Query 040753
Match_columns 198
No_of_seqs 106 out of 424
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04525 Tub_2: Tubby C 2; In 100.0 1.2E-40 2.6E-45 272.2 18.7 161 14-190 10-187 (187)
2 COG4894 Uncharacterized conser 100.0 3.5E-33 7.6E-38 216.8 8.4 151 18-196 6-158 (159)
3 PF03803 Scramblase: Scramblas 99.4 6.4E-11 1.4E-15 98.6 17.7 165 17-195 21-218 (221)
4 COG4894 Uncharacterized conser 98.0 1.6E-05 3.4E-10 62.7 6.0 70 14-86 26-96 (159)
5 PF04525 Tub_2: Tubby C 2; In 97.0 0.0027 5.8E-08 51.7 6.8 72 14-87 35-113 (187)
6 KOG0621 Phospholipid scramblas 96.5 0.072 1.6E-06 46.8 12.9 157 32-195 99-278 (292)
7 PF03803 Scramblase: Scramblas 95.8 0.026 5.6E-07 46.8 6.1 85 15-108 84-178 (221)
8 PF13860 FlgD_ig: FlgD Ig-like 74.8 5.9 0.00013 27.7 4.1 17 33-49 28-44 (81)
9 PF04790 Sarcoglycan_1: Sarcog 67.2 9.8 0.00021 33.0 4.6 49 18-66 103-154 (264)
10 PF15529 Toxin_49: Putative to 63.7 9.3 0.0002 27.8 3.1 20 32-51 30-49 (89)
11 KOG3950 Gamma/delta sarcoglyca 58.3 8.9 0.00019 33.1 2.6 23 30-52 137-159 (292)
12 COG5436 Predicted integral mem 57.6 40 0.00087 27.3 6.0 39 34-74 70-109 (182)
13 KOG0621 Phospholipid scramblas 56.7 25 0.00055 31.0 5.3 45 32-76 188-238 (292)
14 PRK12816 flgG flagellar basal 53.0 20 0.00044 30.8 4.0 43 27-70 95-138 (264)
15 PRK15393 NUDIX hydrolase YfcD; 52.0 29 0.00063 27.8 4.6 55 33-88 11-73 (180)
16 cd05828 Sortase_D_4 Sortase D 51.3 22 0.00047 26.9 3.6 33 54-86 64-96 (127)
17 cd06166 Sortase_D_5 Sortase D 51.2 24 0.00052 26.6 3.8 32 55-86 68-99 (126)
18 TIGR03784 marine_sortase sorta 50.0 26 0.00056 28.4 4.0 31 55-85 112-143 (174)
19 PRK12691 flgG flagellar basal 46.1 39 0.00084 28.9 4.7 43 27-70 95-138 (262)
20 PRK06655 flgD flagellar basal 44.3 33 0.00071 29.0 3.9 46 27-73 100-145 (225)
21 PRK12694 flgG flagellar basal 43.9 31 0.00066 29.6 3.7 43 27-70 95-138 (260)
22 PF06903 VirK: VirK protein; 43.1 98 0.0021 23.0 5.8 38 14-52 43-81 (100)
23 PF02974 Inh: Protease inhibit 42.7 1.2E+02 0.0027 21.9 6.3 31 55-88 61-91 (99)
24 TIGR02488 flgG_G_neg flagellar 41.8 33 0.00071 29.3 3.6 43 27-70 93-136 (259)
25 PRK00122 rimM 16S rRNA-process 39.4 84 0.0018 25.0 5.4 17 33-49 107-123 (172)
26 PF06788 UPF0257: Uncharacteri 39.2 2.5E+02 0.0054 24.1 12.7 63 35-110 52-116 (236)
27 smart00634 BID_1 Bacterial Ig- 38.0 89 0.0019 21.9 4.9 39 34-72 24-69 (92)
28 PRK12693 flgG flagellar basal 37.9 50 0.0011 28.2 4.1 43 27-70 95-138 (261)
29 TIGR02150 IPP_isom_1 isopenten 37.1 55 0.0012 25.5 4.0 52 34-86 1-61 (158)
30 TIGR02273 16S_RimM 16S rRNA pr 35.9 82 0.0018 24.8 4.8 9 34-42 103-111 (165)
31 PF09008 Head_binding: Head bi 35.3 1.3E+02 0.0027 22.9 5.3 43 24-72 62-104 (114)
32 PF12690 BsuPI: Intracellular 34.8 28 0.00061 24.6 1.8 17 33-49 27-43 (82)
33 PRK13828 rimM 16S rRNA-process 33.7 1.1E+02 0.0024 24.1 5.3 18 33-50 87-104 (161)
34 PF07680 DoxA: TQO small subun 33.3 37 0.0008 26.5 2.3 38 33-76 32-69 (133)
35 PRK13239 alkylmercury lyase; P 32.7 79 0.0017 26.5 4.3 32 34-72 62-96 (206)
36 cd00028 B_lectin Bulb-type man 32.7 2E+02 0.0042 21.0 6.5 39 32-71 65-103 (116)
37 PRK12813 flgD flagellar basal 32.3 77 0.0017 26.8 4.3 16 57-72 127-142 (223)
38 PRK14591 rimM 16S rRNA-process 32.1 1.2E+02 0.0025 24.3 5.1 13 60-72 124-136 (169)
39 COG4998 Predicted endonuclease 31.6 94 0.002 25.4 4.4 34 136-179 23-56 (209)
40 KOG0291 WD40-repeat-containing 31.2 3.6E+02 0.0078 27.3 9.0 62 24-86 17-92 (893)
41 TIGR00156 conserved hypothetic 30.8 2.4E+02 0.0053 21.7 6.5 21 32-52 73-93 (126)
42 PRK14592 rimM 16S rRNA-process 30.7 1.3E+02 0.0028 23.8 5.2 17 33-49 99-115 (165)
43 PRK14590 rimM 16S rRNA-process 30.5 1.4E+02 0.003 23.9 5.4 30 33-72 104-134 (171)
44 PF06357 Omega-toxin: Omega-at 30.4 44 0.00096 20.1 1.8 11 38-48 27-37 (37)
45 cd05830 Sortase_D_5 Sortase D 29.9 79 0.0017 24.1 3.7 33 54-86 68-100 (137)
46 PF12396 DUF3659: Protein of u 29.6 83 0.0018 21.4 3.3 38 35-72 14-57 (64)
47 PF08269 Cache_2: Cache domain 29.3 11 0.00023 26.8 -1.2 43 27-69 51-94 (95)
48 cd00004 Sortase Sortases are c 28.4 92 0.002 23.2 3.8 26 55-80 68-93 (128)
49 cd03676 Nudix_hydrolase_3 Memb 28.1 1.5E+02 0.0033 23.3 5.2 58 31-88 4-72 (180)
50 PF05593 RHS_repeat: RHS Repea 27.3 1.3E+02 0.0029 17.6 3.7 30 37-69 1-30 (38)
51 cd06165 Sortase_A_1 Sortase A 26.4 97 0.0021 23.1 3.6 32 55-86 67-98 (127)
52 smart00108 B_lectin Bulb-type 25.9 2.6E+02 0.0056 20.2 6.8 39 31-70 63-101 (114)
53 PRK12634 flgD flagellar basal 25.9 1.4E+02 0.0031 25.1 4.8 19 55-73 123-141 (221)
54 PF04170 NlpE: NlpE N-terminal 25.7 2.4E+02 0.0052 19.8 5.8 12 57-68 72-83 (87)
55 KOG1693 emp24/gp25L/p24 family 25.4 2E+02 0.0044 24.1 5.5 33 119-159 50-82 (209)
56 PF07661 MORN_2: MORN repeat v 25.3 1E+02 0.0022 15.3 2.7 16 32-47 3-18 (22)
57 PF12142 PPO1_DWL: Polyphenol 25.0 56 0.0012 21.6 1.7 16 33-49 11-26 (54)
58 PRK06655 flgD flagellar basal 24.7 2.6E+02 0.0056 23.5 6.2 18 33-50 129-146 (225)
59 PRK12643 flgF flagellar basal 24.6 67 0.0014 26.9 2.6 41 27-69 80-121 (209)
60 PRK12812 flgD flagellar basal 23.8 2.6E+02 0.0057 24.2 6.2 46 28-73 115-160 (259)
61 PF13585 CHU_C: C-terminal dom 23.7 52 0.0011 23.2 1.6 18 33-50 30-47 (87)
62 cd02885 IPP_Isomerase Isopente 23.7 87 0.0019 24.4 3.0 54 34-87 4-65 (165)
63 PLN02552 isopentenyl-diphospha 23.2 1.7E+02 0.0037 25.0 4.9 57 31-88 22-92 (247)
64 PRK12633 flgD flagellar basal 23.1 1.7E+02 0.0037 24.7 4.8 35 34-68 133-170 (230)
65 PRK05842 flgD flagellar basal 23.0 1.3E+02 0.0029 26.6 4.2 17 56-72 168-184 (295)
66 PF14539 DUF4442: Domain of un 23.0 2.1E+02 0.0045 21.5 4.9 19 139-158 113-131 (132)
67 COG1370 Prefoldin, molecular c 22.7 2.5E+02 0.0054 22.5 5.3 41 135-179 114-154 (155)
68 PRK10893 lipopolysaccharide ex 22.7 2.2E+02 0.0047 23.3 5.2 43 33-75 49-101 (192)
69 PRK12819 flgG flagellar basal 22.7 1.2E+02 0.0027 25.8 3.9 38 32-70 99-136 (257)
70 PRK10053 hypothetical protein; 22.5 3.7E+02 0.008 20.8 6.4 20 56-75 77-96 (130)
71 PF11906 DUF3426: Protein of u 22.4 2.1E+02 0.0045 21.7 4.9 32 40-71 65-104 (149)
72 cd06535 CIDE_N_CAD CIDE_N doma 22.4 59 0.0013 23.0 1.5 32 28-61 35-67 (77)
73 PF13511 DUF4124: Domain of un 22.4 76 0.0016 20.4 2.0 17 32-48 14-30 (60)
74 PRK12640 flgF flagellar basal 22.2 1E+02 0.0022 26.3 3.3 43 27-70 80-123 (246)
75 TIGR01076 sortase_fam LPXTG-si 22.0 1.5E+02 0.0032 22.5 3.9 55 31-86 41-98 (136)
76 PRK02939 lipoprotein; Reviewed 21.8 5.2E+02 0.011 22.2 13.5 40 35-74 52-93 (236)
77 KOG4499 Ca2+-binding protein R 21.7 4.2E+02 0.0091 23.2 6.8 35 32-72 215-250 (310)
78 PRK10523 lipoprotein involved 21.6 1.7E+02 0.0036 25.0 4.5 36 41-76 81-117 (234)
79 PF03413 PepSY: Peptidase prop 21.6 2.1E+02 0.0046 17.8 4.1 30 40-69 29-62 (64)
80 PF13098 Thioredoxin_2: Thiore 21.4 80 0.0017 22.3 2.2 19 33-51 85-103 (112)
81 TIGR03406 FeS_long_SufT probab 20.8 69 0.0015 26.0 1.9 21 31-53 33-53 (174)
82 PF04076 BOF: Bacterial OB fol 20.7 3.6E+02 0.0077 19.9 6.4 40 14-54 33-72 (103)
83 PF11141 DUF2914: Protein of u 20.2 1.4E+02 0.003 20.1 3.1 21 53-73 43-63 (66)
84 PRK12818 flgG flagellar basal 20.1 1.4E+02 0.0031 25.4 3.8 43 27-70 95-138 (256)
No 1
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=100.00 E-value=1.2e-40 Score=272.19 Aligned_cols=161 Identities=37% Similarity=0.536 Sum_probs=103.4
Q ss_pred CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEc-ccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCC
Q 040753 14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDN-YDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDG 91 (198)
Q Consensus 14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg-~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~ 91 (198)
+++|++|+||||++++++|+|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.+ ++++ |++|.+++.+
T Consensus 10 ~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~-w~i~~~~~~~ 88 (187)
T PF04525_consen 10 SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPT-WEIYRGGGSE 88 (187)
T ss_dssp -SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------E-EEEEETT---
T ss_pred CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceE-EEEEECCCCc
Confidence 788999999999999999999999999999999999 899999999999999999999999999 9999 9999987432
Q ss_pred CCCCCccCeEEEeee--------EEEEEcCC-------CceeeEEEEeeeccCCCCcCccceeEEEeCCCCeEEEEEEee
Q 040753 92 SNLNKEKPSFEVTKK--------GEITLLSN-------NEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRK 156 (198)
Q Consensus 92 ~~~~~~~~~f~vk~~--------~~v~l~~~-------~~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk 156 (198)
.++++|++|++ +.+|+... .+.++|+|+ |+|++++ |+|++. +|++||||+||
T Consensus 89 ----~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~-------G~~~~~~-~~I~~~-~g~~VA~i~rk 155 (187)
T PF04525_consen 89 ----GKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIK-------GNFWDRS-FTIYDS-GGRVVAEISRK 155 (187)
T ss_dssp ----GGGEEEEEE----------EEEEET--T----------SEEEE-------S-TTTT---EEEEC-C--EEEEEEE-
T ss_pred ----cCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEE-------EEecCcE-EEEEEc-CCCEEEEEecc
Confidence 24689999988 67777621 267799999 9999999 999975 69999999998
Q ss_pred eecCCCceeeecceEEEEEeCCCCHHHHHHHHHH
Q 040753 157 QSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTV 190 (198)
Q Consensus 157 ~~~~~~~~~~~~dty~l~V~pgvD~a~i~aLvv~ 190 (198)
+.. ++++.|+|+|.|+|+||+|++||||||||
T Consensus 156 ~~~--k~~~~~~dty~l~V~pg~D~~lv~alvvi 187 (187)
T PF04525_consen 156 YSS--KKWFSGRDTYTLTVAPGVDQALVVALVVI 187 (187)
T ss_dssp -----------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred cce--eeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence 886 88888999999999999999999999986
No 2
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-33 Score=216.81 Aligned_cols=151 Identities=19% Similarity=0.275 Sum_probs=134.8
Q ss_pred eEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCCCCCCC
Q 040753 18 ESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDGSNLNK 96 (198)
Q Consensus 18 ~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~~~~~~ 96 (198)
.+|.|++|..++ |+.|.|||..|+.+|+|+|+++++++.+++.|++|.+|.+|++|++ ++|+ |++..|+
T Consensus 6 ~tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~-yeI~d~~-------- 75 (159)
T COG4894 6 ITLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPR-YEISDGG-------- 75 (159)
T ss_pred HhHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccce-eEEEcCC--------
Confidence 467888887666 7999999999999999999999999999999999999999999999 9999 9999986
Q ss_pred ccCeEEEeeeEEEEEcCCC-ceeeEEEEeeeccCCCCcCccceeEEEeCCCCeEEEEEEeeeecCCCceeeecceEEEEE
Q 040753 97 EKPSFEVTKKGEITLLSNN-EASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSV 175 (198)
Q Consensus 97 ~~~~f~vk~~~~v~l~~~~-~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk~~~~~~~~~~~~dty~l~V 175 (198)
..+|.++|+++|+-..-- ...+|+++ ||+|+.+ |++.+| ++++|||+|||++ |+|||.|+|
T Consensus 76 -g~~~~vrKK~tf~Rdk~e~d~~~~eih-------GNi~d~e-fkl~dg--~~~~aeVsKkwf~-------~rdTY~l~v 137 (159)
T COG4894 76 -GTVCEVRKKVTFSRDKFEIDGLNWEIH-------GNIWDDE-FKLTDG--ENVRAEVSKKWFS-------WRDTYHLQV 137 (159)
T ss_pred -CCEEEEEEEEEEEeeeEEEcCCCeEEe-------cceeceE-EEEecC--CceehhheeeeEe-------ccceEEEEE
Confidence 458999999887632100 22369999 9999999 999997 5799999999999 999999999
Q ss_pred eCCCCHHHHHHHHHHhhcccc
Q 040753 176 EPHVDRSFIMALVTVYGLMNR 196 (198)
Q Consensus 176 ~pgvD~a~i~aLvv~lD~i~~ 196 (198)
+|+.|.++|+|+++|||++.+
T Consensus 138 apde~a~lii~i~VaLD~v~~ 158 (159)
T COG4894 138 APDEDALLIIAIAVALDMVLY 158 (159)
T ss_pred cCchhhHHHHHHHHHHHHHhc
Confidence 999999999999999999875
No 3
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=99.37 E-value=6.4e-11 Score=98.64 Aligned_cols=165 Identities=14% Similarity=0.114 Sum_probs=113.6
Q ss_pred eeEEEEEEEEeEE-------eCCCeEEEeCCCCEEEEEEcccCC---------CCCeEEEEcCCCCeEEEEEeeee-ec-
Q 040753 17 RESFTVWMKSLVM-------QGNGCTVFNENGEIVYRIDNYDNK---------GSNEVYLMDLRGNVLFTILRRVR-VF- 78 (198)
Q Consensus 17 ~~~ltv~~K~~~~-------sg~~ftV~D~~G~~vyrVdg~~~s---------~~~~~~l~D~~G~~Ll~i~~k~l-~~- 78 (198)
--.+.|+++.-.+ ..+.|.|+|.+|+.+|.+....-. .+-+..++|..|+++++|+|..- ..
T Consensus 21 ~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C 100 (221)
T PF03803_consen 21 LDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSC 100 (221)
T ss_pred CCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceec
Confidence 3566677766432 237999999999999988655211 13456789999999999999764 32
Q ss_pred -----CeeeEEEeCCCCCCCCCCccCeEEEeee-------EEEEEcCCCceeeEEEEeeeccCCCCcCccceeEEEeCCC
Q 040753 79 -----GRLWRGYKGDNDGSNLNKEKPSFEVTKK-------GEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRR 146 (198)
Q Consensus 79 -----~~~w~~~~g~~~~~~~~~~~~~f~vk~~-------~~v~l~~~~~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~ 146 (198)
.+ .+++.+. ++++-+|+.+ ++|+-+.+ ..-++|++-+..- +.+.+.. |.|++. +
T Consensus 101 ~~~~~~~-~~V~~p~--------g~~iG~I~q~~~~~~~~f~I~d~~~--~~~~~I~gp~~~~-~~~~~~~-F~I~~~-~ 166 (221)
T PF03803_consen 101 CPCCLQE-MEVESPP--------GNLIGSIRQPFSCCRPNFDIFDANG--NPIFTIKGPCCCC-SCCCDWE-FEIKDP-N 166 (221)
T ss_pred cccccee-EEEecCC--------CcEEEEEEEcCcccceEEEEEECCC--ceEEEEeCCccee-cccccee-eeeecc-c
Confidence 34 5554432 2455555554 44444432 4568888211100 1246777 999997 5
Q ss_pred CeEEEEEEeeeecCCCceeeecceEEEEEeCCCCH---HHHHHHHHHhhccc
Q 040753 147 GVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDR---SFIMALVTVYGLMN 195 (198)
Q Consensus 147 g~~VAev~rk~~~~~~~~~~~~dty~l~V~pgvD~---a~i~aLvv~lD~i~ 195 (198)
|+.||+|+|+|..-.....-..|.|.|+..+..|. |+++|.++.||.++
T Consensus 167 ~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~ 218 (221)
T PF03803_consen 167 GQEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMY 218 (221)
T ss_pred CcEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhh
Confidence 79999999999852233445689999999988876 88999999999875
No 4
>COG4894 Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=1.6e-05 Score=62.68 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=61.9
Q ss_pred CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEe
Q 040753 14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYK 86 (198)
Q Consensus 14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~ 86 (198)
...++++.|.=+.++. +|.|+|+|+.|..++.++.+.+++..+..|.|++|+ ++.+++|.. ++++ |++--
T Consensus 26 ~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk-~e~d~ 96 (159)
T COG4894 26 RDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDK-FEIDG 96 (159)
T ss_pred CCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeee-EEEcC
Confidence 4567899998776776 889999999999999999999999999999999999 889999987 8788 87654
No 5
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=96.97 E-value=0.0027 Score=51.70 Aligned_cols=72 Identities=14% Similarity=0.119 Sum_probs=42.5
Q ss_pred CCceeEEEEEE-EEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCC----eEEEEEeee-e-ecCeeeEEEe
Q 040753 14 ASKRESFTVWM-KSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGN----VLFTILRRV-R-VFGRLWRGYK 86 (198)
Q Consensus 14 ~~~~~~ltv~~-K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~----~Ll~i~~k~-l-~~~~~w~~~~ 86 (198)
.+....|+|.. +.+++ ++...++|.+|++++.+..+.+++..+..+.++.+. ++++|+++- + ..+. -.+|.
T Consensus 35 ~~G~~vf~V~g~~~~s~-~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~-~~~f~ 112 (187)
T PF04525_consen 35 ENGNVVFRVDGGKFFSI-GKKRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDS-FDVFL 112 (187)
T ss_dssp TTS-EEEEEE--SCTTB-TTEEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE-----------EEEEE
T ss_pred CCCCEEEEEEEecccCC-CCEEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcc-eeEEE
Confidence 55678999988 66666 679999999999999999999999999999999998 599999993 3 4444 56666
Q ss_pred C
Q 040753 87 G 87 (198)
Q Consensus 87 g 87 (198)
.
T Consensus 113 ~ 113 (187)
T PF04525_consen 113 P 113 (187)
T ss_dssp T
T ss_pred e
Confidence 4
No 6
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=96.55 E-value=0.072 Score=46.82 Aligned_cols=157 Identities=13% Similarity=0.054 Sum_probs=87.5
Q ss_pred CCeEEEeCCCCEEEEEEcccC---------CCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCCCCCC---Ccc
Q 040753 32 NGCTVFNENGEIVYRIDNYDN---------KGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDGSNLN---KEK 98 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~---------s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~~~~~---~~~ 98 (198)
+.|.|.|.+|+.+|.+-.... ..+=...++|.-|+++++++|+.. .... +.+-...+... ...
T Consensus 99 NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~----c~~~~~~~~~v~~p~~~ 174 (292)
T KOG0621|consen 99 NRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSA----CALCLAQEIEIQSPPMG 174 (292)
T ss_pred cEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccc----cccccccEEEEEcCCCc
Confidence 899999999998885433221 124567888999999999999975 3321 11100000000 001
Q ss_pred CeEEEeeeE-----EEEEcCCCceeeEEEEee--eccCCCCcCccceeEEEeCCCCeEEEEEEeeeecCCCceeeecceE
Q 040753 99 PSFEVTKKG-----EITLLSNNEASCYKLKLE--AASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVL 171 (198)
Q Consensus 99 ~~f~vk~~~-----~v~l~~~~~~~~~~v~~~--~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk~~~~~~~~~~~~dty 171 (198)
.+-.+...+ .+.+.+......|.|++- +.. +-+.+.. +.|..-++|.+|++|.|+|.....+-.-..|+|
T Consensus 175 ~lG~v~q~~~~~~~~f~i~~~~~~~v~~v~gp~~~~~--~~~~d~~-f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f 251 (292)
T KOG0621|consen 175 LLGKVLQTWGCVNPNFHLWDRDGNLVFLVEGPRCCTF--ACCDDTV-FFPKTTDNGRIVGSISRKWAGLVREAFTDADTF 251 (292)
T ss_pred eEEEEEEeeccccceEEEEcccceeEEEEEcCceeEE--EeecCcc-eeEEEcCCCeEEEEEeecccchhhhheecccee
Confidence 121121111 133332212234555510 000 1133344 444433368999999999996434454567888
Q ss_pred EEEEeCCCCH---HHHHHHHHHhhccc
Q 040753 172 TLSVEPHVDR---SFIMALVTVYGLMN 195 (198)
Q Consensus 172 ~l~V~pgvD~---a~i~aLvv~lD~i~ 195 (198)
.|..--..|. ++++|-++-||.+.
T Consensus 252 ~v~FPldLdvk~kavllga~flID~~~ 278 (292)
T KOG0621|consen 252 VVHFPLDLDVKLKALLLGSTFLIDYMS 278 (292)
T ss_pred eEecCCcCCHHHHhhhhhheeeEEEEE
Confidence 8877666665 77888888888653
No 7
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=95.77 E-value=0.026 Score=46.82 Aligned_cols=85 Identities=18% Similarity=0.094 Sum_probs=56.0
Q ss_pred CceeEEEEEEEEeEEeC------CCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee----ecCeeeEE
Q 040753 15 SKRESFTVWMKSLVMQG------NGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR----VFGRLWRG 84 (198)
Q Consensus 15 ~~~~~ltv~~K~~~~sg------~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l----~~~~~w~~ 84 (198)
...+.+++.+ ...+.. ...+|.+.+|+.+-+|.....-++.++.|+|++|+++++|+.... .....|++
T Consensus 84 ~g~~vl~i~R-p~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I 162 (221)
T PF03803_consen 84 YGREVLTIER-PFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEI 162 (221)
T ss_pred CCCEEEEEEc-CCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceeccccceeeee
Confidence 3456677654 344322 567788888888888888765568888888888888888887643 12233555
Q ss_pred EeCCCCCCCCCCccCeEEEeeeEE
Q 040753 85 YKGDNDGSNLNKEKPSFEVTKKGE 108 (198)
Q Consensus 85 ~~g~~~~~~~~~~~~~f~vk~~~~ 108 (198)
+..+ +..+-+|+|+|.
T Consensus 163 ~~~~--------~~~vg~I~k~w~ 178 (221)
T PF03803_consen 163 KDPN--------GQEVGSITKKWS 178 (221)
T ss_pred eccc--------CcEEEEEEEecC
Confidence 5532 256677777754
No 8
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=74.80 E-value=5.9 Score=27.66 Aligned_cols=17 Identities=29% Similarity=0.591 Sum_probs=8.8
Q ss_pred CeEEEeCCCCEEEEEEc
Q 040753 33 GCTVFNENGEIVYRIDN 49 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg 49 (198)
..+|+|++|++|+++.-
T Consensus 28 ~v~I~d~~G~~V~t~~~ 44 (81)
T PF13860_consen 28 TVTIYDSNGQVVRTISL 44 (81)
T ss_dssp EEEEEETTS-EEEEEEE
T ss_pred EEEEEcCCCCEEEEEEc
Confidence 35555555555555554
No 9
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=67.24 E-value=9.8 Score=33.00 Aligned_cols=49 Identities=14% Similarity=0.189 Sum_probs=31.6
Q ss_pred eEEEEEEEE-eEEeCCCeEEEeC-CCCEEEEEEcccCCC-CCeEEEEcCCCC
Q 040753 18 ESFTVWMKS-LVMQGNGCTVFNE-NGEIVYRIDNYDNKG-SNEVYLMDLRGN 66 (198)
Q Consensus 18 ~~ltv~~K~-~~~sg~~ftV~D~-~G~~vyrVdg~~~s~-~~~~~l~D~~G~ 66 (198)
..|.|-++. ...+.++|.|+|. +|+++|.+|..-..+ .+++.+..+.|-
T Consensus 103 ~~l~v~~~~~v~~~~~~F~V~d~~~g~~lFsad~~~v~v~~~~lrv~~~~G~ 154 (264)
T PF04790_consen 103 SRLVVGPDGTVEAQSNRFEVKDPRDGKTLFSADRPEVVVGAEKLRVTGPEGA 154 (264)
T ss_pred ceEEECCCccEEEecCeEEEEcCCCCceEEEecCCceEEeeeeEEecCCccE
Confidence 345555554 4445577888887 788888887765443 466666666666
No 10
>PF15529 Toxin_49: Putative toxin 49
Probab=63.72 E-value=9.3 Score=27.83 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.4
Q ss_pred CCeEEEeCCCCEEEEEEccc
Q 040753 32 NGCTVFNENGEIVYRIDNYD 51 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~ 51 (198)
.+|++||++|.++-||++..
T Consensus 30 t~Y~tY~~~G~~~kr~r~~G 49 (89)
T PF15529_consen 30 TSYTTYDEDGMIVKRYRGSG 49 (89)
T ss_pred cceeEEcCCCcEeEEeeccC
Confidence 68999999999777776653
No 11
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=58.35 E-value=8.9 Score=33.11 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=11.8
Q ss_pred eCCCeEEEeCCCCEEEEEEcccC
Q 040753 30 QGNGCTVFNENGEIVYRIDNYDN 52 (198)
Q Consensus 30 sg~~ftV~D~~G~~vyrVdg~~~ 52 (198)
.+++|.|.|.+|.+.|.+|..-.
T Consensus 137 ~~~~Fev~~~dgk~LFsad~dEv 159 (292)
T KOG3950|consen 137 QCKRFEVNDVDGKLLFSADEDEV 159 (292)
T ss_pred hhceeEEecCCCcEEEEecccee
Confidence 34555555555555555555433
No 12
>COG5436 Predicted integral membrane protein [Function unknown]
Probab=57.62 E-value=40 Score=27.27 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=21.1
Q ss_pred eEEEe-CCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEee
Q 040753 34 CTVFN-ENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRR 74 (198)
Q Consensus 34 ftV~D-~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k 74 (198)
+-.|| ++|-+.+.-.| ---...+.++|++|+.+++|...
T Consensus 70 ~C~fdvsegpvri~a~~--nvpyWSvsiyds~~nn~fS~ND~ 109 (182)
T COG5436 70 FCRFDVSEGPVRIEAKG--NVPYWSVSIYDSNGNNFFSINDR 109 (182)
T ss_pred eeEeeccCCcEEEEecC--CCceEEEEEEcCCCCceEEeccc
Confidence 33455 35544333333 22345567777777777777654
No 13
>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]
Probab=56.75 E-value=25 Score=30.99 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=36.3
Q ss_pred CCeEEEeCCCCEEEEEEccc---C---CCCCeEEEEcCCCCeEEEEEeeee
Q 040753 32 NGCTVFNENGEIVYRIDNYD---N---KGSNEVYLMDLRGNVLFTILRRVR 76 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~---~---s~~~~~~l~D~~G~~Ll~i~~k~l 76 (198)
-.|+|.|..++.+|+|+|.. + +......++..+|..+..|-+|..
T Consensus 188 ~~f~i~~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~ 238 (292)
T KOG0621|consen 188 PNFHLWDRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWA 238 (292)
T ss_pred ceEEEEcccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeeccc
Confidence 58999999999999999982 2 224557778889999999999954
No 14
>PRK12816 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=52.98 E-value=20 Score=30.85 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=33.1
Q ss_pred eEEeCCCe-EEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 27 LVMQGNGC-TVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 27 ~~~sg~~f-tV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.++|++| .|.+.+|+.+|+=+|.+ .+...-.|.+++|.+|+.
T Consensus 95 lAI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~Lvt~~G~~vl~ 138 (264)
T PRK12816 95 VAIEGEGFFKILMPDGTYAYTRDGSF-KIDANGQLVTSNGYRLLP 138 (264)
T ss_pred EEECCCcEEEEEcCCCCeEEeeCCCe-eECCCCCEECCCCCEecc
Confidence 45577655 77678998889988864 666666799999999984
No 15
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=52.05 E-value=29 Score=27.78 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=34.7
Q ss_pred CeEEEeCCCCEEEEEEc------ccCCCCCeEEEEcCCCCeEEEEEeee-e-ecCeeeEEEeCC
Q 040753 33 GCTVFNENGEIVYRIDN------YDNKGSNEVYLMDLRGNVLFTILRRV-R-VFGRLWRGYKGD 88 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg------~~~s~~~~~~l~D~~G~~Ll~i~~k~-l-~~~~~w~~~~g~ 88 (198)
=+.|+|++|+++-++.- ......--+.++|.+|+.|+. ++.. - ..+..|..+-|+
T Consensus 11 ~~~~~d~~~~~~g~~~~~~~~~~~~~h~~~~v~v~~~~g~iLL~-~R~~~~~~~pg~~~~~pGG 73 (180)
T PRK15393 11 WVDIVNENNEVIAQASREQMRAQCLRHRATYIVVHDGMGKILVQ-RRTETKDFLPGMLDATAGG 73 (180)
T ss_pred EEEEECCCCCEeeEEEHHHHhhCCCceEEEEEEEECCCCeEEEE-EeCCCCCCCCCcccccCCC
Confidence 38999999999998721 122234566778999988873 4432 2 333327666654
No 16
>cd05828 Sortase_D_4 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-4. These sortases recognize a unique sorting signal (LPXTA) and they constitute a specialized sorting pathway found in bacilli. Their substrates are predicted to be predominantly enzymes such as 5'-nucleotidases, glycosyl hydrolase, and subtilase.
Probab=51.35 E-value=22 Score=26.89 Aligned_cols=33 Identities=12% Similarity=0.001 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCeEEEEEeeeeecCeeeEEEe
Q 040753 54 GSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYK 86 (198)
Q Consensus 54 ~~~~~~l~D~~G~~Ll~i~~k~l~~~~~w~~~~ 86 (198)
.++++.+.+..+.-.+.+.++....+..++++.
T Consensus 64 ~Gd~i~v~~~~~~~~Y~V~~~~~v~~~~~~~~~ 96 (127)
T cd05828 64 PGDIITLQTLGGTYTYRVTSTRIVDADDTSVLA 96 (127)
T ss_pred CCCEEEEEECCEEEEEEEeeEEEECccccEEcc
Confidence 378888888866677777666554444366555
No 17
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=51.22 E-value=24 Score=26.62 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCeEEEEEeeeeecCeeeEEEe
Q 040753 55 SNEVYLMDLRGNVLFTILRRVRVFGRLWRGYK 86 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k~l~~~~~w~~~~ 86 (198)
++++.+.|..+.--+++.+.....+..+.++.
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~~~~v~~~~~~~~~ 99 (126)
T cd06166 68 GDEIKVTTKNGTYKYKITSIFVVEPTDTDVLN 99 (126)
T ss_pred CCEEEEEECCEEEEEEEEEEEEECCCcceEec
Confidence 77788887766666666655544444355444
No 18
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=50.05 E-value=26 Score=28.37 Aligned_cols=31 Identities=10% Similarity=-0.094 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCeE-EEEEeeeeecCeeeEEE
Q 040753 55 SNEVYLMDLRGNVL-FTILRRVRVFGRLWRGY 85 (198)
Q Consensus 55 ~~~~~l~D~~G~~L-l~i~~k~l~~~~~w~~~ 85 (198)
++++.|.+.+|+.. +.+.......+..+.+.
T Consensus 112 GD~I~v~~~~g~~~~Y~V~~~~iV~~~d~~v~ 143 (174)
T TIGR03784 112 GDVIRLQTPDGQWQSYQVTATRVVDESETGLD 143 (174)
T ss_pred CCEEEEEECCCeEEEEEEeEEEEECCccceec
Confidence 78888888888764 77776655444324443
No 19
>PRK12691 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=46.10 E-value=39 Score=28.91 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=32.4
Q ss_pred eEEeCCCe-EEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 27 LVMQGNGC-TVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 27 ~~~sg~~f-tV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.+.|++| .|.+.+|+.+|+=+|.+ .+...-.|.+++|.+|+.
T Consensus 95 lAI~G~GfF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vl~ 138 (262)
T PRK12691 95 LAIQGRGYFQIQLPDGETAYTRAGAF-NRSADGQIVTSDGYPVQP 138 (262)
T ss_pred EEEcCCcEEEEEcCCCCEEEeeCCCe-eECCCCCEECCCCCEeEe
Confidence 45567655 66667888889988864 566666799999999984
No 20
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=44.30 E-value=33 Score=28.97 Aligned_cols=46 Identities=20% Similarity=0.235 Sum_probs=27.8
Q ss_pred eEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEe
Q 040753 27 LVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILR 73 (198)
Q Consensus 27 ~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~ 73 (198)
..+.++.+.+.+ .+..-|+++=..-.-.-.+.|+|++|+.+-++.-
T Consensus 100 V~~~~~~~~~~~-~~~~~~~~~l~~~a~~vti~I~D~~G~~Vrt~~l 145 (225)
T PRK06655 100 VLVPGDTVLVGT-GGTTPFGVELPSAADNVTVTITDSAGQVVRTIDL 145 (225)
T ss_pred EEEecceEEecC-CCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEec
Confidence 345566665533 3455666553222234668888999998877754
No 21
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=43.90 E-value=31 Score=29.58 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=32.7
Q ss_pred eEEeCCCe-EEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 27 LVMQGNGC-TVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 27 ~~~sg~~f-tV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.+.|++| .|.+.+|+..|+=+|.+ .+...-.|.+++|.+|+.
T Consensus 95 ~AI~G~GfF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~Vl~ 138 (260)
T PRK12694 95 VAINGQGFFQVLMPDGTTAYTRDGSF-QTNAQGQLVTSSGYPLQP 138 (260)
T ss_pred EEEcCCcEEEEEcCCCCeEEeeCCCc-eECCCCCEECCCCCEecc
Confidence 45567665 67678888889988864 666666799999999986
No 22
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=43.14 E-value=98 Score=22.99 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCceeEEEEEEE-EeEEeCCCeEEEeCCCCEEEEEEcccC
Q 040753 14 ASKRESFTVWMK-SLVMQGNGCTVFNENGEIVYRIDNYDN 52 (198)
Q Consensus 14 ~~~~~~ltv~~K-~~~~sg~~ftV~D~~G~~vyrVdg~~~ 52 (198)
.-.+-.|.|..- .++|+..+|||- ..|++++.+=.|-.
T Consensus 43 g~~i~ayrI~~D~tlaFSd~HfTv~-~~g~Pi~qf~rY~i 81 (100)
T PF06903_consen 43 GLRIDAYRITPDGTLAFSDTHFTVD-NDGKPIQQFIRYQI 81 (100)
T ss_pred ccceeeEEEeCCCeEEEecceEEEC-CCCCceEeEEEEEE
Confidence 444677777776 799999999994 44999988877743
No 23
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=42.68 E-value=1.2e+02 Score=21.91 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCeEEEEEeeeeecCeeeEEEeCC
Q 040753 55 SNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGD 88 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k~l~~~~~w~~~~g~ 88 (198)
++.+.|+|++|+.|..+.+.- -.. |+....+
T Consensus 61 gd~l~L~d~~G~~v~~f~~~~--~g~-~~g~~~~ 91 (99)
T PF02974_consen 61 GDGLVLTDADGSVVAFFYRSG--DGR-FEGQTPD 91 (99)
T ss_dssp TTEEEEE-TTS-EEEEEEEEC--TTE-EEEEECC
T ss_pred CCEEEEECCCCCEEEEEEccC--Cee-EEeEcCC
Confidence 578999999999999988763 234 7777754
No 24
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=41.80 E-value=33 Score=29.31 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=31.9
Q ss_pred eEEeCCCe-EEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 27 LVMQGNGC-TVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 27 ~~~sg~~f-tV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.+.|++| .|.+.+|+.+|+=+|.+ .+...-.|.+++|.+|+.
T Consensus 93 ~AI~G~GfF~V~~~~g~~~yTR~G~F-~~d~~G~Lvt~~G~~Vl~ 136 (259)
T TIGR02488 93 LAIEGEGFFQVLMPDGTTAYTRDGAF-KINAEGQLVTSNGYPLQP 136 (259)
T ss_pred EEEcCCcEEEEEcCCCCeEEeeCCce-EECCCCCEECCCCCEecC
Confidence 45567655 66667888889888864 666666788999999884
No 25
>PRK00122 rimM 16S rRNA-processing protein RimM; Provisional
Probab=39.36 E-value=84 Score=25.01 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=7.9
Q ss_pred CeEEEeCCCCEEEEEEc
Q 040753 33 GCTVFNENGEIVYRIDN 49 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg 49 (198)
||.|+|++|+.+=+|.+
T Consensus 107 G~~V~d~~g~~lG~V~~ 123 (172)
T PRK00122 107 GLEVVDEDGEELGKVTD 123 (172)
T ss_pred CcEEEeCCCcEEEEEEE
Confidence 34444444444444444
No 26
>PF06788 UPF0257: Uncharacterised protein family (UPF0257); InterPro: IPR010646 This is a group of proteins of unknown function.; GO: 0005886 plasma membrane
Probab=39.19 E-value=2.5e+02 Score=24.07 Aligned_cols=63 Identities=16% Similarity=0.301 Sum_probs=43.5
Q ss_pred EEEeCCCCEEEEEEcccCC--CCCeEEEEcCCCCeEEEEEeeeeecCeeeEEEeCCCCCCCCCCccCeEEEeeeEEEE
Q 040753 35 TVFNENGEIVYRIDNYDNK--GSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEIT 110 (198)
Q Consensus 35 tV~D~~G~~vyrVdg~~~s--~~~~~~l~D~~G~~Ll~i~~k~l~~~~~w~~~~g~~~~~~~~~~~~~f~vk~~~~v~ 110 (198)
+++|++|++.++|.+.+-. +-+.+.+.|+.-+.-+.+.++-- . |.+.. .++..+++..+|.+.
T Consensus 52 t~~de~g~v~~~v~~~l~~eGCfd~l~~~~~~~n~~~~Lv~d~n---~----l~d~~------~~e~~~~l~~~CqLa 116 (236)
T PF06788_consen 52 TLYDEDGEVTKRVSLTLSREGCFDTLELYDKENNTHLALVRDAN---Y----LLDAE------TQEKRIRLQGKCQLA 116 (236)
T ss_pred EEEcCCCcEEEEEEEEECCccceeeeeecccccccceEEEEecC---c----ccccC------CceEEEEEcceeeEE
Confidence 6899999999999998742 46888999987777777665532 1 22211 125667777777763
No 27
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=38.04 E-value=89 Score=21.95 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=20.4
Q ss_pred eEEEeCCCC------EEEEEEccc-CCCCCeEEEEcCCCCeEEEEE
Q 040753 34 CTVFNENGE------IVYRIDNYD-NKGSNEVYLMDLRGNVLFTIL 72 (198)
Q Consensus 34 ftV~D~~G~------~vyrVdg~~-~s~~~~~~l~D~~G~~Ll~i~ 72 (198)
.+|.|++|+ +.|.+++.. ..+...-...|.+|.-++.|+
T Consensus 24 v~v~D~~Gnpv~~~~V~f~~~~~~~~~~~~~~~~Td~~G~a~~~l~ 69 (92)
T smart00634 24 ATVTDANGNPVAGQEVTFTTPSGGALTLSKGTATTDANGIATVTLT 69 (92)
T ss_pred EEEECCCCCCcCCCEEEEEECCCceeeccCCeeeeCCCCEEEEEEE
Confidence 456677766 335555442 112223345566666666665
No 28
>PRK12693 flgG flagellar basal body rod protein FlgG; Provisional
Probab=37.87 E-value=50 Score=28.18 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=32.1
Q ss_pred eEEeCCCe-EEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 27 LVMQGNGC-TVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 27 ~~~sg~~f-tV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.+.|++| .|.+.+|++.|+=+|.+ .+...-.|.+++|.+|+.
T Consensus 95 ~Ai~G~GfF~v~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vl~ 138 (261)
T PRK12693 95 VAIEGQGFFQVQLPDGTIAYTRDGSF-KLDQDGQLVTSGGYPLQP 138 (261)
T ss_pred EEECCCcEEEEEcCCCCeEEeeCCCe-eECCCCCEECCCCCEEee
Confidence 45567666 66667888889988864 565666788999999884
No 29
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=37.10 E-value=55 Score=25.48 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=36.4
Q ss_pred eEEEeCCCCEEEEEEcccCCC-------CCeEEEEcCCCCeEEEEEeeee--ecCeeeEEEe
Q 040753 34 CTVFNENGEIVYRIDNYDNKG-------SNEVYLMDLRGNVLFTILRRVR--VFGRLWRGYK 86 (198)
Q Consensus 34 ftV~D~~G~~vyrVdg~~~s~-------~~~~~l~D~~G~~Ll~i~~k~l--~~~~~w~~~~ 86 (198)
+.|+|++|+.+=++....... .--+.|.|.+|+.|+.-|.... +.+. |..--
T Consensus 1 ~~~~d~~~~~~g~~~r~~~~~~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~-W~~~~ 61 (158)
T TIGR02150 1 VILVDENDNPIGTASKAEVHLQETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGV-WTNSC 61 (158)
T ss_pred CEEECCCCCEeeeeeHHHhhhcCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCC-ccccc
Confidence 358999999999987775542 2346788999998886544432 4455 98653
No 30
>TIGR02273 16S_RimM 16S rRNA processing protein RimM. This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide.
Probab=35.87 E-value=82 Score=24.84 Aligned_cols=9 Identities=44% Similarity=0.634 Sum_probs=3.3
Q ss_pred eEEEeCCCC
Q 040753 34 CTVFNENGE 42 (198)
Q Consensus 34 ftV~D~~G~ 42 (198)
|.|+|.+|+
T Consensus 103 ~~V~d~~~~ 111 (165)
T TIGR02273 103 LEVVTEEGE 111 (165)
T ss_pred cEEEcCCCc
Confidence 333333333
No 31
>PF09008 Head_binding: Head binding; InterPro: IPR009093 This entry represents the N-terminal domain of the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tailspike protein of Salmonella bacteriophage P22 is a viral adhesion protein that mediates attachment of the viral protein to host cell-surface lipopolysaccharide. The tailspike protein displays both receptor binding and destroying properties, inactivating the receptor by endoglycosidase activity. The N-terminal, head-binding domain mediates the non-covalent attachment of the six homotrimeric tailspike molecules to the DNA injection apparatus []. The N-terminal domain of the P22 tailspike protein shows significant sequence similarity to the N-terminal domain of the Shigella phage Sf6 tailspike protein [].; GO: 0009405 pathogenesis; PDB: 2XC1_C 1LKT_D 2VFQ_A 2VFO_A 2VFN_A 2VFP_A 2VKY_B 2VFM_A 2VNL_A 2VBK_A ....
Probab=35.28 E-value=1.3e+02 Score=22.86 Aligned_cols=43 Identities=16% Similarity=0.303 Sum_probs=27.0
Q ss_pred EEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEE
Q 040753 24 MKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTIL 72 (198)
Q Consensus 24 ~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~ 72 (198)
...+.++.++|.+|+.+ .+.-|... ++...++|++|..+|.+-
T Consensus 62 ~QPi~iN~gg~~~y~gq--~a~~vt~~----~hSMAv~d~~g~q~Fy~p 104 (114)
T PF09008_consen 62 AQPIIINKGGFPVYNGQ--IAKFVTVP----GHSMAVYDANGQQQFYFP 104 (114)
T ss_dssp -SSEEE-TTS-EEETTE--E--EEESS----SEEEEEE-TTS-EEEEES
T ss_pred cCCEEEccCCceEEccc--eeEEEEcc----CceEEEEeCCCcEEEeec
Confidence 34688888999999654 66555554 455789999999999873
No 32
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=34.84 E-value=28 Score=24.58 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=11.4
Q ss_pred CeEEEeCCCCEEEEEEc
Q 040753 33 GCTVFNENGEIVYRIDN 49 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg 49 (198)
+|.|+|.+|+.|||-..
T Consensus 27 D~~v~d~~g~~vwrwS~ 43 (82)
T PF12690_consen 27 DFVVKDKEGKEVWRWSD 43 (82)
T ss_dssp EEEEE-TT--EEEETTT
T ss_pred EEEEECCCCCEEEEecC
Confidence 78899999999998643
No 33
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=33.67 E-value=1.1e+02 Score=24.11 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=10.2
Q ss_pred CeEEEeCCCCEEEEEEcc
Q 040753 33 GCTVFNENGEIVYRIDNY 50 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg~ 50 (198)
||.|+|++|+.+=+|.+-
T Consensus 87 G~~V~d~~g~~lG~V~~V 104 (161)
T PRK13828 87 GLAAVDTGGALLGRVKAV 104 (161)
T ss_pred CCEEEeCCCCEEEEEEEE
Confidence 456666666655555553
No 34
>PF07680 DoxA: TQO small subunit DoxA; InterPro: IPR011636 Thiosulphate:quinone oxidoreductase (TQO) catalyses one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon Acidianus ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=33.26 E-value=37 Score=26.52 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=27.2
Q ss_pred CeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee
Q 040753 33 GCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR 76 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l 76 (198)
.|+||+.+|..+| . +.--...|+|.+|+.+++-..+.+
T Consensus 32 ~f~vyr~~G~D~Y-----g-sfl~~i~l~d~~g~vv~~~~~~~L 69 (133)
T PF07680_consen 32 SFHVYRVEGPDVY-----G-SFLIGIQLKDSTGHVVLNWDQEKL 69 (133)
T ss_pred EEEEEEcCCCccC-----C-ceeeEEEEECCCCCEEEEeCHHHh
Confidence 4666655555443 1 445678999999999999987765
No 35
>PRK13239 alkylmercury lyase; Provisional
Probab=32.72 E-value=79 Score=26.50 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=24.7
Q ss_pred eEEEeCCCCEEEEEEcccCCC---CCeEEEEcCCCCeEEEEE
Q 040753 34 CTVFNENGEIVYRIDNYDNKG---SNEVYLMDLRGNVLFTIL 72 (198)
Q Consensus 34 ftV~D~~G~~vyrVdg~~~s~---~~~~~l~D~~G~~Ll~i~ 72 (198)
-+++|++|+++ ||.+|. .+++++ +|+.|.++=
T Consensus 62 ~~~~d~~g~iv----~~plS~~pT~H~v~v---~Gr~lyt~C 96 (206)
T PRK13239 62 DTEYDEDGRII----GYGLTLRPTPHRFEV---DGRQLYTWC 96 (206)
T ss_pred CeEECCCCCEE----eccccCCCcCcEEEE---CCEEEEeeh
Confidence 45899999995 478887 566666 899988874
No 36
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=32.66 E-value=2e+02 Score=20.97 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=22.2
Q ss_pred CCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEE
Q 040753 32 NGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTI 71 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i 71 (198)
+.+.++|.+|.++-.=.... .....+..+..+|+.++.=
T Consensus 65 GnLvl~~~~g~~vW~S~~~~-~~~~~~~~L~ddGnlvl~~ 103 (116)
T cd00028 65 GNLVIYDGSGTVVWSSNTTR-VNGNYVLVLLDDGNLVLYD 103 (116)
T ss_pred CCeEEEcCCCcEEEEecccC-CCCceEEEEeCCCCEEEEC
Confidence 46777777776665422221 2344555666677766644
No 37
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=32.32 E-value=77 Score=26.80 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=9.9
Q ss_pred eEEEEcCCCCeEEEEE
Q 040753 57 EVYLMDLRGNVLFTIL 72 (198)
Q Consensus 57 ~~~l~D~~G~~Ll~i~ 72 (198)
.+.|+|++|+.+-++.
T Consensus 127 ~v~I~D~~G~vV~t~~ 142 (223)
T PRK12813 127 ELVVRDAAGAEVARET 142 (223)
T ss_pred EEEEEcCCCCEEEEEe
Confidence 5666666666665553
No 38
>PRK14591 rimM 16S rRNA-processing protein RimM; Provisional
Probab=32.15 E-value=1.2e+02 Score=24.26 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=5.7
Q ss_pred EEcCCCCeEEEEE
Q 040753 60 LMDLRGNVLFTIL 72 (198)
Q Consensus 60 l~D~~G~~Ll~i~ 72 (198)
+.+.-.+.|+.|+
T Consensus 124 v~~~ga~dll~I~ 136 (169)
T PRK14591 124 IIETGANEVLVCK 136 (169)
T ss_pred EeecCCceEEEEE
Confidence 3344444444443
No 39
>COG4998 Predicted endonuclease (RecB family) [DNA replication, recombination, and repair]
Probab=31.61 E-value=94 Score=25.43 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.6
Q ss_pred cceeEEEeCCCCeEEEEEEeeeecCCCceeeecceEEEEEeCCC
Q 040753 136 AALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHV 179 (198)
Q Consensus 136 ~~~~~I~~~~~g~~VAev~rk~~~~~~~~~~~~dty~l~V~pgv 179 (198)
++ +.|+++ |..|+||.=---. +..+|.++|..|.
T Consensus 23 rn-~~ve~e--gveVgEiDIVAek-------~GerYavEVKAG~ 56 (209)
T COG4998 23 RN-MPVEDE--GVEVGEIDIVAEK-------GGERYAVEVKAGM 56 (209)
T ss_pred ec-ceeecC--CeEEEEEEEEEec-------CCcEEEEEEeccc
Confidence 45 788885 8999998765333 7899999999884
No 40
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=31.18 E-value=3.6e+02 Score=27.25 Aligned_cols=62 Identities=21% Similarity=0.254 Sum_probs=41.9
Q ss_pred EEEeEEeCCCeEEEeCCCCEEEEEEcccCCC-------CC--eEEEEcCCCCeEEEEEee---ee--ecCeeeEEEe
Q 040753 24 MKSLVMQGNGCTVFNENGEIVYRIDNYDNKG-------SN--EVYLMDLRGNVLFTILRR---VR--VFGRLWRGYK 86 (198)
Q Consensus 24 ~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~-------~~--~~~l~D~~G~~Ll~i~~k---~l--~~~~~w~~~~ 86 (198)
...+.|++|++.|+-+-||-|..+|.+...- +. +..=..++|.-|+.+.++ ++ +..+ ..+|+
T Consensus 17 ~Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r-~Vlh~ 92 (893)
T KOG0291|consen 17 AGNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSR-SVLHR 92 (893)
T ss_pred cCcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccc-eeeEE
Confidence 3458999999999999999999999886221 22 122235677777777666 33 4455 55544
No 41
>TIGR00156 conserved hypothetical protein TIGR00156. As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae.
Probab=30.76 E-value=2.4e+02 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=10.1
Q ss_pred CCeEEEeCCCCEEEEEEcccC
Q 040753 32 NGCTVFNENGEIVYRIDNYDN 52 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~ 52 (198)
+.|...|..|++...+|.+.|
T Consensus 73 d~Y~F~D~TG~I~VeId~~~w 93 (126)
T TIGR00156 73 DRYVFRDKSGEINVVIPAAVW 93 (126)
T ss_pred ceEEEECCCCCEEEEECHHHc
Confidence 445555555555444444433
No 42
>PRK14592 rimM 16S rRNA-processing protein RimM; Provisional
Probab=30.71 E-value=1.3e+02 Score=23.80 Aligned_cols=17 Identities=29% Similarity=0.221 Sum_probs=8.6
Q ss_pred CeEEEeCCCCEEEEEEc
Q 040753 33 GCTVFNENGEIVYRIDN 49 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg 49 (198)
+|+|+|++|+.+=+|..
T Consensus 99 G~~V~~~~g~~lG~V~~ 115 (165)
T PRK14592 99 GMEVKLEDNTIYGYIKK 115 (165)
T ss_pred CcEEEcCCCCEEEEEEE
Confidence 45555555555444444
No 43
>PRK14590 rimM 16S rRNA-processing protein RimM; Provisional
Probab=30.51 E-value=1.4e+02 Score=23.90 Aligned_cols=30 Identities=13% Similarity=0.400 Sum_probs=15.2
Q ss_pred CeEEEeCCCCEEE-EEEcccCCCCCeEEEEcCCCCeEEEEE
Q 040753 33 GCTVFNENGEIVY-RIDNYDNKGSNEVYLMDLRGNVLFTIL 72 (198)
Q Consensus 33 ~ftV~D~~G~~vy-rVdg~~~s~~~~~~l~D~~G~~Ll~i~ 72 (198)
+|.|+|++|+.+- +|.. +++...+.|+.|.
T Consensus 104 G~~V~d~~g~~lGG~V~~----------v~~~~a~dllvV~ 134 (171)
T PRK14590 104 GLQAIDETGKPLNWKLTD----------VQDNPAHPILVFI 134 (171)
T ss_pred CcEEEeCCCCEeeeEEEE----------EecCCCceEEEEE
Confidence 4555555555443 4443 4444555555553
No 44
>PF06357 Omega-toxin: Omega-atracotoxin; InterPro: IPR009415 This family consists of several Hadronyche versuta (Blue mountains funnel-web spider) specific omega-atracotoxin proteins. Omega-Atracotoxin-Hv1a is an insect-specific neurotoxin whose phylogenetic specificity derives from its ability to antagonise insect, but not vertebrate, voltage-gated calcium channels. Two spatially proximal residues, Asn(27) and Arg(35), form a contiguous molecular surface that is essential for toxin activity. It has been proposed that this surface of the beta-hairpin is a key site for interaction of the toxin with insect calcium channels [].; GO: 0019855 calcium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AXH_A 1HVW_A.
Probab=30.40 E-value=44 Score=20.07 Aligned_cols=11 Identities=64% Similarity=0.839 Sum_probs=7.4
Q ss_pred eCCCCEEEEEE
Q 040753 38 NENGEIVYRID 48 (198)
Q Consensus 38 D~~G~~vyrVd 48 (198)
++|||.|+|.|
T Consensus 27 NeNGntV~RCd 37 (37)
T PF06357_consen 27 NENGNTVKRCD 37 (37)
T ss_dssp -SSS-EEEEE-
T ss_pred ccCCceeeccC
Confidence 68999999975
No 45
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=29.88 E-value=79 Score=24.12 Aligned_cols=33 Identities=6% Similarity=-0.024 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCeEEEEEeeeeecCeeeEEEe
Q 040753 54 GSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYK 86 (198)
Q Consensus 54 ~~~~~~l~D~~G~~Ll~i~~k~l~~~~~w~~~~ 86 (198)
.++++.+.|..|.--+++.......++.+++..
T Consensus 68 ~Gd~i~v~~~~~~~~Y~V~~~~~v~~~~~~~~~ 100 (137)
T cd05830 68 PGDKIVVETADGWYTYVVRSSEIVLPTDVEVIA 100 (137)
T ss_pred CCCEEEEEECCeEEEEEEeEEEEECCCcceEee
Confidence 378888888888777777766554444244444
No 46
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=29.55 E-value=83 Score=21.36 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=26.4
Q ss_pred EEEeCCCCEEEE-EEcccCCC-----CCeEEEEcCCCCeEEEEE
Q 040753 35 TVFNENGEIVYR-IDNYDNKG-----SNEVYLMDLRGNVLFTIL 72 (198)
Q Consensus 35 tV~D~~G~~vyr-Vdg~~~s~-----~~~~~l~D~~G~~Ll~i~ 72 (198)
.|.|.+|+++=+ |+|....+ -.+=.|.|.+|+.|-...
T Consensus 14 ~V~d~~G~~vG~vveGd~k~L~G~~vd~~G~I~d~~G~viGkae 57 (64)
T PF12396_consen 14 NVVDDDGNVVGRVVEGDPKKLVGKKVDEDGDILDKDGNVIGKAE 57 (64)
T ss_pred eEECCCCCEEEEEecCCHHHhcCCcCCCCCCEECCCCCEEEEEE
Confidence 477999999999 56654333 344467788888877654
No 47
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=29.29 E-value=11 Score=26.80 Aligned_cols=43 Identities=23% Similarity=0.321 Sum_probs=20.6
Q ss_pred eEEeCC-CeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEE
Q 040753 27 LVMQGN-GCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLF 69 (198)
Q Consensus 27 ~~~sg~-~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll 69 (198)
+.|.++ =|-|+|.+|..+..-...-+-..+-.-+.|++|++++
T Consensus 51 ~r~~~~gY~fi~d~~g~~l~hp~~p~~~G~n~~~~~D~~G~~~i 94 (95)
T PF08269_consen 51 LRYGGDGYFFIYDMDGVVLAHPSNPELEGKNLSDLKDPNGKYLI 94 (95)
T ss_dssp --SBTTB--EEE-TTSBEEEESS-GGGTT-B-TT-B-TT--BHH
T ss_pred cccCCCCeEEEEeCCCeEEEcCCCcccCCcccccCCCCCCCEEe
Confidence 455553 4788999998877754333344555568888988764
No 48
>cd00004 Sortase Sortases are cysteine transpeptidases, found in gram-positive bacteria, that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The different classes are called Sortase A or SrtA (subfamily 1), B or SrtB (subfamily 2), C or SrtC (subfamily3), D or SrtD (subfamilies 4 and 5), and E or SrtE. In two different sortase subfamilies, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one s
Probab=28.45 E-value=92 Score=23.17 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCeEEEEEeeeeecCe
Q 040753 55 SNEVYLMDLRGNVLFTILRRVRVFGR 80 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k~l~~~~ 80 (198)
++.+.|.+..+.-.+++.+.....+.
T Consensus 68 Gd~v~v~~~~~~~~Y~V~~~~~v~~~ 93 (128)
T cd00004 68 GDKIYLTDGGKTYVYKVTSILTVTPT 93 (128)
T ss_pred CCEEEEEECCEEEEEEEEEEEEECCC
Confidence 78888888877777777766554444
No 49
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=28.07 E-value=1.5e+02 Score=23.33 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=34.5
Q ss_pred CCCeEEEeCCCCEEEEEEcccCCC----CCeEE----EEcCC--CCeEEEEEeeee-ecCeeeEEEeCC
Q 040753 31 GNGCTVFNENGEIVYRIDNYDNKG----SNEVY----LMDLR--GNVLFTILRRVR-VFGRLWRGYKGD 88 (198)
Q Consensus 31 g~~ftV~D~~G~~vyrVdg~~~s~----~~~~~----l~D~~--G~~Ll~i~~k~l-~~~~~w~~~~g~ 88 (198)
.+-|.|+|++|+++..++-..... +.-+. +.|.+ |..+++-|.... ..|-.|...-++
T Consensus 4 ~E~~~v~d~~~~~~~~~~r~~~~~~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G 72 (180)
T cd03676 4 NELYAVYGPFGEPLFEIERAASRLFGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAG 72 (180)
T ss_pred CcceeeECCCCCEeEEEEecccccCCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeeccc
Confidence 356899999999998776554322 34444 33665 555555554433 333338766654
No 50
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=27.28 E-value=1.3e+02 Score=17.56 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=16.5
Q ss_pred EeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEE
Q 040753 37 FNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLF 69 (198)
Q Consensus 37 ~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll 69 (198)
||++|+++=.++.. ......-+|+.|+++-
T Consensus 1 YD~~G~l~~~~d~~---G~~~~y~YD~~g~l~~ 30 (38)
T PF05593_consen 1 YDANGRLTSVTDPD---GRTTRYTYDAAGRLTS 30 (38)
T ss_pred CCCCCCEEEEEcCC---CCEEEEEECCCCCEEE
Confidence 46677776666432 2333455566666543
No 51
>cd06165 Sortase_A_1 Sortase A (SrtA) or subfamily-1 sortases are cysteine transpeptidases found in gram-positive bacteria that anchor surface proteins to peptidoglycans of the bacterial cell wall envelope. They do so by catalyzing a transpeptidation reaction in which the surface protein substrate is cleaved at a conserved cell wall sorting signal (usually a pentapeptide motif), and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. This group contains a subset of Class A (subfamily-1) sortases, excluding SrtA from Staphylococcus aureus. Sortase A cleaves between threonine and glycine of the LPXTG motif in a wide range of protein substrates. It affects the ability of a pathogen to establish successful infection. Sortase A contains an N-terminal region that functions as both a signal peptide for secretion and a stop-tra
Probab=26.37 E-value=97 Score=23.14 Aligned_cols=32 Identities=13% Similarity=0.092 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCeEEEEEeeeeecCeeeEEEe
Q 040753 55 SNEVYLMDLRGNVLFTILRRVRVFGRLWRGYK 86 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k~l~~~~~w~~~~ 86 (198)
++++.|.+..+.--+.+.+.....+..++++.
T Consensus 67 Gd~I~l~~~~~~~~Y~V~~~~~v~~~~~~~~~ 98 (127)
T cd06165 67 GDKIYLTDKDNVYEYKVTSKKIVDPTRVDVID 98 (127)
T ss_pred CCEEEEEECCEEEEEEEeeEEEECcccceeec
Confidence 77888888777666777666554444355554
No 52
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=25.93 E-value=2.6e+02 Score=20.20 Aligned_cols=39 Identities=15% Similarity=0.352 Sum_probs=22.7
Q ss_pred CCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 31 GNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 31 g~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
.+.+.++|.+|.++..=... ......+..++.+|+.++.
T Consensus 63 dGnLvl~~~~g~~vW~S~t~-~~~~~~~~~L~ddGnlvl~ 101 (114)
T smart00108 63 DGNLVLYDGDGRVVWSSNTT-GANGNYVLVLLDDGNLVIY 101 (114)
T ss_pred CCCEEEEeCCCCEEEEeccc-CCCCceEEEEeCCCCEEEE
Confidence 45777777777776553322 1234455566666766654
No 53
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.88 E-value=1.4e+02 Score=25.08 Aligned_cols=19 Identities=16% Similarity=0.074 Sum_probs=14.4
Q ss_pred CCeEEEEcCCCCeEEEEEe
Q 040753 55 SNEVYLMDLRGNVLFTILR 73 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~ 73 (198)
.-.+.|+|.+|+.+-++.-
T Consensus 123 ~v~i~I~d~~G~~V~t~~l 141 (221)
T PRK12634 123 FVNFEITDANGAFVKQISV 141 (221)
T ss_pred eEEEEEEcCCCCEEEEEec
Confidence 3467888999998888754
No 54
>PF04170 NlpE: NlpE N-terminal domain; InterPro: IPR007298 This family represents a bacterial outer membrane lipoprotein that is necessary for signalling by the Cpx pathway []. This pathway responds to cell envelope disturbances and increases the expression of periplasmic protein folding and degradation factors. While the molecular function of the NlpE protein is unknown, it may be involved in detecting bacterial adhesion to abiotic surfaces. NlpE from Escherichia coli and Salmonella typhi is also known to confer copper tolerance in copper-sensitive strains of E. coli, and may be involved in copper efflux and delivery of copper to copper-dependent enzymes [].; PDB: 3LHN_A 2Z4I_B 2Z4H_A.
Probab=25.72 E-value=2.4e+02 Score=19.79 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=4.5
Q ss_pred eEEEEcCCCCeE
Q 040753 57 EVYLMDLRGNVL 68 (198)
Q Consensus 57 ~~~l~D~~G~~L 68 (198)
.+.++|.+|+++
T Consensus 72 ~L~~Ld~~G~~i 83 (87)
T PF04170_consen 72 SLEMLDQDGNPI 83 (87)
T ss_dssp EEEEE-TTS-B-
T ss_pred EEEEECCCCCcC
Confidence 445555555543
No 55
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.40 E-value=2e+02 Score=24.09 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=24.3
Q ss_pred eEEEEeeeccCCCCcCccceeEEEeCCCCeEEEEEEeeeec
Q 040753 119 CYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSR 159 (198)
Q Consensus 119 ~~~v~~~~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk~~~ 159 (198)
.|+|.- |.-.+-+ |.|.+. +|.+|.+-++|.-.
T Consensus 50 ~fqV~t------GG~fDVD-~~I~aP-dgkvI~~~~kk~~~ 82 (209)
T KOG1693|consen 50 EFQVQT------GGHFDVD-YDIEAP-DGKVIYSEKKKRYD 82 (209)
T ss_pred EEEEEe------CCceeeE-EEEECC-CCCEEeeccccccc
Confidence 577762 4455677 999998 69999888877554
No 56
>PF07661 MORN_2: MORN repeat variant; InterPro: IPR011652 This entry represents an apparent variant of the IPR003409 from INTERPRO repeat.
Probab=25.32 E-value=1e+02 Score=15.28 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=12.1
Q ss_pred CCeEEEeCCCCEEEEE
Q 040753 32 NGCTVFNENGEIVYRI 47 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrV 47 (198)
+-+..++++|++....
T Consensus 3 G~~~~yy~nG~l~~~~ 18 (22)
T PF07661_consen 3 GEWKFYYENGKLKSEG 18 (22)
T ss_pred ceEEEEeCCCCEEEEE
Confidence 4577888999887764
No 57
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=25.05 E-value=56 Score=21.56 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=9.7
Q ss_pred CeEEEeCCCCEEEEEEc
Q 040753 33 GCTVFNENGEIVYRIDN 49 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg 49 (198)
.|..||+||++| ||.-
T Consensus 11 ~F~FYDen~~lV-rv~v 26 (54)
T PF12142_consen 11 SFLFYDENGQLV-RVKV 26 (54)
T ss_dssp EEEEE-TTS-EE-EEEG
T ss_pred eeEEECCCCCEE-EEEh
Confidence 578899998875 4443
No 58
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=24.73 E-value=2.6e+02 Score=23.52 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.8
Q ss_pred CeEEEeCCCCEEEEEEcc
Q 040753 33 GCTVFNENGEIVYRIDNY 50 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg~ 50 (198)
..+|+|++|++|++++-.
T Consensus 129 ti~I~D~~G~~Vrt~~lg 146 (225)
T PRK06655 129 TVTITDSAGQVVRTIDLG 146 (225)
T ss_pred EEEEEcCCCCEEEEEecC
Confidence 489999999999999864
No 59
>PRK12643 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=24.57 E-value=67 Score=26.86 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=23.0
Q ss_pred eEEeCCCe-EEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEE
Q 040753 27 LVMQGNGC-TVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLF 69 (198)
Q Consensus 27 ~~~sg~~f-tV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll 69 (198)
+.+.|++| .|.+.+|+..|+=+|.+ .+..+-.| +.+|.+|+
T Consensus 80 lAI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~L-t~~G~~Vl 121 (209)
T PRK12643 80 VALQQDGYLAVQLPDGSEAYTRNGNI-QISANGQM-TVQGYPLM 121 (209)
T ss_pred EEECCCcEEEEEcCCCCeEEeeCCCc-eECCCCCC-cCCCcCcc
Confidence 34455544 55556776677766654 44333345 66666665
No 60
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=23.80 E-value=2.6e+02 Score=24.16 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=27.8
Q ss_pred EEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEe
Q 040753 28 VMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILR 73 (198)
Q Consensus 28 ~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~ 73 (198)
.+.++.+.+.|..+..-|+++=..-.-.-++.|+|.+|++|-++.-
T Consensus 115 ~v~~~~~~l~~~~~~~~~~~~l~~~a~~v~v~I~D~~G~~V~t~~l 160 (259)
T PRK12812 115 TVSDNAVKLTGADELIALKLYFPEDSDEGTLEIYDSNNKLVEKIDF 160 (259)
T ss_pred EEecceeeeccCcceeEEEEecCCcCceEEEEEEeCCCCEEEEEec
Confidence 4556666665543455555542221224678888999999877753
No 61
>PF13585 CHU_C: C-terminal domain of CHU protein family; PDB: 3EIF_A 1XF1_B.
Probab=23.74 E-value=52 Score=23.19 Aligned_cols=18 Identities=33% Similarity=0.787 Sum_probs=6.3
Q ss_pred CeEEEeCCCCEEEEEEcc
Q 040753 33 GCTVFNENGEIVYRIDNY 50 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg~ 50 (198)
.+.|||.-|++||+-+++
T Consensus 30 ~~~IynrwG~~Vf~~~~~ 47 (87)
T PF13585_consen 30 SLTIYNRWGELVFESNDY 47 (87)
T ss_dssp EEEEE-SSS-EEEE---E
T ss_pred EEEEEeCCCcEEEEECCC
Confidence 344455555555544444
No 62
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=23.73 E-value=87 Score=24.38 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=33.9
Q ss_pred eEEEeCCCCEEEEEEcccCCCC-------CeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeC
Q 040753 34 CTVFNENGEIVYRIDNYDNKGS-------NEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKG 87 (198)
Q Consensus 34 ftV~D~~G~~vyrVdg~~~s~~-------~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g 87 (198)
..|+|++|+++=+..-...... --+.|.|.+|+.|+.-|.... ..|-.|....|
T Consensus 4 ~~~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~g 65 (165)
T cd02885 4 VILVDEDDNPIGTAEKLEAHLKGTLLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCC 65 (165)
T ss_pred EEEECCCCCCccccCHHHHhhcCCcceeEEEEEEEcCCCcEEEEeccCCCccCCCccccccc
Confidence 5789999999987666543321 124578999988876544332 33443886543
No 63
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=23.21 E-value=1.7e+02 Score=25.05 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=39.8
Q ss_pred CCCeEEEeCCCCEEEEEEcccC------------CCCCeEEEEcCCCCeEEEEEeeee--ecCeeeEEEeCC
Q 040753 31 GNGCTVFNENGEIVYRIDNYDN------------KGSNEVYLMDLRGNVLFTILRRVR--VFGRLWRGYKGD 88 (198)
Q Consensus 31 g~~ftV~D~~G~~vyrVdg~~~------------s~~~~~~l~D~~G~~Ll~i~~k~l--~~~~~w~~~~g~ 88 (198)
.+.+.|+|++++++=+..-+.. ...=.+.|.|.+|+.|++-|...- +-+. |..--++
T Consensus 22 ~e~v~lvDe~d~~~G~~~r~~~H~~~~~~~~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~-Wd~s~~G 92 (247)
T PLN02552 22 EDECILVDENDNVVGHDSKYNCHLFEKIEPRGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLV-WTNTCCS 92 (247)
T ss_pred cCeEEEEcCCCCEEeeeEHhhhhccccccCCCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcc-eecccCC
Confidence 3789999999999988765321 113356788999998888886543 4445 8666544
No 64
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=23.12 E-value=1.7e+02 Score=24.69 Aligned_cols=35 Identities=23% Similarity=0.262 Sum_probs=0.0
Q ss_pred eEEEeCCCCEEEEEEcccCCCCCeEEEEcCC---CCeE
Q 040753 34 CTVFNENGEIVYRIDNYDNKGSNEVYLMDLR---GNVL 68 (198)
Q Consensus 34 ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~---G~~L 68 (198)
.+|+|++|++|++++-....-+..-+--|.. |+++
T Consensus 133 v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~ 170 (230)
T PRK12633 133 VKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPL 170 (230)
T ss_pred EEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcC
No 65
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=23.04 E-value=1.3e+02 Score=26.58 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=12.0
Q ss_pred CeEEEEcCCCCeEEEEE
Q 040753 56 NEVYLMDLRGNVLFTIL 72 (198)
Q Consensus 56 ~~~~l~D~~G~~Ll~i~ 72 (198)
-++.|+|++|+.|-++.
T Consensus 168 v~I~I~Da~G~vVrTi~ 184 (295)
T PRK05842 168 PAIQILNENNELVKTIP 184 (295)
T ss_pred EEEEEEcCCCCEEEEEe
Confidence 45677777777777764
No 66
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=23.01 E-value=2.1e+02 Score=21.53 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=15.5
Q ss_pred eEEEeCCCCeEEEEEEeeee
Q 040753 139 FKIIDCRRGVVVAEGMRKQS 158 (198)
Q Consensus 139 ~~I~~~~~g~~VAev~rk~~ 158 (198)
..|+|. +|++||+++..|.
T Consensus 113 v~i~D~-~G~~Va~~~~t~~ 131 (132)
T PF14539_consen 113 VEITDA-DGEVVAEATITWY 131 (132)
T ss_dssp EEEEET-TC-EEEEEEEEEE
T ss_pred EEEEEC-CCCEEEEEEEEEE
Confidence 789997 7999999999874
No 67
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=2.5e+02 Score=22.52 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=24.1
Q ss_pred ccceeEEEeCCCCeEEEEEEeeeecCCCceeeecceEEEEEeCCC
Q 040753 135 SAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHV 179 (198)
Q Consensus 135 ~~~~~~I~~~~~g~~VAev~rk~~~~~~~~~~~~dty~l~V~pgv 179 (198)
..+ +-|+++ +++++|-=+-.... ..+.--..-+.|.|..|+
T Consensus 114 ~dE-vlVVne-~d~LlAvGra~ls~--~E~~~~~~G~AVkVr~G~ 154 (155)
T COG1370 114 GDE-VLVVNE-DDELLAVGRALLSG--AEMREFERGMAVKVREGL 154 (155)
T ss_pred CCe-EEEECC-CCcEEEeeeEeecH--HHHhhccccEEEEEecCC
Confidence 344 778887 67887764443332 344334566667776664
No 68
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=22.70 E-value=2.2e+02 Score=23.31 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=30.6
Q ss_pred CeEEEeCCCCEEEEEEcccCCC----------CCeEEEEcCCCCeEEEEEeee
Q 040753 33 GCTVFNENGEIVYRIDNYDNKG----------SNEVYLMDLRGNVLFTILRRV 75 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg~~~s~----------~~~~~l~D~~G~~Ll~i~~k~ 75 (198)
..++||++|.+-|++.+.-+.. .-.+.+++..|.+..+++.+.
T Consensus 49 ~~~~yd~~G~l~y~l~a~~~~Hy~~~~~t~f~~P~l~~y~~~~~~~W~v~A~~ 101 (192)
T PRK10893 49 DTVVYNPEGALSYKLVAQHVEYYSDQAVSWFTQPVLTTFDKNKVPTWSVRADK 101 (192)
T ss_pred EEEEECCCCCEEEEEEecceEEcCCCCCEEEeCCeEEEECCCCcceEEEEeCe
Confidence 4578999999999999985432 445666677777666665443
No 69
>PRK12819 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=22.69 E-value=1.2e+02 Score=25.84 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=27.8
Q ss_pred CCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 32 NGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
++|-+...+|...|+=+|.+ .+...-.|.+++|.+|+-
T Consensus 99 ~gFf~v~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vlg 136 (257)
T PRK12819 99 SSFFVTSKNGETFLTRDGSF-TLNSDRYLQTASGAFVMG 136 (257)
T ss_pred CEEEEEcCCCCeeEeeCCCe-eECCCCCEEcCCCCEEec
Confidence 66777777888888877764 555556688888887774
No 70
>PRK10053 hypothetical protein; Provisional
Probab=22.52 E-value=3.7e+02 Score=20.81 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=11.3
Q ss_pred CeEEEEcCCCCeEEEEEeee
Q 040753 56 NEVYLMDLRGNVLFTILRRV 75 (198)
Q Consensus 56 ~~~~l~D~~G~~Ll~i~~k~ 75 (198)
++..+.|.+|..-..|-.+.
T Consensus 77 d~Y~F~D~tG~I~VeID~~~ 96 (130)
T PRK10053 77 DRYVFRDKSGEINVIIPAAV 96 (130)
T ss_pred ceEEEECCCCcEEEEeCHHH
Confidence 44555566666666555554
No 71
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=22.44 E-value=2.1e+02 Score=21.75 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=25.2
Q ss_pred CCCEEEEEEcccCCC--------CCeEEEEcCCCCeEEEE
Q 040753 40 NGEIVYRIDNYDNKG--------SNEVYLMDLRGNVLFTI 71 (198)
Q Consensus 40 ~G~~vyrVdg~~~s~--------~~~~~l~D~~G~~Ll~i 71 (198)
+|..+|.|+|...+. .=++.|.|.+|++|.+-
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r 104 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARR 104 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEE
Confidence 788888888887544 44789999999999653
No 72
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=22.36 E-value=59 Score=23.05 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=21.5
Q ss_pred EEeCCCeEE-EeCCCCEEEEEEcccCCCCCeEEEE
Q 040753 28 VMQGNGCTV-FNENGEIVYRIDNYDNKGSNEVYLM 61 (198)
Q Consensus 28 ~~sg~~ftV-~D~~G~~vyrVdg~~~s~~~~~~l~ 61 (198)
.++....+| .+++|+.| . +.|+.++.+...||
T Consensus 35 ~l~~~~~~l~L~eDGTeV-t-EeyF~tLp~nT~lm 67 (77)
T cd06535 35 QLPCAGSRLCLYEDGTEV-T-EEYFPTLPDNTELV 67 (77)
T ss_pred CCCCCCcEEEEecCCcEe-h-HHHHhcCCCCcEEE
Confidence 344434444 77888888 6 88888887666555
No 73
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=22.36 E-value=76 Score=20.37 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=12.7
Q ss_pred CCeEEEeCCCCEEEEEE
Q 040753 32 NGCTVFNENGEIVYRID 48 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVd 48 (198)
+=|.=.|++|+++|.=.
T Consensus 14 ~vYk~~D~~G~v~ysd~ 30 (60)
T PF13511_consen 14 EVYKWVDENGVVHYSDT 30 (60)
T ss_pred cEEEEECCCCCEEECcc
Confidence 45666799999998644
No 74
>PRK12640 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=22.24 E-value=1e+02 Score=26.31 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=29.9
Q ss_pred eEEeCCC-eEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 27 LVMQGNG-CTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 27 ~~~sg~~-ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.+.|++ |.|.+.+|+..|+=+|.+ .+...-.|.+++|.+|+.
T Consensus 80 lAI~G~GFF~V~~~~G~~~yTR~G~F-~~d~~G~Lvt~~G~~vlg 123 (246)
T PRK12640 80 VALQGDGWLAVQAPDGSEAYTRNGSL-QVDANGQLRTANGLPVLG 123 (246)
T ss_pred EEECCCcEEEEEcCCCCEEEEeCCCe-eECCCCCEEcCCCCCccC
Confidence 3445644 566667888888877764 565666688888888774
No 75
>TIGR01076 sortase_fam LPXTG-site transpeptidase (sortase) family protein. of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known.
Probab=22.02 E-value=1.5e+02 Score=22.55 Aligned_cols=55 Identities=9% Similarity=-0.017 Sum_probs=29.3
Q ss_pred CCCeEEEeCCC---CEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeeeecCeeeEEEe
Q 040753 31 GNGCTVFNENG---EIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYK 86 (198)
Q Consensus 31 g~~ftV~D~~G---~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l~~~~~w~~~~ 86 (198)
.+.+.|.-.++ ...|+-=.. ...++.+.|.+..+.-.+.+.......+..+.+..
T Consensus 41 ~gN~vIaGH~~~~~~~~F~~L~~-l~~GD~i~v~~~~~~~~Y~V~~~~~v~~~d~~~l~ 98 (136)
T TIGR01076 41 NTRIVITGHRGLPTATMFTNLDK-LKKGDMLYLHVGNEVLTYQVTSTKIVEPTDTEVLL 98 (136)
T ss_pred CCeEEEEecCCCCCCCccCCHHH-CCCCCEEEEEECCcEEEEEEEEEEEECcCcceeEe
Confidence 35666666553 222211111 12378888888777777777665554443355443
No 76
>PRK02939 lipoprotein; Reviewed
Probab=21.79 E-value=5.2e+02 Score=22.19 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=30.3
Q ss_pred EEEeCCCCEEEEEEcccCC--CCCeEEEEcCCCCeEEEEEee
Q 040753 35 TVFNENGEIVYRIDNYDNK--GSNEVYLMDLRGNVLFTILRR 74 (198)
Q Consensus 35 tV~D~~G~~vyrVdg~~~s--~~~~~~l~D~~G~~Ll~i~~k 74 (198)
+++|++|.+.++|.+.+-. +-..+.+.|+.-+.-+.+.++
T Consensus 52 t~~ne~g~v~~~v~~~~~~eGCfdtl~~~~~~~n~~l~lvr~ 93 (236)
T PRK02939 52 TLMDEQGEVTKRVSGTLSEEGCFDTLELLDLENNTGLALVLD 93 (236)
T ss_pred EEEcCCCcEEEEEEEEEcCCCceeeeEecccccccceEEEEe
Confidence 6899999999999998642 368899999866544444443
No 77
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.67 E-value=4.2e+02 Score=23.24 Aligned_cols=35 Identities=26% Similarity=0.431 Sum_probs=18.2
Q ss_pred CCeEEEeCCCCEEEEEEcccCCCCCeEEEEcC-CCCeEEEEE
Q 040753 32 NGCTVFNENGEIVYRIDNYDNKGSNEVYLMDL-RGNVLFTIL 72 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~-~G~~Ll~i~ 72 (198)
|+.+| |.+|++-..+=+ +.++.-.|+ +|+.|++|+
T Consensus 215 DGm~I-D~eG~L~Va~~n-----g~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 215 DGMTI-DTEGNLYVATFN-----GGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred CcceE-ccCCcEEEEEec-----CcEEEEECCCCCcEEEEEE
Confidence 55555 555555443322 344555555 466666654
No 78
>PRK10523 lipoprotein involved with copper homeostasis and adhesion; Provisional
Probab=21.63 E-value=1.7e+02 Score=25.05 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=18.9
Q ss_pred CCEEEEEEcccCCCCCeEEEEcCCCCe-EEEEEeeee
Q 040753 41 GEIVYRIDNYDNKGSNEVYLMDLRGNV-LFTILRRVR 76 (198)
Q Consensus 41 G~~vyrVdg~~~s~~~~~~l~D~~G~~-Ll~i~~k~l 76 (198)
++-.|.-.|......+.++|.|.+|.. .|.+....+
T Consensus 81 ~~~~f~~~G~w~~~~~~i~L~~~~g~~~yF~v~e~~L 117 (234)
T PRK10523 81 EPSSFASYGTWARTADKLVLTDSKGEKSYYRAKGDAL 117 (234)
T ss_pred CCCceEeeEEEEecCCEEEEecCCCCEeEEEECCCEE
Confidence 345566666543334566666766664 444444334
No 79
>PF03413 PepSY: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR005075 This signature, PepSY, is found in the propeptide of members of the MEROPS peptidase family M4 (clan MA(E)), which contains the thermostable thermolysins (3.4.24.27 from EC), and related thermolabile neutral proteases (bacillolysins) (3.4.24.28 from EC) from various species of Bacillus. It is also in many non-peptidase proteins, including Bacillus subtilis YpeB protein - a regulator of SleB spore cortex lytic enzyme - and a large number of eubacterial and archaeal cell wall-associated and secreted proteins which are mostly annotated as 'hypothetical protein'. Many extracellular bacterial proteases are produced as proenzymes. The propeptides usually have a dual function, i.e. they function as an intramolecular chaperone required for the folding of the polypeptide and as an inhibitor preventing premature activation of the enzyme. Analysis of the propeptide region of the M4 family of peptidases reveals two regions of conservation, the PepSY domain and a second domain, proximate to the N terminus, the FTP domain (IPR011096 from INTERPRO), which is also found in isolation in the propeptide of eukaryotic peptidases belong to MEROPS peptidase family M36. Propeptide domain swapping experiments, for example swapping the propeptide domain of PA protease with that of vibrolysin, both propeptides contain the FTP and PepSY domains, allows the PA protease domain to fold correctly and inhibits the C-terminal autoprocessing activity. However, swapping the propeptide of PA protease for the thermolysin propeptide, does not facilitate the correct folding nor the processing of the chimaeric protein into an active peptidase []. Mutational analysis of the Pseudomonas aeruginosa elastase gene revealed two mutations in the propeptide which resulted in the loss of inhibitory activity but not chaperone activity: A-15V and T-153I (where +1 is defined as the first residue of the mature peptidase). Both mutations resulted in peptidase activity, the T-153V mutation being much less effective than the A-15I mutation [] in activating peptidase activity. The T-153V mutation lies N-terminal to the FTP domain while the A-15I mutation is C-terminal to the PepSY domain. Given the diverse range of other proteins, both domains occur in in isolation, the exact function of each is still unclear; though it has been proposed that the PepSY domain primarily has inhibitory activity and in conjunction with the FTP domain in chaperone activity. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 2GU3_A 3NQZ_A 3NQY_A 2KGY_A.
Probab=21.56 E-value=2.1e+02 Score=17.78 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=17.1
Q ss_pred CCCEEEEEEccc---CCCCCeEEEEcC-CCCeEE
Q 040753 40 NGEIVYRIDNYD---NKGSNEVYLMDL-RGNVLF 69 (198)
Q Consensus 40 ~G~~vyrVdg~~---~s~~~~~~l~D~-~G~~Ll 69 (198)
+|+.+|.|.-.. -+...-.+..|+ +|+.|-
T Consensus 29 ~~~~~Y~v~~~~~~~~~~~~~~v~VDa~tG~Il~ 62 (64)
T PF03413_consen 29 NGRLVYEVEVVSDDDPDGGEYEVYVDAYTGEILS 62 (64)
T ss_dssp TCEEEEEEEEEBTTSTTTEEEEEEEETTT--EEE
T ss_pred CCcEEEEEEEEEEecCCCCEEEEEEECCCCeEEE
Confidence 899999999654 122233334687 566653
No 80
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=21.38 E-value=80 Score=22.29 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=15.1
Q ss_pred CeEEEeCCCCEEEEEEccc
Q 040753 33 GCTVFNENGEIVYRIDNYD 51 (198)
Q Consensus 33 ~ftV~D~~G~~vyrVdg~~ 51 (198)
.+-++|.+|++++++.|+.
T Consensus 85 t~~~~d~~G~~v~~~~G~~ 103 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYL 103 (112)
T ss_dssp EEEECTTTSCEEEEEESS-
T ss_pred EEEEEcCCCCEEEEecCCC
Confidence 4567788999999999974
No 81
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=20.84 E-value=69 Score=26.02 Aligned_cols=21 Identities=38% Similarity=0.522 Sum_probs=17.3
Q ss_pred CCCeEEEeCCCCEEEEEEcccCC
Q 040753 31 GNGCTVFNENGEIVYRIDNYDNK 53 (198)
Q Consensus 31 g~~ftV~D~~G~~vyrVdg~~~s 53 (198)
|++||| -.+|| .||++|+...
T Consensus 33 gg~~t~-~~~g~-~~r~~~~~~d 53 (174)
T TIGR03406 33 GGNFTV-VVEGN-MARIDGKDAD 53 (174)
T ss_pred CCeEEE-EEcCe-EEEecCcChh
Confidence 789999 55688 8999999754
No 82
>PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif). Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A.
Probab=20.67 E-value=3.6e+02 Score=19.90 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=27.0
Q ss_pred CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCC
Q 040753 14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKG 54 (198)
Q Consensus 14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~ 54 (198)
...+++|+=.-- -.+.++.|...|.+|++...++...+..
T Consensus 33 Dd~~V~L~G~Iv-~~l~~d~Y~F~D~TG~I~VeId~~~w~g 72 (103)
T PF04076_consen 33 DDTPVTLEGNIV-KQLGDDKYLFRDATGEIEVEIDDDVWRG 72 (103)
T ss_dssp SSEEEEEEEEEE-EEEETTEEEEEETTEEEEEE--GGGSTT
T ss_pred CCCeEEEEEEEE-EEecCCEEEEECCCCcEEEEEChhhcCC
Confidence 445666664322 2556899999999999999999987653
No 83
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=20.21 E-value=1.4e+02 Score=20.08 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=17.3
Q ss_pred CCCCeEEEEcCCCCeEEEEEe
Q 040753 53 KGSNEVYLMDLRGNVLFTILR 73 (198)
Q Consensus 53 s~~~~~~l~D~~G~~Ll~i~~ 73 (198)
...-++.++|.+|++|.+++=
T Consensus 43 ~G~WrV~V~~~~G~~l~~~~F 63 (66)
T PF11141_consen 43 PGDWRVEVVDEDGQVLGSLRF 63 (66)
T ss_pred CcCEEEEEEcCCCCEEEEEEE
Confidence 346789999999999988763
No 84
>PRK12818 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=20.05 E-value=1.4e+02 Score=25.41 Aligned_cols=43 Identities=26% Similarity=0.350 Sum_probs=29.1
Q ss_pred eEEeCCC-eEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 27 LVMQGNG-CTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 27 ~~~sg~~-ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.++|++ |.|.+.+|+..|+=+|.+ .+...-.|.+++|.+|+-
T Consensus 95 lAI~G~GFF~V~~~~G~~~YTR~G~F-~~d~~G~Lvt~~G~~vlg 138 (256)
T PRK12818 95 FAIQGRGFFTVERNAGNNYYTRDGHF-HVDTQGYLVNDSGYYVLG 138 (256)
T ss_pred EEECCCceEEEEcCCCCeEEeeCCCe-eECCCCCEEcCCCCEEec
Confidence 4456644 566667788788877764 455555677888887774
Done!