BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040753
(198 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana
At5g01750
pdb|2Q4M|A Chain A, Ensemble Refinement Of The Crystal Structure Of Protein
From Arabidopsis Thaliana At5g01750
Length = 217
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 149 VVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNR 196
+VA+ RK + V LG D +++V P+VD +FI +LV + +NR
Sbjct: 167 IVAQXHRKHTVQS--VFLGKDNFSVTVYPNVDYAFIASLVVILDDVNR 212
>pdb|2E5V|A Chain A, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
pdb|2E5V|B Chain B, Crystal Structure Of L-Aspartate Oxidase From
Hyperthermophilic Archaeon Sulfolobus Tokodaii
Length = 472
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 22 VWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKG--------SNEVYLMDLRGNVLFTILR 73
V++ + ++G G + NENGE + NYD +G S +Y+ L+G+ +F L
Sbjct: 222 VFLLTETLRGEGAQIINENGERF--LFNYDKRGELAPRDILSRAIYIEMLKGHKVFIDLS 279
Query: 74 RVRVFGR 80
++ F R
Sbjct: 280 KIEDFER 286
>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
pdb|2E4G|B Chain B, Rebh With Bound L-Trp
pdb|2OAL|A Chain A, Rebh With Bound Fad
pdb|2OAL|B Chain B, Rebh With Bound Fad
pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The Apo Form
pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The Apo Form
pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
Complex
pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase From
Lechevalieria Aerocolonigenes, The L-Tryptophan With Fad
Complex
Length = 550
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 128 SATGRTKSAALFKIIDCR--RGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVD 180
+ATGR A LF +DC RG+++ + M + S LL D + V PH D
Sbjct: 233 TATGRVFDADLF--VDCSGFRGLLINKAMEEPFLDMSDHLLNDSAVATQV-PHDD 284
>pdb|1WP5|A Chain A, Crystal Structure Of The C-Terminal Domain Of Dna
Topoisomerase Iv
Length = 323
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 18/143 (12%)
Query: 47 IDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDN--DGSNLNKEKPSFEVT 104
+D + G NE++L+ G L+ V + G G KG N +G + + +T
Sbjct: 147 VDVHLTDGXNELFLVTHNGYALWFDESEVSIVGVRAAGVKGXNLKEGDYIVSGQL---IT 203
Query: 105 KKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGV 164
K E +++ + K KL R K RGVV+ ++ SG
Sbjct: 204 SKDESIVVATQRGAVKKXKLTEFEKATRAK-----------RGVVILRELKANPHRISGF 252
Query: 165 LLGDDVLTLSVEPHVDRSFIMAL 187
++ D T+ ++ ++SFI +
Sbjct: 253 VVAQDSDTIYLQ--TEKSFIETI 273
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 67 VLFTILRRVRVFGRLWRGYKGDNDGSNLNKEK-PSFEVTKKGEITLLSNNEASCYKLKLE 125
V + L +++V W G GD + K + +T + Y++++E
Sbjct: 34 VKYHELAKIKVKFNQWSGTSGDTYNVYFDGVKVATGAITGSQTTASFEYGQGGLYQMEIE 93
Query: 126 AASATGRTKSAAL 138
A ATG +KSA +
Sbjct: 94 ACDATGCSKSAPV 106
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 67 VLFTILRRVRVFGRLWRGYKGDNDGSNLNKEK-PSFEVTKKGEITLLSNNEASCYKLKLE 125
V + L +++V W G GD + K + +T + Y++++E
Sbjct: 34 VKYHELAKIKVKFNQWSGTSGDTYNVYFDGVKVATGAITGSQTTASFEYGQGGLYQMEIE 93
Query: 126 AASATGRTKSAAL 138
A ATG +KSA +
Sbjct: 94 ACDATGCSKSAPV 106
>pdb|2H36|X Chain X, Structure Of Orf14 From Sulfolobus Islandicus Filamentous
Virus (Sifv)
Length = 112
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 8 PISVEAASKRESFTVWMKSLVMQGNGCTV----FNENGEIVYRIDNYDNKGSNEVYLMDL 63
P+ V RE + S + NG T+ ++E+ +I+Y+++ K N++Y+ ++
Sbjct: 45 PLKVTEEEYRELLGNYDSSNSVSSNGITIDQYTYDEDDDIMYKLEFTYRKEDNKIYIYEV 104
Query: 64 RG 65
+G
Sbjct: 105 QG 106
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 67 VLFTILRRVRVFGRLWRGYKGDNDGSNLNKEK-PSFEVTKKGEITLLSNNEASCYKLKLE 125
V + L +++V W G GD + K + +T + Y++++E
Sbjct: 34 VKYHELAKIKVKFNQWSGTSGDTYNVYFDGVKVATGAITGSQTTASFEYGQGGLYQMEIE 93
Query: 126 AASATGRTKSAAL 138
A ATG +KSA +
Sbjct: 94 ACDATGCSKSAPV 106
>pdb|2JSY|A Chain A, Solution Structure Of Tpx In The Oxidized State
pdb|2JSZ|A Chain A, Solution Structure Of Tpx In The Reduced State
Length = 167
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 18 ESFTVWMKSLVMQGNGCTVFNENGEIVY 45
E+F V++K L + V +ENG++VY
Sbjct: 115 EAFGVYIKELRLLARSVFVLDENGKVVY 142
>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
pdb|3FBG|B Chain B, Crystal Structure Of A Putative Arginate Lyase From
Staphylococcus Haemolyticus
Length = 346
Score = 26.6 bits (57), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 31 GNGCTVFNENGEIVYRIDNYDNKGSNEVYLM 61
GN T+FN+ G+IVY + D GSN Y +
Sbjct: 75 GNEVTMFNQ-GDIVYYSGSPDQNGSNAEYQL 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,512,749
Number of Sequences: 62578
Number of extensions: 221167
Number of successful extensions: 451
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 21
length of query: 198
length of database: 14,973,337
effective HSP length: 94
effective length of query: 104
effective length of database: 9,091,005
effective search space: 945464520
effective search space used: 945464520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)