~i~~~L~~~ 181 (183)
T 3deo_A 161 NPMQFGRRIGLE---------KVINVLEGQ 181 (183)
T ss_dssp SHHHHHHHHHHH---------HHHHHHHTC
T ss_pred cHHHHHHHcCHH---------HHHHHHHHh
Confidence 999999998844 566666543
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=4.6e-23 Score=156.15 Aligned_cols=112 Identities=22% Similarity=0.228 Sum_probs=102.3
Q ss_pred cCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCC
Q 040751 99 NAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPD 178 (405)
Q Consensus 99 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~ 178 (405)
+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.|++
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 65 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV------------------NRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT------------------TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc------------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 456789999999999999999999999874 47888999999999999999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q 040751 179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM 229 (405)
Q Consensus 179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 229 (405)
++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|..
T Consensus 66 ~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 66 IN-APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp TT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred CC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 88 788999999999999999999999999999999999999999999943
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.3e-22 Score=164.99 Aligned_cols=140 Identities=22% Similarity=0.260 Sum_probs=127.7
Q ss_pred cCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHH
Q 040751 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG-PNGKTALHAAA 228 (405)
Q Consensus 150 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~ 228 (405)
+..|.||||+|+..|+.+++++|++ |.+++ ..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4578999999999999999999999 98887 788999999999999999999999999999999888 88999999999
Q ss_pred hcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHH
Q 040751 229 MKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308 (405)
Q Consensus 229 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~ 308 (405)
..++. +++++|++.+.+ ++.++..|.||||+|+..+.. ..+.+++++|+
T Consensus 119 ~~~~~--~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~----------------------------~~~~~~l~~a~ 167 (183)
T 3deo_A 119 GYVRP--EVVEALVELGAD-IEVEDERGLTALELAREILKT----------------------------TPKGNPMQFGR 167 (183)
T ss_dssp HTTCH--HHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT----------------------------CCCCSHHHHHH
T ss_pred hcCcH--HHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC----------------------------cccccHHHHHH
Confidence 99999 999999998766 788999999999999976411 25679999999
Q ss_pred hcCCHHHHHHHHhc
Q 040751 309 GQGNAEIVDAIISK 322 (405)
Q Consensus 309 ~~~~~~~v~~Ll~~ 322 (405)
..|..+++++|.++
T Consensus 168 ~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 168 RIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HcCHHHHHHHHHHh
Confidence 99999999999865
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=1.5e-23 Score=162.06 Aligned_cols=133 Identities=26% Similarity=0.350 Sum_probs=115.1
Q ss_pred HHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCch
Q 040751 53 KIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHEN 132 (405)
Q Consensus 53 ~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 132 (405)
|+++ ..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 1 G~d~-~~~~~g~t~L~~A--~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---- 69 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIA--SIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV---- 69 (137)
T ss_dssp ---C-CCCTTCCCHHHHH--HHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----
T ss_pred CCCC-CcCCCCCCHHHHH--HHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc----
Confidence 3455 5677799999999 99999999999987 46778889999999999999999999999999999885
Q ss_pred hHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 040751 133 EELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENST 211 (405)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~ 211 (405)
+..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..+..+++++|.+.+.
T Consensus 70 --------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 70 --------------NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN-AVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp --------------TCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred --------------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 4788899999999999999999999999999988 789999999999999999999888876553
No 97
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=175.28 Aligned_cols=147 Identities=18% Similarity=0.084 Sum_probs=123.4
Q ss_pred CCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC---CCHHHHHHHHhcC
Q 040751 100 AKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKED 176 (405)
Q Consensus 100 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~ 176 (405)
....++|+.|+..|+.+.++.|++.|++++..... ...+..|.||||+|+.. ++.+++++|+++|
T Consensus 149 ~~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~------------~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g 216 (301)
T 2b0o_E 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPG------------PDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 216 (301)
T ss_dssp C-CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEEC------------SSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS
T ss_pred CchHHHHhhhhhccCHHHHHHHHhcCCcccccCCC------------cccCCCCccHHHHHHHhcccCcHHHHHHHHhcC
Confidence 33557899999999999999999999886410000 01578899999999997 8999999999999
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCC
Q 040751 177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYG 256 (405)
Q Consensus 177 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 256 (405)
++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++. +++++|+..+.+ .|
T Consensus 217 advn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~--~iv~~Ll~~ga~-------~g 286 (301)
T 2b0o_E 217 GHLD-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK--ECEELLEQAQAG-------TF 286 (301)
T ss_dssp SCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCH--HHHHHHHHHHHH-------TT
T ss_pred CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHhcCC-------CC
Confidence 9998 7889999999999999999999999999999999999999999999999999 999999987764 48
Q ss_pred CCHHHHHHHcCh
Q 040751 257 WTPIHYAAYHGM 268 (405)
Q Consensus 257 ~t~l~~a~~~~~ 268 (405)
.||||+|+..|+
T Consensus 287 ~tpLh~A~~~g~ 298 (301)
T 2b0o_E 287 AFPLHVDYSWVI 298 (301)
T ss_dssp SSCCC-------
T ss_pred CChhHHHHhcCC
Confidence 899999998873
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=1.7e-22 Score=172.20 Aligned_cols=143 Identities=22% Similarity=0.254 Sum_probs=129.4
Q ss_pred cCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHH
Q 040751 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEG-PNGKTALHAAA 228 (405)
Q Consensus 150 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~a~ 228 (405)
+..|.||||+|+..|+.+++++|++ |++++ ..+..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~ 119 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 119 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4578999999999999999999999 99887 788999999999999999999999999999999988 78999999999
Q ss_pred hcCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhcccccccccccCCccHHHHHH
Q 040751 229 MKFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQSASNIADKDRKMTALHLAA 308 (405)
Q Consensus 229 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~~~~~~~~~~g~t~l~~A~ 308 (405)
..++. +++++|++.+.+ ++.++..|.||||+|+..+. ...+.|||++|+
T Consensus 120 ~~g~~--~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~~----------------------------~~~~~~~l~~a~ 168 (244)
T 3ui2_A 120 GYVRP--EVVEALVELGAD-IEVEDERGLTALELAREILK----------------------------TTPKGNPMQFGR 168 (244)
T ss_dssp HTTCH--HHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHHT----------------------------TCCCSSHHHHHH
T ss_pred HcCCH--HHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHHh----------------------------ccCCCCHHHHHH
Confidence 99999 999999998766 78899999999999986430 026789999999
Q ss_pred hcCCHHHHHHHHhcCCc
Q 040751 309 GQGNAEIVDAIISKNPE 325 (405)
Q Consensus 309 ~~~~~~~v~~Ll~~~~~ 325 (405)
..|+.+++++|++++.+
T Consensus 169 ~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 169 RIGLEKVINVLEGQVFE 185 (244)
T ss_dssp HHHHHHHHHHHHHHHEE
T ss_pred HcChHHHHHHHHHhccc
Confidence 99999999999986433
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=7.4e-23 Score=172.08 Aligned_cols=130 Identities=23% Similarity=0.173 Sum_probs=113.3
Q ss_pred cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhc-
Q 040751 97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKE- 175 (405)
Q Consensus 97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~- 175 (405)
..+..|.||||+|+..|+.++|++|+++|+++ +..+..|.||||+|+..|+.+++++|++.
T Consensus 68 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 129 (222)
T 3ehr_A 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV------------------NGLDKAGSTALYWACHGGHKDIVEMLFTQP 129 (222)
T ss_dssp HHEEEESCHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHTTST
T ss_pred ccccccccccccccccCcHHHHHHHHhCCCCc------------------cccCCCCCCHHHHHHHcCCHHHHHHHHcCC
Confidence 34677899999999999999999999999885 47888999999999999999999999998
Q ss_pred CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751 176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN 247 (405)
Q Consensus 176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~ 247 (405)
|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..+.. ++++.|+..+..
T Consensus 130 g~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~--~~l~~l~~~~~~ 198 (222)
T 3ehr_A 130 NIELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACA--SLLKKKQGTDAV 198 (222)
T ss_dssp TCCCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHH--HHHC--------
T ss_pred CCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHH--HHHHHHhccchh
Confidence 88887 7889999999999999999999999999999999999999999999999888 899988887654
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=4.6e-22 Score=174.37 Aligned_cols=140 Identities=21% Similarity=0.143 Sum_probs=119.0
Q ss_pred ccchhhHhhhhhhhhcccHHHHHHHHHhCCccccc------ccCCCChHHHHHHHh---CcHHHHHHHHHccCCCCCchh
Q 040751 63 RNTILHINIISKERENVSTEFVEEILEKCPSLLLQ------VNAKGDTPLHVAAKF---GHSGIVTFLVERAKLPQHENE 133 (405)
Q Consensus 63 g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~ 133 (405)
..++|+.| +..++.+.++.|++ .+.+++. .+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 151 ~~~~L~~A--~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv----- 219 (301)
T 2b0o_E 151 EPQRLWTA--ICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL----- 219 (301)
T ss_dssp CHHHHHHH--HHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-----
T ss_pred hHHHHhhh--hhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-----
Confidence 34679999 99999998888865 3555665 588999999999997 8999999999999985
Q ss_pred HHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 040751 134 ELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSV 213 (405)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~ 213 (405)
+..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..|+.+++++|+++|++
T Consensus 220 -------------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~- 284 (301)
T 2b0o_E 220 -------------DAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAG- 284 (301)
T ss_dssp -------------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-
T ss_pred -------------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-
Confidence 4789999999999999999999999999999998 7899999999999999999999999999986
Q ss_pred cccCCCCCcHHHHHHhcCCc
Q 040751 214 SHEGPNGKTALHAAAMKFDL 233 (405)
Q Consensus 214 ~~~~~~~~t~L~~a~~~~~~ 233 (405)
.|.||||+|+.+|..
T Consensus 285 -----~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 -----TFAFPLHVDYSWVIS 299 (301)
T ss_dssp -----TTSSCCC--------
T ss_pred -----CCCChhHHHHhcCCc
Confidence 478999999988764
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=2.7e-22 Score=168.60 Aligned_cols=138 Identities=19% Similarity=0.154 Sum_probs=113.6
Q ss_pred hhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHHhCcHHHHHHHHHc-cCCCCCchhHHh
Q 040751 58 LTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAKFGHSGIVTFLVER-AKLPQHENEELE 136 (405)
Q Consensus 58 ~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~ 136 (405)
..+..|.||||+| +..|+.+++++|++ .+..++..+..|.||||+|+..|+.++|++|+++ |++++
T Consensus 68 ~~~~~g~t~L~~A--~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~------- 134 (222)
T 3ehr_A 68 EQAESIDNPLHEA--AKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN------- 134 (222)
T ss_dssp HHEEEESCHHHHH--HHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-------
T ss_pred ccccccccccccc--cccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-------
Confidence 5566799999999 99999999999987 4677888999999999999999999999999999 88754
Q ss_pred hhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 040751 137 SGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHE 216 (405)
Q Consensus 137 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~ 216 (405)
..+..|.||||+|+..|+.+++++|+++|++++ ..+..|.|||++|+..++.++++.|+..|+.....
T Consensus 135 -----------~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~ 202 (222)
T 3ehr_A 135 -----------QQNKLGDTALHAAAWKGYADIVQLLLAKGARTD-LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS 202 (222)
T ss_dssp -----------CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSC-CCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred -----------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence 789999999999999999999999999999998 78999999999999999999999999999988776
Q ss_pred CCCC
Q 040751 217 GPNG 220 (405)
Q Consensus 217 ~~~~ 220 (405)
+..+
T Consensus 203 ~~~~ 206 (222)
T 3ehr_A 203 NAED 206 (222)
T ss_dssp ----
T ss_pred chhh
Confidence 5443
No 102
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=6e-21 Score=136.63 Aligned_cols=93 Identities=33% Similarity=0.512 Sum_probs=81.1
Q ss_pred CCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCc
Q 040751 101 KGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYR 180 (405)
Q Consensus 101 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~ 180 (405)
+|+||||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 62 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC------------------cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 4789999999999999999999998874 4788889999999999999999999999999987
Q ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 040751 181 YSANNDGKTPLYMAAESRSSDMVLALLENSTS 212 (405)
Q Consensus 181 ~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~ 212 (405)
..+..|.||||+|+..|+.+++++|+++|++
T Consensus 63 -~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp -CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7788899999999999999999999998874
No 103
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=2.5e-21 Score=146.57 Aligned_cols=114 Identities=18% Similarity=0.197 Sum_probs=104.6
Q ss_pred cCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHh
Q 040751 150 NNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAM 229 (405)
Q Consensus 150 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~ 229 (405)
+..|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY 82 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence 4568899999999999999999999999987 788899999999999999999999999999999999999999999999
Q ss_pred cCCccHHHHHHHHHhhhhhhhhcccCCCCHHHHHHHcC
Q 040751 230 KFDLVDTALRKLLEKKENLIKETDQYGWTPIHYAAYHG 267 (405)
Q Consensus 230 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~ 267 (405)
.++. +++++|++.+.+ ++.++..|.||+++|...+
T Consensus 83 ~~~~--~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 83 EGHV--SCVKLLLSKGAD-KTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HTCH--HHHHHHHHTTCC-TTCCCTTSCCHHHHCCCHH
T ss_pred cCCH--HHHHHHHHcCCC-CCCcCCCCCCHHHHhCCHH
Confidence 9999 999999998766 7889999999999995543
No 104
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=5.3e-21 Score=142.91 Aligned_cols=109 Identities=27% Similarity=0.340 Sum_probs=97.7
Q ss_pred cccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcC
Q 040751 97 QVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKED 176 (405)
Q Consensus 97 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 176 (405)
..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g 65 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN------------------ARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS------------------CCCSSSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------CcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence 468889999999999999999999999998854 77889999999999999999999999999
Q ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHH
Q 040751 177 PDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTAL 224 (405)
Q Consensus 177 ~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L 224 (405)
++++ ..+..|.||||+|+..++.+++++|+++|++++..+..+.+|-
T Consensus 66 ~~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 66 ADVN-ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp CCTT-CCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred CCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9987 7888999999999999999999999999999999988888773
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=1.5e-20 Score=168.29 Aligned_cols=147 Identities=13% Similarity=0.094 Sum_probs=117.8
Q ss_pred cCCCChHHHHHHHh-CcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhcc--CCCchHhHHHHhCCCHHHHHHHHhc
Q 040751 99 NAKGDTPLHVAAKF-GHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTN--NEKNTALHEAVCHKNVDVVKILTKE 175 (405)
Q Consensus 99 ~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~t~L~~A~~~~~~~~~~~Ll~~ 175 (405)
...+.|+||.|+.. |+.+++++|+++|++++ ..+ ..|.||||+|+..|+.+++++|+++
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn------------------~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~ 257 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVN------------------WVNGGQDNATPLIQATAANSLLACEFLLQN 257 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT------------------CCCTTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCC------------------ccccccCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 34566899999999 99999999999999865 555 7899999999999999999999999
Q ss_pred CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhh--hhhcc
Q 040751 176 DPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENL--IKETD 253 (405)
Q Consensus 176 ~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~--~~~~~ 253 (405)
|++++ ..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++. +++++|+..+... ....+
T Consensus 258 Gadvn-~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~--~iv~lLl~~~~~~~~~~~~~ 334 (368)
T 3jue_A 258 GANVN-QADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANA--DIVTLLRLAKMREAEAAQGQ 334 (368)
T ss_dssp TCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHC---------
T ss_pred CCCCC-CCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCH--HHHHHHHHcCCCcccccccC
Confidence 99998 7899999999999999999999999999999999999999999999999999 9999999876332 12334
Q ss_pred cCCCCHHHHHHHc
Q 040751 254 QYGWTPIHYAAYH 266 (405)
Q Consensus 254 ~~~~t~l~~a~~~ 266 (405)
..+.|++..+...
T Consensus 335 ~~~~t~l~i~~~~ 347 (368)
T 3jue_A 335 AGDETYLDIFRDF 347 (368)
T ss_dssp -------------
T ss_pred CCCCCHHHHHHHH
Confidence 5566776665543
No 106
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=5.7e-20 Score=172.86 Aligned_cols=142 Identities=19% Similarity=0.103 Sum_probs=116.6
Q ss_pred CChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHh---CCCHHHHHHHHhcCCC
Q 040751 102 GDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVC---HKNVDVVKILTKEDPD 178 (405)
Q Consensus 102 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~---~~~~~~~~~Ll~~~~~ 178 (405)
..+.||.|+..|+.+.|+.|+++|++++.... ....+..|.||||+|+. .|+.+++++|+++|++
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~------------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~ 199 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH 199 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBC------------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCC------------CcccccccchHHHHHHHhcccccHHHHHHHHHcCCC
Confidence 34789999999999999999999998651100 00127789999999966 8999999999999999
Q ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhhhhhhcccCCCC
Q 040751 179 YRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKENLIKETDQYGWT 258 (405)
Q Consensus 179 ~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 258 (405)
++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++. +++++|++.+.+. +. +
T Consensus 200 vn-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--~~~~~Ll~~ga~~-~~------~ 269 (497)
T 3lvq_E 200 LD-AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHK--ECEELLEQAQAGT-FA------F 269 (497)
T ss_dssp TT-CCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCH--HHHHHHHHTCC------------
T ss_pred CC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH--HHHHHHHHhCCCC-CC------C
Confidence 98 7899999999999999999999999999999999999999999999999999 9999999988763 32 5
Q ss_pred HHHHHHH
Q 040751 259 PIHYAAY 265 (405)
Q Consensus 259 ~l~~a~~ 265 (405)
|+|.+..
T Consensus 270 ~~h~~~~ 276 (497)
T 3lvq_E 270 PLHVDYS 276 (497)
T ss_dssp -------
T ss_pred cceeecc
Confidence 6666554
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=6.4e-20 Score=158.88 Aligned_cols=181 Identities=21% Similarity=0.227 Sum_probs=115.1
Q ss_pred ccCCCChHHHHHHHhCcHHHHHHHHHccCCCCC----chhHHh--hhhhHHHHHhhh-------ccCCCchHhHHHHhCC
Q 040751 98 VNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQH----ENEELE--SGVGAARQMIKM-------TNNEKNTALHEAVCHK 164 (405)
Q Consensus 98 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~~~--~~~~~~~~~~~~-------~~~~g~t~L~~A~~~~ 164 (405)
.|..+.++++.+...|+....+++......... ...... ..+...+..... ......++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 567788899999999988776666543322110 000000 000000000000 0111235778888888
Q ss_pred CHHHHHHHHhcCCCCcc-----ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHH
Q 040751 165 NVDVVKILTKEDPDYRY-----SANNDGKTPLYMAAES---RSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDT 236 (405)
Q Consensus 165 ~~~~~~~Ll~~~~~~~~-----~~~~~g~t~L~~a~~~---~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~ 236 (405)
+.+.++.+++.|.+++. ..+..|.||||+|+.. |+.+++++|+++|++++.+|..|.||||+|+..|+. +
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~--~ 219 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA--E 219 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH--H
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH--H
Confidence 88888888888777532 2366788888888887 778888888888888888888888888888888877 7
Q ss_pred HHHHHHHhhhhhhhhcccCCCCHHHHHHHcChhhhhhhccccchhHHHHhhccc
Q 040751 237 ALRKLLEKKENLIKETDQYGWTPIHYAAYHGMYWINRFYGNYGTVNLLLETDQS 290 (405)
Q Consensus 237 ~v~~Ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~Ll~~~~~ 290 (405)
+++.|++.+.+ ++.++..|.||||+|+..| +.+++++|++.+++
T Consensus 220 ~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~---------~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 220 CLKLLLRGKAS-IEIANESGETPLDIAKRLK---------HEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT---------CHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCC-CCCccCCCCCHHHHHHHcC---------CHHHHHHHHHcCCC
Confidence 88777776654 5666666666666666665 33566666666543
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=4.6e-20 Score=173.47 Aligned_cols=136 Identities=21% Similarity=0.152 Sum_probs=113.2
Q ss_pred cchhhHhhhhhhhhcccHHHHHHHHHhCCcccccc------cCCCChHHHHHHH---hCcHHHHHHHHHccCCCCCchhH
Q 040751 64 NTILHINIISKERENVSTEFVEEILEKCPSLLLQV------NAKGDTPLHVAAK---FGHSGIVTFLVERAKLPQHENEE 134 (405)
Q Consensus 64 ~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~g~t~L~~A~~---~g~~~~v~~Ll~~~~~~~~~~~~ 134 (405)
.+.||.| +..|+.+.++.|++ .+.+++.. +..|.||||+|+. .|+.++|++|+++|+++
T Consensus 133 ~~~L~~A--~~~g~~~~v~~ll~----~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v------ 200 (497)
T 3lvq_E 133 PQRLWTA--ICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL------ 200 (497)
T ss_dssp HHHHHHH--HHHTCHHHHHHHHH----TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT------
T ss_pred HHHHHHH--HhccCHHHHHHHHh----hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC------
Confidence 3679999 99999999999987 35666655 8889999999977 99999999999999985
Q ss_pred HhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 040751 135 LESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVS 214 (405)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~ 214 (405)
+.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..|+.+++++|+++|++++
T Consensus 201 ------------n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 201 ------------DAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp ------------TCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCS-CCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred ------------CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 4889999999999999999999999999999998 789999999999999999999999999999987
Q ss_pred ccCCCCCcHHHHHHhc
Q 040751 215 HEGPNGKTALHAAAMK 230 (405)
Q Consensus 215 ~~~~~~~t~L~~a~~~ 230 (405)
. +|+|.++.+
T Consensus 268 ~------~~~h~~~~~ 277 (497)
T 3lvq_E 268 A------FPLHVDYSW 277 (497)
T ss_dssp ----------------
T ss_pred C------Ccceeeccc
Confidence 6 567766543
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=2e-19 Score=155.85 Aligned_cols=130 Identities=17% Similarity=0.108 Sum_probs=117.1
Q ss_pred ChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhC---CCHHHHHHHHhcCCCC
Q 040751 103 DTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCH---KNVDVVKILTKEDPDY 179 (405)
Q Consensus 103 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~~~~~ 179 (405)
.++|+.|+..|+.+.++.+++.|.+.+... .++..+..|.||||+|+.. |+.+++++|+++|+++
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~------------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i 198 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKI------------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL 198 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBC------------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhc------------cccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc
Confidence 479999999999999999999998753110 0223477899999999999 8999999999999999
Q ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHHhhhh
Q 040751 180 RYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKFDLVDTALRKLLEKKEN 247 (405)
Q Consensus 180 ~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~~~~~ 247 (405)
+ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++. ++++.|++.+..
T Consensus 199 n-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~--~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 199 D-KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE--HCEELLTQALSG 263 (278)
T ss_dssp T-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHHTT
T ss_pred c-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCH--HHHHHHHHcCCC
Confidence 8 7899999999999999999999999999999999999999999999999999 999999998764
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.82 E-value=8.7e-20 Score=130.53 Aligned_cols=92 Identities=34% Similarity=0.478 Sum_probs=86.6
Q ss_pred CCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHhcC
Q 040751 152 EKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAAAMKF 231 (405)
Q Consensus 152 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a~~~~ 231 (405)
+|.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 47899999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhhh
Q 040751 232 DLVDTALRKLLEKKE 246 (405)
Q Consensus 232 ~~~~~~v~~Ll~~~~ 246 (405)
+. +++++|++.+.
T Consensus 80 ~~--~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HL--EVVKLLLEAGA 92 (93)
T ss_dssp CH--HHHHHHHHTTC
T ss_pred CH--HHHHHHHHcCC
Confidence 99 99999998763
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=5.5e-20 Score=164.71 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=114.6
Q ss_pred cccchhhHhhhhhh-hhcccHHHHHHHHHhCCccccccc--CCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhh
Q 040751 62 TRNTILHINIISKE-RENVSTEFVEEILEKCPSLLLQVN--AKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESG 138 (405)
Q Consensus 62 ~g~~~L~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~ 138 (405)
.+.++||+| +.. ++.+++++|++ .+.+++..+ ..|.||||+|+..|+.++|++|+++|+++
T Consensus 198 ~~~t~L~~A--a~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv---------- 261 (368)
T 3jue_A 198 HPGALLFRA--SGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV---------- 261 (368)
T ss_dssp CHHHHHHHH--TSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------
T ss_pred CCCcHHHHH--HHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC----------
Confidence 466899999 888 99999999877 467778777 88999999999999999999999999985
Q ss_pred hhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---Ccc
Q 040751 139 VGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTS---VSH 215 (405)
Q Consensus 139 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~---~~~ 215 (405)
+..|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+..+.. ...
T Consensus 262 --------n~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~-~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~ 332 (368)
T 3jue_A 262 --------NQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332 (368)
T ss_dssp --------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------
T ss_pred --------CCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence 4889999999999999999999999999999998 7899999999999999999999999987733 334
Q ss_pred cCCCCCcHHHHHHhc
Q 040751 216 EGPNGKTALHAAAMK 230 (405)
Q Consensus 216 ~~~~~~t~L~~a~~~ 230 (405)
.+..+.|+++.+...
T Consensus 333 ~~~~~~t~l~i~~~~ 347 (368)
T 3jue_A 333 GQAGDETYLDIFRDF 347 (368)
T ss_dssp ---------------
T ss_pred cCCCCCCHHHHHHHH
Confidence 455667777655543
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=3e-19 Score=133.29 Aligned_cols=109 Identities=24% Similarity=0.290 Sum_probs=100.2
Q ss_pred hccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 040751 148 MTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALHAA 227 (405)
Q Consensus 148 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~~a 227 (405)
.+|..|.||||+|+..|+.+++++|+++|++++ ..+..|.||||+|+..++.+++++|+++|++++.++..|.||||+|
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 468899999999999999999999999999988 7889999999999999999999999999999999999999999999
Q ss_pred HhcCCccHHHHHHHHHhhhhhhhhcccCCCCHH
Q 040751 228 AMKFDLVDTALRKLLEKKENLIKETDQYGWTPI 260 (405)
Q Consensus 228 ~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~l 260 (405)
+..++. +++++|++.+.+ ++.++..+.+|-
T Consensus 83 ~~~~~~--~~~~~Ll~~ga~-~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 KKNGHH--EIVKLLDAKGAD-VNARSWGSSHHH 112 (115)
T ss_dssp HTTTCH--HHHHHHHTTSSS-HHHHSCCCC---
T ss_pred HHCCCH--HHHHHHHHcCCC-CCcCCccccccc
Confidence 999999 999999988776 788888888874
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=1.1e-17 Score=123.47 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=67.0
Q ss_pred cccccCCCChHHHHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHh
Q 040751 95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTK 174 (405)
Q Consensus 95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~ 174 (405)
....+.+|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|++
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i------------------~~~d~~g~tpLh~A~~~~~~~~v~~Ll~ 78 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV------------------AAKDKNGSTPLHLAARNGHLEVVKLLLE 78 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT------------------TCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC------------------CccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 4456677778888888888888888888777764 3667777777777777777777777777
Q ss_pred cCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 040751 175 EDPDYRYSANNDGKTPLYMAAESRSSDMVLAL 206 (405)
Q Consensus 175 ~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~L 206 (405)
+|++++ ..+..|.||||+|+..|+.+++++|
T Consensus 79 ~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 79 AGADVX-AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred cCCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 777776 5677777777777777777777765
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=4.7e-17 Score=120.08 Aligned_cols=93 Identities=26% Similarity=0.270 Sum_probs=84.1
Q ss_pred hhhccCCCchHhHHHHhCCCHHHHHHHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 040751 146 IKMTNNEKNTALHEAVCHKNVDVVKILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALLENSTSVSHEGPNGKTALH 225 (405)
Q Consensus 146 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~g~~~~~~~~~~~t~L~ 225 (405)
..-.+.+|.|+||+|+..|+.+++++|++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 34567889999999999999999999999999988 77899999999999999999999999999999999999999999
Q ss_pred HHHhcCCccHHHHHHH
Q 040751 226 AAAMKFDLVDTALRKL 241 (405)
Q Consensus 226 ~a~~~~~~~~~~v~~L 241 (405)
+|+..++. +++++|
T Consensus 96 ~A~~~~~~--~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNE--DLAEIL 109 (110)
T ss_dssp HHHHHTCH--HHHHHH
T ss_pred HHHHcCCH--HHHHHh
Confidence 99999998 888765
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=79.74 E-value=0.61 Score=25.10 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=20.4
Q ss_pred hhcCCHHHHHHhhcCCCchhhhhHH
Q 040751 27 QSQMDPKFFKAAADGNVEPFKDMAR 51 (405)
Q Consensus 27 ~~~~~~~l~~A~~~g~~~~v~~ll~ 51 (405)
...++..++.|+..||++.++.|-.
T Consensus 10 I~aiEQqiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 10 KDAIRKQMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4456778999999999999988743
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=48.44 E-value=66 Score=27.88 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=87.8
Q ss_pred HHHHhhcCCCchhhhhHHHH---HHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCccc-ccccCCCChHHHHH
Q 040751 34 FFKAAADGNVEPFKDMAREK---IESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLL-LQVNAKGDTPLHVA 109 (405)
Q Consensus 34 l~~A~~~g~~~~v~~ll~~~---~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~t~L~~A 109 (405)
|-.....++.+..+.+++.- .-....|..|...+.-. ...+..+....+++.+. +..+ -..+..|.-.+..+
T Consensus 41 lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQkl--le~~~~~~~~~i~~~i~--g~~~~l~~~~~G~rvvQk~ 116 (351)
T 3gvo_A 41 IQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKF--FEFGSLDQKLALATRIR--GHVLPLALQMYGCRVIQKA 116 (351)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHH--HHHCCHHHHHHHHHHHT--TCHHHHHTSTTHHHHHHHH
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHH--HhhCCHHHHHHHHHHHH--hhHHHHhhCHHhHHHHHHH
Confidence 33444455555444444432 22225555566666665 55555544444444221 1111 23455566666666
Q ss_pred HHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHHHHHhcCC--CCccccCCCC
Q 040751 110 AKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVKILTKEDP--DYRYSANNDG 187 (405)
Q Consensus 110 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~--~~~~~~~~~g 187 (405)
......+-...+++.-... ..--..|.+|...+..+...+..+..+.+++.-. -........|
T Consensus 117 le~~~~~~~~~i~~el~~~---------------~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G 181 (351)
T 3gvo_A 117 LESISSDQQSEMVKELDGH---------------VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 181 (351)
T ss_dssp HHHSCHHHHHHHHGGGTTC---------------HHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTH
T ss_pred HHhCCHHHHHHHHHHhhhh---------------HHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHh
Confidence 6666555444444321110 0011345566665555555555544444443311 1111234556
Q ss_pred CcHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCcHHHHHHhcCCccHHHHHHHHH
Q 040751 188 KTPLYMAAESRSSDMVLALLEN---STSVSHEGPNGKTALHAAAMKFDLVDTALRKLLE 243 (405)
Q Consensus 188 ~t~L~~a~~~~~~~~v~~Ll~~---g~~~~~~~~~~~t~L~~a~~~~~~~~~~v~~Ll~ 243 (405)
...+..+......+-...+++. ....-..|..|...+......+.. +....++.
T Consensus 182 ~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~--~~~~~i~~ 238 (351)
T 3gvo_A 182 CRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRP--EDKSKIVS 238 (351)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCH--HHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCch--hhHHHHHH
Confidence 5566555555544332222221 112223566677777777776665 54444444
No 117
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=38.22 E-value=54 Score=25.20 Aligned_cols=21 Identities=10% Similarity=0.047 Sum_probs=15.1
Q ss_pred hHhHHHHhCCCHHHHHHHHhc
Q 040751 155 TALHEAVCHKNVDVVKILTKE 175 (405)
Q Consensus 155 t~L~~A~~~~~~~~~~~Ll~~ 175 (405)
-+...|..+|..+..+-+++.
T Consensus 120 eA~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 120 LAYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHH
Confidence 345667778888888877754
No 118
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=26.15 E-value=1.8e+02 Score=25.70 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=42.9
Q ss_pred HHHHHhCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhc--cCCCchHhHHHHhCCCHHHHHHHHh
Q 040751 107 HVAAKFGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMT--NNEKNTALHEAVCHKNVDVVKILTK 174 (405)
Q Consensus 107 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~ 174 (405)
+..+..|+...|+.-+..|.++...-...+- .+++.. -..|.|.+|.|++..+.+++-.|+.
T Consensus 27 c~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~------~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 27 CVGVVEGDLAAIEAYKSSGGDIARQLTADEV------RLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTCCCCHHHH------HHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHcCChhHHHHHHhcCCchhcccCHHHH------HHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 4556789999999999998887533221111 112222 2468899999999999999988886
No 119
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=25.80 E-value=1.8e+02 Score=26.65 Aligned_cols=162 Identities=11% Similarity=0.048 Sum_probs=79.7
Q ss_pred hhhcCCHHHHHHhhcCCCchhhhhHHHHHHHh-hhhccccchhhHhhhhhhhhc---------cc-HHHHHHHHHhCCcc
Q 040751 26 SQSQMDPKFFKAAADGNVEPFKDMAREKIESL-LTAKTRNTILHINIISKEREN---------VS-TEFVEEILEKCPSL 94 (405)
Q Consensus 26 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~a~~~~~~~~---------~~-~~~l~~~~~~~~~~ 94 (405)
|..-+...|...++.|+++....+++.-.... ..+..-++.|..|. +..+.. +. .+++.+ +...+..
T Consensus 25 pe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c-~~~~~~~~~~~~~~l~~A~~lf~~-M~~~G~~ 102 (501)
T 4g26_A 25 PEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVC-SLAEAATESSPNPGLSRGFDIFKQ-MIVDKVV 102 (501)
T ss_dssp HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH-TTCCCCSSSSCCHHHHHHHHHHHH-HHHTTCC
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HhCCchhhhhhcchHHHHHHHHHH-HHHhCCC
Confidence 33445566788889999988777776543322 11211233333320 332221 11 222222 2222222
Q ss_pred cccccCCCChHHHHHHHhCcHHHHHHHHH----ccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHHHHH
Q 040751 95 LLQVNAKGDTPLHVAAKFGHSGIVTFLVE----RAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVDVVK 170 (405)
Q Consensus 95 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~ 170 (405)
.+.. ...+.+...+..|..+-+..+++ .|..++.. .-.+.+...++.|+.+-+.
T Consensus 103 Pd~~--tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~--------------------tyn~lI~~~~~~g~~~~A~ 160 (501)
T 4g26_A 103 PNEA--TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR--------------------SYGPALFGFCRKGDADKAY 160 (501)
T ss_dssp CCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH--------------------HHHHHHHHHHHTTCHHHHH
T ss_pred CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--------------------eehHHHHHHHHCCCHHHHH
Confidence 1111 11245677788888776666654 34333200 0123445556777765444
Q ss_pred ----HHHhcCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCc
Q 040751 171 ----ILTKEDPDYRYSANNDGKTPLYMAAESRSSDMVLALL----ENSTSVS 214 (405)
Q Consensus 171 ----~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll----~~g~~~~ 214 (405)
.+.+.|..++ ...-.+.+..++..|+.+-+..++ +.|..++
T Consensus 161 ~l~~~M~~~G~~Pd---~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps 209 (501)
T 4g26_A 161 EVDAHMVESEVVPE---EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS 209 (501)
T ss_dssp HHHHHHHHTTCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred HHHHHHHhcCCCCC---HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence 4445566654 122345666777888866554444 3454443
No 120
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=24.27 E-value=2.9e+02 Score=24.50 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHhcCCHHHHHHHHhcCCcccccccCCCChHHHHHHHhccccccccCCCCCHHHHHHHhCCcHHHHHHHhc
Q 040751 307 AAGQGNAEIVDAIISKNPECYELVDNRGWNFLHYAVVTRSLINEGDAMGNTPLHVLAAVRRNEFYDVMIRN 377 (405)
Q Consensus 307 A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~g~t~L~~a~~~~~~~~v~~Ll~~ 377 (405)
.+..|+...|+..+..|++... ..|....++.++.. + -..|.|-+|+|++..+.+++-.|+..
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r-----~lt~~e~~lln~~~--a-f~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIAR-----QLTADEVRLLNRPS--A-FDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTC-----CCCHHHHHHHCCTT--T-CCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhc-----ccCHHHHHHhCCCc--c-cccCchhhhhhhhhhhhhHHHHhhhc
Confidence 3456888889988888887622 24666666655422 2 35799999999999999999999973
No 121
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.14 E-value=2.7e+02 Score=21.32 Aligned_cols=129 Identities=13% Similarity=0.071 Sum_probs=69.7
Q ss_pred HHHHHHhhcCCCchhhhhHHHHHHHhhhhccccchhhHhhhhhhhhcccHHHHHHHHHhCCcccccccCCCChHHHHHHH
Q 040751 32 PKFFKAAADGNVEPFKDMAREKIESLLTAKTRNTILHINIISKERENVSTEFVEEILEKCPSLLLQVNAKGDTPLHVAAK 111 (405)
Q Consensus 32 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~ 111 (405)
..|-.|+..|+++.-..+.+.. .+...+.-|--++ ...|+.++++...+. .+ |. ...+.+...
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~A-L~~gn~~lAe~cy~~---~~------D~--~~L~~Ly~~ 72 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEA-LAQGNASLAEMIYQT---QH------SF--DKLSFLYLV 72 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHH-HHTTCHHHHHHHHHH---TT------CH--HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHH-HHcCChHHHHHHHHH---hC------CH--HHHHHHHHH
Confidence 4577888888888877665542 1111233332222 566676666665542 11 11 133444455
Q ss_pred hCcHHHHHHHHHccCCCCCchhHHhhhhhHHHHHhhhccCCCchHhHHHHhCCCHH-HHHHHHhcCCCCccccCCCCCcH
Q 040751 112 FGHSGIVTFLVERAKLPQHENEELESGVGAARQMIKMTNNEKNTALHEAVCHKNVD-VVKILTKEDPDYRYSANNDGKTP 190 (405)
Q Consensus 112 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~-~~~~Ll~~~~~~~~~~~~~g~t~ 190 (405)
.|+.+-++.+.+- -....+-..+++.+...|+++ +++.|.+.|.- .-+
T Consensus 73 tg~~e~L~kla~i----------------------A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~---------~eA 121 (177)
T 3mkq_B 73 TGDVNKLSKMQNI----------------------AQTREDFGSMLLNTFYNNSTKERSSIFAEGGSL---------PLA 121 (177)
T ss_dssp HTCHHHHHHHHHH----------------------HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCH---------HHH
T ss_pred hCCHHHHHHHHHH----------------------HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCCh---------HHH
Confidence 6666665555432 122233456677777777754 55666543221 124
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 040751 191 LYMAAESRSSDMVLALLE 208 (405)
Q Consensus 191 L~~a~~~~~~~~v~~Ll~ 208 (405)
...|-.+|..+..+.+++
T Consensus 122 ~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 122 YAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHH
Confidence 456667888888877764
Done!