Query 040753
Match_columns 198
No_of_seqs 106 out of 424
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 18:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zxu_A AT5G01750 protein; PFAM 100.0 4.9E-37 1.7E-41 254.8 20.8 169 14-197 34-213 (217)
2 1zxu_A AT5G01750 protein; PFAM 97.5 0.00044 1.5E-08 56.3 9.0 86 14-105 59-150 (217)
3 2v2f_A Penicillin binding prot 56.7 6.7 0.00023 20.6 1.9 13 35-47 8-20 (26)
4 2ln7_A LPXTG-SITE transpeptida 39.5 6 0.00021 29.8 -0.1 22 55-76 79-100 (147)
5 4he6_A Peptidase family U32; u 37.8 37 0.0013 22.9 3.8 34 37-71 15-50 (89)
6 2h1z_A Hybrid atracotoxin; bet 37.0 24 0.00081 20.7 2.2 12 38-49 28-39 (39)
7 1hzt_A Isopentenyl diphosphate 35.0 24 0.00084 26.6 2.8 55 32-87 4-68 (190)
8 3dzw_A Agglutinin; lectin, man 30.9 1.3E+02 0.0044 20.6 6.4 7 33-39 30-36 (109)
9 3osv_A Flagellar basal-BODY RO 30.8 47 0.0016 24.3 3.7 16 57-72 40-55 (138)
10 2dho_A Isopentenyl-diphosphate 29.6 60 0.002 25.9 4.4 55 31-86 26-93 (235)
11 3r0e_B Lectin; carbohydrate bi 28.3 1.5E+02 0.0051 20.5 6.2 10 60-69 91-100 (110)
12 1q27_A Putative nudix hydrolas 28.2 65 0.0022 23.4 4.1 53 32-85 7-67 (171)
13 3fn5_A Sortase A; sortase-fold 28.1 14 0.00047 29.1 0.3 19 55-73 102-120 (187)
14 3oe3_A Putative periplasmic pr 28.1 1.1E+02 0.0039 21.4 5.1 40 25-70 45-84 (98)
15 2wzo_A Transforming growth fac 27.8 1.2E+02 0.0039 22.5 5.5 28 2-29 18-47 (146)
16 3mez_B Mannose-specific lectin 27.5 1.6E+02 0.0053 20.5 6.0 38 32-69 34-71 (113)
17 2kw8_A LPXTG-SITE transpeptida 27.4 14 0.00047 28.0 0.2 21 55-75 92-112 (158)
18 2pny_A Isopentenyl-diphosphate 26.3 73 0.0025 25.6 4.4 54 31-85 37-103 (246)
19 3h9n_A Ribosome maturation fac 25.4 1.1E+02 0.0039 23.3 5.2 13 61-73 106-118 (177)
20 3r0e_A Lectin; carbohydrate bi 24.9 1.6E+02 0.0054 20.3 5.5 38 32-70 59-96 (109)
21 1axh_A Atracotoxin-HVI, ACTX-H 23.9 44 0.0015 19.3 1.8 11 38-48 27-37 (37)
22 3rcc_A Sortase SRTA; sortase f 22.5 16 0.00056 27.8 -0.3 21 55-75 84-104 (160)
23 3g66_A Sortase C; pilus, trans 22.0 28 0.00095 27.9 1.0 20 55-74 132-151 (212)
24 4g1j_A Sortase family protein; 21.9 28 0.00095 28.1 1.0 20 55-74 140-159 (222)
25 4h3o_A Lectin; cadmium, plant 21.8 2E+02 0.0067 19.7 6.5 13 33-45 62-74 (105)
26 1t2w_A Sortase; transpeptidase 21.3 29 0.00099 25.7 0.9 20 55-74 78-97 (145)
27 3my2_A Lipopolysaccharide expo 20.7 71 0.0024 24.3 3.1 57 19-75 16-84 (175)
28 3isy_A Bsupi, intracellular pr 20.6 50 0.0017 24.1 2.1 34 17-50 21-62 (120)
No 1
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=100.00 E-value=4.9e-37 Score=254.79 Aligned_cols=169 Identities=20% Similarity=0.355 Sum_probs=131.3
Q ss_pred CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCCC
Q 040753 14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDGS 92 (198)
Q Consensus 14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~~ 92 (198)
+.+|++|+||+|.+++++++|+|+|++|+++|+|+++.+++++++.|+|++|++|++|++|.+ ++++ |++|.++..+
T Consensus 34 ~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~~~~~~-~~v~~~~~~~- 111 (217)
T 1zxu_A 34 APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDR-WQVFRGGSTD- 111 (217)
T ss_dssp CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC------CE-EEEEETTCCC-
T ss_pred CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEccccccCcE-EEEEcCCCCC-
Confidence 567999999999999999999999999999999999999999999999999999999999998 9999 9999987331
Q ss_pred CCCCccCeEEEeee--------EEEEEcCCC--ceeeEEEEeeeccCCCCcCccceeEEEeCCCCeEEEEEEeeeecCCC
Q 040753 93 NLNKEKPSFEVTKK--------GEITLLSNN--EASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGS 162 (198)
Q Consensus 93 ~~~~~~~~f~vk~~--------~~v~l~~~~--~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk~~~~~~ 162 (198)
.++++|+||++ ++|+.+++. +.++|+|+ |++++++ |+|+++++|++||+|+|||.. .
T Consensus 112 ---~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~-------G~~~~~~-f~I~~~~~~~~Va~I~kk~~~--~ 178 (217)
T 1zxu_A 112 ---QRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVK-------GSWLERS-CVVYAGESDAIVAQMHRKHTV--Q 178 (217)
T ss_dssp ---GGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEE-------SCTTTTC-CEEEETTTCCEEEEEEEC------
T ss_pred ---CCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEE-------EeEeCCE-EEEEECCCCEEEEEEEeeeec--c
Confidence 12467777665 456665432 35789999 9999999 999997337999999999765 7
Q ss_pred ceeeecceEEEEEeCCCCHHHHHHHHHHhhccccc
Q 040753 163 GVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRL 197 (198)
Q Consensus 163 ~~~~~~dty~l~V~pgvD~a~i~aLvv~lD~i~~~ 197 (198)
+++++.|+|.|+|.|++|.+||||+|++||+++++
T Consensus 179 ~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~ 213 (217)
T 1zxu_A 179 SVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRE 213 (217)
T ss_dssp ----CBCSEEEEECTTSBHHHHHHHHHHHHHHHC-
T ss_pred ccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhh
Confidence 88899999999999999999999999999999764
No 2
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=97.50 E-value=0.00044 Score=56.33 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=58.8
Q ss_pred CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCC----eEEEEEeee-e-ecCeeeEEEeC
Q 040753 14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGN----VLFTILRRV-R-VFGRLWRGYKG 87 (198)
Q Consensus 14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~----~Ll~i~~k~-l-~~~~~w~~~~g 87 (198)
...+..|.|..+.+++ ++.+.|+|.+|++++++..+.+++..+..+.++.+. +|++|+++. + +.+. |+++.+
T Consensus 59 ~~G~~vf~V~~~~~~~-~~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~-~~V~~~ 136 (217)
T 1zxu_A 59 VNGNLLFKVKEPVFGL-HDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK-LDVFLG 136 (217)
T ss_dssp TTSCEEEEEECSSTTC-CSEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CC-EEEEET
T ss_pred CCCCEEEEEEccccCC-CCEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCe-EEEEEC
Confidence 4567889998876555 578999999999999999999899999999998765 799999884 4 7788 999987
Q ss_pred CCCCCCCCCccCeEEEee
Q 040753 88 DNDGSNLNKEKPSFEVTK 105 (198)
Q Consensus 88 ~~~~~~~~~~~~~f~vk~ 105 (198)
+..+ .+.+.|+|+-
T Consensus 137 ~~~~----~~~~~~~I~G 150 (217)
T 1zxu_A 137 HNKD----EKRCDFRVKG 150 (217)
T ss_dssp TCCC-----CCCSEEEES
T ss_pred CCCC----CCceEEEEEE
Confidence 5321 1235566653
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=56.68 E-value=6.7 Score=20.59 Aligned_cols=13 Identities=0% Similarity=0.526 Sum_probs=10.5
Q ss_pred EEEeCCCCEEEEE
Q 040753 35 TVFNENGEIVYRI 47 (198)
Q Consensus 35 tV~D~~G~~vyrV 47 (198)
.|||.+|+++..+
T Consensus 8 ~IYD~~g~~i~~l 20 (26)
T 2v2f_A 8 KIYDNKNQLIADL 20 (26)
T ss_pred EEEeCCCCEeeec
Confidence 5888888888776
No 4
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=39.45 E-value=6 Score=29.75 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=12.7
Q ss_pred CCeEEEEcCCCCeEEEEEeeee
Q 040753 55 SNEVYLMDLRGNVLFTILRRVR 76 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k~l 76 (198)
++++.|.+..+.-.+.+.+...
T Consensus 79 GD~i~v~~~~~~~~Y~V~~~~v 100 (147)
T 2ln7_A 79 KDTLVLEYDNKTYTYEIQKIWI 100 (147)
T ss_dssp TCEEEEEETTEEEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEeEEE
Confidence 5666666666555555554433
No 5
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=37.82 E-value=37 Score=22.90 Aligned_cols=34 Identities=18% Similarity=0.153 Sum_probs=26.1
Q ss_pred EeCC-CCEEEEEEcccCCCCCeEEEEcCCC-CeEEEE
Q 040753 37 FNEN-GEIVYRIDNYDNKGSNEVYLMDLRG-NVLFTI 71 (198)
Q Consensus 37 ~D~~-G~~vyrVdg~~~s~~~~~~l~D~~G-~~Ll~i 71 (198)
+|.+ |.....+++++ +.++.+.++-+.| +.-+++
T Consensus 15 ~~~~~g~~~ie~rN~f-~~GD~iEi~~P~g~~~~~~v 50 (89)
T 4he6_A 15 YDPETGIATVQQRNHF-RPGDEVEFFGPEIENFTQVI 50 (89)
T ss_dssp EETTTTEEEEEESSCB-CTTCEEEEESTTSCCEEEEC
T ss_pred EeCCCCEEEEEEcCCc-CCCCEEEEEcCCCCcEEEEe
Confidence 3444 77888899985 7799999999999 555555
No 6
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=37.00 E-value=24 Score=20.68 Aligned_cols=12 Identities=50% Similarity=0.703 Sum_probs=10.3
Q ss_pred eCCCCEEEEEEc
Q 040753 38 NENGEIVYRIDN 49 (198)
Q Consensus 38 D~~G~~vyrVdg 49 (198)
++||+.|||.+.
T Consensus 28 NeNGntV~rC~~ 39 (39)
T 2h1z_A 28 NENGHTVYYCRA 39 (39)
T ss_dssp CSSCCEEEEEEC
T ss_pred ccCCCEEEeecC
Confidence 689999999863
No 7
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Probab=34.98 E-value=24 Score=26.56 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=19.0
Q ss_pred CCeEEEeCCCCEEEEEEcccCCC-------CCeEEEEcCCCCeEEEEEeeee--ecCeeeEE-EeC
Q 040753 32 NGCTVFNENGEIVYRIDNYDNKG-------SNEVYLMDLRGNVLFTILRRVR--VFGRLWRG-YKG 87 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~s~-------~~~~~l~D~~G~~Ll~i~~k~l--~~~~~w~~-~~g 87 (198)
.-+.|+|++|+++..+.-..... .-...+.+.+|+.|+.-|...- +.+. |.. --|
T Consensus 4 E~~~v~d~~~~~~g~~~r~~~~~~~~~~~~~v~~~i~~~~g~vLl~~R~~~~~~~~g~-w~~~PgG 68 (190)
T 1hzt_A 4 EHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGV-WTNSVCG 68 (190)
T ss_dssp ---------------------------CEECEEEEEECTTCCEEEEEECTTCSSSTTC-EEESEEE
T ss_pred eEEEEECCCCCEeeeEEHhhhcccCCceEEEEEEEEEcCCCEEEEEEeCCCCCCCCCc-ccCcccc
Confidence 45789999999988776654431 2245678888887775443322 3456 887 444
No 8
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A*
Probab=30.87 E-value=1.3e+02 Score=20.65 Aligned_cols=7 Identities=0% Similarity=0.292 Sum_probs=3.3
Q ss_pred CeEEEeC
Q 040753 33 GCTVFNE 39 (198)
Q Consensus 33 ~ftV~D~ 39 (198)
.+.+||.
T Consensus 30 nLvly~~ 36 (109)
T 3dzw_A 30 NLVLYDV 36 (109)
T ss_dssp CEEEEET
T ss_pred cEEEEeC
Confidence 4445444
No 9
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=30.75 E-value=47 Score=24.34 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=9.6
Q ss_pred eEEEEcCCCCeEEEEE
Q 040753 57 EVYLMDLRGNVLFTIL 72 (198)
Q Consensus 57 ~~~l~D~~G~~Ll~i~ 72 (198)
++.|+|.+|+.+-++.
T Consensus 40 ~v~I~d~~G~~V~t~~ 55 (138)
T 3osv_A 40 WVNVYDDKGTVVNRIN 55 (138)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred EEEEEcCCCCEEEEEE
Confidence 4556666666666654
No 10
>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
Probab=29.61 E-value=60 Score=25.90 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=35.5
Q ss_pred CCCeEEEeCCCCEEEEEEcccCC--------C-C--CeEEEEcCCCCeEEEEEeeee--ecCeeeEEEe
Q 040753 31 GNGCTVFNENGEIVYRIDNYDNK--------G-S--NEVYLMDLRGNVLFTILRRVR--VFGRLWRGYK 86 (198)
Q Consensus 31 g~~ftV~D~~G~~vyrVdg~~~s--------~-~--~~~~l~D~~G~~Ll~i~~k~l--~~~~~w~~~~ 86 (198)
.+-+.|+|++|+++-++.-+... . + -.+.+.|.+|+.|++-|...- +-+. |..--
T Consensus 26 ~E~~~lvd~~~~~~G~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLq~R~~~k~~~pg~-W~~p~ 93 (235)
T 2dho_A 26 AEMCILIDENDNKIGAETKKNCHLNENIEKGLLHRAFSVFLFNTENKLLLQQRSDAKITFPGC-FTNTC 93 (235)
T ss_dssp CCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTC-EESSE
T ss_pred CcEEEEEcCCCCEEEEEEhHHhccccccCCCceEEEEEEEEEcCCCEEEEEEecCcCCCCCCc-EEecc
Confidence 46699999999999998655321 1 1 233577999988875443322 3445 87443
No 11
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=28.33 E-value=1.5e+02 Score=20.49 Aligned_cols=10 Identities=10% Similarity=0.175 Sum_probs=4.1
Q ss_pred EEcCCCCeEE
Q 040753 60 LMDLRGNVLF 69 (198)
Q Consensus 60 l~D~~G~~Ll 69 (198)
.++.+|+.++
T Consensus 91 ~L~~dGNlvl 100 (110)
T 3r0e_B 91 ILQDDGFGVI 100 (110)
T ss_dssp EECTTSCEEE
T ss_pred EEcCCccEEE
Confidence 3444444433
No 12
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Probab=28.18 E-value=65 Score=23.42 Aligned_cols=53 Identities=15% Similarity=0.112 Sum_probs=32.9
Q ss_pred CCeEEEeCCCCEEEEEEcccC------CCCCeEEEEcCCCCeEEEEEeeee--ecCeeeEEE
Q 040753 32 NGCTVFNENGEIVYRIDNYDN------KGSNEVYLMDLRGNVLFTILRRVR--VFGRLWRGY 85 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~------s~~~~~~l~D~~G~~Ll~i~~k~l--~~~~~w~~~ 85 (198)
.-+.|+|.+|+++-.+.-... ...-...+.+.+|+.|+.-+...- +.+. |..+
T Consensus 7 E~~~~~d~~~~~~g~~~r~~~~l~~~~~~~v~v~i~~~~~~vLl~~r~~~~~~~~g~-w~~~ 67 (171)
T 1q27_A 7 ERLDLVNERDEVVGQILRTDPALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNA-LDVS 67 (171)
T ss_dssp SEEEEESSSSCEEEEEESSCTTSCTTSCEEEEEEEEETTTEEEECCSCCSSSCCCCS-CCCS
T ss_pred eeeeeecCCCCEeceEEhhhhccccccceEEEEEEECCCCeEEEEEecCCCCCCCCc-cccc
Confidence 568999999999998776654 112344567888866554332222 3455 7633
No 13
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=28.12 E-value=14 Score=29.10 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=8.9
Q ss_pred CCeEEEEcCCCCeEEEEEe
Q 040753 55 SNEVYLMDLRGNVLFTILR 73 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~ 73 (198)
++++.|.+..+.-.+++.+
T Consensus 102 GD~I~v~~~~~~~~Y~V~~ 120 (187)
T 3fn5_A 102 GMSIYLTDKEKIYEYIIKD 120 (187)
T ss_dssp TCEEEEECSSEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEee
Confidence 4455555554444444443
No 14
>3oe3_A Putative periplasmic protein; beta barrel, hydrolase inhibitor; 1.51A {Salmonella enterica}
Probab=28.06 E-value=1.1e+02 Score=21.42 Aligned_cols=40 Identities=8% Similarity=0.069 Sum_probs=27.1
Q ss_pred EEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 25 KSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 25 K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
...+=||-.|.--|.+|..+++-+| ++..|.|..|+|++.
T Consensus 45 qv~SASGarY~~~~~~~~y~lwtKG------~eA~L~~~~g~~i~~ 84 (98)
T 3oe3_A 45 LMKMASGANYEAIDKNYTYKLYTKG------KTAELVEGDDKPVLS 84 (98)
T ss_dssp EEEC--CEEEEESSTTCCCEEEEET------TEEEEEETTTEEEEE
T ss_pred EEEecCcceEEccCCCCcEEEEEeC------CcEEEEECCCCEEEc
Confidence 3456667777665667777777666 567888888888864
No 15
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens}
Probab=27.82 E-value=1.2e+02 Score=22.50 Aligned_cols=28 Identities=11% Similarity=-0.125 Sum_probs=16.2
Q ss_pred ceecCCCC--CCCCCCceeEEEEEEEEeEE
Q 040753 2 AKVRPLPI--SVEAASKRESFTVWMKSLVM 29 (198)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~ltv~~K~~~~ 29 (198)
++|.|..+ .++..-.|+=|+..++.++.
T Consensus 18 G~i~~~~~~fh~~~~IyPvGy~~~R~y~s~ 47 (146)
T 2wzo_A 18 GEIITDRPGFHDESAIYPVGYCSTRIYASM 47 (146)
T ss_dssp EECCCSSGGGBCSSCBCCEEEEEEEEEECS
T ss_pred eeEccCCCCccCCCceeCCCEEEEEEEecc
Confidence 45555432 12235568888888876554
No 16
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=27.48 E-value=1.6e+02 Score=20.45 Aligned_cols=38 Identities=5% Similarity=0.035 Sum_probs=15.7
Q ss_pred CCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEE
Q 040753 32 NGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLF 69 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll 69 (198)
+.+.+||.+...++..-+..-........++.+|+.++
T Consensus 34 GNLvL~~~~~~~~vWssnt~~~~~~~~l~l~~dGNLVl 71 (113)
T 3mez_B 34 CNLVLTKGSKTNIVWESGTSGRGQHCFMRLGHSGELDI 71 (113)
T ss_dssp SCEEEEETTTTEEEEECCCTTSCSSCEEEECTTSCEEE
T ss_pred CEEEEEECCCCEEEEECCcccCCcCEEEEEeCCCcEEE
Confidence 46666665323333433332111222333444555444
No 17
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=27.35 E-value=14 Score=27.97 Aligned_cols=21 Identities=14% Similarity=0.343 Sum_probs=12.7
Q ss_pred CCeEEEEcCCCCeEEEEEeee
Q 040753 55 SNEVYLMDLRGNVLFTILRRV 75 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k~ 75 (198)
++.+.+.+..+.-.+++....
T Consensus 92 Gd~i~v~~~~~~~~Y~V~~~~ 112 (158)
T 2kw8_A 92 GDKIYLYDNENEYEYAVTGVS 112 (158)
T ss_dssp TCEEEEECSSEEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEEE
Confidence 677777776655555555443
No 18
>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}
Probab=26.28 E-value=73 Score=25.62 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=34.8
Q ss_pred CCCeEEEeCCCCEEEEEEcccCC--------C-C--CeEEEEcCCCCeEEEEEeee-e-ecCeeeEEE
Q 040753 31 GNGCTVFNENGEIVYRIDNYDNK--------G-S--NEVYLMDLRGNVLFTILRRV-R-VFGRLWRGY 85 (198)
Q Consensus 31 g~~ftV~D~~G~~vyrVdg~~~s--------~-~--~~~~l~D~~G~~Ll~i~~k~-l-~~~~~w~~~ 85 (198)
.+-+.|+|++|+++.++.-+... . + -.+.+.|.+|+.|++-|... . +.+. |..-
T Consensus 37 ~E~~~lvd~~~~~iG~~~r~~~h~~~~~~~g~~h~av~v~v~~~~g~lLLqrRs~~K~~~pG~-W~~p 103 (246)
T 2pny_A 37 EEMLIVVDENDKVIGADTKRNCHLNENIEKGLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGY-FTDS 103 (246)
T ss_dssp TCEEEEECTTCCEEEEEEHHHHTBHHHHTTTCCEEEEEEEEECTTCCEEEEEECTTCSSSTTC-BCCS
T ss_pred cceEEEEcCCCCEEEEEEhHHhccccccCCCcEEEEEEEEEEeCCCEEEEEEecCCCCCCCCc-eEec
Confidence 45699999999999998665321 1 1 23457899998777544332 2 3445 8743
No 19
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=25.41 E-value=1.1e+02 Score=23.34 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=5.7
Q ss_pred EcCCCCeEEEEEe
Q 040753 61 MDLRGNVLFTILR 73 (198)
Q Consensus 61 ~D~~G~~Ll~i~~ 73 (198)
.|.+|..|-++..
T Consensus 106 ~~~~g~~lG~V~~ 118 (177)
T 3h9n_A 106 VNLEGYTMGTVTE 118 (177)
T ss_dssp EETTCCEEEEEEE
T ss_pred EeCCCCEEEEEEE
Confidence 3444444444443
No 20
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara}
Probab=24.87 E-value=1.6e+02 Score=20.33 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=15.6
Q ss_pred CCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEE
Q 040753 32 NGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFT 70 (198)
Q Consensus 32 ~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~ 70 (198)
+.+.++|.+|.++..-.... .-...+..++.+|+.++.
T Consensus 59 GnLvl~d~~~~~vWss~t~~-~~~~~~~~L~~dGNlvly 96 (109)
T 3r0e_A 59 GELVIKNGDGSTVWKSGAQS-VKGNYAAVVHPDGRLVVF 96 (109)
T ss_dssp SCEEEECTTSCEEEECCCCC-SSSCCEEEEETTTEEEEE
T ss_pred CeEEEEeCCCCEEEcCCCcC-CCcCEEEEEcCCCeEEEE
Confidence 34555555554443221111 111233444555655544
No 21
>1axh_A Atracotoxin-HVI, ACTX-HVI; neurotoxin, insecticidal toxin, cystine knot, funnel-WEB; NMR {Hadronyche versuta} SCOP: g.3.6.2
Probab=23.94 E-value=44 Score=19.27 Aligned_cols=11 Identities=64% Similarity=0.839 Sum_probs=9.5
Q ss_pred eCCCCEEEEEE
Q 040753 38 NENGEIVYRID 48 (198)
Q Consensus 38 D~~G~~vyrVd 48 (198)
++|||.|+|.+
T Consensus 27 NeNGntV~RC~ 37 (37)
T 1axh_A 27 NENGNTVKRCD 37 (37)
T ss_dssp CSSSCEEEEEC
T ss_pred ccCCcEeeecC
Confidence 68999999974
No 22
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=22.51 E-value=16 Score=27.78 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=10.5
Q ss_pred CCeEEEEcCCCCeEEEEEeee
Q 040753 55 SNEVYLMDLRGNVLFTILRRV 75 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k~ 75 (198)
++++.|.+..+.-.+++.+..
T Consensus 84 GD~i~v~~~~~~~~Y~V~~~~ 104 (160)
T 3rcc_A 84 GMKVYLTDKSKVYTYTITEIS 104 (160)
T ss_dssp TCEECCBCSSCBCCEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeEE
Confidence 455555555555555554443
No 23
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=21.98 E-value=28 Score=27.92 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=10.3
Q ss_pred CCeEEEEcCCCCeEEEEEee
Q 040753 55 SNEVYLMDLRGNVLFTILRR 74 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k 74 (198)
++.+.|.+..|.-.++|.+.
T Consensus 132 GD~I~v~~~~~~~~Y~V~~~ 151 (212)
T 3g66_A 132 GDIFYLHVLDQVLAYQVDQI 151 (212)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCeEEEEEEeeE
Confidence 55555555555444444443
No 24
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=21.91 E-value=28 Score=28.14 Aligned_cols=20 Identities=10% Similarity=0.443 Sum_probs=9.7
Q ss_pred CCeEEEEcCCCCeEEEEEee
Q 040753 55 SNEVYLMDLRGNVLFTILRR 74 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k 74 (198)
++.+.|.+..|.-.+++.+.
T Consensus 140 GD~I~v~~~~~~~~Y~V~~~ 159 (222)
T 4g1j_A 140 GDRFYIEHIGGKIAYQVDQI 159 (222)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEeeE
Confidence 45555555554444444433
No 25
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=21.83 E-value=2e+02 Score=19.67 Aligned_cols=13 Identities=15% Similarity=0.577 Sum_probs=6.0
Q ss_pred CeEEEeCCCCEEE
Q 040753 33 GCTVFNENGEIVY 45 (198)
Q Consensus 33 ~ftV~D~~G~~vy 45 (198)
.+.++|.+|+++.
T Consensus 62 nLvL~d~~~~~vW 74 (105)
T 4h3o_A 62 NFVVYDSSGRSLW 74 (105)
T ss_dssp CEEEECTTCCEEE
T ss_pred cEEEECCCcEEEE
Confidence 3444444444444
No 26
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=21.31 E-value=29 Score=25.65 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=10.7
Q ss_pred CCeEEEEcCCCCeEEEEEee
Q 040753 55 SNEVYLMDLRGNVLFTILRR 74 (198)
Q Consensus 55 ~~~~~l~D~~G~~Ll~i~~k 74 (198)
++++.|.+..+.-.+++.+.
T Consensus 78 Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 78 GSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp TCEEEEEETTEEEEEEEEEE
T ss_pred CCEEEEEECCEEEEEEEEEE
Confidence 55666666555444444443
No 27
>3my2_A Lipopolysaccharide export system protein LPTC; lipopolysaccharide export pathway, structural genomics scottish structural proteomics facility; 2.20A {Escherichia coli} PDB: 4b54_A
Probab=20.67 E-value=71 Score=24.27 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=20.9
Q ss_pred EEEEEEEEeEEeCCCeE--EEeCCCCEEEEEEcccCCC----------CCeEEEEcCCCCeEEEEEeee
Q 040753 19 SFTVWMKSLVMQGNGCT--VFNENGEIVYRIDNYDNKG----------SNEVYLMDLRGNVLFTILRRV 75 (198)
Q Consensus 19 ~ltv~~K~~~~sg~~ft--V~D~~G~~vyrVdg~~~s~----------~~~~~l~D~~G~~Ll~i~~k~ 75 (198)
.+++....-.+...+|+ +||++|++.|++.+.-+.. .-.+.++|..|.+..+|+.+.
T Consensus 16 ~~~~~~~~Pdy~~~~~~~~~~d~~G~l~~~l~A~~~~hy~~~~~t~~~~P~~~~y~~~~~~~w~i~A~~ 84 (175)
T 3my2_A 16 QVVVNNNDPTYKSEHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADK 84 (175)
T ss_dssp ---------------------------CEEEECSSEEEETTTTEEEEESCEEEEECTTCCEEEEEECSE
T ss_pred cccCCCCCCcEEEEeeEEEEECCCCCEEEEEEeeeEEEecCCCCEEEeccEEEEECCCCceeEEEEeCe
Confidence 34444545556566665 6999999999999875321 335566676766777776543
No 28
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=20.61 E-value=50 Score=24.11 Aligned_cols=34 Identities=9% Similarity=0.175 Sum_probs=22.0
Q ss_pred eeEEEEEEE-----EeEEeC--C-CeEEEeCCCCEEEEEEcc
Q 040753 17 RESFTVWMK-----SLVMQG--N-GCTVFNENGEIVYRIDNY 50 (198)
Q Consensus 17 ~~~ltv~~K-----~~~~sg--~-~ftV~D~~G~~vyrVdg~ 50 (198)
..+|+|..- .+.|+. . +|.|+|.+|+.|||-..-
T Consensus 21 ~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~ 62 (120)
T 3isy_A 21 KFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHKERYRYSKE 62 (120)
T ss_dssp EEEEEEEECSSSCEEEEESSSCCEEEEEECTTCCEEEETTTT
T ss_pred EEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCCEEEEcccc
Confidence 445555522 245543 3 789999999999986554
Done!