Query 040757
Match_columns 295
No_of_seqs 190 out of 249
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 18:38:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vgj_A Hypothetical protein PH 99.7 8.2E-17 2.8E-21 137.9 15.6 132 90-245 4-135 (184)
2 1iuh_A 2'-5' RNA ligase; riken 99.6 1.3E-15 4.3E-20 133.1 12.4 130 90-244 4-139 (198)
3 2vfk_A AKAP18 delta; APO, hydr 99.5 2.7E-14 9.4E-19 124.4 11.7 128 90-242 6-144 (205)
4 1jh6_A Cyclic phosphodiesteras 99.4 2.1E-11 7.1E-16 105.7 15.8 118 87-241 7-125 (189)
5 2d4g_A Hypothetical protein BS 99.3 8.6E-12 2.9E-16 105.4 11.5 119 90-242 4-122 (171)
6 2fsq_A ATU0111 protein; alpha- 96.1 0.15 5E-06 45.8 14.2 121 97-248 53-193 (243)
7 1jh6_A Cyclic phosphodiesteras 86.6 2.4 8.1E-05 35.6 8.0 75 190-280 5-79 (189)
8 1vgj_A Hypothetical protein PH 84.5 2.7 9.1E-05 34.5 7.2 77 194-280 2-80 (184)
9 2vfk_A AKAP18 delta; APO, hydr 81.0 11 0.00039 31.3 9.9 85 192-280 2-91 (205)
10 1iuh_A 2'-5' RNA ligase; riken 78.1 4 0.00014 34.3 6.1 76 194-280 2-79 (198)
11 2d4g_A Hypothetical protein BS 66.7 13 0.00046 29.8 6.5 72 194-280 2-74 (171)
12 3mlc_A FG41 malonate semialdeh 40.0 1.3E+02 0.0046 23.5 8.5 98 145-248 3-122 (136)
13 2aal_A Malonate semialdehyde d 35.1 1.5E+02 0.0051 22.6 8.8 81 206-287 14-122 (131)
14 3mlc_A FG41 malonate semialdeh 27.8 2.2E+02 0.0074 22.2 10.3 72 206-278 13-109 (136)
15 2xcz_A Possible ATLS1-like lig 24.7 2.1E+02 0.0073 21.1 8.2 52 209-260 16-84 (115)
16 1mww_A Hypothetical protein HI 24.2 2.3E+02 0.008 21.4 7.6 81 206-286 12-115 (128)
17 1hfo_A Migration inhibitory fa 22.8 2.3E+02 0.0078 20.8 6.9 52 209-260 15-83 (113)
18 3mf7_A CIS-3-chloroacrylic aci 21.7 2E+02 0.0068 23.0 6.2 76 153-228 10-98 (149)
19 2jvf_A De novo protein M7; tet 21.6 2.3E+02 0.0079 20.4 6.4 36 196-239 20-55 (96)
20 3n4h_A Putative tautomerase; C 20.6 2.7E+02 0.0093 21.6 6.8 81 206-286 14-118 (148)
No 1
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.73 E-value=8.2e-17 Score=137.88 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=115.1
Q ss_pred cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757 90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ 169 (295)
Q Consensus 90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~ 169 (295)
||++.+++++++.|.++.+.+.......+|+. ++++||||.+.+.+..++++.+.+.|++
T Consensus 4 Fial~~p~~~~~~l~~~~~~l~~~~~~~~~v~--------------------~~~lHiTL~flg~~~~~~~~~l~~~l~~ 63 (184)
T 1vgj_A 4 FIAIDVNESVRDSLVRAQDYIGSKEAKIKFVE--------------------RENLHITLKFLGEITEEQAEEIKNILKK 63 (184)
T ss_dssp EEEEECCHHHHHHHHHHHHHHCSSSEEEEECC--------------------GGGCEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHHHHhhcCCCcEecC--------------------ccccEEEEEeecCCCHHHHHHHHHHHHH
Confidence 89999999999999999888865422356764 6899999999999999999999999999
Q ss_pred HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCC
Q 040757 170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDV 245 (295)
Q Consensus 170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~ 245 (295)
.++...+|.++++++++|++..++|++|+ +|..+ ++|..|.+.+.+.+...|++..- ++.||||||......
T Consensus 64 ~~~~~~pf~l~l~g~g~F~~~~~p~vl~~-~v~~~--~~L~~L~~~l~~~l~~~g~~~~~-~f~PHiTLar~~~~~ 135 (184)
T 1vgj_A 64 IAEKYKKHEVKVKGIGVFPNPNYIRVIWA-GIEND--EIIREMAREIEDELAKLGFKKEG-NFVAHITLGRVKFVK 135 (184)
T ss_dssp HHTTSBCEEEEEEEEEEEECSSSEEEEEE-EEETC--HHHHHHHHHHHHHHHTTTCCCCC-CCCCEEEEEEEEEES
T ss_pred HHccCCCeEEEEeeEeeCCCCCCCcEEEE-EecCC--HHHHHHHHHHHHHHHHcCCCCCC-CccceEEEEeecccC
Confidence 98888999999999999999999999998 77643 88999999999999999998766 899999999875433
No 2
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.64 E-value=1.3e-15 Score=133.09 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=112.6
Q ss_pred cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757 90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ 169 (295)
Q Consensus 90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~ 169 (295)
||++.+++++.+.|.++.+.+.. ....+|+. ++++||||.+++.+..++++.+.+.|++
T Consensus 4 Fial~~p~~~~~~l~~~~~~l~~-~~~~r~v~--------------------~~~~HiTL~flgev~~~~~~~l~~~l~~ 62 (198)
T 1iuh_A 4 FYAVFLPEEVRAALVEAQTKVRP-FRGWKPVP--------------------PHQLHLTLLFLGERPEEELPDYLALGHR 62 (198)
T ss_dssp EEEEECCHHHHHHHHHHHGGGTT-CTTEEECC--------------------GGGCEEEEEEEEECCGGGHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHhhh-hcCCcccC--------------------CCCCEEEEEeCCcCCHHHHHHHHHHHHH
Confidence 89999998888888888777655 22367764 5789999999999999999999999999
Q ss_pred HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHC-C-----CCCCCCCCCCeeEeeeccC
Q 040757 170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLH-N-----LPEFYKDPRPHISLAWLLG 243 (295)
Q Consensus 170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~f-g-----~p~~Y~~~~fHiSIAW~lg 243 (295)
.++...+|.++++++++|++..++|++|+ +| . .+.|..|.+.|.+.+..+ | ++..-+++.||||||....
T Consensus 63 ~~~~~~pf~l~l~g~g~F~~~~~p~vl~l-~v-~--~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~~~f~PHiTLar~~~ 138 (198)
T 1iuh_A 63 LARLEAPFRARLRGTGYFPNEGTPRVWFA-KA-E--AEGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKA 138 (198)
T ss_dssp HHHHSCCEEEEEEEEEEESSSSSCSEEEE-EE-E--CHHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESS
T ss_pred HhccCCCeEEEEcceEECCCCCCCCEEEE-EC-C--CHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCcEEeEeccC
Confidence 88788999999999999999999999998 66 2 378999999999999998 9 8877778999999998754
Q ss_pred C
Q 040757 244 D 244 (295)
Q Consensus 244 d 244 (295)
.
T Consensus 139 ~ 139 (198)
T 1iuh_A 139 P 139 (198)
T ss_dssp C
T ss_pred c
Confidence 3
No 3
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.55 E-value=2.7e-14 Score=124.42 Aligned_cols=128 Identities=10% Similarity=0.102 Sum_probs=106.4
Q ss_pred cccccCCc-hhHHHHHHHHHHHhhhCCC--ceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHH
Q 040757 90 LPTVLIPL-APKKELAQFLKRVSSILPG--IYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAM 166 (295)
Q Consensus 90 YI~~~~~~-~~~~~L~~li~~~~~~~~~--l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~ 166 (295)
||++.+++ ++.+.|.++.+.+....+. .+|+. ++++||||.+.+.+..++++.+.+.
T Consensus 6 Fial~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v~--------------------~~~~HiTL~flg~~~~~~~~~l~~~ 65 (205)
T 2vfk_A 6 FLSIPITNKKITAGIKVLQNSILRQDNRLTKAMVG--------------------DGSFHITLLVMQLLNEDEVNIGTDA 65 (205)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHHHHCGGGGGGBCC--------------------TTCCEEEEEEECCCSHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHhcCcchHHHhCC--------------------cCccEEEEEEEEcCCHHHHHHHHHH
Confidence 99999997 7999999999888754332 35553 7899999999999999999999999
Q ss_pred HHHHHhcC------ccEEEEeCCeeeecCCCCceEEEEEEeccC-ChhhHHHHHHHHHHHHHHCCCC-CCCCCCCCeeEe
Q 040757 167 LRQRLQSQ------RRYWIDFSKWEAFVNDDRTRTFLSLEVITG-GLLEITKQIQVVNEVYRLHNLP-EFYKDPRPHISL 238 (295)
Q Consensus 167 L~~~l~~~------~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~-~~~~L~~L~~~vd~~l~~fg~p-~~Y~~~~fHiSI 238 (295)
|++....+ .+|.++++++++|++ |++|+ +|..+ +.+.|..|.+.|.+.+...|++ ..++++.|||||
T Consensus 66 l~~~~~~~~~~~~~~pf~l~l~g~~~F~~----~vl~~-~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~~f~PHiTl 140 (205)
T 2vfk_A 66 LLELKPFVEEILEGKHLTLPFHGIGTFQG----QVGFV-KLADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTF 140 (205)
T ss_dssp HHHHHHHHHHHTTTSCCEEEEEEEEEETT----TEEEE-EECCSHHHHHHHHHHHHHHHHHHTTTCCBCCSSCCCCCEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEechhhCCC----cEEEE-eecccccHHHHHHHHHHHHHHHHHcCCCcCCCCCcceEEEE
Confidence 98765544 899999999999997 68877 67643 2368999999999999999994 467889999999
Q ss_pred eecc
Q 040757 239 AWLL 242 (295)
Q Consensus 239 AW~l 242 (295)
|...
T Consensus 141 ar~~ 144 (205)
T 2vfk_A 141 MKLS 144 (205)
T ss_dssp EEGG
T ss_pred Eecc
Confidence 9874
No 4
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.35 E-value=2.1e-11 Score=105.73 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=96.1
Q ss_pred ccc-cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHH
Q 040757 87 DHH-LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVA 165 (295)
Q Consensus 87 ~th-YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~ 165 (295)
..| |+.++ ++++++.|.++++.++...+. .+.++|||| .+.+... .+.+.+
T Consensus 7 ~~~~f~~~p-p~~~~~~l~~~~~~l~~~~~~------------------------~~~~~HiTL--lG~~~~~-~~~l~~ 58 (189)
T 1jh6_A 7 DVYSVWALP-DEESEPRFKKLMEALRSEFTG------------------------PRFVPHVTV--AVSAYLT-ADEAKK 58 (189)
T ss_dssp EEEEEEEEE-CTTTHHHHHHHHHHHHHHHTC------------------------CCCCCCEEE--EEEEEEC-HHHHHH
T ss_pred CcEEEEEEC-CHHHHHHHHHHHHHHHHHcCC------------------------CCCCCEEEE--eCCCCCC-HHHHHH
Confidence 446 77777 678899999999888764321 157899999 7888776 889999
Q ss_pred HHHHHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeec
Q 040757 166 MLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWL 241 (295)
Q Consensus 166 ~L~~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~ 241 (295)
.|++..+..++|.+++++++.+ ...+|++|+ +|.. .++|..|.+.+++. +|++.- +++.||||||+.
T Consensus 59 ~L~~~a~~~~pf~l~l~g~g~~--~~~~rvlw~-~v~~--~~~L~~L~~~v~~~---~g~~~~-~~f~PHlTLar~ 125 (189)
T 1jh6_A 59 MFESACDGLKAYTATVDRVSTG--TFFFQCVFL-LLQT--TPEVMEAGEHCKNH---FNCSTT-TPYMPHLSLLYA 125 (189)
T ss_dssp HHHHHHHTCBCEEEEEEEEEEE--EETTEEEEE-EECC--CHHHHHHHHHHHHH---TTCCCC-SCCCCEEEEECC
T ss_pred HHHHHHhhCCCeEEEEcceecc--CccceEEEE-eecC--CHHHHHHHHHHHHH---hCCCCC-CCCCCeEEEEEe
Confidence 9998888889999999999994 567999998 7863 38899999998875 788764 589999999975
No 5
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.33 E-value=8.6e-12 Score=105.39 Aligned_cols=119 Identities=13% Similarity=0.128 Sum_probs=94.3
Q ss_pred cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757 90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ 169 (295)
Q Consensus 90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~ 169 (295)
||++.+++++++.|.++.+++.. ..+|+ .+ ||||.+++.+...+++.+.+.|++
T Consensus 4 Fiai~~~~~~~~~l~~~~~~~~~---~~~~v----------------------~p-HiTL~f~g~~~~~~~~~l~~~l~~ 57 (171)
T 2d4g_A 4 GIVLFPSKKLQDLANSYRKRYDP---SYSLI----------------------PP-HLTLRASFECAEEKADQLVSHLRN 57 (171)
T ss_dssp EEEBCCCHHHHHHHHHHHHHHCG---GGGTS----------------------CS-CBCCSSCEECCGGGHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHHhCc---ccCCC----------------------CC-eEEeecCCcCChHHHHHHHHHHHH
Confidence 89999998888888888877633 23343 23 999999999999999999999999
Q ss_pred HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeecc
Q 040757 170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLL 242 (295)
Q Consensus 170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~l 242 (295)
.++...+|.+++++++.|+ .++.++|. +|.. .++|..|.+.+.+.+.. ....+++.||||||...
T Consensus 58 ~~~~~~pf~l~l~~~g~F~--~~~~vl~l-~~~~--~~~L~~L~~~l~~~~~~---~~~~~~f~PHiTLar~~ 122 (171)
T 2d4g_A 58 IAKESHPLVLKMTKYSSFA--PVNNVIYI-KAEP--TEELKTLNEKLYTGVLA---GEQEYNFVPHVTVGQNL 122 (171)
T ss_dssp HHHTCCCEEEEEEEEEECT--TTCCCEEE-EECC--CHHHHHHHHHTTSGGGC---SCCCSCCCCEEEEECSC
T ss_pred HHccCCCEEEEECCcEEeC--CCCcEEEE-EccC--ChHHHHHHHHHHhcccc---cccCCCCCCeEEeecCC
Confidence 9888899999999999997 22237776 6663 37899998888776543 23456789999999754
No 6
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=96.07 E-value=0.15 Score=45.79 Aligned_cols=121 Identities=9% Similarity=0.078 Sum_probs=69.5
Q ss_pred chhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEecccccc---c----------cccHHHH
Q 040757 97 LAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPI---R----------VHQIDSI 163 (295)
Q Consensus 97 ~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~l---r----------~~qid~f 163 (295)
.+..+.|.++.+++.+..-.-+.+ +..+..||+||--.+.= + ...++..
T Consensus 53 s~~~~~l~~iq~~L~~~~~~~~~~------------------~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~ 114 (243)
T 2fsq_A 53 SQTESAIVSTRQRFLDMPEASQLA------------------FTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAV 114 (243)
T ss_dssp SHHHHHHHHHHHHHHTSGGGGGEE------------------ECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhccccCcee------------------eCCchhhhhhhccccccccccCCCCCccCcccchHHHH
Confidence 345677777777776543211111 12357899999553331 1 2357777
Q ss_pred HHHHHHHHhc---CccEEEEeCCeeeecCCCCceEEEEEEec---cCChhhHHHHHHHHHHHHHHCCCCC-CCCCCCCee
Q 040757 164 VAMLRQRLQS---QRRYWIDFSKWEAFVNDDRTRTFLSLEVI---TGGLLEITKQIQVVNEVYRLHNLPE-FYKDPRPHI 236 (295)
Q Consensus 164 ~~~L~~~l~~---~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~---~~~~~~L~~L~~~vd~~l~~fg~p~-~Y~~~~fHi 236 (295)
.+.+.+.++. ..+|.+++.++. + + ++.+. +.....|..+.+.+.+ .+|+.. .+..+.|||
T Consensus 115 ~~~~~~~l~~~~~~~p~~~~v~~l~--~----~----~v~L~Pade~~~~~L~~~R~~l~q---~lGi~~p~hd~y~fHI 181 (243)
T 2fsq_A 115 TDYYRDRLSTFPTLPAFNMRVTGLR--P----V----GMVMKGATAEDDSIVALWRDTFAD---FFGYRHPDHDTYEFHI 181 (243)
T ss_dssp HHHHHHHGGGCCCCCCCCEEEEEEE--T----T----EEEEEESSHHHHHHHHHHHHHHHH---HHTCCCTTGGGCCEEE
T ss_pred HHHHHHHHhcccCCCCeEEEEeccc--c----c----eEEEecCCHHHHHHHHHHHHHHHH---HhCCCCCCCcceEEEE
Confidence 7777777755 356777777661 1 1 33443 2223445555555544 556422 234689999
Q ss_pred EeeeccCCCchH
Q 040757 237 SLAWLLGDVSSS 248 (295)
Q Consensus 237 SIAW~lgd~~~~ 248 (295)
|||+....+.++
T Consensus 182 TLgY~~~~l~~e 193 (243)
T 2fsq_A 182 TLSYIVSWFEPE 193 (243)
T ss_dssp ECEEESSCBCGG
T ss_pred EEEeccCCCCHH
Confidence 999987666655
No 7
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=86.56 E-value=2.4 Score=35.62 Aligned_cols=75 Identities=7% Similarity=0.010 Sum_probs=43.5
Q ss_pred CCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCCchHHHHHHHHHHhhhcccccccce
Q 040757 190 DDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKH 269 (295)
Q Consensus 190 ~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~~~~~~~~~~ 269 (295)
+...|.||++. ...-.+.|..+++.+.. .++.+ ...+|||| +|+....+.+....|.+.... ..
T Consensus 5 ~~~~~~f~~~p-p~~~~~~l~~~~~~l~~---~~~~~----~~~~HiTL---lG~~~~~~~~l~~~L~~~a~~-----~~ 68 (189)
T 1jh6_A 5 KKDVYSVWALP-DEESEPRFKKLMEALRS---EFTGP----RFVPHVTV---AVSAYLTADEAKKMFESACDG-----LK 68 (189)
T ss_dssp CCEEEEEEEEE-CTTTHHHHHHHHHHHHH---HHTCC----CCCCCEEE---EEEEEECHHHHHHHHHHHHHT-----CB
T ss_pred CCCcEEEEEEC-CHHHHHHHHHHHHHHHH---HcCCC----CCCCEEEE---eCCCCCCHHHHHHHHHHHHhh-----CC
Confidence 45678999977 33333455555555433 44543 35899999 577665544443444332211 13
Q ss_pred eeEEEeceEEE
Q 040757 270 FFSCKFGGIHC 280 (295)
Q Consensus 270 ~~~~~v~~v~c 280 (295)
.+.+.++++-+
T Consensus 69 pf~l~l~g~g~ 79 (189)
T 1jh6_A 69 AYTATVDRVST 79 (189)
T ss_dssp CEEEEEEEEEE
T ss_pred CeEEEEcceec
Confidence 46777788877
No 8
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=84.49 E-value=2.7 Score=34.52 Aligned_cols=77 Identities=17% Similarity=0.257 Sum_probs=40.3
Q ss_pred eEEEEEEeccCChhhHHHHHHHHHHHHHHCCC-CCCCCCCCCeeEeeeccCCCch-HHHHHHHHHHhhhcccccccceee
Q 040757 194 RTFLSLEVITGGLLEITKQIQVVNEVYRLHNL-PEFYKDPRPHISLAWLLGDVSS-SLKRVVVEEMKRLSVESSLHKHFF 271 (295)
Q Consensus 194 R~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~-p~~Y~~~~fHiSIAW~lgd~~~-~l~~~~~~l~~~~~~~~~~~~~~~ 271 (295)
|.|+++.+. +++.+.+..+-+.+...+. -....+..+||||+.. |+..+ .+.+....+.+.... ...+
T Consensus 2 R~Fial~~p----~~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~fl-g~~~~~~~~~l~~~l~~~~~~-----~~pf 71 (184)
T 1vgj_A 2 RAFIAIDVN----ESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFL-GEITEEQAEEIKNILKKIAEK-----YKKH 71 (184)
T ss_dssp EEEEEEECC----HHHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEE-ESCCHHHHHHHHHHHHHHHTT-----SBCE
T ss_pred eEEEEEcCC----HHHHHHHHHHHHHHhhcCCCcEecCccccEEEEEee-cCCCHHHHHHHHHHHHHHHcc-----CCCe
Confidence 899998875 3444444444333332211 1222345679999964 66554 344433444433221 1345
Q ss_pred EEEeceEEE
Q 040757 272 SCKFGGIHC 280 (295)
Q Consensus 272 ~~~v~~v~c 280 (295)
.+.++++-+
T Consensus 72 ~l~l~g~g~ 80 (184)
T 1vgj_A 72 EVKVKGIGV 80 (184)
T ss_dssp EEEEEEEEE
T ss_pred EEEEeeEee
Confidence 666677655
No 9
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=80.96 E-value=11 Score=31.29 Aligned_cols=85 Identities=19% Similarity=0.206 Sum_probs=43.5
Q ss_pred CceEEEEEEeccCChhhHHHHHHHHHHHHH-HC-CC-CCCCCCCCCeeEeeeccCCCch-HHHHHHHHHHhhhcccc-cc
Q 040757 192 RTRTFLSLEVITGGLLEITKQIQVVNEVYR-LH-NL-PEFYKDPRPHISLAWLLGDVSS-SLKRVVVEEMKRLSVES-SL 266 (295)
Q Consensus 192 ~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~-~f-g~-p~~Y~~~~fHiSIAW~lgd~~~-~l~~~~~~l~~~~~~~~-~~ 266 (295)
+.|.|+++.+.. +++...+..+-+.+. .. ++ -.+..+..+||||+.. |+..+ .+.+....+.+...... ..
T Consensus 2 ~~r~Fial~~~~---~~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~fl-g~~~~~~~~~l~~~l~~~~~~~~~~~ 77 (205)
T 2vfk_A 2 QPNYFLSIPITN---KKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVM-QLLNEDEVNIGTDALLELKPFVEEIL 77 (205)
T ss_dssp CCCEEEEEECCC---HHHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEE-CCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEcCC---HHHHHHHHHHHHHHHhcCcchHHHhCCcCccEEEEEEE-EcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999998863 244444444433332 22 32 2344567899999964 76544 34443333332211000 00
Q ss_pred cceeeEEEeceEEE
Q 040757 267 HKHFFSCKFGGIHC 280 (295)
Q Consensus 267 ~~~~~~~~v~~v~c 280 (295)
....+.+.++++-+
T Consensus 78 ~~~pf~l~l~g~~~ 91 (205)
T 2vfk_A 78 EGKHLTLPFHGIGT 91 (205)
T ss_dssp TTSCCEEEEEEEEE
T ss_pred CCCCcEEEEechhh
Confidence 00345666777665
No 10
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=78.14 E-value=4 Score=34.29 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=38.9
Q ss_pred eEEEEEEeccCChhhHHHHHHHHHHHHHHCCCC-CCCCCCCCeeEeeeccCCCch-HHHHHHHHHHhhhcccccccceee
Q 040757 194 RTFLSLEVITGGLLEITKQIQVVNEVYRLHNLP-EFYKDPRPHISLAWLLGDVSS-SLKRVVVEEMKRLSVESSLHKHFF 271 (295)
Q Consensus 194 R~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p-~~Y~~~~fHiSIAW~lgd~~~-~l~~~~~~l~~~~~~~~~~~~~~~ 271 (295)
|.|+++.+. +++.+.+..+-+.+.. ++. .......+||||+. +|+..+ .+.+....+.+.... ...+
T Consensus 2 RlFial~~p----~~~~~~l~~~~~~l~~-~~~~r~v~~~~~HiTL~f-lgev~~~~~~~l~~~l~~~~~~-----~~pf 70 (198)
T 1iuh_A 2 RLFYAVFLP----EEVRAALVEAQTKVRP-FRGWKPVPPHQLHLTLLF-LGERPEEELPDYLALGHRLARL-----EAPF 70 (198)
T ss_dssp EEEEEEECC----HHHHHHHHHHHGGGTT-CTTEEECCGGGCEEEEEE-EEECCGGGHHHHHHHHHHHHHH-----SCCE
T ss_pred EEEEEEeCC----HHHHHHHHHHHHHhhh-hcCCcccCCCCCEEEEEe-CCcCCHHHHHHHHHHHHHHhcc-----CCCe
Confidence 899998875 3344444333333322 111 12234569999996 466443 444433444332211 1245
Q ss_pred EEEeceEEE
Q 040757 272 SCKFGGIHC 280 (295)
Q Consensus 272 ~~~v~~v~c 280 (295)
.+.++++-+
T Consensus 71 ~l~l~g~g~ 79 (198)
T 1iuh_A 71 RARLRGTGY 79 (198)
T ss_dssp EEEEEEEEE
T ss_pred EEEEcceEE
Confidence 666666655
No 11
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=66.66 E-value=13 Score=29.79 Aligned_cols=72 Identities=13% Similarity=0.045 Sum_probs=34.7
Q ss_pred eEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCCc-hHHHHHHHHHHhhhcccccccceeeE
Q 040757 194 RTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVS-SSLKRVVVEEMKRLSVESSLHKHFFS 272 (295)
Q Consensus 194 R~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~~-~~l~~~~~~l~~~~~~~~~~~~~~~~ 272 (295)
|.|+++.+. +++...+..+-+.+.. .++.-.+||||+.. |+.. +.+.+....+.+.... ...+.
T Consensus 2 R~Fiai~~~----~~~~~~l~~~~~~~~~-----~~~~v~pHiTL~f~-g~~~~~~~~~l~~~l~~~~~~-----~~pf~ 66 (171)
T 2d4g_A 2 KYGIVLFPS----KKLQDLANSYRKRYDP-----SYSLIPPHLTLRAS-FECAEEKADQLVSHLRNIAKE-----SHPLV 66 (171)
T ss_dssp EEEEEBCCC----HHHHHHHHHHHHHHCG-----GGGTSCSCBCCSSC-EECCGGGHHHHHHHHHHHHHT-----CCCEE
T ss_pred eEEEEEeCC----HHHHHHHHHHHHHhCc-----ccCCCCCeEEeecC-CcCChHHHHHHHHHHHHHHcc-----CCCEE
Confidence 899998765 3344443333333311 12333449999964 5433 3344433334332211 12345
Q ss_pred EEeceEEE
Q 040757 273 CKFGGIHC 280 (295)
Q Consensus 273 ~~v~~v~c 280 (295)
+.++++-+
T Consensus 67 l~l~~~g~ 74 (171)
T 2d4g_A 67 LKMTKYSS 74 (171)
T ss_dssp EEEEEEEE
T ss_pred EEECCcEE
Confidence 56666544
No 12
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=40.03 E-value=1.3e+02 Score=23.51 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=61.8
Q ss_pred ceEEeccccccccccHHHHHHHHHHHHhc---Cc---cEEEE--eCCeee-----ecCCCCceEEEEEEec--cC-Chhh
Q 040757 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQS---QR---RYWID--FSKWEA-----FVNDDRTRTFLSLEVI--TG-GLLE 208 (295)
Q Consensus 145 lHISLSr~~~lr~~qid~f~~~L~~~l~~---~~---~F~l~--~~~l~v-----f~N~e~tR~Fl~l~V~--~~-~~~~ 208 (295)
+||+|..- .+.+|+..+.+.+.+++.. ++ .|.+- ...=.+ |...+++.-|..+.|. .| ..++
T Consensus 3 v~I~l~~G--rs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~~gRt~Eq 80 (136)
T 3mlc_A 3 IRIDLTSD--RSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQAGRTIET 80 (136)
T ss_dssp EEEEEETT--SCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEETTCCHHH
T ss_pred EEEEEeCC--CCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEECCCCCHHH
Confidence 57777765 6788999999999888854 22 23322 222233 2233566655555554 23 3466
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCeeEee------eccCCCchH
Q 040757 209 ITKQIQVVNEVYRLHNLPEFYKDPRPHISLA------WLLGDVSSS 248 (295)
Q Consensus 209 L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIA------W~lgd~~~~ 248 (295)
-..|++.+.+.++.+|.++. .-+|.|- |..|....+
T Consensus 81 K~~L~~~it~~l~~lg~~~~----~v~V~i~E~~~~~W~~ggG~aq 122 (136)
T 3mlc_A 81 KQRVFAAITESLAPIGVAGS----DVFIAITENAPHDWSFGFGSAQ 122 (136)
T ss_dssp HHHHHHHHHHHHTTTTCCGG----GEEEEEEEECGGGEECBTTBCH
T ss_pred HHHHHHHHHHHHHHcCCCcc----cEEEEEEEcCHHHeeecCcEee
Confidence 77888888887777888865 4556654 777776654
No 13
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=35.08 E-value=1.5e+02 Score=22.64 Aligned_cols=81 Identities=5% Similarity=-0.053 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHH-HCCCCCCCC------------------------CCCCeeEeeeccCCCchHHHHHHHHHHhhh
Q 040757 206 LLEITKQIQVVNEVYR-LHNLPEFYK------------------------DPRPHISLAWLLGDVSSSLKRVVVEEMKRL 260 (295)
Q Consensus 206 ~~~L~~L~~~vd~~l~-~fg~p~~Y~------------------------~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~ 260 (295)
..+...|++.+.+++. .+|.|+.+. ++..||+|- .-|...++-++..+.+.+.+
T Consensus 14 ~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g~~l~~~~~~~~~~I~i~-~~grt~eqK~~l~~~l~~~l 92 (131)
T 2aal_A 14 DAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVI-SRPRSEEQKVCFYKLLTGAL 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECCTTSCCCCCTTCEEEEEE-ESCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCCccCCcCCCCCeEEEEEE-eCCCCHHHHHHHHHHHHHHH
Confidence 3458889999988775 689998842 245688888 55644444444455555443
Q ss_pred cccccccceeeEEEeceE---EEeeCCeeE
Q 040757 261 SVESSLHKHFFSCKFGGI---HCKIGKKTY 287 (295)
Q Consensus 261 ~~~~~~~~~~~~~~v~~v---~ckiGNk~~ 287 (295)
..........+.+.+..+ ..-+|+..+
T Consensus 93 ~~~lg~~~~~v~I~i~e~~~~~wg~gG~~~ 122 (131)
T 2aal_A 93 ERDCGISPDDVIVALVENSDADWSFGRGRA 122 (131)
T ss_dssp HHHHCCCGGGEEEEEEECCGGGEECBTTBC
T ss_pred HHHhCcCcccEEEEEEEcCHHHeeECCEEh
Confidence 321122234456666655 245555554
No 14
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=27.84 E-value=2.2e+02 Score=22.23 Aligned_cols=72 Identities=10% Similarity=-0.005 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHHH-HHCCCCCCCC------------------------CCCCeeEeeeccCCCchHHHHHHHHHHhhh
Q 040757 206 LLEITKQIQVVNEVY-RLHNLPEFYK------------------------DPRPHISLAWLLGDVSSSLKRVVVEEMKRL 260 (295)
Q Consensus 206 ~~~L~~L~~~vd~~l-~~fg~p~~Y~------------------------~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~ 260 (295)
.+++..|.+.|.++| +.+|.|+.+. +...+|.|-..-|-..++-++.++.+.+.+
T Consensus 13 ~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~~gRt~EqK~~L~~~it~~l 92 (136)
T 3mlc_A 13 REQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQAGRTIETKQRVFAAITESL 92 (136)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 478899999998877 5599999874 234566666544544444444555555544
Q ss_pred cccccccceeeEEEeceE
Q 040757 261 SVESSLHKHFFSCKFGGI 278 (295)
Q Consensus 261 ~~~~~~~~~~~~~~v~~v 278 (295)
.........+.+.+..+
T Consensus 93 -~~lg~~~~~v~V~i~E~ 109 (136)
T 3mlc_A 93 -APIGVAGSDVFIAITEN 109 (136)
T ss_dssp -TTTTCCGGGEEEEEEEE
T ss_pred -HHcCCCcccEEEEEEEc
Confidence 22223344455555554
No 15
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=24.71 E-value=2.1e+02 Score=21.09 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH-HHCCCCCCCC----------------CCCCeeEeeeccCCCchHHHHHHHHHHhhh
Q 040757 209 ITKQIQVVNEVY-RLHNLPEFYK----------------DPRPHISLAWLLGDVSSSLKRVVVEEMKRL 260 (295)
Q Consensus 209 L~~L~~~vd~~l-~~fg~p~~Y~----------------~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~ 260 (295)
...|++.+.+++ +.+|-|+-|. ++.+.|.|-..-|-..++-++..+.+.+.+
T Consensus 16 ~~~l~~~~~~~l~~~lgkp~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l 84 (115)
T 2xcz_A 16 ANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTCYVEVKSIGALDGSRTQEVSELVCGHI 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHEEEEEECCCceEECCCCCcEEEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 677888887766 5688888774 466777777432233333334445554433
No 16
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=24.18 E-value=2.3e+02 Score=21.35 Aligned_cols=81 Identities=14% Similarity=0.093 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHHHH-HHCCCCCC--CC-----------------CCCCeeEeeeccCCCchHHHHHHHHHHhhhccccc
Q 040757 206 LLEITKQIQVVNEVY-RLHNLPEF--YK-----------------DPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESS 265 (295)
Q Consensus 206 ~~~L~~L~~~vd~~l-~~fg~p~~--Y~-----------------~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~~~~~~ 265 (295)
.++...|++.+.+++ +.+|.|+. |- ++.+||+|-..-|...++-++..+.+.+.+.....
T Consensus 12 ~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg 91 (128)
T 1mww_A 12 APRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLG 91 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCCCCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 366778889998877 56899988 31 36678999865455444444444555443321111
Q ss_pred ccceeeEEEeceE---EEeeCCee
Q 040757 266 LHKHFFSCKFGGI---HCKIGKKT 286 (295)
Q Consensus 266 ~~~~~~~~~v~~v---~ckiGNk~ 286 (295)
.....+.+.+..+ ..-+|+..
T Consensus 92 ~~~~~v~V~i~e~~~~~wg~gG~~ 115 (128)
T 1mww_A 92 IRAHDVEITIKEQPAHCWGFRGMT 115 (128)
T ss_dssp CCGGGEEEEEEEECGGGEEETTEE
T ss_pred cChhhEEEEEEECCHHHeeECCEE
Confidence 2233455665555 24555554
No 17
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=22.77 E-value=2.3e+02 Score=20.78 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHH-HHCCCCCCCC----------------CCCCeeEeeeccCCCchHHHHHHHHHHhhh
Q 040757 209 ITKQIQVVNEVY-RLHNLPEFYK----------------DPRPHISLAWLLGDVSSSLKRVVVEEMKRL 260 (295)
Q Consensus 209 L~~L~~~vd~~l-~~fg~p~~Y~----------------~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~ 260 (295)
...|++.+.++| +.+|-|.-|. ++.+.|.|-..-|-..++-++..+.+.+.+
T Consensus 15 ~~~l~~~l~~~l~~~l~kPe~~~~v~~~~~~~~~~~g~~~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l 83 (113)
T 1hfo_A 15 PSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKLFDHL 83 (113)
T ss_dssp CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHEEEEEeCCccEEecCCCCCeEEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 455677776666 5689998774 567777777442333333334445554433
No 18
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=21.69 E-value=2e+02 Score=23.03 Aligned_cols=76 Identities=7% Similarity=0.024 Sum_probs=51.0
Q ss_pred cccccccHHHHHHHHHHHHhc---Ccc--EEEEeCC---eeeec-CCCC--ceEEEEEEeccC-ChhhHHHHHHHHHHHH
Q 040757 153 VPIRVHQIDSIVAMLRQRLQS---QRR--YWIDFSK---WEAFV-NDDR--TRTFLSLEVITG-GLLEITKQIQVVNEVY 220 (295)
Q Consensus 153 ~~lr~~qid~f~~~L~~~l~~---~~~--F~l~~~~---l~vf~-N~e~--tR~Fl~l~V~~~-~~~~L~~L~~~vd~~l 220 (295)
+.++.+|+..+.+.+.+++.. .++ +.+.|.. =.+|. ...+ .+.|+-+.+..| ..++-..|.++|.+.+
T Consensus 10 ~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~eqK~~L~~~I~~~l 89 (149)
T 3mf7_A 10 DRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSADLKGQLAQRIVDDV 89 (149)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 556789999999999998864 344 3333332 23555 2222 357777777655 3466778999998877
Q ss_pred -HHCCCCCC
Q 040757 221 -RLHNLPEF 228 (295)
Q Consensus 221 -~~fg~p~~ 228 (295)
+..|.++.
T Consensus 90 ~~~~g~~~e 98 (149)
T 3mf7_A 90 SVAAEIDRK 98 (149)
T ss_dssp HHHTTCCGG
T ss_pred HHHcCCChh
Confidence 67899875
No 19
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=21.63 E-value=2.3e+02 Score=20.39 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=26.2
Q ss_pred EEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEee
Q 040757 196 FLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLA 239 (295)
Q Consensus 196 Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIA 239 (295)
=+-++|+.| .+|.+.++.++++++..|-. ...|+|.
T Consensus 20 eidirvstg--keleralqelekalaragar------nvqitis 55 (96)
T 2jvf_A 20 EIDIRVSTG--KELERALQELEKALARAGAR------NVQITIS 55 (96)
T ss_dssp EEEEECCSS--SHHHHHHHHHHHHHHHHTCS------EEEEEEE
T ss_pred EEEEEEccc--HHHHHHHHHHHHHHHhcccc------ceEEEEE
Confidence 355677755 68999999999999988843 3456665
No 20
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=20.60 E-value=2.7e+02 Score=21.62 Aligned_cols=81 Identities=4% Similarity=0.019 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHHHHH-CCCCCCCC--------------------CCCCeeEeeeccCCCchHHHHHHHHHHhhhcccc
Q 040757 206 LLEITKQIQVVNEVYRL-HNLPEFYK--------------------DPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVES 264 (295)
Q Consensus 206 ~~~L~~L~~~vd~~l~~-fg~p~~Y~--------------------~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~~~~~ 264 (295)
.++...|++.+.+++.+ +|.|+.|. +..++|.|--.-|-..++.++.++.+.+.+....
T Consensus 14 ~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~~~s~~~~~I~i~~~~Grt~eqk~~l~~~l~~~l~~~l 93 (148)
T 3n4h_A 14 REAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQSASENHIWVQATIRSGRTEKQKEELLLRLTQEIALIL 93 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTEECCTTCEEEEEEEESCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCEEccCcEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHh
Confidence 46778899999887755 99999885 1235665553335443443444455544332111
Q ss_pred cccceeeEEEeceEE---EeeCCee
Q 040757 265 SLHKHFFSCKFGGIH---CKIGKKT 286 (295)
Q Consensus 265 ~~~~~~~~~~v~~v~---ckiGNk~ 286 (295)
......+.+.+..+. ..+|+++
T Consensus 94 gi~~~~v~V~i~E~~~~~wg~gG~~ 118 (148)
T 3n4h_A 94 GIPNEEVWVYITEIPGSNMTEYGRL 118 (148)
T ss_dssp TCCGGGEEEEEEEECGGGCCCSSCC
T ss_pred CcCcCcEEEEEEEcCHHHeeECCEE
Confidence 222334556555554 4444443
Done!