BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040758
(788 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/406 (22%), Positives = 164/406 (40%), Gaps = 95/406 (23%)
Query: 351 YAGEDNEMQLLLQRFRSAFEN-LTRLLISSRNLEFFTSGYRYLIQILPAAVV---APMYF 406
+A EDNE + F N LTR L +R + + + I P V+ A +
Sbjct: 216 FAIEDNEAK----NFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAI 271
Query: 407 SGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSE 466
SG I G + V + G +V F ++ A +DR+ + D
Sbjct: 272 SGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID------------ 319
Query: 467 PLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEK 526
+ + GA E Q +DI+ ++ + ++A +++D++L I +
Sbjct: 320 ------------EDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG 367
Query: 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586
E + +G SG GK++L+ + + G+I ++ N+
Sbjct: 368 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL--------------------IDGHNIKD 407
Query: 587 ELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY--PTWT-EEVKPASDAAKSAGLVPFLT 643
LT S+ RN G+ + Q + ++++ ++ PT T EEV A+ A + + L
Sbjct: 408 FLTGSL-RNQIGL--VQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLP 464
Query: 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFA 703
E VG + K LS G++QRL+ A
Sbjct: 465 QGYDTE-VGERGVK----------------------------------LSGGQKQRLSIA 489
Query: 704 RLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
R+ L+ P I++LDE+TSALD +E+ + E ++ + T + V HR
Sbjct: 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 66/283 (23%)
Query: 470 KICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKAT-LVRDLSLVINEKEH 528
KI S+ SF S P+ Q L+ +++ P+ K +++ L+L + +
Sbjct: 363 KIIDNKPSIDSFSKS----GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQT 418
Query: 529 LLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588
+ ++G SG GK++ ++ M L+ G ++ ++G+
Sbjct: 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVS-------------------------IDGQD 453
Query: 589 TRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL 648
R++N V +L + ++G + Q+ P L +
Sbjct: 454 IRTIN-----VRYLRE----IIGVVSQE-----------------------PVLFATTIA 481
Query: 649 ENVGRKSSKPSTDDLIKALEDVKL-GYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLL 706
EN+ + D++ KA+++ +I+ + DT E + LS G++QR+A AR L
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541
Query: 707 LSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHR 747
+ P+I+LLDE+TSALD +EA + ++ A G T I + HR
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR 584
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 147/357 (41%), Gaps = 81/357 (22%)
Query: 402 APMYFS--GKIEFG--VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLD 457
A MYFS FG ++ Q + F ++L FS IV+ A+ S+ D
Sbjct: 943 AMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP-----DYAKA 997
Query: 458 SSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKAT-LV 516
+ S+ ++ +EK + S+ T L P + + + PT + ++
Sbjct: 998 TVSASHIIRIIEKTP----EIDSYSTQ----GLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+ LSL + + + L ++G SG GK+++++ + + G + D +E
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL---DGKEIK-------- 1098
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV--KPASDAAK 634
++N Q + +L + Q P + S+ + + Y + V + AAK
Sbjct: 1099 -QLNVQWLRAQLG-----------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 635 SAGLVPFLTSAQKLEN--VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVL 692
A + F+ S N VG K ++ L
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQ----------------------------------L 1172
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHR 747
S G++QR+A AR L+ +P I+LLDE+TSALD +E + E ++ A G T I + HR
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 98/242 (40%), Gaps = 75/242 (30%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
T + +++L I + E + ++GPSGSGK++LL +AG++ GKI F D
Sbjct: 17 TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF----------DEKD 66
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
V L +N+ L++ W
Sbjct: 67 VTELPPKDRNVG-------------------------------LVFQNWA---------- 85
Query: 634 KSAGLVPFLTSAQKLENVG-----RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEW 688
L P +T + N+ RK+ + D K E K+ +I LN Y W
Sbjct: 86 ----LYPHMTVYK---NIAFPLELRKAPREEIDK--KVREVAKMLHIDKLLNR----YPW 132
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE----ANEAHLYEQIEAAGITYISV 744
LS G+QQR+A AR L+ +P+++LLDE S LD A L + GIT + V
Sbjct: 133 Q--LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYV 190
Query: 745 GH 746
H
Sbjct: 191 TH 192
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 125/283 (44%), Gaps = 66/283 (23%)
Query: 470 KICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKAT-LVRDLSLVINEKEH 528
KI S+ SF S P+ Q L+ +++ P+ K +++ L+L + +
Sbjct: 363 KIIDNKPSIDSFSKS----GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQT 418
Query: 529 LLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588
+ ++G SG GK++ ++ M L+ G ++ ++G+
Sbjct: 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVS-------------------------IDGQD 453
Query: 589 TRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL 648
R++N V +L + ++G + Q+ P L +
Sbjct: 454 IRTIN-----VRYLRE----IIGVVSQE-----------------------PVLFATTIA 481
Query: 649 ENVGRKSSKPSTDDLIKALEDVKL-GYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLL 706
EN+ + D++ KA+++ +I+ + DT E + LS G++QR+A AR L
Sbjct: 482 ENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARAL 541
Query: 707 LSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHR 747
+ P+I+LLDE+TSALD +EA + ++ A G T I + HR
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHR 584
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 84/357 (23%), Positives = 147/357 (41%), Gaps = 81/357 (22%)
Query: 402 APMYFS--GKIEFG--VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLD 457
A MYFS FG ++ Q + F ++L FS IV+ A+ S+ D
Sbjct: 943 AMMYFSYAACFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP-----DYAKA 997
Query: 458 SSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKAT-LV 516
+ S+ ++ +EK + S+ T L P + + + PT + ++
Sbjct: 998 TVSASHIIRIIEKTP----EIDSYSTQ----GLKPNMLEGNVQFSGVVFNYPTRPSIPVL 1049
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+ LSL + + + L ++G SG GK+++++ + + G + D +E
Sbjct: 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL---DGKEIK-------- 1098
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV--KPASDAAK 634
++N Q + +L + Q P + S+ + + Y + V + AAK
Sbjct: 1099 -QLNVQWLRAQLG-----------IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAK 1146
Query: 635 SAGLVPFLTSAQKLEN--VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVL 692
A + F+ S N VG K ++ L
Sbjct: 1147 EANIHQFIDSLPDKYNTRVGDKGTQ----------------------------------L 1172
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHR 747
S G++QR+A AR L+ +P I+LLDE+TSALD +E + E ++ A G T I + HR
Sbjct: 1173 SGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 114/269 (42%), Gaps = 66/269 (24%)
Query: 488 GALSPEKS-QKLLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545
G + EKS Q L+ +++ P + + +D SL I ++GPSGSGK+++L
Sbjct: 330 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 389
Query: 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605
+ L+ G I+ D H + + +N RS
Sbjct: 390 LLRLYDPASGTISL--------DGH---------DIRQLNPVWLRSK------------- 419
Query: 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS--TDDL 663
+G++ Q+ P L S EN+ + PS T +
Sbjct: 420 ----IGTVSQE-----------------------PILFSCSIAENIAYGADDPSSVTAEE 452
Query: 664 IKALEDVK--LGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS 720
I+ + +V + +I +T E +LS G++QR+A AR LL P+I+LLDE+TS
Sbjct: 453 IQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATS 512
Query: 721 ALDEANEAHLYEQIE--AAGITYISVGHR 747
ALD NE + E ++ G T + + HR
Sbjct: 513 ALDAENEYLVQEALDRLMDGRTVLVIAHR 541
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 98/239 (41%), Gaps = 61/239 (25%)
Query: 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572
T V+DLSL I + E L+++GPSG GKT+ LR +AGL RG+I Y++D D
Sbjct: 19 VTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI--YIEDNLVADPE-- 74
Query: 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDA 632
+GV F+P + V + +YP T
Sbjct: 75 ------------------------KGV-FVPPKERDVAXVFQSYALYPHXT--------- 100
Query: 633 AKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL-EDVKLGYILPRLNSLDTTYEWSSV 691
+ + KL RK K D ++ + E + L +L R
Sbjct: 101 -----VYDNIAFPLKL----RKVPKQEIDKRVREVAEXLGLTELLNR---------KPRE 142
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDE----ANEAHLYEQIEAAGITYISVGH 746
LS G++QR+A R ++ +P++ L DE S LD A L + G+T I V H
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTIYVTH 201
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 120/274 (43%), Gaps = 67/274 (24%)
Query: 478 VKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGS 537
VK P + G L +K + ++ E++ + TL +D+S + + L ++GPSG+
Sbjct: 38 VKDLPGA---GPLRFQKGR--IEFENVHFSYADGRETL-QDVSFTVMPGQTLALVGPSGA 91
Query: 538 GKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS--LEVNSQNMNGELTRSMNRN 595
GK+++LR + FY D+ S + ++ Q+++ ++T++ R+
Sbjct: 92 GKSTILRLL----------FRFY------------DISSGCIRIDGQDIS-QVTQASLRS 128
Query: 596 SRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655
GV +PQ + ++ + Y T AA++AG+
Sbjct: 129 HIGV--VPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI----------------- 169
Query: 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLL 715
D I A + GY E LS GE+QR+A AR +L P I+LL
Sbjct: 170 -----HDAIMAFPE---GY-------RTQVGERGLKLSGGEKQRVAIARTILKAPGIILL 214
Query: 716 DESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
DE+TSALD +NE + + A T I V HR
Sbjct: 215 DEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 106/238 (44%), Gaps = 61/238 (25%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
+++ LS + + L ++GPSG GK++++ + + G+I +
Sbjct: 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIF---------------I 1138
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
D E+ + +N E TRS + + Q P + S+ + +IY
Sbjct: 1139 DGSEI--KTLNPEHTRSQ------IAIVSQEPTLFDCSIAENIIY--------------- 1175
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED---VKLGYILPRLNSLDTTYEWSSV 691
GL P + ++E R ++ + I L + ++G + +
Sbjct: 1176 --GLDPSSVTMAQVEEAARLAN---IHNFIAELPEGFETRVG-------------DRGTQ 1217
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHR 747
LS G++QR+A AR L+ P+I+LLDE+TSALD +E + E ++ A G T I + HR
Sbjct: 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 57/235 (24%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
++R ++L +N + + ++G SG GK++++ + + +GKIT +
Sbjct: 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKIT---------------I 477
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
D ++V +++N E R + V + Q P L T E + +
Sbjct: 478 DGVDV--RDINLEFLR------KNVAVVSQEP---------ALFNCTIEENISLGKEGIT 520
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSL 694
+V +A K+ N + IK L + GY N+L + + LS
Sbjct: 521 REEMV----AACKMANA---------EKFIKTLPN---GY-----NTL--VGDRGTQLSG 557
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
G++QR+A AR L+ P+I+LLDE+TSALD +E + + ++ A G T I + HR
Sbjct: 558 GQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 66/249 (26%), Positives = 109/249 (43%), Gaps = 58/249 (23%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
+++ +SL + + E + ++G SGSGK++LL + L + GK+ K+ + T+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN------ 72
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
E S+ RN R + F+ Q Y++ P A +
Sbjct: 73 ------------EKELSLLRN-RKLGFVFQFHYLI------------------PELTALE 101
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSL 694
+ +VP L + +K +K + L L ++ LG L R YE LS
Sbjct: 102 NV-IVPMLKMGKP-----KKEAKERGEYL---LSELGLGDKLSR-----KPYE----LSG 143
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH---LYEQIEAAGITYISVGHRRTLY 751
GEQQR+A AR L ++P ++ DE T LD AN ++ +I G + + V H R L
Sbjct: 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203
Query: 752 DFHKRVLRI 760
+ R L +
Sbjct: 204 ELTHRTLEM 212
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 66/268 (24%)
Query: 488 GALSPEKS-QKLLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545
G + EKS Q L+ +++ P + + +D SL I ++GPSGSGK+++L
Sbjct: 361 GVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSL 420
Query: 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605
+ L+ G I+ D H + + +N RS
Sbjct: 421 LLRLYDPASGTISL--------DGH---------DIRQLNPVWLRSK------------- 450
Query: 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS--TDDL 663
+G++ Q+ P L S EN+ + PS T +
Sbjct: 451 ----IGTVSQE-----------------------PILFSCSIAENIAYGADDPSSVTAEE 483
Query: 664 IKALEDVK--LGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS 720
I+ + +V + +I +T E +LS G++QR+A AR LL P+I+LLDE+TS
Sbjct: 484 IQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATS 543
Query: 721 ALDEANEAHLYEQIE--AAGITYISVGH 746
ALD NE + E ++ G T + + H
Sbjct: 544 ALDAENEYLVQEALDRLMDGRTVLVIAH 571
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 105/262 (40%), Gaps = 61/262 (23%)
Query: 489 ALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
L P S L I+ LK +++ +++ I E E ++V+GPSGSGK++ LR +
Sbjct: 13 GLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNL 72
Query: 549 LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM 608
L G+I +D + + +++ N +N+ V + QR
Sbjct: 73 LEDFDEGEII---------------IDGINLKAKDTN------LNKVREEVGMVFQR--- 108
Query: 609 VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK-PSTDDLIKAL 667
L P +T + K K P KA+
Sbjct: 109 ---------------------------FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAM 141
Query: 668 EDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727
E +L ++ D + + LS G+ QR+A AR L +P+I+L DE TSALD
Sbjct: 142 E------LLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMV 195
Query: 728 AH---LYEQIEAAGITYISVGH 746
+ +Q+ G+T + V H
Sbjct: 196 GEVLSVMKQLANEGMTMVVVTH 217
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 67/253 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+++++L I E E + +MGPSGSGK+++L + L G++ Y+ + T+D+D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV--YIDN-----IKTNDLD 73
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
+ ELT+ + R+ G F QQ
Sbjct: 74 ---------DDELTK-IRRDKIGFVF-------------QQF------------------ 92
Query: 636 AGLVPFLTSAQKLENV------GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
L+P LT+ LENV + + + +ALE +K+ + R +
Sbjct: 93 -NLIPLLTA---LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-----HKP 143
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVG 745
+ LS G+QQR+A AR L + P I+L D+ T ALD + + + E G T + V
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203
Query: 746 HRRTLYDFHKRVL 758
H + F +R++
Sbjct: 204 HDINVARFGERII 216
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 67/253 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+++++L I E E + +MGPSGSGK+++L + L G++ Y+ + T+D+D
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV--YI-----DNIKTNDLD 73
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
+ ELT+ + R+ G F QQ
Sbjct: 74 ---------DDELTK-IRRDKIGFVF-------------QQF------------------ 92
Query: 636 AGLVPFLTSAQKLENV------GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
L+P LT+ LENV + + + +ALE +K+ + R +
Sbjct: 93 -NLIPLLTA---LENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-----HKP 143
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVG 745
+ LS G+QQR+A AR L + P I+L D+ T ALD + + + E G T + V
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVT 203
Query: 746 HRRTLYDFHKRVL 758
H + F +R++
Sbjct: 204 HDINVARFGERII 216
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 61/281 (21%)
Query: 484 SKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSL 542
S +G+L+P + L+ +D++ P +++ L+ + + ++GP+GSGK+++
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602
+ L+ GK+ + + D H V
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVG---------------------- 99
Query: 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD 662
Q P + S R+ + Y LT +E + + + D
Sbjct: 100 -QEPLLFGRSFRENIAY---------------------GLTRTPTMEEITAVAMESGAHD 137
Query: 663 LIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
I GY DT E + LS G++Q +A AR L+ KP++++LD++TSA
Sbjct: 138 FISGFPQ---GY--------DTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSA 186
Query: 722 LDEANEAH----LYEQIEAAGITYISVGHRRTLYDFHKRVL 758
LD N+ LYE E A T + + H+ +L + +L
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHIL 227
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/254 (23%), Positives = 104/254 (40%), Gaps = 63/254 (24%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
+++D+ L K +++ +++ I E E ++V+GPSGSGK++ LR + L G+
Sbjct: 2 QMIDVHQL--KKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 59
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616
I +D + + +++ N +N+ V + QR
Sbjct: 60 II---------------IDGINLKAKDTN------LNKVREEVGMVFQR----------- 87
Query: 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK-PSTDDLIKALEDVKLGYI 675
L P +T + K K P KA+E +
Sbjct: 88 -------------------FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME------L 122
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE---ANEAHLYE 732
L ++ D + + LS G+ QR+A AR L +P+I+L DE TSALD + +
Sbjct: 123 LDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 733 QIEAAGITYISVGH 746
Q+ G+T + V H
Sbjct: 183 QLANEGMTMVVVTH 196
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 92/236 (38%), Gaps = 68/236 (28%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
+LSL + E+ +++GP+G+GKT L +AG F+V D DV L
Sbjct: 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAG----------FHVPDSGRILLDGKDVTDL 67
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
++ +Y ++
Sbjct: 68 SPEKHDI-------------------------------AFVYQNYS-------------- 82
Query: 638 LVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQ 697
L P + + LE R ++ D+K+ ++L R N L LS GEQ
Sbjct: 83 LFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDR-NPL--------TLSGGEQ 133
Query: 698 QRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGHRRT 749
QR+A AR L++ P+I+LLDE SALD + + E + + +T + + H +T
Sbjct: 134 QRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT 189
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 65/253 (25%), Positives = 107/253 (42%), Gaps = 67/253 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+++++L I E E + + GPSGSGK++ L + L G++ Y+ + T+D+D
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEV--YIDN-----IKTNDLD 73
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
+ ELT+ + R+ G F QQ
Sbjct: 74 ---------DDELTK-IRRDKIGFVF-------------QQF------------------ 92
Query: 636 AGLVPFLTSAQKLENV------GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
L+P LT+ LENV + + + +ALE +K + R +
Sbjct: 93 -NLIPLLTA---LENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN-----HKP 143
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVG 745
+ LS G+QQR+A AR L + P I+L DE T ALD + + + E G T + V
Sbjct: 144 NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVT 203
Query: 746 HRRTLYDFHKRVL 758
H + F +R++
Sbjct: 204 HDINVARFGERII 216
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/281 (21%), Positives = 111/281 (39%), Gaps = 61/281 (21%)
Query: 484 SKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSL 542
S +G+L+P + L+ +D++ P +++ L+ + + ++GP+GSGK+++
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602
+ L+ GK+ + + D H V
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVG---------------------- 99
Query: 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD 662
Q P + S R+ + Y LT +E + + + D
Sbjct: 100 -QEPLLFGRSFRENIAY---------------------GLTRTPTMEEITAVAMESGAHD 137
Query: 663 LIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
I GY DT E + L++G++Q +A AR L+ KP++++LD +TSA
Sbjct: 138 FISGFPQ---GY--------DTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSA 186
Query: 722 LDEANEAH----LYEQIEAAGITYISVGHRRTLYDFHKRVL 758
LD N+ LYE E A T + + + +L + +L
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHIL 227
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 67/238 (28%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
T V L+L I + E L+++GPSG GKT+ LR +AGL G+I Y DR D
Sbjct: 26 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI--YFGDR--------D 75
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
V L +N+ SM S V+ P+M ++ + + +P
Sbjct: 76 VTYLPPKDRNI------SMVFQSYAVW-----PHM---TVYENIAFPLKI---------- 111
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSVL 692
+K K D ++ A E +++ +L R + + L
Sbjct: 112 -------------------KKFPKDEIDKRVRWAAELLQIEELLNR---------YPAQL 143
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDE----ANEAHLYEQIEAAGITYISVGH 746
S G++QR+A AR ++ +P ++L+DE S LD A A + + + +T I V H
Sbjct: 144 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 102/238 (42%), Gaps = 67/238 (28%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
T V L+L I + E L+++GPSG GKT+ LR +AGL G+I Y DR D
Sbjct: 25 TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI--YFGDR--------D 74
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
V L +N+ SM S V+ P+M ++ + + +P
Sbjct: 75 VTYLPPKDRNI------SMVFQSYAVW-----PHM---TVYENIAFPLKI---------- 110
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSVL 692
+K K D ++ A E +++ +L R + + L
Sbjct: 111 -------------------KKFPKDEIDKRVRWAAELLQIEELLNR---------YPAQL 142
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDE----ANEAHLYEQIEAAGITYISVGH 746
S G++QR+A AR ++ +P ++L+DE S LD A A + + + +T I V H
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 110/281 (39%), Gaps = 61/281 (21%)
Query: 484 SKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSL 542
S +G+L+P + L+ +D++ P +++ L+ + + ++GP+GSGK+++
Sbjct: 2 SPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTV 61
Query: 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602
+ L+ GK+ + + D H V
Sbjct: 62 AALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVG---------------------- 99
Query: 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD 662
Q P + S R+ + Y LT +E + + + D
Sbjct: 100 -QEPLLFGRSFRENIAY---------------------GLTRTPTMEEITAVAMESGAHD 137
Query: 663 LIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
I GY DT E + LS G++Q +A AR L+ KP++++LD +TSA
Sbjct: 138 FISGFPQ---GY--------DTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
Query: 722 LDEANEAH----LYEQIEAAGITYISVGHRRTLYDFHKRVL 758
LD N+ LYE E A T + + + +L + +L
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHIL 227
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 107/244 (43%), Gaps = 69/244 (28%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
K +++D++ I + + ++GP+GSGKT+++ + + RG+I
Sbjct: 367 KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQIL------------- 413
Query: 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY--PTWT-EEVKP 628
VD +++ ++ RS R+S G+ Q + ++++ L Y P T EE+K
Sbjct: 414 --VDGIDIR------KIKRSSLRSSIGIVL--QDTILFSTTVKENLKYGNPGATDEEIKE 463
Query: 629 ASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-E 687
A+ S D IK L + GY +T +
Sbjct: 464 AAKLTHS-------------------------DHFIKHLPE---GY--------ETVLTD 487
Query: 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE----AHLYEQIEAAGITYIS 743
LS G++Q LA R L+ P+I++LDE+TS +D E A +++ +E G T I
Sbjct: 488 NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKTSII 545
Query: 744 VGHR 747
+ HR
Sbjct: 546 IAHR 549
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570
+ T VR++SL + + E ++++GPSG GKT+ LR +AGL RG+I Y+ D+ D
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI--YIGDKLVADPE 71
Query: 571 TS 572
Sbjct: 72 KG 73
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGH 746
LS G++QR+A R ++ KPQ+ L+DE S LD + +++ G+T I V H
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTH 198
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 100/243 (41%), Gaps = 66/243 (27%)
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570
K + ++++ I E ++GPSG+GKT+ +R +AGL G++ Y DR
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--YFDDRLVA--- 70
Query: 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS 630
S G +P + +++ TW
Sbjct: 71 -------------------------SNGKLIVPPEDRKI------GMVFQTWA------- 92
Query: 631 DAAKSAGLVPFLTSAQKLENVG--RKSSKPSTDDLIKALEDV-KLGYILPRLNSLDTTYE 687
L P LT+ EN+ + K S +++ K +E+V K+ I LN
Sbjct: 93 -------LYPNLTA---FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN------H 136
Query: 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD----EANEAHLYEQIEAAGITYIS 743
+ LS G+QQR+A AR L+ P ++LLDE S LD ++ A + E G+T +
Sbjct: 137 FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 744 VGH 746
V H
Sbjct: 197 VSH 199
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 93/382 (24%)
Query: 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSG------KIEFGVIN 416
+ FR A E+L R +IS+ +L F I I+ ++A ++F G ++E G
Sbjct: 226 ENFRKANESLRRSIISAFSLIVF--ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIG--- 280
Query: 417 QSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPL-EKICLTY 475
S+ A+ + L I++ I I R S+S+K + E L EK +
Sbjct: 281 -SIMAYTNYLMQ---IMFSLMMIGNILNFIVR--------ASASAKRVLEVLNEKPAI-- 326
Query: 476 CSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPS 535
+ + AL+ + + E++ + + ++ ++ + + V+G +
Sbjct: 327 --------EEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGET 378
Query: 536 GSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595
GSGK++L+ + L RG++ +VD L+V + + ++
Sbjct: 379 GSGKSTLMNLIPRLIDPERGRV---------------EVDELDVRTVKL---------KD 414
Query: 596 SRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654
RG + +PQ + G++++ L W E DA + A K+ +
Sbjct: 415 LRGHISAVPQETVLFSGTIKENL---KWGRE-----DATDDE-----IVEAAKIAQI--- 458
Query: 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSV-LSLGEQQRLAFARLLLSKPQIV 713
D I +L + GY D+ E S G++QRL+ AR L+ KP+++
Sbjct: 459 ------HDFIISLPE---GY--------DSRVERGGRNFSGGQKQRLSIARALVKKPKVL 501
Query: 714 LLDESTSALDEANEAHLYEQIE 735
+LD+ TS++D E + + ++
Sbjct: 502 ILDDCTSSVDPITEKRILDGLK 523
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 90/226 (39%), Gaps = 71/226 (31%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
+ L+ D+SL I E + ++GP+G+GK++LLR + G S G+
Sbjct: 23 QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLL----------- 71
Query: 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631
QN+N +++ R +R V R Y +L +P EV
Sbjct: 72 ---------GQNLNSWQPKALAR-TRAVM----RQY-------SELAFPFSVSEV----- 105
Query: 632 AAKSAGLVPFLTSA--QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
G P+ S Q L+ V + TD L A D +
Sbjct: 106 --IQMGRAPYGGSQDRQALQQVMAQ-----TDCLALAQRDYR------------------ 140
Query: 690 SVLSLGEQQRLAFARLLLS------KPQIVLLDESTSALDEANEAH 729
VLS GEQQR+ AR+L P+ + LDE TSALD ++ H
Sbjct: 141 -VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQH 185
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA----G 738
D + S LS G++QR+A AR L S P+++L DE+TSALD A + E ++ G
Sbjct: 132 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 739 ITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESL 782
+T + + H D KR+ V N E I+Q+++
Sbjct: 192 LTILLITHE---MDVVKRICDCVAVISNG-------ELIEQDTV 225
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
LS GE+QR+A AR LL P+IV+ DE+TS+LD E + +E T I + HR
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 102/250 (40%), Gaps = 58/250 (23%)
Query: 487 NGALSPEKSQKLLDIEDLTLKTPTSKATLV-RDLSLVINEKEHLLVMGPSGSGKTSLLRA 545
+G L+P + L+ +D++ P LV + L+ + E ++GP+GSGK+++
Sbjct: 3 SGLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAAL 62
Query: 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605
+ L+ G++ K + + R ++R V + Q
Sbjct: 63 LQNLYQPTGGQLLLDGKPLPQYE--------------------HRYLHRQ---VAAVGQE 99
Query: 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665
P + SL++ + Y LT +E + + K I
Sbjct: 100 PQVFGRSLQENIAY---------------------GLTQKPTMEEITAAAVKSGAHSFIS 138
Query: 666 ALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE 724
L GY DT E S LS G++Q +A AR L+ KP +++LD++TSALD
Sbjct: 139 GLPQ---GY--------DTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD- 186
Query: 725 ANEAHLYEQI 734
AN EQ+
Sbjct: 187 ANSQLQVEQL 196
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISV 744
E + LS G++QR+A AR L++ P+I++ DE+TSALD +E + + G T I +
Sbjct: 137 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 196
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
HR + R++ + + Q K + ESLY
Sbjct: 197 AHRLSTVKNADRII-VMEKGKIVEQGKHKELLSEPESLY 234
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISV 744
E + LS G++QR+A AR L++ P+I++ DE+TSALD +E + + G T I +
Sbjct: 135 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 194
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
HR + R++ + + Q K + ESLY
Sbjct: 195 AHRLSTVKNADRII-VMEKGKIVEQGKHKELLSEPESLY 232
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISV 744
E + LS G++QR+A AR L++ P+I++ DE+TSALD +E + + G T I +
Sbjct: 141 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 200
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
HR + R++ + + Q K + ESLY
Sbjct: 201 AHRLSTVKNADRII-VMEKGKIVEQGKHKELLSEPESLY 238
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISV 744
E + LS G++QR+A AR L++ P+I++ DE+TSALD +E + + G T I +
Sbjct: 137 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 196
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
HR + R++ + + Q K + ESLY
Sbjct: 197 AHRLSTVKNADRII-VMEKGKIVEQGKHKELLSEPESLY 234
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT 749
S LS G + +LA AR +L I+LLDE T+ LD N A L + GIT I++ H
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 606
Query: 750 LYD 752
D
Sbjct: 607 FLD 609
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 49/267 (18%), Positives = 108/267 (40%), Gaps = 37/267 (13%)
Query: 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553
K + ++ + ++ + P + + D++ + + V+GP+G+GK++L+ + G
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726
Query: 554 RGKI-------TFYVKDR--EETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR------- 597
G++ Y+K ++H S + + GE +M+R +R
Sbjct: 727 SGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDA 786
Query: 598 ----GVFFLPQRPYMVLGSLRQQLIYPTWTEEVK---PASDAAKSAGLVPFLTSAQ---- 646
+F + P + G ++ T+ E + KS VP ++
Sbjct: 787 EAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIP 846
Query: 647 KLENVGRKSSKPSTDDLIKAL----------EDVKLGYILPRLNSLDTTYEWSSVLSLGE 696
+ E V S + D+ +AL ++++ + L+ ++ LS G+
Sbjct: 847 RGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906
Query: 697 QQRLAFARLLLSKPQIVLLDESTSALD 723
+ +L A +P +++LDE T+ LD
Sbjct: 907 KVKLVLAAGTWQRPHLIVLDEPTNYLD 933
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 108/257 (42%), Gaps = 56/257 (21%)
Query: 472 CLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLV 531
C T + T + NG E+ +D++D+T + + +S I + + + +
Sbjct: 315 CQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVAL 374
Query: 532 MGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591
+G SGSGK+++ A L++ FY DVDS S ++G R
Sbjct: 375 VGRSGSGKSTI----ANLFT------RFY------------DVDS---GSICLDGHDVRD 409
Query: 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651
+ R + L S L T + A++ + +++E
Sbjct: 410 YKLTNL-------RRHFALVSQNVHLFNDTIANNIAYAAEGEYTR---------EQIEQA 453
Query: 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKP 710
R++ ++ +E++ G LDT E + LS G++QR+A AR LL
Sbjct: 454 ARQAHA------MEFIENMPQG--------LDTVIGENGTSLSGGQRQRVAIARALLRDA 499
Query: 711 QIVLLDESTSALDEANE 727
+++LDE+TSALD +E
Sbjct: 500 PVLILDEATSALDTESE 516
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT 749
S LS G + +LA AR +L I+LLDE T+ LD N A L + GIT I++ H
Sbjct: 547 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 606
Query: 750 LYD 752
D
Sbjct: 607 FLD 609
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/55 (20%), Positives = 30/55 (54%)
Query: 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
K + ++ + + + P + + D++ + + V+GP+G+GK++L+ + G
Sbjct: 667 KQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 721
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT 749
S LS G + +LA AR +L I+LLDE T+ LD N A L + GIT I++ H
Sbjct: 541 SALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 600
Query: 750 LYD 752
D
Sbjct: 601 FLD 603
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/55 (20%), Positives = 30/55 (54%)
Query: 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
K + ++ + + + P + + D++ + + V+GP+G+GK++L+ + G
Sbjct: 661 KQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTG 715
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 65/248 (26%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
++RD+S + GPSG GK+++ + + G+IT D D
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI--------DGQPIDN 68
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYP---TWTEE-VKPAS 630
SLE N S+ + F+ Q ++ G++R+ L Y +T+E +
Sbjct: 69 ISLE--------------NWRSQ-IGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVL 113
Query: 631 DAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
D A + V + E VG + K
Sbjct: 114 DLAFARSFVENMPDQLNTE-VGERGVK--------------------------------- 139
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHR- 747
+S G++QRLA AR L P+I++LDE+T++LD +E+ + + +++ G T + + HR
Sbjct: 140 -ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRL 198
Query: 748 RTLYDFHK 755
T+ D K
Sbjct: 199 STIVDADK 206
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA----G 738
D + S LS G++QR+A AR L S P+++L D++TSALD A + E ++ G
Sbjct: 155 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 739 ITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESL 782
+T + + H D KR+ V N E I+Q+++
Sbjct: 215 LTILLITHE---MDVVKRICDCVAVISNG-------ELIEQDTV 248
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 66/243 (27%)
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570
K + ++++ I E ++GPSG+GKT+ +R +AGL G++ Y DR
Sbjct: 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL--YFDDRLVA--- 70
Query: 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS 630
S G +P + +++ TW
Sbjct: 71 -------------------------SNGKLIVPPEDRKI------GMVFQTWA------- 92
Query: 631 DAAKSAGLVPFLTSAQKLENVG--RKSSKPSTDDLIKALEDV-KLGYILPRLNSLDTTYE 687
L P LT+ EN+ + K S +++ K +E+V K+ I LN
Sbjct: 93 -------LYPNLTA---FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN------H 136
Query: 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD----EANEAHLYEQIEAAGITYIS 743
+ LS +QQR+A AR L+ P ++LLDE S LD ++ A + E G+T +
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 744 VGH 746
V H
Sbjct: 197 VSH 199
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 14/104 (13%)
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA----G 738
D + S LS G++QR+A AR L S P+++L D++TSALD A + E ++ G
Sbjct: 155 DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 739 ITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESL 782
+T + + H D KR+ V N E I+Q+++
Sbjct: 215 LTILLITHE---XDVVKRICDCVAVISNG-------ELIEQDTV 248
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISV 744
E + LS G++QR+A AR L++ P+I++ D++TSALD +E + + G T I +
Sbjct: 141 EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICKGRTVIII 200
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
HR + R++ + + Q K + ESLY
Sbjct: 201 AHRLSTVKNADRII-VMEKGKIVEQGKHKELLSEPESLY 238
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 508 TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
TP K L ++SLVINE E LLV G +GSGK++LL+ +AGL G + +
Sbjct: 16 TPLEKKAL-ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGH 746
LS GE++R+A A +++ +P I++LDE LD + L +E G T I + H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 508 TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
TP K L ++SLVINE E LLV G +GSGK++LL+ +AGL G + +
Sbjct: 18 TPLEKKAL-ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 68
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGH 746
LS GE++R+A A +++ +P I++LDE LD + L +E G T I + H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 198
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 121/302 (40%), Gaps = 69/302 (22%)
Query: 440 SAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKI-------------CLTYCSVKSFPTSKC 486
++F +V+D L + SS L PL+ + C T ++ K
Sbjct: 270 ASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329
Query: 487 NGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
G +++ L+ ++T P + +R+++L I + + ++G SGSGK+++ +
Sbjct: 330 EGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
Query: 547 AGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606
+ G I D H D+ E T + RN V + Q
Sbjct: 390 TRFYDIDEGHILM--------DGH--DLR-----------EYTLASLRNQ--VALVSQNV 426
Query: 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA 666
++ ++ + Y TEE S +++E R + D I
Sbjct: 427 HLFNDTVANNIAYAR-TEEY-----------------SREQIEEAARMAYAM---DFINK 465
Query: 667 LEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
++ N LDT E +LS G++QR+A AR LL I++LDE+TSALD
Sbjct: 466 MD-----------NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
Query: 726 NE 727
+E
Sbjct: 515 SE 516
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 680 NSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727
N LDT E +LS G++QR+A AR LL I++LDE+TSALD +E
Sbjct: 468 NGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/140 (20%), Positives = 58/140 (41%), Gaps = 13/140 (9%)
Query: 440 SAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKI-------------CLTYCSVKSFPTSKC 486
++F +V+D L + SS L PL+ + C T ++ K
Sbjct: 270 ASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKD 329
Query: 487 NGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
G E++ ++ ++T P +R+++L I + + ++G SGSGK+++ +
Sbjct: 330 EGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 389
Query: 547 AGLWSDGRGKITFYVKDREE 566
+ G+I D E
Sbjct: 390 TRFYDIDEGEILMDGHDLRE 409
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 48/232 (20%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
+S+ +N+ + L++GP+GSGK++L+ + G G++ F KD
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI-------------- 71
Query: 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGL 638
N E + F PQ P + L LI E+ P S
Sbjct: 72 -----TNKEPAELYHYGIVRTFQTPQ-PLKEMTVLENLLI-----GEICPGESPLNSLFY 120
Query: 639 VPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQ 698
++ +++ + K LE +KL ++ R + LS G+ +
Sbjct: 121 KKWIPKEEEM-----------VEKAFKILEFLKLSHLYDRK---------AGELSGGQMK 160
Query: 699 RLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVGHR 747
+ R L++ P+++++DE + + ++ +++A GIT++ + HR
Sbjct: 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISV 744
E + LS G++QR+A AR L++ P+I++ DE+TSALD +E + + G T I +
Sbjct: 135 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 194
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
R + R++ + + Q K + ESLY
Sbjct: 195 AARLSTVKNADRII-VMEKGKIVEQGKHKELLSEPESLY 232
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISV 744
E + LS G++QR+A AR L++ P+I++ DE+TSALD +E + + G T I +
Sbjct: 141 EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 200
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
R + R++ + + Q K + ESLY
Sbjct: 201 AARLSTVKNADRII-VMEKGKIVEQGKHKELLSEPESLY 238
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/209 (22%), Positives = 84/209 (40%), Gaps = 63/209 (30%)
Query: 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMN 585
+++ +++GP+G+GK+ L +AG+ RG++ +N
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV-------------------------RLN 58
Query: 586 GELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645
G + RG+ F+PQ D A L + A
Sbjct: 59 GADITPLPPERRGIGFVPQ--------------------------DYALFPHLSVYRNIA 92
Query: 646 QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARL 705
L NV R ++ E + + ++L R + LS GE+QR+A AR
Sbjct: 93 YGLRNVERVERDRRVREMA---EKLGIAHLLDRK---------PARLSGGERQRVALARA 140
Query: 706 LLSKPQIVLLDESTSALDEANEAHLYEQI 734
L+ +P+++LLDE SA+D + L E++
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEEL 169
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 48/232 (20%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
+S+ +N+ + L++GP+GSGK++L+ + G G++ F KD
Sbjct: 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI-------------- 71
Query: 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGL 638
N E + F PQ P + L LI E+ P S
Sbjct: 72 -----TNKEPAELYHYGIVRTFQTPQ-PLKEMTVLENLLI-----GEINPGESPLNSLFY 120
Query: 639 VPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQ 698
++ +++ + K LE +KL ++ R + LS G+ +
Sbjct: 121 KKWIPKEEEM-----------VEKAFKILEFLKLSHLYDRK---------AGELSGGQMK 160
Query: 699 RLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVGHR 747
+ R L++ P+++++D+ + + ++ +++A GIT++ + HR
Sbjct: 161 LVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETD 568
A VR +S I E E + ++GPSGSGKT++LR +AGL +G + ++ + TD
Sbjct: 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV--WIGGKRVTD 81
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQR+A AR L +PQ++L DE +A+D
Sbjct: 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 10/62 (16%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD-------EANEAHLYEQIEAAGITYISV 744
LS G+QQR+A AR L+ +P+++L DE S LD A HL +++ GIT + V
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL---GITSVYV 190
Query: 745 GH 746
H
Sbjct: 191 TH 192
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
I + LK K V +S + + E + ++GPSG GKT+ L +AG++ G+I F
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 48/232 (20%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
+S+ + + + L++GP+GSGK++L+ + G G++ F KD
Sbjct: 26 VSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI-------------- 71
Query: 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGL 638
N E + F PQ P + L LI E+ P S
Sbjct: 72 -----TNKEPAELYHYGIVRTFQTPQ-PLKEMTVLENLLI-----GEINPGESPLNSLFY 120
Query: 639 VPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQ 698
++ +++ + K LE +KL ++ R + LS G+ +
Sbjct: 121 KKWIPKEEEM-----------VEKAFKILEFLKLSHLYDRK---------AGELSGGQMK 160
Query: 699 RLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVGHR 747
+ R L++ P+++++DE + + ++ +++A GIT++ + HR
Sbjct: 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHR 212
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 17/96 (17%)
Query: 640 PFLTSAQKLENVGRKS-----SKPSTDDL---IKALEDVKLGYILPRLNSLDTTYEWSSV 691
PF S + +GR + +KP + D ++AL+ + L ++ R E++S
Sbjct: 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR--------EFTS- 128
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727
LS G++Q + AR + S+ +++LLDE TSALD AN+
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
L + L+ +N+ + L V+G +G GK++LL + G+ +GKI Y
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY 65
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDE---ANEAHLYEQIEAAGITYISVGH 746
LS G+QQR++ AR L +P ++L DE TSALD + +Q+ G T + V H
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 211
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 60/221 (27%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
++ + L + + + ++G +G+GKT+ L A+AGL +GKI F
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF---------------- 65
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
N Q++ + +NR G+ +P+ + I+P T
Sbjct: 66 ----NGQDITNKPAHVINR--XGIALVPE----------GRRIFPELT------------ 97
Query: 636 AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSL 694
EN+ + + IK D++ + + PRL + + LS
Sbjct: 98 -----------VYENLXXGAYNRKDKEGIK--RDLEWIFSLFPRLK--ERLKQLGGTLSG 142
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
GEQQ LA R L S+P+++ DE + L + ++E I+
Sbjct: 143 GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQ 183
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 61/227 (26%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+ ++DLT K ++ ++S I+ + + ++G +GSGK++LL A L + G+I
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEI- 77
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+D + +S +T R + GV +PQ+ ++ G+ R+ L
Sbjct: 78 --------------QIDGVSWDS------ITLEQWRKAFGV--IPQKVFIFSGTFRKNL- 114
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
++ S ++ K ++V L ++ +
Sbjct: 115 ----------------------------------DPNAAHSDQEIWKVADEVGLRSVIEQ 140
Query: 679 L-NSLD-TTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LD + VLS G +Q + AR +LSK +I+LLDE ++ LD
Sbjct: 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISV 744
+ LS G+++R+A A +L+ +P++++LDE T+ LD + L E + GIT I
Sbjct: 141 THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIA 200
Query: 745 GHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNLSRR 788
H + + + + + Q N K F ++E + ++ R
Sbjct: 201 THDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLR 244
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVK 562
++ D+SL ++ E L ++G SG GKT+LLR +AG G+I+ K
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567
+D++L I+E E ++ +GPSG GK++LLR +AGL + G + K +T
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT 70
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
LS G++QR+A R L+++P + LLD+ S LD A + +I + G T I V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567
+D++L I+E E ++ +GPSG GK++LLR +AGL + G + K +T
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT 70
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
LS G++QR+A R L+++P + LLDE S LD A + +I + G T I V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567
+D++L I+E E ++ +GPSG GK++LLR +AGL + G + K +T
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT 70
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
LS G++QR+A R L+++P + LLDE S LD A + +I + G T I V H
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTH 192
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS GE+QR+ AR L +PQ+++LDE + LD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
RLN + LS G +QR+ A LL P +++LDE TSALD +AH+ +
Sbjct: 141 RLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRR 748
LS G++QRLA A +L + + LDE S LD ++ +++ +E+ G I V H
Sbjct: 141 LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHEL 200
Query: 749 TLYDFHKRVLRIS--TVDQNSSQSNWKLEFIDQE 780
D +L IS T+D S W+ EF+++E
Sbjct: 201 EYLDDMDFILHISNGTIDFCGS---WE-EFVERE 230
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 18/20 (90%)
Query: 530 LVMGPSGSGKTSLLRAMAGL 549
+V+G +GSGKT+LL+ +AGL
Sbjct: 41 VVVGKNGSGKTTLLKILAGL 60
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 29/35 (82%), Gaps = 1/35 (2%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550
+ +++L +N E ++++GP+GSGKT+LLRA++GL
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 36.2 bits (82), Expect = 0.073, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 506 LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563
L+ K +++ +S I E E ++GP+G+GKT+ LR ++ L G +T + K+
Sbjct: 21 LRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKN 78
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 35.8 bits (81), Expect = 0.10, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+++T + LS + E L ++GP+G+GK++LL MAG+ S G+G I F
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQF 58
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+++T + LS + E L ++GP+G+GK++LL MAG+ S G+G I F
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKGSIQF 58
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 489 ALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
L P S +L I+DL + ++R LSL ++ E +MGP+GSGK++L +AG
Sbjct: 12 GLVPRGSH-MLSIKDLHVSV--EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
LS G++QR++ AR + S I L D+ SA+D H++E +
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 35.0 bits (79), Expect = 0.17, Method: Composition-based stats.
Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 57/227 (25%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L+I DL T+++ ++LV+ + E +MGP+G+GK++L + +AG
Sbjct: 4 LEIRDLW--ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG---------- 51
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
D E +T + + ++ +N+ EL+ R +G+F Q P V G +
Sbjct: 52 ----DPE----YTVERGEILLDGENIL-ELSPD-ERARKGLFLAFQYPVEVPGVTIANFL 101
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE--DVKLGYIL 676
+ + + G+ F T + KALE D Y+
Sbjct: 102 ------RLALQAKLGREVGVAEFWTKVK------------------KALELLDWDESYLS 137
Query: 677 PRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LN S GE++R +LL+ +P +LDE+ S LD
Sbjct: 138 RYLN---------EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
+L I+DL + ++R LSL ++ E +MGP+GSGK++L +AG
Sbjct: 1 MLSIKDLHVSV--EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG 49
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 69/218 (31%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
+++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI----------------- 95
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
++S + F Q +++ G++++ +I+ +E + S
Sbjct: 96 -------------------KHSGRISFCSQFSWIMPGTIKENIIFGVSYDEYRYRS---- 132
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSL 694
+ + Q E++ + + K +++ LG E LS
Sbjct: 133 ------VIKACQLEEDISKFAEK----------DNIVLG-------------EGGITLSE 163
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
G+Q +++ AR + + LLD LD E ++E
Sbjct: 164 GQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 69/232 (29%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
+E++T +++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 21 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--- 77
Query: 561 VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYP 620
++S + F Q +++ G++++ +I+
Sbjct: 78 ---------------------------------KHSGRISFCSQFSWIMPGTIKENIIFG 104
Query: 621 TWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680
+E + S + + Q E++ + + K +++ LG
Sbjct: 105 VSYDEYRYRS----------VIKACQLEEDISKFAEK----------DNIVLG------- 137
Query: 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
E LS G++ R++ AR + + LLD LD E ++E
Sbjct: 138 ------EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 183
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/232 (18%), Positives = 87/232 (37%), Gaps = 69/232 (29%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
+E++T +++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--- 65
Query: 561 VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYP 620
++S + F Q +++ G++++ +I+
Sbjct: 66 ---------------------------------KHSGRISFCSQFSWIMPGTIKENIIFG 92
Query: 621 TWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680
+E + S + + Q E++ + + K +++ LG
Sbjct: 93 VSYDEYRYRS----------VIKACQLEEDISKFAEK----------DNIVLG------- 125
Query: 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
E LS G++ R++ AR + + LLD LD E ++E
Sbjct: 126 ------EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 171
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF---------YVKDREETDAHT-- 571
I + E + ++GP+G GKT+ ++ +AG+ GK+ + Y+K E +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 424
Query: 572 SDVDSLEVNSQNMNGELTRSMN 593
S +DS ++NS EL + +
Sbjct: 425 SKIDSSKLNSNFYKTELLKPLG 446
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS GE QR+A A LL I LLDE ++ LD
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLD 489
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD---EANEAHLYEQIEAAGITYISVGHRR 748
LS GE QR+A A LL K DE +S LD A + ++ G + V H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 749 TLYDFHKRVLRI 760
+ D+ V+ +
Sbjct: 275 AVLDYLSDVIHV 286
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF---------YVKDREETDAHT-- 571
I + E + ++GP+G GKT+ ++ +AG+ GK+ + Y+K E +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELL 438
Query: 572 SDVDSLEVNSQNMNGELTRSMN 593
S +DS ++NS EL + +
Sbjct: 439 SKIDSSKLNSNFYKTELLKPLG 460
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS GE QR+A A LL I LLDE ++ LD
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLD 503
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD---EANEAHLYEQIEAAGITYISVGHRR 748
LS GE QR+A A LL K DE +S LD A + ++ G + V H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 749 TLYDFHKRVLRI 760
+ D+ V+ +
Sbjct: 289 AVLDYLSDVIHV 300
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Query: 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF---------YVKDREETDAHT-- 571
I + E + ++GP+G GKT+ ++ +AG+ GKI + Y+K E +
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELL 368
Query: 572 SDVDSLEVNSQNMNGELTRSMN 593
S +D+ ++NS EL + +
Sbjct: 369 SKIDASKLNSNFYKTELLKPLG 390
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 57/242 (23%)
Query: 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNS 581
V+ E + ++GP+G+GK++ ++ +AG + +L ++
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQL-----------------------IPNLCGDN 79
Query: 582 QNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPF 641
+ +G + R+ N +F L+ I P VKP + L+P
Sbjct: 80 DSWDG-VIRAFRGNELQNYFE---------KLKNGEIRPV----VKP-----QYVDLIPK 120
Query: 642 LTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLA 701
+ +E + + ++++KALE L +L R LS GE QR+A
Sbjct: 121 AVKGKVIELLKKADETGKLEEVVKALE---LENVLER---------EIQHLSGGELQRVA 168
Query: 702 FARLLLSKPQIVLLDESTSALD---EANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVL 758
A LL DE +S LD N A ++ G + + V H + D+ ++
Sbjct: 169 IAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDII 228
Query: 759 RI 760
+
Sbjct: 229 HV 230
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS GE QR+A A LL I LLDE ++ LD
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLD 433
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 506 LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
L TP +++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 49 LGTP-----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 506 LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
L TP +++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 49 LGTP-----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 506 LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
L TP +++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 49 LGTP-----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+E++T +++D++ I + L V G +G+GKTSLL + G GKI
Sbjct: 9 MENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+++T + LS + E L ++GP+G+GK++LL AG + G+G I F
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX-TSGKGSIQF 58
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 45 KQHKSPSLLVFAANVMALPMPSRRRRNFKNEQENLK 80
KQ KSP LLV+AA +A +PSR + Q +LK
Sbjct: 39 KQGKSPQLLVYAATNLAAGVPSRFSGSGSGTQYSLK 74
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+++T + LS + E L ++GP+G+GK++LL AG + G+G I F
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGX-TSGKGSIQF 58
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 57/269 (21%), Positives = 109/269 (40%), Gaps = 76/269 (28%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L+I DL++ K L R +++ I + + GP+G GKT+LL+ ++ +G+I
Sbjct: 11 LEIRDLSVGY--DKPVLER-ITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNG-ELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
+ NG +T+ + +FFLP+ ++
Sbjct: 68 Y-------------------------NGVPITKVKGK----IFFLPE-----------EI 87
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
I P + + +L + L V K + ++++ ALE V++ +
Sbjct: 88 IVP-------------RKISVEDYLKAVASLYGV-----KVNKNEIMDALESVEVLDLKK 129
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE----AHLYEQ 733
+L L S G +R+ A LL +I +LD+ A+DE ++ + E
Sbjct: 130 KLGEL----------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179
Query: 734 IEAAGITYISVGHRRTLYDFHKRVLRIST 762
++ GI IS + D ++ + + ST
Sbjct: 180 LKEKGIVIISSREELSYCDVNENLHKYST 208
>pdb|3CXD|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With Its Epitope Peptide
pdb|3DSF|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With W43a Mutated Epitope Peptide
Length = 213
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 45 KQHKSPSLLVFAANVMALPMPSRRRRNFKNEQENLK 80
KQ KSP LLV+AA +A +PSR + Q +LK
Sbjct: 39 KQGKSPQLLVYAATNLADGVPSRFSGSGSGTQFSLK 74
>pdb|1BBJ|L Chain L, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|A Chain A, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 211
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 45 KQHKSPSLLVFAANVMALPMPSRRRRNFKNEQENLK 80
KQ KSP LLV+AA +A +PSR + Q +LK
Sbjct: 39 KQGKSPQLLVYAATNLADGVPSRFSGSGSGTQYSLK 74
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
++++++L I + E L + G +GSGKTSLL + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
++++++L I + E L + G +GSGKTSLL + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
++++++L I + E L + G +GSGKTSLL + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
++++++L I + E L + G +GSGKTSLL + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
++ E L++MG +G+GKT+L++ +AG G+
Sbjct: 376 SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
++++++L I + E L + G +GSGKTSLL + G
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG 86
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547
+KL ++ +L L +P ATL I+ + +L+ GP G+GKT RA+A
Sbjct: 219 EKLREVVELPLLSPERFATLG------IDPPKGILLYGPPGTGKTLCARAVA 264
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTS--LLRAMAGLWSDGRGK 556
+++ T TP K + +I EK L+ +GSGKT+ LL ++ ++SDG G+
Sbjct: 30 IELTRYTRPTPVQKHAIP-----IIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGE 84
Query: 557 ITFYVKD 563
+K+
Sbjct: 85 ALRAMKE 91
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550
N+K H+L++G G+GK+ L +AMA L
Sbjct: 58 NQKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|3RKD|L Chain L, Hepatitis E Virus E2s Domain (Genotype I) In Complex
With A Neutralizing Antibody
pdb|3RKD|C Chain C, Hepatitis E Virus E2s Domain (Genotype I) In Complex
With A Neutralizing Antibody
Length = 214
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 45 KQHKSPSLLVFAANVMALPMPSRRRRNFKNEQENLK 80
KQ KSP LLV++A +A +PSR + Q +LK
Sbjct: 39 KQGKSPQLLVYSATNLAEGVPSRFSGSGSGTQYSLK 74
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 529 LLVMGPSGSGKTSLLRAMAG 548
+L++GP G+GKT L RA+AG
Sbjct: 52 ILLVGPPGTGKTLLARAVAG 71
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 223 LRWRSWMTKYYM---ERYLKDQTFYKIQSQSIIDNPDQRI 259
+ WR++ + ER+ K +T IQS S++D PD+ I
Sbjct: 941 VTWRTFTGDFLRRVEERFTKSKTLSLIQSYSLLDKPDEAI 980
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 487 NGALSPEKSQKLL-DIEDLTL----KTPTSKATLVR---DLSLVIN-----EKEHLLVMG 533
N + P++ + +L ++ DL L KT +++ D LV++ E E + ++G
Sbjct: 242 NMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILG 301
Query: 534 PSGSGKTSLLRAMAGLWSDGRGKIT 558
P+G GKT+ R + G + G +T
Sbjct: 302 PNGIGKTTFARILVGEITADEGSVT 326
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRR 748
++LG RLA + L + +++LDE T LDE L +E I V H
Sbjct: 60 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 119
Query: 749 TLYDFHKRVLRISTVDQNS 767
L D V+RIS + +S
Sbjct: 120 ELKDAADHVIRISLENGSS 138
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 29.3 bits (64), Expect = 9.8, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRR 748
++LG RLA + L + +++LDE T LDE L +E I V H
Sbjct: 90 IALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 149
Query: 749 TLYDFHKRVLRISTVDQNS 767
L D V+RIS + +S
Sbjct: 150 ELKDAADHVIRISLENGSS 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,994,326
Number of Sequences: 62578
Number of extensions: 811512
Number of successful extensions: 2867
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2660
Number of HSP's gapped (non-prelim): 221
length of query: 788
length of database: 14,973,337
effective HSP length: 107
effective length of query: 681
effective length of database: 8,277,491
effective search space: 5636971371
effective search space used: 5636971371
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)