BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040755
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 118/206 (57%), Gaps = 19/206 (9%)
Query: 40 QLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISG 97
+ +K AE GT++L+F GCGS + + + + F G+ + WGL V+ M ++VGHISG
Sbjct: 3 HMFRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISG 62
Query: 98 AHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF--- 148
HFNPAVTI FP K+V Y++AQ++G ++A+ LYLI FD F
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 149 -FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAG 205
+G G + + + V+E+++S + VI G ATD + A IAIG+ + L L++
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISI 181
Query: 206 PVSGASMNPARSLGPAIVMHQYKGLW 231
PV+ S+NPARS AI ++G W
Sbjct: 182 PVTNTSVNPARSTAVAI----FQGGW 203
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 17/210 (8%)
Query: 40 QLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISG 97
+ +K AE GT++L+F GCGS + + + F G+ + WGL V+ M ++VGHISG
Sbjct: 3 HMFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAWGLTVLTMAFAVGHISG 62
Query: 98 AHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF--- 148
HFNPAVTI FP K+V Y++AQ++G ++A+ LYLI FD F
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 149 -FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAG 205
+G G + + + V+E+++S + VI G ATD + A IAIG+ + L L++
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLISI 181
Query: 206 PVSGASMNPARSLGPAIVMHQY--KGLWVY 233
PV+ S+NPARS AI + + LW +
Sbjct: 182 PVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 125/249 (50%), Gaps = 41/249 (16%)
Query: 38 VLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS------------------VTFPGICV 79
++ L ++ IAE IGT+ L+F G GS AV + S + I +
Sbjct: 1 MVSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGL 60
Query: 80 VWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYL 139
+G + IY++G+ISG H NPAVTI + FP ++V YI+AQLLG+ S
Sbjct: 61 AFGFAIAASIYALGNISGCHINPAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGS----- 115
Query: 140 IFDVKDEAFFGTIPVG-----------TNVQSFVLEIIISFLLMFVISGVATDNRSIGEL 188
F A G VG + Q+ + E++ +FLLM I G+A D R+
Sbjct: 116 -FIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMGIAVDERAPKGF 174
Query: 189 AGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKG--LW----VYIAGPIIGTI 242
AGI IG+T+ + G +SG+S+NPAR+ GP + + G LW +Y+ GPI+G +
Sbjct: 175 AGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAV 234
Query: 243 LGGLAYNMI 251
L L Y +
Sbjct: 235 LAALTYQYL 243
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 14/122 (11%)
Query: 23 KCSKISDAR-----NSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGI 77
+C+ I A ++P P + Q +AEV+GT+ L+ T G +AV++ F GI
Sbjct: 120 QCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIMG-IAVDE-RAPKGFAGI 177
Query: 78 CVVWGLIVMVMIYSVGHISGAHFNPAVT----ITFAIFRHFP-RKQVPIYIVAQLLGSVL 132
+ GL V +I ++G+ISG+ NPA T + IF IY++ ++G+VL
Sbjct: 178 II--GLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVL 235
Query: 133 AS 134
A+
Sbjct: 236 AA 237
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 103/193 (53%), Gaps = 6/193 (3%)
Query: 77 ICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGS 136
I + +GL + M+ GHISG H NPAVT+ R + YI AQ LG+++ +G
Sbjct: 90 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 149
Query: 137 LYLIFDVKDEAFFGTIPVGTNV---QSFVLEIIISFLLMFVISGVATDNRS--IGELAGI 191
LYL+ G V N+ ++E+II+F L+F I D R+ G +A +
Sbjct: 150 LYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-L 208
Query: 192 AIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMI 251
AIG ++ + L A +GASMNPARS GPA++M ++ W+Y GPIIG +L G Y +
Sbjct: 209 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 268
Query: 252 RFTDKPLREITKS 264
D L+ K
Sbjct: 269 FCPDVELKRRLKE 281
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 103/193 (53%), Gaps = 6/193 (3%)
Query: 77 ICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGS 136
I + +GL + M+ GHISG H NPAVT+ R + YI AQ LG+++ +G
Sbjct: 51 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 110
Query: 137 LYLIFDVKDEAFFGTIPVGTNV---QSFVLEIIISFLLMFVISGVATDNRS--IGELAGI 191
LYL+ G V N+ ++E+II+F L+F I D R+ G +A +
Sbjct: 111 LYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA-L 169
Query: 192 AIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMI 251
AIG ++ + L A +GASMNPARS GPA++M ++ W+Y GPIIG +L G Y +
Sbjct: 170 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
Query: 252 RFTDKPLREITKS 264
D L+ K
Sbjct: 230 FCPDVELKRRLKE 242
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 102/193 (52%), Gaps = 6/193 (3%)
Query: 77 ICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGS 136
I + +GL + M+ GHISG H NPAVT+ R + YI AQ LG+++ +G
Sbjct: 51 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGI 110
Query: 137 LYLIFDVKDEAFFGTIPVGTNV---QSFVLEIIISFLLMFVISGVATDNRS--IGELAGI 191
LYL+ G V N+ ++E+II+F L+F I R+ G +A +
Sbjct: 111 LYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSVA-L 169
Query: 192 AIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMI 251
AIG ++ + L A +GASMNPARS GPA++M ++ W+Y GPIIG +L G Y +
Sbjct: 170 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYV 229
Query: 252 RFTDKPLREITKS 264
D L+ K
Sbjct: 230 FCPDVELKRRLKE 242
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 77/209 (36%), Positives = 118/209 (56%), Gaps = 17/209 (8%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISGA 98
+ +K AE GT++L+F GCGS + + + F G+ + +GL V+ M ++VGHISG
Sbjct: 1 MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 60
Query: 99 HFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF---- 148
HFNPAVTI FP K+V Y++AQ++G ++A+ LYLI FD F
Sbjct: 61 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNG 120
Query: 149 FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGP 206
+G G + + + V+E+++S + VI G ATD + A IAIG+ + L L++ P
Sbjct: 121 YGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIP 179
Query: 207 VSGASMNPARSLGPAIVMHQY--KGLWVY 233
V+ S+NPARS AI + + LW +
Sbjct: 180 VTNTSVNPARSTAVAIFQGGWALEQLWFF 208
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 115 bits (287), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 118/210 (56%), Gaps = 17/210 (8%)
Query: 40 QLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISG 97
+ +K AE GT++L+F GCGS + + + F G+ + +GL V+ M ++VGHISG
Sbjct: 3 HMFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 98 AHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF--- 148
HFNPAVTI FP K+V Y++AQ++G ++A+ LYLI FD F
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 149 -FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAG 205
+G G + + + V+E+++S + VI G ATD + A IAIG+ + L L++
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIGLISI 181
Query: 206 PVSGASMNPARSLGPAIVMHQY--KGLWVY 233
PV+ S+NPARS AI + + LW +
Sbjct: 182 PVTNFSVNPARSTAVAIFQGGWALEQLWFF 211
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 125/234 (53%), Gaps = 12/234 (5%)
Query: 47 AEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTI 106
AE T F +F G G+ ++ G + + + +GL + ++ +VGHISGAH NPAVT
Sbjct: 15 AEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTF 73
Query: 107 TFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIF--DVKDEAFFGTIPVGTNV-QSFVL 163
F + + Y+VAQLLG+V + LY + V+ T+ G +V Q+ ++
Sbjct: 74 AFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIV 133
Query: 164 EIIISFLLMFVISGVAT-DNRSIGELAGIA--IGMTILLNVLVAGPVSGASMNPARSLGP 220
EI ++ L FV+ AT D R G L +A +G ++ L L +GA MNPARS P
Sbjct: 134 EIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 191
Query: 221 AIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKSFSRP 274
AI+ + WVY GP+IG LG L Y+ + F L+ +++ S LK +RP
Sbjct: 192 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILKG-TRP 242
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 114 bits (285), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 83/234 (35%), Positives = 125/234 (53%), Gaps = 12/234 (5%)
Query: 47 AEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTI 106
AE + F +F G G+ ++ G + + + +GL + ++ +VGHISGAH NPAVT
Sbjct: 15 AEFFASLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTF 73
Query: 107 TFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIF--DVKDEAFFGTIPVGTNV-QSFVL 163
F + + Y+VAQLLG+V + LY + V+ T+ G +V Q+ ++
Sbjct: 74 AFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIV 133
Query: 164 EIIISFLLMFVISGVAT-DNRSIGELAGIA--IGMTILLNVLVAGPVSGASMNPARSLGP 220
EI ++ L FV+ AT D R G L +A +G ++ L L +GA MNPARS P
Sbjct: 134 EIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 191
Query: 221 AIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKSFSRP 274
AI+ + WVY GP+IG LG L Y+ + F L+ +++ S LK SRP
Sbjct: 192 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILKG-SRP 242
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 11/229 (4%)
Query: 47 AEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTI 106
AE T F +F G G+ ++ G + + + +GL + ++ +VGHISGAH NPAVT
Sbjct: 11 AEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTF 69
Query: 107 TFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIF--DVKDEAFFGTIPVGTNV-QSFVL 163
F + + Y+VAQLLG+V + LY + V+ T+ G +V Q+ ++
Sbjct: 70 AFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIV 129
Query: 164 EIIISFLLMFVISGVAT-DNRSIGELAGIA--IGMTILLNVLVAGPVSGASMNPARSLGP 220
EI ++ L FV+ AT D R G L +A +G ++ L L +GA MNPARS P
Sbjct: 130 EIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAP 187
Query: 221 AIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLK 269
AI+ + WVY GP+IG LG L Y+ + F L+ +++ S LK
Sbjct: 188 AILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILK 234
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 116/206 (56%), Gaps = 19/206 (9%)
Query: 40 QLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISG 97
+ +K AE GT++L+F G GS + + + F G+ + +GL V+ M ++VGHISG
Sbjct: 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 98 AHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF--- 148
HFNPAVTI FP K+V Y++AQ++G ++A+ LYLI FD F
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 149 -FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAG 205
+G G + + + V+E+++S + VI G ATD + A IAIG+ + L L++
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISI 181
Query: 206 PVSGASMNPARSLGPAIVMHQYKGLW 231
PV+ S+NPARS AI ++G W
Sbjct: 182 PVTNCSVNPARSTAVAI----FQGGW 203
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 110 bits (276), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 76/205 (37%), Positives = 116/205 (56%), Gaps = 19/205 (9%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISGA 98
+ +K AE GT++L+F G GS + + + F G+ + +GL V+ M ++VGHISG
Sbjct: 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGG 63
Query: 99 HFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF---- 148
HFNPAVTI FP K+V Y++AQ++G ++A+ LYLI FD F
Sbjct: 64 HFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNG 123
Query: 149 FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGP 206
+G G + + + V+E+++S + VI G ATD + A IAIG+ + L L++ P
Sbjct: 124 YGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISIP 182
Query: 207 VSGASMNPARSLGPAIVMHQYKGLW 231
V+ S+NPARS AI ++G W
Sbjct: 183 VTNCSVNPARSTAVAI----FQGGW 203
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Query: 40 QLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISG 97
+ +K AE GT++L+F G GS + + + F G+ + +GL V+ M ++VGHISG
Sbjct: 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62
Query: 98 AHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF--- 148
HFNPAVTI FP K+V Y++AQ++G ++A+ LYLI FD F
Sbjct: 63 GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 149 -FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAG 205
+G G + + + V+E+++S + VI G ATD + A IAIG+ L L++
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTLIHLISI 181
Query: 206 PVSGASMNPARSLGPAIVMHQYKGLW 231
PV+ S+NPARS AI ++G W
Sbjct: 182 PVTNTSVNPARSTAVAI----FQGGW 203
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 114/214 (53%), Gaps = 9/214 (4%)
Query: 46 IAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVT 105
AE T F +F G G+ ++ G + + + +GL + ++ +VGHISGAH NPAVT
Sbjct: 8 FAEFFATLFYVFFGLGA-SLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVT 66
Query: 106 ITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIF--DVKDEAFFGTIPVGTNV-QSFV 162
F + + Y+VAQLLG+V + LY + V+ T+ G +V Q+ +
Sbjct: 67 FAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATI 126
Query: 163 LEIIISFLLMFVISGVAT-DNRSIGELA--GIAIGMTILLNVLVAGPVSGASMNPARSLG 219
+EI ++ L FV+ AT D R G L +A+G ++ L L +GA MNPARS
Sbjct: 127 VEIFLT--LQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFA 184
Query: 220 PAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRF 253
PAI+ + WVY GP+IG LG L Y+ + F
Sbjct: 185 PAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLF 218
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 98/180 (54%), Gaps = 6/180 (3%)
Query: 77 ICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGS 136
I + +GL + M+ GHISG H NPAVT+ R + YI AQ LG+++ +G
Sbjct: 42 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGI 101
Query: 137 LYLIFDVKDEAFFGTIPVGTNV---QSFVLEIIISFLLMFVISGVATDNRS--IGELAGI 191
LYL+ G V N+ ++E+II+F L+F I R+ G +A +
Sbjct: 102 LYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIA-L 160
Query: 192 AIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMI 251
AIG ++ + L A +GASMNPARS GPA++M ++ W+Y GPIIG +L G Y +
Sbjct: 161 AIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYV 220
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 124/246 (50%), Gaps = 38/246 (15%)
Query: 39 LQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS------------------VTFPGICVV 80
+ L ++ AEV+GT+ L+F G G+ + + + + I +
Sbjct: 3 MTLAKRFTAEVVGTFILVFFGPGAAVITLMIANGADKPNEFNIGIGALGGLGDWFAIGMA 62
Query: 81 WGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI 140
+ L + +IYS+G ISGAH NPAVTI FP ++V YIVAQ +G+ L GSL +
Sbjct: 63 FALAIAAVIYSLGRISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAAL--GSLLFL 120
Query: 141 FDVKDEA-----FFGTIP---VGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIA 192
V A T P +G Q+ + E I +FLLM VI GVA D R+ AG+
Sbjct: 121 ACVGPAAATVGGLGATAPFPGIGYG-QAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLV 179
Query: 193 IGMTILLNVLVAGPVSGASMNPARSLGP-------AIVMHQYKGLWVYIAGPIIGTILGG 245
IG+T+ + G ++G+S+NPAR+ GP I + QY +Y+ GPI+G +
Sbjct: 180 IGLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQY--FPIYVIGPIVGAVAAA 237
Query: 246 LAYNMI 251
YN +
Sbjct: 238 WLYNYL 243
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 64/128 (50%), Gaps = 21/128 (16%)
Query: 16 CTTPASTKCSKISDARNSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFP 75
C PA+ + ++P P + Q + E IGT+ L+ G VAV++ F
Sbjct: 122 CVGPAAATVGGLGA---TAPFPGIGYGQAILTEAIGTFLLMLVIMG-VAVDE-RAPPGFA 176
Query: 76 GICVVWGLIVMVMIYSVGHISGAHFNPAVT---------ITFAIFRHFPRKQVPIYIVAQ 126
G+ + GL V +I ++G+I+G+ NPA T + ++++F PIY++
Sbjct: 177 GLVI--GLTVGGIITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYF-----PIYVIGP 229
Query: 127 LLGSVLAS 134
++G+V A+
Sbjct: 230 IVGAVAAA 237
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) With Substrate Glycerol
pdb|1LDA|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(glpf) Without Substrate Glycerol
pdb|1LDI|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Without Substrate Glycerol
Length = 281
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 123/250 (49%), Gaps = 41/250 (16%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYG-SVTFPGICVVWGLIVMVMIYSVGHISGAH 99
L + IAE +GT LIF G G VA K+ G S I V+WGL V + IY +SGAH
Sbjct: 7 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIWGLGVAMAIYLTAGVSGAH 66
Query: 100 FNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLY-----LIFD-----------V 143
NPAVTI +F F +++V +IV+Q+ G+ A+ +Y L FD V
Sbjct: 67 LNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSV 126
Query: 144 KDEAFFGTIPVGTN-----VQSFVLEIIISFLLMFVISGVATDNRSI--GELAGIAIGMT 196
+ GT N VQ+F +E++I+ +LM +I + D + G LA + IG+
Sbjct: 127 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLL 186
Query: 197 ILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIA---------------GPIIGT 241
I + GP++G +MNPAR GP + + W +A GPI+G
Sbjct: 187 IAVIGASMGPLTGFAMNPARDFGPKV--FAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGA 244
Query: 242 ILGGLAYNMI 251
I+G AY +
Sbjct: 245 IVGAFAYRKL 254
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 15/227 (6%)
Query: 43 QKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISGAHF 100
+K +AE GT++L+F GCGS + + F G+ + +GL V+ M Y+VG ISG HF
Sbjct: 31 RKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHF 90
Query: 101 NPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVK---DEAFFGTIPVGTN 157
NPAV++ + FP + Y++AQ+ G+++A+ +LY+I K D F + G +
Sbjct: 91 NPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEH 150
Query: 158 -------VQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGA 210
V + ++EII++ + VI G +T R A IAIG+ + L L++ PV+
Sbjct: 151 SPGGYSLVSALLIEIILTAFFLIVILG-STHGRVPAGFAPIAIGLALTLIHLISIPVTNT 209
Query: 211 SMNPARSLGPAIVMHQY--KGLWVYIAGPIIGTILGGLAYNMIRFTD 255
S+NPARS G A+ + + + LW++ PI+G G + + + D
Sbjct: 210 SVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFGEKD 256
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator
(Glpf) Mutation W48f, F200t
Length = 281
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 123/250 (49%), Gaps = 41/250 (16%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYG-SVTFPGICVVWGLIVMVMIYSVGHISGAH 99
L + IAE +GT LIF G G VA K+ G S I V++GL V + IY +SGAH
Sbjct: 7 LKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAH 66
Query: 100 FNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLY-----LIFD-----------V 143
NPAVTI +F F +++V +IV+Q+ G+ A+ +Y L FD V
Sbjct: 67 LNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSV 126
Query: 144 KDEAFFGTIPVGTN-----VQSFVLEIIISFLLMFVISGVATDNRSI--GELAGIAIGMT 196
+ GT N VQ+F +E++I+ +LM +I + D + G LA + IG+
Sbjct: 127 ESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRGPLAPLLIGLL 186
Query: 197 ILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIA---------------GPIIGT 241
I + GP++G +MNPAR GP + + W +A GPI+G
Sbjct: 187 IAVIGASMGPLTGTAMNPARDFGPKV--FAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGA 244
Query: 242 ILGGLAYNMI 251
I+G AY +
Sbjct: 245 IVGAFAYRKL 254
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 8/221 (3%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHF 100
L+ AE + T +F G GS A+ T I + +GL + + ++G +SG H
Sbjct: 11 FLKAVFAEFLATLIFVFFGLGS-ALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHI 69
Query: 101 NPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVG---TN 157
NPA+T+ + + Y+ AQL+G++ +G LY + + + T
Sbjct: 70 NPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQ 129
Query: 158 VQSFVLEIIISFLLMFVISGVATDNRSIGELA--GIAIGMTILLNVLVAGPVSGASMNPA 215
Q+ V+E+I++F L I +TD+R + ++IG+++ L LV +G SMNPA
Sbjct: 130 GQAMVVELILTFQLALCIFA-STDSRRTSPVGSPALSIGLSVTLGHLVGIYFTGCSMNPA 188
Query: 216 RSLGPAIVMHQYK-GLWVYIAGPIIGTILGGLAYNMIRFTD 255
RS GPA+VM+++ WV+ GPI+G +L + Y + F +
Sbjct: 189 RSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPN 229
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 43 QKAIAEVIGTYFLIFTGCGS-------VAVNKIYGSVTFP-GICVVWGLIVMVMIYSVGH 94
+ +AE + IF GS + N+ G+V + + +GL + + SVGH
Sbjct: 12 RAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGH 71
Query: 95 ISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPV 154
ISGAH NPAVT+ + + +YI+AQ +G+++A+ L I + G +
Sbjct: 72 ISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNAL 131
Query: 155 GTNV---QSFVLEIIISFLLMFVISGVATDNRSIGELAG---IAIGMTILLNVLVAGPVS 208
V Q +EII + L+ + +AT +R +L G +AIG ++ L L+A +
Sbjct: 132 APGVNSGQGLGIEIIGTLQLVLCV--LATTDRRRRDLGGSGPLAIGFSVALGHLLAIDYT 189
Query: 209 GASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMI 251
G +NPARS G +++ H ++ W++ GP IG L L Y+ I
Sbjct: 190 GCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFI 232
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 95/179 (53%), Gaps = 4/179 (2%)
Query: 77 ICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGS 136
+ + +GL + + SVGHISGAH NPAVT+ + + +YI+AQ +G+++A+
Sbjct: 52 VSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAI 111
Query: 137 LYLIFDVKDEAFFGTIPVGTNV---QSFVLEIIISF-LLMFVISGVATDNRSIGELAGIA 192
L I G + V Q +EII + L++ V++ R +G A +A
Sbjct: 112 LSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLA 171
Query: 193 IGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMI 251
IG+++ L L+A +G +NPARS G A++ H + W++ GP IG L L Y+ I
Sbjct: 172 IGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFI 230
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 28 SDARNSSPSPVLQL--------LQKAIAEVIGT----YFLIFTGCGSVAVNKIYGSVTFP 75
D + P+P L + AIAE I T Y + T G + GSV
Sbjct: 16 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLL 75
Query: 76 GICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASG 135
GI +G ++ V++Y ISG H NPAVT + R + +Y++AQ LG++ G
Sbjct: 76 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVG 135
Query: 136 SLYLIFDVKDEAFFG---TIPVGTNVQSFV-LEIIISFLLMFVISGVATDNRSIGE---- 187
+ F G ++ +G N + + EII +F+L++ + RS +
Sbjct: 136 LVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 195
Query: 188 -LAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQ---YKGLWVYIAGPIIGT 241
LA + IG + + L P++G +NPARS G A++ + + W++ GP IG
Sbjct: 196 ILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA 253
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 28 SDARNSSPSPVLQL--------LQKAIAEVIGT----YFLIFTGCGSVAVNKIYGSVTFP 75
D + P+P L + AIAE I T Y + T G + GSV
Sbjct: 39 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLL 98
Query: 76 GICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASG 135
GI +G ++ V++Y ISG H NPAVT + R + +Y++AQ LG++ G
Sbjct: 99 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVG 158
Query: 136 SLYLIFDVKDEAFFG---TIPVGTNVQSFV-LEIIISFLLMFVISGVATDNRSIGE---- 187
+ F G ++ +G N + + EII +F+L++ + RS +
Sbjct: 159 LVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 218
Query: 188 -LAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQ---YKGLWVYIAGPIIGT 241
LA + IG + + L P++G +NPARS G A++ + + W++ GP IG
Sbjct: 219 ILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA 276
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 28 SDARNSSPSPVLQL--------LQKAIAEVIGT----YFLIFTGCGSVAVNKIYGSVTFP 75
D + P+P L + AIAE I T Y + T G + GSV
Sbjct: 35 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLL 94
Query: 76 GICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASG 135
GI +G ++ V++Y ISG H NPAVT + R + +Y++AQ LG++ G
Sbjct: 95 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVG 154
Query: 136 SLYLIFDVKDEAFFG---TIPVGTNVQSFV-LEIIISFLLMFVISGVATDNRSIGE---- 187
+ F G ++ +G N + + EII +F+L++ + RS +
Sbjct: 155 LVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 214
Query: 188 -LAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQ---YKGLWVYIAGPIIGT 241
LA + IG + + L P++G +NPARS G A++ + + W++ GP IG
Sbjct: 215 ILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA 272
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 28 SDARNSSPSPVLQL--------LQKAIAEVIGT----YFLIFTGCGSVAVNKIYGSVTFP 75
D + P+P L + AIAE I T Y + T G + GSV
Sbjct: 39 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLL 98
Query: 76 GICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASG 135
GI +G ++ V++Y ISG H NPAVT + R + +Y++AQ LG++ G
Sbjct: 99 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVG 158
Query: 136 SLYLIFDVKDEAFFG---TIPVGTNVQSFV-LEIIISFLLMFVISGVATDNRSIGE---- 187
+ F G ++ +G N + + EII +F+L++ + RS +
Sbjct: 159 LVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 218
Query: 188 -LAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQ---YKGLWVYIAGPIIGT 241
LA + IG + + L P++G +NPARS G A++ + + W++ GP IG
Sbjct: 219 ILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA 276
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 108/238 (45%), Gaps = 24/238 (10%)
Query: 28 SDARNSSPSPVLQL--------LQKAIAEVIGT----YFLIFTGCGSVAVNKIYGSVTFP 75
D + P+P L + AIAE I T Y + T G + GSV
Sbjct: 16 KDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLL 75
Query: 76 GICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASG 135
GI +G ++ V++Y ISG H NPAVT + R + +Y++AQ LG++ G
Sbjct: 76 GIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVG 135
Query: 136 SLYLIFDVKDEAFFG---TIPVGTNVQSFV-LEIIISFLLMFVISGVATDNRSIGE---- 187
+ F G ++ +G N + + EII +F+L++ + RS +
Sbjct: 136 LVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVP 195
Query: 188 -LAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQ---YKGLWVYIAGPIIGT 241
LA + IG + + L P++G +NPARS G A++ + + W++ GP IG
Sbjct: 196 ILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGA 253
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium
Falciparum
Length = 258
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 119/249 (47%), Gaps = 33/249 (13%)
Query: 42 LQKAIAEVIGTYFLIFTGCGSVAVNKIYG-SVTFPGICVVWGLIVMVMIYSVGHISGAHF 100
+++ I E +GT+ L+F G G+ A G S + +C+ WGL V I +SGAH
Sbjct: 10 VREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHL 69
Query: 101 NPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLY-----LIFDVKDEAFFGTIPVG 155
N AV+I + F K++P+Y AQLLG+ + + ++Y I + K F
Sbjct: 70 NLAVSIGLSSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRN 129
Query: 156 TNVQ---SFVLEIIISFLLMFVISGVATDN----RSIGELAGIAIGMTILLNVLVAGPVS 208
++ +F E+I++ +L+ VI V +N I +L+ + +G+ IL + G +
Sbjct: 130 PSISLTGAFFNELILTGILLLVILVVVDENICGKFHILKLSSV-VGLIILCIGITFGGNT 188
Query: 209 GASMNPARSLGPAIVMHQYKG----------LWVYIAGPIIGTILGGLAYNMIRFTDK-- 256
G ++NP+R LG + G WV + P +G+++ +F DK
Sbjct: 189 GFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVV------FCQFYDKVI 242
Query: 257 -PLREITKS 264
PL ++ +
Sbjct: 243 CPLVDLANN 251
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 3/176 (1%)
Query: 82 GLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIF 141
G VMV ++ +SG + NPAVT+ + R P + + Q++ + A+
Sbjct: 93 GFGVMVGVFITYRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAA-GAASAM 151
Query: 142 DVKDEAFFGTIPVG-TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLN 200
+ AF + G + + LE + +L + +A + A IG+ +L+
Sbjct: 152 TPGEIAFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPFVIGIALLIA 211
Query: 201 VLVAGPVSGASMNPARSLGPAIVMHQYKGL-WVYIAGPIIGTILGGLAYNMIRFTD 255
L+ +GA +NPARS GPA+ + W+Y GPI+G L + M ++ +
Sbjct: 212 HLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLN 267
>pdb|1KXR|A Chain A, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
pdb|1KXR|B Chain B, Crystal Structure Of Calcium-Bound Protease Core Of
Calpain I
Length = 339
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVT 73
LL+KA A+V G+Y + GC S A G VT
Sbjct: 165 LLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVT 197
>pdb|1TL9|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With Leupeptin
pdb|1TLO|A Chain A, High Resolution Crystal Structure Of Calpain I Protease
Core In Complex With E64
pdb|2G8E|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1715, A
Cyclic Hemiacetal-Type Inhibitor
pdb|2G8J|A Chain A, Calpain 1 Proteolytic Core In Complex With Snj-1945, A
Alpha-Ketoamide-Type Inhibitor.
pdb|2NQG|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr18(s,s), An
Epoxysuccinyl-type Inhibitor.
pdb|2NQI|A Chain A, Calpain 1 Proteolytic Core Inactivated By Wr13(R,R), An
Epoxysuccinyl-Type Inhibitor.
pdb|2R9C|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3001, An
Alpha- Ketoamide
pdb|2R9F|A Chain A, Calpain 1 Proteolytic Core Inactivated By Zlak-3002, An
Alpha- Ketoamide
Length = 339
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVT 73
LL+KA A+V G+Y + GC S A G VT
Sbjct: 165 LLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVT 197
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 28.1 bits (61), Expect = 4.9, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 41 LLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVT 73
LL+KA A+V G+Y + GC S A G VT
Sbjct: 180 LLEKAYAKVNGSYEALSGGCTSEAFEDFTGGVT 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,721,032
Number of Sequences: 62578
Number of extensions: 296416
Number of successful extensions: 827
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 79
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)