BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040754
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 201 bits (510), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 139/426 (32%), Positives = 208/426 (48%), Gaps = 50/426 (11%)
Query: 7 SIENIKPSSPTPDHQRTHKLSFIDQLNPGAYFSIILFY--------SAGASSERLKKSLS 58
S E I PSSPTP + +K+S +DQL + ILFY +S+ LK+SLS
Sbjct: 9 SEELILPSSPTPQSLKCYKISHLDQLLLTCHIPFILFYPNPLDSNLDPAQTSQHLKQSLS 68
Query: 59 ETLTHFYPFAGQFKDNHFVDCDDHGVTFIEAHFDRGDMSEVIQQ-AKTNILEQLIPCKPH 117
+ LTHFYP AG+ N VDC+D GV F+EA + +S+ IQ + L+Q +P +
Sbjct: 69 KVLTHFYPLAGRINVNSSVDCNDSGVPFVEARV-QAQLSQAIQNVVELEKLDQYLPSAAY 127
Query: 118 ESTRVEHN----LIVQVNYFGCGGMAIGVCFHHKVADAATAANFLKTWGLHARGAGAGDT 173
++E N L V++++F CGG AIGV HK+AD + A FL W RG
Sbjct: 128 PGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVL 187
Query: 174 NDFKHAIYDSNSIFPAQDLPDMSVNLGLGIVLVRFCASLREKI--VQAEPGLGRP----S 227
+F A + P + P + +V+ RF +EKI ++A+ S
Sbjct: 188 PNFDLA---ARHFPPVDNTPSPELVPDENVVMKRFVFD-KEKIGALRAQASSASEEKNFS 243
Query: 228 RVEVVSSVILGALLAAYRGSRDGDEEFTTAPLTHVTAIIAVNLRKRMNPPLPEESFGNIC 287
RV++V + I ++ R +F + AVNLR RMNPPLP + GNI
Sbjct: 244 RVQLVVAYIWKHVIDVTRAKYGAKNKFVV--------VQAVNLRSRMNPPLPHYAMGNIA 295
Query: 288 SAAFLNLPIDRDHDHEKKINHGSLAGQLHQSIRMVDDQFVRKLYVEGEILNIRKAVEAQG 347
+ F + + D D L G L S+ +D +L K +
Sbjct: 296 TLLFAAVDAEWDKDFP------DLIGPLRTSLEKTEDDHNHELL---------KGMTCLY 340
Query: 348 SPKSNKVFVISSWCKMPFYEADFGWGKPVSIGVGTRFTE--AAVLVDGCQTDGIEAWVGL 405
+ ++ +SWC++ FY+ DFGWGKP+S T F + AA+L+D DG+EAW+ +
Sbjct: 341 ELEPQELLSFTSWCRLGFYDLDFGWGKPLS-ACTTTFPKRNAALLMDTRSGDGVEAWLPM 399
Query: 406 SKQDMA 411
++ +MA
Sbjct: 400 AEDEMA 405
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 170/406 (41%), Gaps = 73/406 (17%)
Query: 53 LKKSLSETLTHFYPFAGQF---------KDNHFVDCDDHGVTFIEAHFDRGDMSEVIQQA 103
+K SLS TL HFYPF G+ + +V+ D VTF E + D +++
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGN-HPR 123
Query: 104 KTNILEQLIPCKPHESTRVEHNL-----IVQVNYFGCGGMAIGVCFHHKVADAATAANFL 158
+ L+P ESTR+ + VQV F G+AIG+ HH + DA+T FL
Sbjct: 124 NCDKFYDLVPIL-GESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query: 159 KTWGLHARGAGAGDTNDFKHA---IYDS--------------------NSIFPAQDLPDM 195
K W AR +G D + + +YD N + Q L
Sbjct: 183 KAWTSIAR-SGNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAGP 241
Query: 196 SVNLGLGIVLVRFCAS-LREKIVQAEPGLGRPSRVEVVSSVILGALLAAYRGSRDGDEEF 254
S L +L R + L+++++ P L S V + I + SR+ +
Sbjct: 242 SDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCI----AKSRNDKLQL 297
Query: 255 TTAPLTHVTAIIAVNLRKRMNPPLPEESFGNI---CSA-AFLNLPIDRDHDHEKKINHGS 310
P ++ R RM PP+P FGN C+A A NL I + E I
Sbjct: 298 FGFP---------IDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGK----EGFITAAK 344
Query: 311 LAGQ-LHQSIRMVDDQFVRKLYVEGEILNIRKAVEAQGSPKSNKVFVISSWCKMPFYEAD 369
L G+ LH+++ D ++ + E N + ++G P + + +S K+ FY+ D
Sbjct: 345 LIGENLHKTLTDYKDGVLKD---DMESFN---DLVSEGMPTT--MTWVSGTPKLRFYDMD 396
Query: 370 FGWGKPVSIGVGTRFTEAAVLVDGCQ--TDGIEAWVGLSKQDMARF 413
FGWGKP + + A+ ++ C+ + +E V +S M F
Sbjct: 397 FGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGVCISATQMEDF 442
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 163/396 (41%), Gaps = 71/396 (17%)
Query: 53 LKKSLSETLTHFYPFAGQF---------KDNHFVDCDDHGVTFIEAHFDRGDMSEVIQQA 103
+K SLS TL HFYPF G+ + +V+ D VTF E + D +++
Sbjct: 65 IKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGN-HPR 123
Query: 104 KTNILEQLIPCKPHESTRVEHNL-----IVQVNYFGCGGMAIGVCFHHKVADAATAANFL 158
+ L+P ESTR+ + VQV F G+AIG+ HH + DA+T FL
Sbjct: 124 NCDKFYDLVPIL-GESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFL 182
Query: 159 KTWGLHARGAGAGDTNDFKHA---IYDS--------------------NSIFPAQDLPDM 195
K W AR +G D + + +YD N + Q L
Sbjct: 183 KAWTSIAR-SGNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAGP 241
Query: 196 SVNLGLGIVLVR-FCASLREKIVQAEPGLGRPSRVEVVSSVILGALLAAYRGSRDGDEEF 254
S L +L R L+++++ P L S V + I + SR+ +
Sbjct: 242 SDKLRATFILTRAVINQLKDRVLAQLPTLEYVSSFTVACAYIWSCIAK----SRNDKLQL 297
Query: 255 TTAPLTHVTAIIAVNLRKRMNPPLPEESFGNI---CSA-AFLNLPIDRDHDHEKKINHGS 310
P ++ R R PP+P FGN C+A A NL I + E I
Sbjct: 298 FGFP---------IDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGK----EGFITAAK 344
Query: 311 LAGQ-LHQSIRMVDDQFVRKLYVEGEILNIRKAVEAQGSPKSNKVFVISSWCKMPFYEAD 369
L G+ LH+++ D ++ + E N + ++G P + +S K+ FY+ D
Sbjct: 345 LIGENLHKTLTDYKDGVLKD---DXESFN---DLVSEGXPTTXT--WVSGTPKLRFYDXD 396
Query: 370 FGWGKPVSIGVGTRFTEAAVLVDGCQTDGIEAWVGL 405
FGWGKP + + A+ ++ C+ + +G+
Sbjct: 397 FGWGKPKKLETVSIDHNGAISINSCKESNEDLEIGV 432
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 1 MELRFSSIENIKPSSPTPDHQRTHKLSFIDQLNPGAYFSIILFYSAGASS-----ERLKK 55
M++ ++P+ TP R S +D + P + + FY SS + LK
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 63
Query: 56 SLSETLTHFYPFAGQFKDNH----FVDCDDHGVTFIEAHFDRGDMSEVIQQAKTNILEQL 111
+LS L FYP AG+ K + ++C+ GV F+EA D G + + A T L +L
Sbjct: 64 ALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESD-GVVDDFGDFAPTLELRRL 122
Query: 112 IPCKPHESTRVEHNLIV-QVNYFGCGGMAIGVCFHHKVADAATAANFLKTWGLHARG 167
IP + + L+V QV YF CGG+++GV H AD + +F+ +W ARG
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG 179
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 266 IAVNLRKRMNPPLPEESFGNICSAAFLNLPIDRDHDHE-KKINHGSLAGQLHQSIRMVDD 324
IA + R R+ P LP FGN+ F PI D E K + + A ++H ++ +D+
Sbjct: 287 IATDGRARLRPSLPPGYFGNVI---FTATPIAIAGDLEFKPVWYA--ASKIHDALARMDN 341
Query: 325 QFVRKLYVEGEILNIRKAVEAQGSPKSNKVFVISSWCKMPFYEADFGWGKPVSIGVG 381
++R E+ KA+ I+SW ++P ++ADFGWG+P+ +G G
Sbjct: 342 DYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPG 398
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 86/177 (48%), Gaps = 13/177 (7%)
Query: 1 MELRFSSIENIKPSSPTPDHQRTHKLSFIDQLNPGAYFSIILFYSAGASS-----ERLKK 55
M++ ++P+ TP R S +D + P + + FY SS + LK
Sbjct: 3 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 60
Query: 56 SLSETLTHFYPFAGQFKDNH----FVDCDDHGVTFIEAHFDRGDMSEVIQQAKTNILEQL 111
+LS L FYP AG+ K + ++C+ GV F+EA D G + + A T L +L
Sbjct: 61 ALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESD-GVVDDFGDFAPTLELRRL 119
Query: 112 IPCKPHESTRVEHNLIV-QVNYFGCGGMAIGVCFHHKVADAATAANFLKTWGLHARG 167
IP + + L+V QV YF CGG+++GV H AD + +F+ +W ARG
Sbjct: 120 IPAVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMARG 176
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 266 IAVNLRKRMNPPLPEESFGNICSAAFLNLPIDRDHDHE-KKINHGSLAGQLHQSIRMVDD 324
IA + R R+ P LP FGN+ F PI D E K + + A ++H ++ +D+
Sbjct: 284 IATDGRARLRPSLPPGYFGNVI---FTATPIAIAGDLEFKPVWYA--ASKIHDALARMDN 338
Query: 325 QFVRKLYVEGEILNIRKAVEAQGSPKSNKVFVISSWCKMPFYEADFGWGKPVSIGVG 381
++R E+ KA+ I+SW ++P ++ADFGWG+P+ +G G
Sbjct: 339 DYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADFGWGRPIFMGPG 395
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 13/177 (7%)
Query: 1 MELRFSSIENIKPSSPTPDHQRTHKLSFIDQLNPGAYFSIILFYSAGASS-----ERLKK 55
M++ ++P+ TP R S +D + P + + FY SS + LK
Sbjct: 6 MKIEVKESTMVRPAQETPG--RNLWNSNVDLVVPNFHTPSVYFYRPTGSSNFFDAKVLKD 63
Query: 56 SLSETLTHFYPFAGQFKDNH----FVDCDDHGVTFIEAHFDRGDMSEVIQQAKTNILEQL 111
+LS L FYP AG+ K + ++C+ GV F+EA D G + + A T L +L
Sbjct: 64 ALSRALVPFYPMAGRLKRDEDGRIEIECNGEGVLFVEAESD-GVVDDFGDFAPTLELRRL 122
Query: 112 IPCKPHESTRVEHNLIV-QVNYFGCGGMAIGVCFHHKVADAATAANFLKTWGLHARG 167
IP + + L+V QV YF GG+++GV H AD + +F+ +W ARG
Sbjct: 123 IPAVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMARG 179
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 266 IAVNLRKRMNPPLPEESFGNICSAAFLNLPIDRDHDHE-KKINHGSLAGQLHQSIRMVDD 324
IA + R R+ P LP FGN+ F PI D E K + + A ++H ++ +D+
Sbjct: 287 IATDGRARLRPSLPPGYFGNVI---FTATPIAIAGDLEFKPVWYA--ASKIHDALARMDN 341
Query: 325 QFVRKLYVEGEILNIRKAVEAQGSPKSNKVFVISSWCKMPFYEADFGWGKPVSIGVGTRF 384
++R E+ KA+ I+SW ++P ++ADFGWG+P+ +G G
Sbjct: 342 DYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADFGWGRPIFMGPGGIA 401
Query: 385 TEAAVLVDGCQTDGIEAWVGLSKQ 408
E + T+ V +S Q
Sbjct: 402 YEGLSFILPSPTNDGSMSVAISLQ 425
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 131/378 (34%), Gaps = 92/378 (24%)
Query: 53 LKKSLSETLTHFYPFAGQFKDNHFVDCDDHGVTFIEAHFDRGDMSEVIQQAKTNILEQLI 112
LK SLS TL ++ P AG V C + E + G+ VI LI
Sbjct: 60 LKDSLSLTLKYYLPLAGN------VACPQDWSGYPELRYVTGNSVSVIFSESDXDFNYLI 113
Query: 113 PCKPHESTRVEH------------------NLIVQVNYFGCGGMAIGVCFHHKVADAATA 154
P + H L +QV F G++IG HH D AT
Sbjct: 114 GYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATI 173
Query: 155 ANFLKTWGLHAR-------------------------GAGAGDTND---FKHAIYDSNSI 186
F++ W L + G G N+ +KH S+ +
Sbjct: 174 VKFVRAWALLNKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXXKXSDVV 233
Query: 187 FPAQDLPDMSVNLGLGIVLVRFCASLREKIVQAEPGLGRPSRVEVVSSVILGALLAAYRG 246
P PD G I+ L+ ++ P L + V + + ++ +
Sbjct: 234 TP----PDKV--RGTFIITRHDIGKLKNLVLTRRPKLTHVTSFTVTCAYVWTCIIKSEAA 287
Query: 247 S-----RDGDEEFTTAPLTHVTAIIAVNLRKRMNPPLPEESFGNICSAAFLNLPIDRDHD 301
+ +G E F A + R + NPPLP FGN A + R D
Sbjct: 288 TGEEIDENGXEFFGC----------AADCRAQFNPPLPPSYFGN---ALVGYVARTRQVD 334
Query: 302 HEKKINHGSLAGQLHQSI--RMVDDQFVR--KLYVEGEILNIRKAVEAQGSPKSNKVFVI 357
K + ++I R D++++ + E + ++ ++++ GSP
Sbjct: 335 LAGKEGFTIAVELIGEAIRKRXKDEEWILSGSWFKEYDKVDAKRSLSVAGSP-------- 386
Query: 358 SSWCKMPFYEADFGWGKP 375
K+ Y ADFGWG+P
Sbjct: 387 ----KLDLYAADFGWGRP 400
>pdb|1XNG|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNG|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Helicobacter Pylori
pdb|1XNH|A Chain A, Crystal Structure Of Nh3-dependent Nad+ Synthetase From
Helicobacter Pylori
Length = 268
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 21/106 (19%)
Query: 284 GNICS---AAFL--------NLPIDRDHDHEKKINHGSLAGQLHQSIRMVDDQFVRKLYV 332
GN C+ AFL +L I + E+ + +G+L G L +I + + F ++Y
Sbjct: 107 GNFCARLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEVYE 166
Query: 333 EGEILNIRKAVEAQGSPKSNKVFVISSWCKMPFYEADFGWGKPVSI 378
LNI K + P S +FV S E D G+ P S+
Sbjct: 167 LARRLNIPKKI--LNKPPSADLFVGQSD------EKDLGY--PYSV 202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,018,804
Number of Sequences: 62578
Number of extensions: 536860
Number of successful extensions: 1030
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 14
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)