BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040757
         (295 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4H7W|A Chain A, Crystal Structure Of Human C16orf57
          Length = 193

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 5/147 (3%)

Query: 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITG 204
           FH+SL ++V +R H I   V  L+ R+ S  R++   ++ + + N ++TRTF+ LEV +G
Sbjct: 47  FHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSG 106

Query: 205 --GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSV 262
               L++  ++  V E +   NL  FY+DP  H+SLAW +GD    L+   ++E++ +  
Sbjct: 107 HAQFLDLVSEVDRVMEEF---NLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVD 163

Query: 263 ESSLHKHFFSCKFGGIHCKIGKKTYKI 289
                +         + CK G K + +
Sbjct: 164 GFEDAEVLLRVHTEQVRCKSGNKFFSM 190


>pdb|1TZB|A Chain A, Crystal Structure Of Native Phosphoglucose/phosphomannose
           Isomerase From Pyrobaculum Aerophilum
 pdb|1TZB|B Chain B, Crystal Structure Of Native Phosphoglucose/phosphomannose
           Isomerase From Pyrobaculum Aerophilum
 pdb|1TZC|A Chain A, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           5-Phosphoarabinonate
 pdb|1TZC|B Chain B, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           5-Phosphoarabinonate
 pdb|1X9H|A Chain A, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           Fructose 6-Phosphate
 pdb|1X9H|B Chain B, Crystal Structure Of PhosphoglucosePHOSPHOMANNOSE
           ISOMERASE FROM Pyrobaculum Aerophilum In Complex With
           Fructose 6-Phosphate
 pdb|1X9I|A Chain A, Crystal Structure Of Crystal Structure Of
           PhosphoglucosePHOSPHOMANNOSE
           PHOSPHOGLUCOSEPHOSPHOMANNOSEISOMERASE From Pyrobaculum
           Aerophilum In Complex With Glucose 6-Phosphate
 pdb|1X9I|B Chain B, Crystal Structure Of Crystal Structure Of
           PhosphoglucosePHOSPHOMANNOSE
           PHOSPHOGLUCOSEPHOSPHOMANNOSEISOMERASE From Pyrobaculum
           Aerophilum In Complex With Glucose 6-Phosphate
          Length = 302

 Score = 28.5 bits (62), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 90  LPTVLIP--LAPKKELAQFLKRVSSILPGIYVVDVDVP 125
           +PTV++P   AP+  L Q L     ++  +Y +DV +P
Sbjct: 123 VPTVIVPKASAPRAALPQLLTAALHVVAKVYGIDVKIP 160


>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
           Prenylated Ypt1 Gtpase
 pdb|2BCG|G Chain G, Structure Of Doubly Prenylated Ypt1:gdi Complex
          Length = 453

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 94  LIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQV 139
           L P+    EL Q   R+S+I  G Y++D  +     +KD  + E V
Sbjct: 235 LYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV 280


>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi
 pdb|3CPH|H Chain H, Crystal Structure Of Sec4 In Complex With Rab-Gdi
 pdb|3CPI|G Chain G, Crystal Structure Of Yeast Rab-Gdi
 pdb|3CPI|H Chain H, Crystal Structure Of Yeast Rab-Gdi
 pdb|3CPJ|G Chain G, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
          Length = 451

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 94  LIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQV 139
           L P+    EL Q   R+S+I  G Y++D  +     +KD  + E V
Sbjct: 233 LYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGV 278


>pdb|3QNM|A Chain A, Haloalkane Dehalogenase Family Member From Bacteroides
           Thetaiotaomicron Of Unknown Function
          Length = 240

 Score = 28.1 bits (61), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 12/32 (37%), Positives = 18/32 (56%)

Query: 72  YAHQLFAVLPTKGSIDHHLPTVLIPLAPKKEL 103
           ++   FA++PTK  +  H   VL  LAP+  L
Sbjct: 94  FSEDFFAIIPTKSGLXPHAKEVLEYLAPQYNL 125


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.138    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,308,302
Number of Sequences: 62578
Number of extensions: 257302
Number of successful extensions: 596
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 7
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)