BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040757
(295 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DEF6|USB1_DANRE Putative U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2
SV=1
Length = 276
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 9/148 (6%)
Query: 144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
EFH+SL +TV +R H I V +R L ++++ K + + N ++TRTFL +EV T
Sbjct: 129 EFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVST 188
Query: 204 GG--LLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRL- 260
G LLE++K +V+E + NL FY+DP HISLAW +GD + LK+ + E++ L
Sbjct: 189 GTPHLLELSK---IVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKACLLELQGLI 245
Query: 261 -SVESSLHKHFFSCKFGGIHCKIGKKTY 287
+ E +C + CK G K +
Sbjct: 246 DAHEDGPFHARLNC--NELRCKTGNKVF 271
>sp|Q91W78|USB1_MOUSE Putative U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2
SV=1
Length = 267
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 38/293 (12%)
Query: 3 ALLASYGDSYSDSDTE-----RGNPSNSGINSSSSQP-ETTNLPLPPPPLSLVNPPNSLG 56
A L Y S S+ + E R P +G + P + LP+P LS+ P G
Sbjct: 4 APLVGYSSSGSEDEAEAVAAGRSKP-GTGFHRCGQNPVPSEKLPVPDSVLSMF-PSTEEG 61
Query: 57 KYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPG 116
+ S+ +G I + H+ +G+ H + IP K++ L ++LP
Sbjct: 62 PEDDSAKHGG-RIRTFPHE-------RGNWATH---IYIPYEAKEDFRDLL---DALLPR 107
Query: 117 IYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRR 176
+ VP ++ EFH+SL ++V +R H I V +L+ R+ S +R
Sbjct: 108 AQMF---VP------------RLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQR 152
Query: 177 YWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHI 236
++ ++ + + N ++TRTF+ LEV + G + + V+ + +L FY+DP HI
Sbjct: 153 FFFTANRVKIYTNQEKTRTFIGLEV-SSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHI 211
Query: 237 SLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKI 289
SLAW +GD S L+ ++E++ + E + + CK G K + +
Sbjct: 212 SLAWCVGDASLQLEGQCLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSM 264
>sp|Q5I0I5|USB1_RAT Putative U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1
PE=2 SV=1
Length = 267
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
EFH+SL ++V +R H I V +L+ R+ S +R++ ++ + + N ++TRTF+ LEV +
Sbjct: 120 EFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEV-S 178
Query: 204 GGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVE 263
G + + V+ V + +L FY+DP H+SLAW +GD L+ +E++ + E
Sbjct: 179 SGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQEIVDE 238
Query: 264 SSLHKHFFSCKFGGIHCKIGKKTYKI 289
+ + CK G K + +
Sbjct: 239 FEDSEMLLRVLAEQVRCKSGNKFFSM 264
>sp|Q7ZYI9|USB1_XENLA Putative U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2
SV=1
Length = 250
Score = 81.3 bits (199), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 29/202 (14%)
Query: 93 VLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRT 152
V IP P++E L + S+ + V T + EFHIS +T
Sbjct: 70 VYIPFQPQEEFLDLLDELVSV-----AAENGVLLTKMS-------------EFHISQSQT 111
Query: 153 VPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQ 212
V +R H I+ V L+ +L R+ + + + N ++TRTFL LEV G +
Sbjct: 112 VVLRHHWINPFVESLKDKLHCMYRFLCIAERIKVYTNQEKTRTFLGLEVSVG----MEHL 167
Query: 213 IQVVNEVYR---LHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRL--SVESSLH 267
++VV+EV R NL FY++P H+SLAW +GD LK + E++++ E S
Sbjct: 168 LEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWCVGDKYEKLKGSCLLELQKVIDRFEDSDT 227
Query: 268 KHFFSCKFGGIHCKIGKKTYKI 289
F+ + I CK G KT+ I
Sbjct: 228 LTRFNAE--EIRCKAGNKTFCI 247
>sp|Q0II50|USB1_BOVIN Putative U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1
Length = 265
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 38/292 (13%)
Query: 3 ALLASYGDSYSDSDTERG---NPSNSGINSSSSQPETTNLPLPPPPLSLVNPPNSLGKYN 59
A L Y S S+ + E G P G + S LP+P L + P G +
Sbjct: 4 APLVGYSSSGSEDEAEAGARVRPGAEGRSRGQSPLPGQRLPVPDSVLHMF-PSTEEGPVD 62
Query: 60 ISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYV 119
S+ +G + + H+ +G+ H V IP ++E L +
Sbjct: 63 DSAKHGG-RVRTFPHE-------RGNWATH---VYIPYEAREEFLDLLDAL--------- 102
Query: 120 VDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWI 179
L + + ++ FH+SL ++V +R H I V L+ R+ S R+
Sbjct: 103 ---------LCHAQTYVPRLVRMEAFHLSLSQSVVLRHHWILPFVQALKDRVASFHRFCF 153
Query: 180 DFSKWEAFVNDDRTRTFLSLEVITG--GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHIS 237
+ + + N ++TRTF+ LEV +G L++ ++ V E + +L FY+DP HIS
Sbjct: 154 TTDQVKIYTNQEKTRTFVGLEVTSGHAHFLDLVAEVDRVMEEF---DLSTFYQDPSFHIS 210
Query: 238 LAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKI 289
LAW +GD ++ ++E++ + E + I CK G K + +
Sbjct: 211 LAWCVGDARLQMEGPCLQELQGIVDEFEDSEMLLRAYAEQIRCKSGNKFFSM 262
>sp|Q9BQ65|USB1_HUMAN Putative U6 snRNA phosphodiesterase OS=Homo sapiens GN=USB1 PE=1
SV=1
Length = 265
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITG 204
FH+SL ++V +R H I V L+ R+ S R++ ++ + + N ++TRTF+ LEV +G
Sbjct: 119 FHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSG 178
Query: 205 --GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSV 262
L++ ++ V E + NL FY+DP H+SLAW +GD L+ ++E++ +
Sbjct: 179 HAQFLDLVSEVDRVMEEF---NLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVD 235
Query: 263 ESSLHKHFFSCKFGGIHCKIGKKTYKI 289
+ + CK G K + +
Sbjct: 236 GFEDAEVLLRVHTEQVRCKSGNKFFSM 262
>sp|Q54W16|USB1_DICDI Putative U6 snRNA phosphodiesterase OS=Dictyostelium discoideum
GN=DDB_G0279967 PE=3 SV=1
Length = 275
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSK-WEAFVNDDRTRTFLSLEVIT 203
FHIS+ RT PIR H I++ L++ L++QR I SK F+ND+++R FLS+ +
Sbjct: 121 FHISISRTFPIREHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQSRIFLSIPINQ 180
Query: 204 GGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLL 242
I K I+ ++ L P++Y +P PH+S++W L
Sbjct: 181 SFKSNILKLIERIDSCLSLFKFPKYYDNPEPHLSISWSL 219
>sp|Q9VHB3|USB1_DROME Putative U6 snRNA phosphodiesterase OS=Drosophila melanogaster
GN=CG16790 PE=2 SV=1
Length = 258
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 16/183 (8%)
Query: 116 GIYVVDVDVPFTSLRKDDSELEQVAFGR-----------EFHISLGRTVPIRVHQIDSIV 164
G + V VP T+ E + A R H+SL RTV ++ HQID
Sbjct: 76 GNWATYVYVPATACVDQLEEFQTEAIARLEPHLELQPNESLHLSLSRTVVLQYHQIDEFS 135
Query: 165 AMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHN 224
L+ L S + + N++RTRTF++ + + ++T +Q +++V +
Sbjct: 136 RSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAFVEKMTAILQPIDQVMLDYR 195
Query: 225 LPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGK 284
L +FY H+SL W +GD + L + E + L + L +H K G
Sbjct: 196 LQQFYDPASFHVSLLWCVGDQETLLNEKLTELKELLDDQDKL-----CLAVNEVHLKCGN 250
Query: 285 KTY 287
K +
Sbjct: 251 KDF 253
>sp|Q07969|CD36_RAT Platelet glycoprotein 4 OS=Rattus norvegicus GN=Cd36 PE=1 SV=3
Length = 472
Score = 32.0 bits (71), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 189 NDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHI-SLAWL-----L 242
N+D RT+L +E ITG L+ K++QV V + RP+I + WL +
Sbjct: 363 NEDEHRTYLDVEPITGFTLQFAKRLQVNILVKPARKIEALKNLKRPYIVPILWLNETGTI 422
Query: 243 GDVSSSLKR 251
GD + + R
Sbjct: 423 GDEKAEMFR 431
>sp|Q08857|CD36_MOUSE Platelet glycoprotein 4 OS=Mus musculus GN=Cd36 PE=1 SV=2
Length = 472
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 189 NDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHI-SLAWL-----L 242
N+D RT+L +E ITG L+ K++QV V + RP+I + WL +
Sbjct: 363 NEDEHRTYLDVEPITGFTLQFAKRLQVNILVKPARKIEALKNLKRPYIVPILWLNETGTI 422
Query: 243 GDVSSSL-KRVVVEEMKRLS-VESSL 266
GD + + K V ++K L VE +L
Sbjct: 423 GDEKAEMFKTQVTGKIKLLGMVEMAL 448
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,047,633
Number of Sequences: 539616
Number of extensions: 4648437
Number of successful extensions: 18737
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 18643
Number of HSP's gapped (non-prelim): 96
length of query: 295
length of database: 191,569,459
effective HSP length: 117
effective length of query: 178
effective length of database: 128,434,387
effective search space: 22861320886
effective search space used: 22861320886
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)