Query 040758
Match_columns 788
No_of_seqs 465 out of 2499
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 11:31:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040758.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040758hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 1.5E-85 3.3E-90 743.9 57.7 535 132-765 133-680 (716)
2 COG2274 SunT ABC-type bacterio 100.0 9.7E-76 2.1E-80 688.4 61.4 535 133-766 141-686 (709)
3 KOG0055 Multidrug/pheromone ex 100.0 5.3E-76 1.2E-80 699.2 58.6 538 130-765 648-1202(1228)
4 PRK11174 cysteine/glutathione 100.0 1E-71 2.2E-76 656.6 63.5 528 133-766 9-562 (588)
5 TIGR00958 3a01208 Conjugate Tr 100.0 1.9E-71 4.1E-76 665.7 64.4 535 131-765 146-691 (711)
6 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 1.2E-70 2.7E-75 657.8 64.6 515 157-765 138-662 (686)
7 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.2E-70 2.6E-75 660.5 63.4 539 133-765 141-689 (710)
8 TIGR03375 type_I_sec_LssB type 100.0 2.2E-70 4.8E-75 656.4 63.9 534 133-766 134-678 (694)
9 TIGR01193 bacteriocin_ABC ABC- 100.0 3.1E-70 6.6E-75 656.6 63.0 532 133-765 143-686 (708)
10 COG1132 MdlB ABC-type multidru 100.0 8.3E-70 1.8E-74 637.5 61.8 516 157-765 16-541 (567)
11 PRK11176 lipid transporter ATP 100.0 3.2E-69 6.9E-74 634.7 63.8 536 131-765 10-556 (582)
12 TIGR02868 CydC thiol reductant 100.0 7.1E-69 1.5E-73 624.8 62.4 516 135-748 2-529 (529)
13 PRK11160 cysteine/glutathione 100.0 2.7E-68 5.8E-73 624.8 64.6 529 134-765 4-551 (574)
14 COG4178 ABC-type uncharacteriz 100.0 1.6E-68 3.6E-73 605.1 58.1 546 131-762 23-588 (604)
15 TIGR02203 MsbA_lipidA lipid A 100.0 5E-68 1.1E-72 623.2 63.3 531 135-765 3-545 (571)
16 PTZ00265 multidrug resistance 100.0 2.9E-68 6.2E-73 672.7 62.7 533 133-762 812-1433(1466)
17 TIGR02857 CydD thiol reductant 100.0 1.4E-67 3.1E-72 613.8 63.1 512 157-760 5-529 (529)
18 TIGR01846 type_I_sec_HlyB type 100.0 1.2E-67 2.6E-72 632.6 63.8 532 134-766 127-670 (694)
19 PRK13657 cyclic beta-1,2-gluca 100.0 5.3E-67 1.2E-71 616.2 64.4 532 132-765 5-547 (588)
20 PRK10790 putative multidrug tr 100.0 4.7E-67 1E-71 617.3 63.2 532 131-765 8-552 (592)
21 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-66 3.2E-71 611.4 63.7 535 133-765 5-552 (576)
22 TIGR00954 3a01203 Peroxysomal 100.0 4.7E-66 1E-70 612.6 67.8 571 130-774 75-659 (659)
23 TIGR01192 chvA glucan exporter 100.0 3.1E-66 6.6E-71 608.4 65.4 531 133-765 6-547 (585)
24 TIGR01842 type_I_sec_PrtD type 100.0 8.8E-66 1.9E-70 600.5 63.6 517 156-766 7-532 (544)
25 KOG0055 Multidrug/pheromone ex 100.0 7.9E-68 1.7E-72 629.4 46.6 434 247-765 117-565 (1228)
26 KOG0057 Mitochondrial Fe/S clu 100.0 2.9E-66 6.4E-71 568.7 51.7 522 147-765 22-563 (591)
27 KOG0056 Heavy metal exporter H 100.0 9.8E-69 2.1E-73 575.0 31.4 533 140-765 200-750 (790)
28 PRK10789 putative multidrug tr 100.0 1.5E-64 3.2E-69 592.8 60.9 511 165-765 5-527 (569)
29 KOG0060 Long-chain acyl-CoA tr 100.0 1.5E-65 3.2E-70 564.3 46.9 585 131-782 59-655 (659)
30 COG4988 CydD ABC-type transpor 100.0 1.9E-63 4.1E-68 555.1 62.8 513 160-765 5-532 (559)
31 COG4987 CydC ABC-type transpor 100.0 4.9E-63 1.1E-67 543.1 53.7 529 139-769 6-554 (573)
32 TIGR00957 MRP_assoc_pro multi 100.0 3.4E-62 7.3E-67 623.3 62.4 449 234-765 1036-1497(1522)
33 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.7E-61 3.6E-66 565.3 58.9 525 133-765 4-548 (555)
34 PTZ00265 multidrug resistance 100.0 3.1E-61 6.7E-66 608.8 61.7 545 156-763 61-655 (1466)
35 PTZ00243 ABC transporter; Prov 100.0 6.8E-61 1.5E-65 610.1 64.8 473 235-765 1030-1522(1560)
36 PLN03130 ABC transporter C fam 100.0 6.7E-61 1.5E-65 611.0 63.4 446 234-765 984-1450(1622)
37 COG4618 ArpD ABC-type protease 100.0 3.5E-61 7.6E-66 523.7 49.9 512 157-765 25-549 (580)
38 PLN03232 ABC transporter C fam 100.0 4.7E-60 1E-64 602.9 61.7 449 234-765 981-1447(1495)
39 COG5265 ATM1 ABC-type transpor 100.0 6.4E-61 1.4E-65 511.3 34.5 408 273-765 59-475 (497)
40 PRK10522 multidrug transporter 100.0 4.3E-58 9.4E-63 536.0 59.0 510 136-766 3-528 (547)
41 TIGR01271 CFTR_protein cystic 100.0 2.8E-57 6.1E-62 576.6 63.3 463 234-765 956-1429(1490)
42 PLN03232 ABC transporter C fam 100.0 8.1E-56 1.7E-60 564.1 64.3 496 157-765 303-817 (1495)
43 PLN03130 ABC transporter C fam 100.0 1.6E-55 3.5E-60 561.8 63.3 497 157-765 303-817 (1622)
44 KOG0054 Multidrug resistance-a 100.0 2.4E-56 5.1E-61 543.2 52.7 450 236-765 891-1351(1381)
45 TIGR00957 MRP_assoc_pro multi 100.0 1E-50 2.2E-55 518.0 65.5 503 157-765 319-839 (1522)
46 KOG0064 Peroxisomal long-chain 100.0 1.1E-50 2.5E-55 440.2 41.2 572 133-780 100-695 (728)
47 PTZ00243 ABC transporter; Prov 100.0 1.4E-48 3E-53 497.5 65.3 526 157-765 246-859 (1560)
48 TIGR01271 CFTR_protein cystic 100.0 6.8E-49 1.5E-53 500.0 61.7 520 159-765 84-625 (1490)
49 KOG0054 Multidrug resistance-a 100.0 1.4E-47 3.1E-52 466.6 57.3 497 159-765 205-720 (1381)
50 COG1126 GlnQ ABC-type polar am 100.0 3E-48 6.4E-53 384.6 16.4 208 498-765 2-214 (240)
51 COG1135 AbcC ABC-type metal io 100.0 1.8E-47 4E-52 396.7 14.5 213 498-767 1-222 (339)
52 COG1136 SalX ABC-type antimicr 100.0 1.3E-45 2.8E-50 376.0 19.4 210 499-764 2-219 (226)
53 COG1116 TauB ABC-type nitrate/ 100.0 3.6E-45 7.8E-50 373.0 20.8 199 498-763 3-207 (248)
54 COG1125 OpuBA ABC-type proline 100.0 1.1E-45 2.4E-50 372.8 14.0 207 498-765 1-214 (309)
55 COG1120 FepC ABC-type cobalami 100.0 8E-45 1.7E-49 377.1 18.7 210 498-765 2-217 (258)
56 COG2884 FtsE Predicted ATPase 100.0 8E-45 1.7E-49 352.5 16.1 210 498-765 1-215 (223)
57 COG3638 ABC-type phosphate/pho 100.0 1.1E-44 2.4E-49 363.4 15.5 218 498-765 3-226 (258)
58 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 1.7E-43 3.7E-48 365.4 21.7 206 498-764 4-216 (254)
59 COG3842 PotA ABC-type spermidi 100.0 2.5E-44 5.4E-49 388.8 15.2 204 498-765 5-215 (352)
60 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.8E-43 6E-48 375.7 20.6 209 498-765 2-214 (275)
61 COG3839 MalK ABC-type sugar tr 100.0 1.6E-43 3.6E-48 380.5 18.6 204 498-765 3-212 (338)
62 COG1117 PstB ABC-type phosphat 100.0 5.7E-44 1.2E-48 352.4 11.9 212 498-765 7-226 (253)
63 COG1127 Ttg2A ABC-type transpo 100.0 4.5E-43 9.8E-48 352.7 16.5 212 497-765 7-224 (263)
64 COG1124 DppF ABC-type dipeptid 100.0 1.2E-42 2.6E-47 351.4 18.6 206 498-765 3-220 (252)
65 TIGR02314 ABC_MetN D-methionin 100.0 1.1E-42 2.5E-47 381.1 19.4 211 498-765 1-219 (343)
66 TIGR00960 3a0501s02 Type II (G 100.0 1E-42 2.2E-47 359.2 17.8 210 498-764 1-215 (216)
67 COG1122 CbiO ABC-type cobalt t 100.0 4.8E-42 1E-46 355.8 18.3 208 498-765 3-217 (235)
68 cd03244 ABCC_MRP_domain2 Domai 100.0 1.4E-41 3E-46 351.9 21.4 210 498-765 2-215 (221)
69 cd03252 ABCC_Hemolysin The ABC 100.0 1.3E-41 2.8E-46 355.9 20.8 210 499-765 1-214 (237)
70 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 5.5E-42 1.2E-46 354.2 17.7 209 499-764 1-217 (218)
71 PRK14257 phosphate ABC transpo 100.0 1.2E-41 2.6E-46 372.0 20.0 216 496-765 78-302 (329)
72 COG1118 CysA ABC-type sulfate/ 100.0 7.2E-42 1.6E-46 354.1 16.9 209 498-765 2-216 (345)
73 cd03261 ABC_Org_Solvent_Resist 100.0 1.6E-41 3.5E-46 354.9 18.7 209 499-765 1-215 (235)
74 cd03245 ABCC_bacteriocin_expor 100.0 3.6E-41 7.9E-46 348.5 21.0 211 498-765 2-216 (220)
75 cd03226 ABC_cobalt_CbiO_domain 100.0 2.6E-41 5.7E-46 346.0 19.5 197 500-764 1-203 (205)
76 cd03259 ABC_Carb_Solutes_like 100.0 1.9E-41 4.1E-46 349.0 17.8 203 499-765 1-209 (213)
77 PRK13631 cbiO cobalt transport 100.0 4.5E-41 9.7E-46 366.4 21.7 224 497-765 20-254 (320)
78 PRK11650 ugpC glycerol-3-phosp 100.0 2.6E-41 5.6E-46 373.0 19.7 205 498-765 3-213 (356)
79 TIGR02673 FtsE cell division A 100.0 2.1E-41 4.7E-46 348.7 17.8 209 498-764 1-214 (214)
80 cd03225 ABC_cobalt_CbiO_domain 100.0 1.8E-41 3.9E-46 348.5 17.1 205 500-764 1-211 (211)
81 cd03248 ABCC_TAP TAP, the Tran 100.0 7.6E-41 1.6E-45 347.6 21.4 215 494-764 7-225 (226)
82 cd03254 ABCC_Glucan_exporter_l 100.0 5.4E-41 1.2E-45 349.3 20.3 210 498-765 2-215 (229)
83 PRK10908 cell division protein 100.0 4.5E-41 9.8E-46 348.5 18.9 216 498-771 1-221 (222)
84 TIGR02211 LolD_lipo_ex lipopro 100.0 3.8E-41 8.2E-46 348.6 18.2 210 499-765 2-219 (221)
85 PRK11432 fbpC ferric transport 100.0 4.5E-41 9.9E-46 370.1 19.8 205 497-765 5-215 (351)
86 cd03292 ABC_FtsE_transporter F 100.0 3.1E-41 6.7E-46 347.4 17.3 208 499-764 1-213 (214)
87 COG3840 ThiQ ABC-type thiamine 100.0 4E-41 8.6E-46 324.2 16.6 201 499-765 2-208 (231)
88 PRK13650 cbiO cobalt transport 100.0 5E-41 1.1E-45 360.1 19.1 208 498-765 4-218 (279)
89 cd03251 ABCC_MsbA MsbA is an e 100.0 1E-40 2.2E-45 348.4 20.8 210 499-765 1-214 (234)
90 cd03288 ABCC_SUR2 The SUR doma 100.0 1.7E-40 3.7E-45 351.9 21.7 213 495-765 16-232 (257)
91 PRK13647 cbiO cobalt transport 100.0 6.7E-41 1.5E-45 358.2 18.7 207 498-765 4-216 (274)
92 PRK13637 cbiO cobalt transport 100.0 8.8E-41 1.9E-45 359.5 19.7 209 499-765 3-223 (287)
93 PRK11629 lolD lipoprotein tran 100.0 9.5E-41 2.1E-45 348.7 19.0 211 498-765 5-223 (233)
94 cd03253 ABCC_ATM1_transporter 100.0 1.6E-40 3.5E-45 347.4 20.4 209 499-765 1-213 (236)
95 cd03266 ABC_NatA_sodium_export 100.0 1E-40 2.2E-45 344.7 18.7 207 498-765 1-214 (218)
96 TIGR03265 PhnT2 putative 2-ami 100.0 7.9E-41 1.7E-45 368.7 18.7 204 498-765 4-213 (353)
97 PRK11153 metN DL-methionine tr 100.0 7.3E-41 1.6E-45 368.4 18.4 211 498-765 1-219 (343)
98 cd03296 ABC_CysA_sulfate_impor 100.0 1.8E-40 3.8E-45 347.9 19.9 208 498-765 2-215 (239)
99 PRK13643 cbiO cobalt transport 100.0 1.2E-40 2.6E-45 358.6 19.0 212 498-765 1-222 (288)
100 cd03250 ABCC_MRP_domain1 Domai 100.0 4.5E-40 9.8E-45 336.6 22.2 195 499-764 1-204 (204)
101 cd03263 ABC_subfamily_A The AB 100.0 9.4E-41 2E-45 345.4 17.2 206 499-765 1-210 (220)
102 TIGR02315 ABC_phnC phosphonate 100.0 2E-40 4.3E-45 348.1 20.0 219 498-766 1-225 (243)
103 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.6E-40 3.5E-45 343.9 18.9 201 499-764 1-211 (220)
104 cd03260 ABC_PstB_phosphate_tra 100.0 1.2E-40 2.7E-45 346.3 18.0 209 499-765 1-218 (227)
105 cd03268 ABC_BcrA_bacitracin_re 100.0 1.4E-40 3E-45 341.3 17.9 199 499-765 1-204 (208)
106 cd03219 ABC_Mj1267_LivG_branch 100.0 1.7E-40 3.7E-45 347.2 18.7 216 499-765 1-221 (236)
107 cd03235 ABC_Metallic_Cations A 100.0 1.5E-40 3.3E-45 342.3 17.8 202 500-764 1-209 (213)
108 cd03301 ABC_MalK_N The N-termi 100.0 2E-40 4.4E-45 341.2 18.6 203 499-765 1-209 (213)
109 cd03256 ABC_PhnC_transporter A 100.0 2.3E-40 4.9E-45 347.2 19.3 217 499-765 1-223 (241)
110 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.9E-40 6.4E-45 345.9 20.0 210 499-765 1-215 (238)
111 cd03262 ABC_HisP_GlnQ_permease 100.0 2.3E-40 4.9E-45 340.7 18.6 207 499-764 1-212 (213)
112 cd03369 ABCC_NFT1 Domain 2 of 100.0 6.6E-40 1.4E-44 336.2 21.6 195 497-765 5-201 (207)
113 PRK13646 cbiO cobalt transport 100.0 1.9E-40 4E-45 356.9 18.3 212 498-765 2-224 (286)
114 cd03264 ABC_drug_resistance_li 100.0 2.2E-40 4.9E-45 340.5 18.0 203 499-765 1-207 (211)
115 cd03218 ABC_YhbG The ABC trans 100.0 2.1E-40 4.5E-45 345.6 17.8 206 499-765 1-211 (232)
116 PRK09536 btuD corrinoid ABC tr 100.0 3.6E-40 7.8E-45 367.6 20.8 210 498-765 3-217 (402)
117 PRK14250 phosphate ABC transpo 100.0 5E-40 1.1E-44 345.0 20.8 202 498-765 3-210 (241)
118 cd03246 ABCC_Protease_Secretio 100.0 5E-40 1.1E-44 327.8 19.6 169 499-764 1-172 (173)
119 PRK10584 putative ABC transpor 100.0 3.7E-40 7.9E-45 343.0 19.2 211 498-765 6-224 (228)
120 PRK13651 cobalt transporter AT 100.0 2.7E-40 5.9E-45 358.1 18.9 229 498-765 2-243 (305)
121 TIGR03258 PhnT 2-aminoethylpho 100.0 2.3E-40 4.9E-45 365.7 18.6 205 497-765 4-217 (362)
122 PRK11247 ssuB aliphatic sulfon 100.0 7E-40 1.5E-44 346.8 21.5 196 497-765 11-212 (257)
123 cd03258 ABC_MetN_methionine_tr 100.0 1.9E-40 4.2E-45 346.2 17.0 211 498-765 1-219 (233)
124 PRK10851 sulfate/thiosulfate t 100.0 5.6E-40 1.2E-44 361.9 21.5 208 498-765 2-215 (353)
125 PRK09452 potA putrescine/sperm 100.0 5.7E-40 1.2E-44 363.9 21.5 205 497-765 13-223 (375)
126 PRK13537 nodulation ABC transp 100.0 4.2E-40 9.2E-45 357.1 20.0 206 497-765 6-216 (306)
127 PRK13634 cbiO cobalt transport 100.0 2.9E-40 6.4E-45 356.0 18.6 211 499-765 3-224 (290)
128 cd03224 ABC_TM1139_LivF_branch 100.0 3.8E-40 8.2E-45 341.3 18.6 204 499-765 1-210 (222)
129 PRK11000 maltose/maltodextrin 100.0 3.7E-40 8.1E-45 365.9 19.6 204 498-765 3-212 (369)
130 cd03223 ABCD_peroxisomal_ALDP 100.0 1.3E-39 2.7E-44 322.8 21.1 163 499-763 1-163 (166)
131 PRK13635 cbiO cobalt transport 100.0 4.8E-40 1E-44 352.4 19.5 208 498-765 5-218 (279)
132 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 5.1E-40 1.1E-44 343.8 19.2 205 498-765 1-210 (236)
133 cd03265 ABC_DrrA DrrA is the A 100.0 4.7E-40 1E-44 340.4 18.6 204 499-765 1-210 (220)
134 PRK13632 cbiO cobalt transport 100.0 4.6E-40 9.9E-45 351.3 19.0 208 498-765 7-220 (271)
135 PRK13644 cbiO cobalt transport 100.0 4.5E-40 9.8E-45 351.8 18.9 208 498-765 1-213 (274)
136 cd03290 ABCC_SUR1_N The SUR do 100.0 1.7E-39 3.7E-44 335.7 22.2 209 500-763 2-217 (218)
137 PRK10247 putative ABC transpor 100.0 8.2E-40 1.8E-44 339.9 19.8 201 498-762 7-212 (225)
138 TIGR00972 3a0107s01c2 phosphat 100.0 6.6E-40 1.4E-44 345.3 19.3 213 498-765 1-221 (247)
139 PRK11607 potG putrescine trans 100.0 1.2E-39 2.5E-44 361.9 22.2 206 496-765 17-228 (377)
140 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.4E-40 1.2E-44 344.9 18.1 206 499-765 1-214 (242)
141 cd03269 ABC_putative_ATPase Th 100.0 7.4E-40 1.6E-44 336.4 18.6 201 499-765 1-206 (210)
142 PRK14273 phosphate ABC transpo 100.0 7.8E-40 1.7E-44 346.2 19.3 214 497-765 6-227 (254)
143 PRK13636 cbiO cobalt transport 100.0 6.8E-40 1.5E-44 352.0 18.9 209 498-765 5-220 (283)
144 cd03257 ABC_NikE_OppD_transpor 100.0 1E-39 2.2E-44 339.2 19.5 211 499-765 2-224 (228)
145 PRK11831 putative ABC transpor 100.0 8.3E-40 1.8E-44 348.9 19.0 210 498-765 7-222 (269)
146 PRK09493 glnQ glutamine ABC tr 100.0 9.2E-40 2E-44 342.7 19.0 209 498-765 1-214 (240)
147 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.3E-39 2.9E-44 334.7 19.8 201 499-765 1-207 (211)
148 PRK14242 phosphate transporter 100.0 9.6E-40 2.1E-44 345.2 18.9 213 498-765 6-226 (253)
149 PRK10744 pstB phosphate transp 100.0 1.3E-39 2.8E-44 345.7 20.0 215 496-765 11-233 (260)
150 TIGR01288 nodI ATP-binding ABC 100.0 9.9E-40 2.1E-44 354.1 19.3 205 498-765 4-213 (303)
151 PRK14269 phosphate ABC transpo 100.0 1.8E-39 3.9E-44 341.8 20.3 213 498-766 2-220 (246)
152 PRK14259 phosphate ABC transpo 100.0 2.3E-39 5E-44 345.5 21.2 228 497-782 12-251 (269)
153 TIGR03411 urea_trans_UrtD urea 100.0 2E-39 4.3E-44 340.5 20.4 215 498-765 2-220 (242)
154 PRK13652 cbiO cobalt transport 100.0 1.2E-39 2.7E-44 349.0 19.0 207 498-765 3-216 (277)
155 PRK13638 cbiO cobalt transport 100.0 9.1E-40 2E-44 349.0 17.9 208 498-765 1-214 (271)
156 PRK13649 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 349.9 18.6 212 498-765 2-223 (280)
157 PRK13641 cbiO cobalt transport 100.0 1.1E-39 2.4E-44 351.0 18.5 212 498-765 2-223 (287)
158 PRK13536 nodulation factor exp 100.0 1.7E-39 3.7E-44 356.4 20.1 206 497-765 40-250 (340)
159 PRK11264 putative amino-acid A 100.0 1.5E-39 3.3E-44 342.9 18.9 215 498-765 3-222 (250)
160 PRK11614 livF leucine/isoleuci 100.0 1.8E-39 3.8E-44 339.9 19.0 205 498-765 5-215 (237)
161 TIGR02982 heterocyst_DevA ABC 100.0 1.5E-39 3.3E-44 336.6 18.3 211 499-765 2-219 (220)
162 PRK11231 fecE iron-dicitrate t 100.0 2.2E-39 4.7E-44 343.0 19.8 210 498-765 2-216 (255)
163 PRK13633 cobalt transporter AT 100.0 2.1E-39 4.5E-44 347.8 19.8 209 498-765 4-222 (280)
164 COG4615 PvdE ABC-type sideroph 100.0 2.5E-36 5.5E-41 319.6 42.7 410 257-765 109-526 (546)
165 PRK13640 cbiO cobalt transport 100.0 1.7E-39 3.6E-44 348.8 19.0 209 497-765 4-221 (282)
166 PRK13648 cbiO cobalt transport 100.0 2.4E-39 5.1E-44 345.4 19.7 208 498-765 7-220 (269)
167 PRK15079 oligopeptide ABC tran 100.0 1.9E-39 4E-44 355.1 19.3 215 497-765 7-240 (331)
168 TIGR03608 L_ocin_972_ABC putat 100.0 9E-40 2E-44 334.6 15.8 202 501-760 1-206 (206)
169 PRK10575 iron-hydroxamate tran 100.0 3.2E-39 6.8E-44 343.7 20.4 210 498-765 11-226 (265)
170 COG1131 CcmA ABC-type multidru 100.0 2.5E-39 5.3E-44 348.4 19.3 206 498-765 4-215 (293)
171 PRK11248 tauB taurine transpor 100.0 3.5E-39 7.5E-44 341.4 20.0 198 498-762 1-204 (255)
172 TIGR03410 urea_trans_UrtE urea 100.0 2E-39 4.4E-44 337.8 17.9 203 499-765 1-210 (230)
173 PRK14235 phosphate transporter 100.0 3.3E-39 7.2E-44 343.9 19.9 216 496-765 17-240 (267)
174 PRK13642 cbiO cobalt transport 100.0 2.6E-39 5.6E-44 346.5 19.0 208 498-765 4-218 (277)
175 PRK10895 lipopolysaccharide AB 100.0 3E-39 6.5E-44 339.0 19.1 208 498-765 3-215 (241)
176 TIGR01186 proV glycine betaine 100.0 1.4E-39 3.1E-44 358.6 17.4 197 512-765 5-208 (363)
177 PRK11300 livG leucine/isoleuci 100.0 3.8E-39 8.3E-44 340.9 20.0 222 498-765 5-232 (255)
178 PRK14247 phosphate ABC transpo 100.0 4.8E-39 1E-43 339.3 20.6 212 498-765 3-223 (250)
179 PRK13645 cbiO cobalt transport 100.0 2.6E-39 5.7E-44 348.6 19.0 214 497-765 5-229 (289)
180 TIGR02769 nickel_nikE nickel i 100.0 3E-39 6.4E-44 343.9 19.1 212 498-765 2-229 (265)
181 PRK13639 cbiO cobalt transport 100.0 2.5E-39 5.4E-44 346.3 18.3 209 498-765 1-215 (275)
182 PRK11124 artP arginine transpo 100.0 3.2E-39 6.8E-44 339.0 18.7 213 498-765 2-219 (242)
183 PRK10619 histidine/lysine/argi 100.0 3.8E-39 8.2E-44 341.5 19.3 222 497-765 4-230 (257)
184 PRK13548 hmuV hemin importer A 100.0 5.2E-39 1.1E-43 340.8 20.3 206 498-765 2-219 (258)
185 PRK14237 phosphate transporter 100.0 5.7E-39 1.2E-43 342.1 20.3 215 496-765 18-240 (267)
186 PRK14248 phosphate ABC transpo 100.0 5.8E-39 1.3E-43 342.2 20.4 214 497-765 20-241 (268)
187 cd03229 ABC_Class3 This class 100.0 6.5E-39 1.4E-43 321.3 19.2 172 499-764 1-178 (178)
188 COG4555 NatA ABC-type Na+ tran 100.0 9.1E-40 2E-44 319.7 12.6 206 498-765 1-211 (245)
189 PRK14268 phosphate ABC transpo 100.0 3.5E-39 7.5E-44 342.1 18.1 213 497-765 11-231 (258)
190 TIGR03873 F420-0_ABC_ATP propo 100.0 6.4E-39 1.4E-43 339.6 20.0 209 499-765 2-215 (256)
191 cd03247 ABCC_cytochrome_bd The 100.0 5.7E-39 1.2E-43 321.6 18.4 172 499-765 1-174 (178)
192 cd03234 ABCG_White The White s 100.0 5.2E-39 1.1E-43 334.0 18.6 207 499-765 4-222 (226)
193 TIGR03005 ectoine_ehuA ectoine 100.0 4.6E-39 9.9E-44 339.9 18.3 217 499-765 1-225 (252)
194 PRK14256 phosphate ABC transpo 100.0 8.7E-39 1.9E-43 337.8 20.2 214 497-765 3-225 (252)
195 TIGR01277 thiQ thiamine ABC tr 100.0 9.2E-39 2E-43 329.2 19.8 201 499-765 1-207 (213)
196 PRK14249 phosphate ABC transpo 100.0 1.1E-38 2.4E-43 336.7 20.8 213 498-765 4-224 (251)
197 TIGR03522 GldA_ABC_ATP gliding 100.0 6.3E-39 1.4E-43 347.4 19.4 205 498-765 2-210 (301)
198 PRK14240 phosphate transporter 100.0 7.7E-39 1.7E-43 337.7 19.5 214 497-765 2-223 (250)
199 cd03294 ABC_Pro_Gly_Bertaine T 100.0 3.2E-39 6.9E-44 344.4 16.6 207 500-765 26-239 (269)
200 cd03230 ABC_DR_subfamily_A Thi 100.0 1.2E-38 2.7E-43 317.8 19.7 167 499-764 1-172 (173)
201 PRK11308 dppF dipeptide transp 100.0 7.4E-39 1.6E-43 350.0 19.6 213 498-765 5-233 (327)
202 COG4181 Predicted ABC-type tra 100.0 7.2E-39 1.6E-43 305.5 16.7 212 498-766 6-225 (228)
203 PRK14245 phosphate ABC transpo 100.0 8.6E-39 1.9E-43 337.4 19.2 213 498-765 3-223 (250)
204 PRK14239 phosphate transporter 100.0 9.6E-39 2.1E-43 337.3 19.3 213 498-765 5-225 (252)
205 COG1137 YhbG ABC-type (unclass 100.0 5.4E-40 1.2E-44 321.0 8.9 209 498-765 4-217 (243)
206 PRK14267 phosphate ABC transpo 100.0 1.1E-38 2.5E-43 337.0 19.6 214 498-765 4-226 (253)
207 TIGR01978 sufC FeS assembly AT 100.0 1.1E-38 2.3E-43 335.0 19.2 213 499-765 1-223 (243)
208 cd03228 ABCC_MRP_Like The MRP 100.0 1.2E-38 2.7E-43 317.2 18.7 169 499-764 1-171 (171)
209 cd03231 ABC_CcmA_heme_exporter 100.0 1.9E-38 4.2E-43 324.0 20.5 193 499-760 1-198 (201)
210 PRK10253 iron-enterobactin tra 100.0 1.1E-38 2.3E-43 339.7 19.3 210 498-765 7-222 (265)
211 PRK14274 phosphate ABC transpo 100.0 1.2E-38 2.6E-43 338.1 19.6 214 497-765 11-232 (259)
212 PRK11022 dppD dipeptide transp 100.0 8.8E-39 1.9E-43 349.4 19.0 215 498-765 3-232 (326)
213 PRK09473 oppD oligopeptide tra 100.0 1E-38 2.2E-43 349.2 19.3 216 497-765 11-240 (330)
214 PRK14251 phosphate ABC transpo 100.0 1.2E-38 2.5E-43 336.5 19.0 213 498-765 4-224 (251)
215 PRK14262 phosphate ABC transpo 100.0 1.2E-38 2.7E-43 336.2 18.8 213 498-765 3-223 (250)
216 PRK10771 thiQ thiamine transpo 100.0 2.6E-38 5.7E-43 330.0 20.7 202 498-765 1-208 (232)
217 PRK10070 glycine betaine trans 100.0 1.2E-38 2.7E-43 355.1 19.1 208 499-765 29-243 (400)
218 TIGR03740 galliderm_ABC gallid 100.0 1.8E-38 3.9E-43 329.2 19.0 197 499-765 1-202 (223)
219 TIGR00968 3a0106s01 sulfate AB 100.0 1.6E-38 3.4E-43 332.8 18.6 203 499-765 1-209 (237)
220 PRK14261 phosphate ABC transpo 100.0 2.7E-38 5.8E-43 334.3 20.0 212 498-765 6-226 (253)
221 PRK14236 phosphate transporter 100.0 2.7E-38 5.9E-43 337.8 20.3 215 496-765 23-245 (272)
222 PRK14270 phosphate ABC transpo 100.0 2.8E-38 6E-43 333.7 19.8 213 498-765 4-224 (251)
223 PRK14244 phosphate ABC transpo 100.0 2.1E-38 4.6E-43 334.6 18.8 213 499-765 6-226 (251)
224 PRK14238 phosphate transporter 100.0 2.9E-38 6.3E-43 337.4 19.9 213 497-765 23-244 (271)
225 PRK14275 phosphate ABC transpo 100.0 3.4E-38 7.4E-43 339.3 20.5 215 496-765 37-259 (286)
226 PRK13543 cytochrome c biogenes 100.0 4.2E-38 9.1E-43 324.6 20.3 198 497-762 10-212 (214)
227 TIGR01188 drrA daunorubicin re 100.0 1.2E-38 2.7E-43 345.4 17.0 196 507-765 2-202 (302)
228 cd03300 ABC_PotA_N PotA is an 100.0 1.9E-38 4.2E-43 331.1 17.8 203 499-765 1-209 (232)
229 PRK11144 modC molybdate transp 100.0 4.4E-38 9.6E-43 347.5 21.1 201 498-765 1-207 (352)
230 PRK14255 phosphate ABC transpo 100.0 4.2E-38 9E-43 332.5 19.9 213 498-765 5-225 (252)
231 PRK14254 phosphate ABC transpo 100.0 4.6E-38 1E-42 338.0 20.5 214 495-765 36-258 (285)
232 PRK13540 cytochrome c biogenes 100.0 4.5E-38 9.7E-43 321.0 19.1 193 498-758 1-197 (200)
233 cd03297 ABC_ModC_molybdenum_tr 100.0 3.2E-38 6.9E-43 325.3 18.1 203 499-765 2-210 (214)
234 PRK14241 phosphate transporter 100.0 4.1E-38 8.9E-43 333.8 19.4 210 498-762 4-222 (258)
235 PRK14271 phosphate ABC transpo 100.0 8.3E-38 1.8E-42 334.6 21.6 213 497-765 20-240 (276)
236 PRK14253 phosphate ABC transpo 100.0 4.1E-38 8.9E-43 332.0 18.8 212 498-765 3-222 (249)
237 PRK13547 hmuV hemin importer A 100.0 4.9E-38 1.1E-42 335.4 19.5 210 498-765 1-233 (272)
238 PRK13538 cytochrome c biogenes 100.0 5.6E-38 1.2E-42 321.3 19.1 197 498-760 1-202 (204)
239 PRK11701 phnK phosphonate C-P 100.0 5.1E-38 1.1E-42 333.1 19.5 214 498-765 6-230 (258)
240 cd03215 ABC_Carb_Monos_II This 100.0 4.7E-38 1E-42 316.1 18.2 170 498-764 4-181 (182)
241 TIGR03415 ABC_choXWV_ATP choli 100.0 4.2E-38 9E-43 348.6 19.3 207 503-765 29-243 (382)
242 PRK14243 phosphate transporter 100.0 5.2E-38 1.1E-42 334.2 19.3 208 498-762 10-225 (264)
243 PRK14246 phosphate ABC transpo 100.0 5.2E-38 1.1E-42 332.8 18.9 215 497-765 9-230 (257)
244 cd03233 ABC_PDR_domain1 The pl 100.0 8E-38 1.7E-42 319.7 19.6 184 498-765 3-198 (202)
245 PRK14272 phosphate ABC transpo 100.0 6.5E-38 1.4E-42 331.0 19.1 213 498-765 4-225 (252)
246 PRK15112 antimicrobial peptide 100.0 6.5E-38 1.4E-42 334.0 19.2 209 498-765 4-228 (267)
247 PRK14265 phosphate ABC transpo 100.0 1.2E-37 2.6E-42 333.1 21.3 209 497-762 19-235 (274)
248 PRK14260 phosphate ABC transpo 100.0 6.8E-38 1.5E-42 332.4 19.1 211 497-762 6-224 (259)
249 cd03213 ABCG_EPDR ABCG transpo 100.0 6.5E-38 1.4E-42 318.4 18.0 176 498-765 3-190 (194)
250 PRK09984 phosphonate/organopho 100.0 7.6E-38 1.6E-42 332.5 18.9 219 498-765 4-231 (262)
251 TIGR02142 modC_ABC molybdenum 100.0 8.7E-38 1.9E-42 345.6 20.1 201 503-765 4-210 (354)
252 PRK15056 manganese/iron transp 100.0 1.4E-37 3.1E-42 332.2 21.0 207 498-765 6-219 (272)
253 PRK14258 phosphate ABC transpo 100.0 1E-37 2.2E-42 331.4 19.6 211 497-762 6-226 (261)
254 PRK15093 antimicrobial peptide 100.0 1.1E-37 2.4E-42 341.7 20.1 220 498-765 3-237 (330)
255 COG0410 LivF ABC-type branched 100.0 1.4E-37 2.9E-42 312.7 18.9 207 498-765 3-215 (237)
256 COG1123 ATPase components of v 100.0 8.8E-38 1.9E-42 351.0 19.3 214 496-765 278-508 (539)
257 PRK13539 cytochrome c biogenes 100.0 1.5E-37 3.3E-42 318.8 19.4 195 498-762 2-200 (207)
258 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.3E-37 9.3E-42 329.3 23.6 195 496-765 37-236 (282)
259 PRK14263 phosphate ABC transpo 100.0 2.3E-37 5.1E-42 328.6 21.4 207 498-761 8-222 (261)
260 PRK14252 phosphate ABC transpo 100.0 2.1E-37 4.5E-42 329.7 21.0 216 496-765 14-238 (265)
261 TIGR01189 ccmA heme ABC export 100.0 1.5E-37 3.2E-42 316.6 18.5 193 499-759 1-197 (198)
262 cd03299 ABC_ModC_like Archeal 100.0 1.2E-37 2.5E-42 325.9 18.0 202 499-765 1-208 (235)
263 TIGR02323 CP_lyasePhnK phospho 100.0 1.9E-37 4.1E-42 327.7 19.8 214 498-765 3-227 (253)
264 PRK14266 phosphate ABC transpo 100.0 1.6E-37 3.5E-42 327.6 18.7 213 498-765 3-223 (250)
265 PRK10418 nikD nickel transport 100.0 3.4E-37 7.4E-42 326.1 21.1 204 498-765 4-219 (254)
266 cd03232 ABC_PDR_domain2 The pl 100.0 1.7E-37 3.6E-42 314.8 17.9 174 498-764 3-187 (192)
267 PRK10419 nikE nickel transport 100.0 1.8E-37 3.9E-42 330.7 19.0 212 498-765 3-230 (268)
268 COG0411 LivG ABC-type branched 100.0 7.6E-38 1.6E-42 316.8 15.1 220 498-766 4-229 (250)
269 PRK15439 autoinducer 2 ABC tra 100.0 3.3E-37 7.1E-42 357.2 22.0 203 498-765 11-218 (510)
270 COG4619 ABC-type uncharacteriz 100.0 4.5E-38 9.8E-43 299.2 12.0 193 511-764 14-211 (223)
271 PRK10762 D-ribose transporter 100.0 1.8E-37 3.8E-42 358.9 19.6 211 498-765 4-219 (501)
272 PRK09544 znuC high-affinity zi 100.0 5.5E-37 1.2E-41 323.8 21.6 185 498-762 4-196 (251)
273 COG4175 ProV ABC-type proline/ 100.0 9.8E-38 2.1E-42 323.5 14.9 212 498-766 4-244 (386)
274 TIGR02324 CP_lyasePhnL phospho 100.0 3E-37 6.5E-42 320.2 18.3 211 498-761 1-223 (224)
275 PRK13549 xylose transporter AT 100.0 2.9E-37 6.2E-42 357.6 20.2 210 498-765 5-221 (506)
276 PRK11288 araG L-arabinose tran 100.0 4E-37 8.7E-42 355.9 21.1 211 498-766 4-219 (501)
277 cd03217 ABC_FeS_Assembly ABC-t 100.0 4.1E-37 8.8E-42 314.0 18.6 175 499-765 1-183 (200)
278 PRK09700 D-allose transporter 100.0 3.4E-37 7.5E-42 357.3 20.4 214 498-765 5-223 (510)
279 PRK14264 phosphate ABC transpo 100.0 7E-37 1.5E-41 332.0 20.6 226 496-765 43-278 (305)
280 TIGR01166 cbiO cobalt transpor 100.0 2.2E-37 4.7E-42 313.3 15.2 181 512-750 4-189 (190)
281 cd03267 ABC_NatA_like Similar 100.0 4.1E-37 9E-42 322.0 17.8 193 512-765 33-232 (236)
282 CHL00131 ycf16 sulfate ABC tra 100.0 8.3E-37 1.8E-41 322.5 20.2 214 498-765 7-230 (252)
283 COG0444 DppD ABC-type dipeptid 100.0 5.2E-37 1.1E-41 323.3 17.8 215 499-765 2-232 (316)
284 PRK09580 sufC cysteine desulfu 100.0 9.7E-37 2.1E-41 321.2 19.9 215 498-765 1-224 (248)
285 PRK13541 cytochrome c biogenes 100.0 1E-36 2.2E-41 309.8 18.9 189 498-758 1-193 (195)
286 COG4525 TauB ABC-type taurine 100.0 6.3E-37 1.4E-41 298.0 16.2 201 498-763 3-209 (259)
287 COG1129 MglA ABC-type sugar tr 100.0 6.3E-37 1.4E-41 342.0 17.9 213 498-767 8-225 (500)
288 COG4559 ABC-type hemin transpo 100.0 7.6E-37 1.6E-41 301.4 15.6 213 498-772 1-226 (259)
289 cd03216 ABC_Carb_Monos_I This 100.0 1.5E-36 3.4E-41 299.8 18.0 156 499-765 1-160 (163)
290 PRK10982 galactose/methyl gala 100.0 1.2E-36 2.6E-41 351.2 19.3 207 501-765 1-212 (491)
291 PRK10261 glutathione transport 100.0 1.3E-36 2.8E-41 359.5 20.0 213 497-765 312-542 (623)
292 TIGR01184 ntrCD nitrate transp 100.0 1.6E-36 3.4E-41 316.4 18.1 187 516-765 1-193 (230)
293 cd03214 ABC_Iron-Siderophores_ 100.0 8.5E-37 1.9E-41 306.5 14.8 171 500-765 1-176 (180)
294 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-36 5.5E-41 349.3 20.7 211 499-765 2-219 (500)
295 PRK10938 putative molybdenum t 100.0 1.6E-36 3.5E-41 350.1 18.6 198 498-765 3-213 (490)
296 COG1123 ATPase components of v 100.0 2.4E-36 5.1E-41 339.4 19.1 214 498-765 5-233 (539)
297 PRK03695 vitamin B12-transport 100.0 2.8E-36 6.1E-41 318.0 17.4 198 500-765 2-211 (248)
298 PRK10261 glutathione transport 100.0 3.4E-36 7.3E-41 356.0 19.6 227 497-766 11-248 (623)
299 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 2.7E-36 5.9E-41 313.3 16.4 194 499-765 23-220 (224)
300 PRK13549 xylose transporter AT 100.0 4.1E-36 8.8E-41 348.0 18.7 214 498-765 259-483 (506)
301 PRK15134 microcin C ABC transp 100.0 5.2E-36 1.1E-40 348.9 19.0 215 498-765 5-235 (529)
302 TIGR03269 met_CoM_red_A2 methy 100.0 8.6E-36 1.9E-40 346.4 20.2 219 497-765 278-506 (520)
303 PRK11819 putative ABC transpor 100.0 1.1E-35 2.4E-40 347.8 21.2 223 498-765 6-238 (556)
304 TIGR02770 nickel_nikD nickel i 100.0 5E-36 1.1E-40 312.5 16.2 192 515-765 1-204 (230)
305 TIGR03269 met_CoM_red_A2 methy 100.0 5.3E-36 1.2E-40 348.2 17.7 218 499-765 1-247 (520)
306 PRK09700 D-allose transporter 100.0 8.8E-36 1.9E-40 345.6 19.5 214 498-765 265-487 (510)
307 COG4172 ABC-type uncharacteriz 100.0 1.1E-35 2.4E-40 316.0 18.4 215 496-765 274-505 (534)
308 TIGR02633 xylG D-xylose ABC tr 100.0 9.4E-36 2E-40 344.6 18.2 215 498-765 257-481 (500)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.9E-35 6.3E-40 344.1 21.8 223 498-765 4-236 (552)
310 PRK15134 microcin C ABC transp 100.0 1.2E-35 2.5E-40 345.9 17.8 212 498-765 275-504 (529)
311 PRK15064 ABC transporter ATP-b 100.0 2.9E-35 6.2E-40 342.8 20.7 224 498-765 1-230 (530)
312 COG4598 HisP ABC-type histidin 100.0 3.1E-36 6.6E-41 289.4 10.1 220 498-765 6-230 (256)
313 COG3845 ABC-type uncharacteriz 100.0 3.6E-35 7.9E-40 321.5 18.0 210 498-765 4-218 (501)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.1E-34 2.4E-39 280.7 18.9 143 499-764 1-144 (144)
315 COG4608 AppF ABC-type oligopep 100.0 3.4E-35 7.4E-40 303.6 16.0 173 498-765 4-188 (268)
316 cd03237 ABC_RNaseL_inhibitor_d 100.0 6.6E-35 1.4E-39 306.9 18.2 181 506-763 1-192 (246)
317 TIGR03771 anch_rpt_ABC anchore 100.0 1.1E-34 2.4E-39 301.1 17.8 183 521-765 1-190 (223)
318 PRK15064 ABC transporter ATP-b 100.0 2E-34 4.3E-39 335.7 22.0 192 497-766 318-514 (530)
319 TIGR01257 rim_protein retinal- 100.0 1.1E-34 2.5E-39 367.9 21.1 208 497-765 927-1138(2272)
320 PRK10535 macrolide transporter 100.0 1.2E-34 2.6E-39 344.1 18.9 211 498-765 4-221 (648)
321 PRK13546 teichoic acids export 100.0 2.2E-34 4.7E-39 306.0 18.7 181 512-765 36-221 (264)
322 PLN03211 ABC transporter G-25; 100.0 1.4E-34 3.1E-39 342.3 18.9 205 501-765 71-285 (659)
323 PRK10762 D-ribose transporter 100.0 1.4E-34 3.1E-39 334.7 18.4 209 498-766 257-474 (501)
324 PRK11288 araG L-arabinose tran 100.0 1.6E-34 3.5E-39 334.2 18.5 209 498-765 257-474 (501)
325 COG4152 ABC-type uncharacteriz 100.0 7E-35 1.5E-39 292.9 12.3 202 498-765 2-208 (300)
326 COG4148 ModC ABC-type molybdat 100.0 7.2E-35 1.6E-39 297.5 12.5 188 516-765 14-207 (352)
327 PRK10938 putative molybdenum t 100.0 2.4E-34 5.3E-39 332.0 18.1 212 497-765 259-481 (490)
328 PRK13545 tagH teichoic acids e 100.0 5E-34 1.1E-38 321.9 20.1 196 497-765 20-221 (549)
329 COG4161 ArtP ABC-type arginine 100.0 2.3E-34 5E-39 271.9 14.2 214 498-766 2-220 (242)
330 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.2E-34 6.9E-39 303.1 15.9 206 503-762 5-214 (255)
331 TIGR01257 rim_protein retinal- 100.0 5E-34 1.1E-38 362.1 20.6 209 496-765 1935-2148(2272)
332 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-33 2.3E-38 331.0 21.8 193 497-763 321-516 (552)
333 PRK11819 putative ABC transpor 100.0 1.1E-33 2.4E-38 330.9 21.7 193 497-763 323-518 (556)
334 PRK10982 galactose/methyl gala 100.0 4E-34 8.7E-39 330.2 17.6 213 498-766 250-470 (491)
335 COG4604 CeuD ABC-type enteroch 100.0 1.3E-34 2.9E-39 282.4 9.5 208 498-765 1-214 (252)
336 COG0488 Uup ATPase components 100.0 1.7E-33 3.7E-38 321.9 19.9 228 498-772 3-235 (530)
337 PRK11147 ABC transporter ATPas 100.0 2.5E-33 5.4E-38 332.5 21.9 201 497-771 318-522 (635)
338 PRK10636 putative ABC transpor 100.0 2.5E-33 5.3E-38 332.1 21.7 220 498-766 1-225 (638)
339 PRK15439 autoinducer 2 ABC tra 100.0 1.2E-33 2.7E-38 327.4 18.2 207 497-766 267-482 (510)
340 TIGR00955 3a01204 The Eye Pigm 100.0 1.2E-33 2.6E-38 334.0 17.3 197 512-765 37-245 (617)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 2.3E-33 5E-38 280.0 16.3 142 502-765 4-150 (177)
342 PLN03073 ABC transporter F fam 100.0 5.7E-33 1.2E-37 330.6 21.4 194 497-765 507-702 (718)
343 PRK10636 putative ABC transpor 100.0 5.6E-33 1.2E-37 329.1 21.1 191 497-765 311-505 (638)
344 PRK13409 putative ATPase RIL; 100.0 5.5E-33 1.2E-37 325.1 20.2 185 497-762 339-529 (590)
345 TIGR00956 3a01205 Pleiotropic 100.0 4.9E-33 1.1E-37 352.4 21.3 208 498-763 759-979 (1394)
346 TIGR01187 potA spermidine/putr 100.0 2E-33 4.3E-38 307.4 14.2 173 531-765 1-179 (325)
347 COG1119 ModF ABC-type molybden 100.0 5.8E-33 1.3E-37 281.3 16.1 214 496-766 29-252 (257)
348 COG4172 ABC-type uncharacteriz 100.0 1.2E-32 2.7E-37 292.8 17.1 215 498-765 6-236 (534)
349 PRK15177 Vi polysaccharide exp 100.0 1.1E-32 2.3E-37 284.2 15.5 174 515-765 2-181 (213)
350 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.4E-32 5.1E-37 268.0 17.3 152 501-764 2-157 (157)
351 PRK11147 ABC transporter ATPas 100.0 3E-32 6.5E-37 323.3 20.7 222 498-766 3-232 (635)
352 COG4136 ABC-type uncharacteriz 100.0 5.5E-32 1.2E-36 253.2 14.9 200 497-761 1-208 (213)
353 cd03238 ABC_UvrA The excision 100.0 2.1E-31 4.5E-36 265.8 17.7 155 512-765 7-166 (176)
354 PLN03140 ABC transporter G fam 100.0 1.7E-31 3.6E-36 337.6 21.2 211 498-764 867-1098(1470)
355 PRK13409 putative ATPase RIL; 100.0 5.2E-32 1.1E-36 316.9 14.6 192 503-763 78-287 (590)
356 PLN03073 ABC transporter F fam 100.0 1.8E-31 3.9E-36 317.7 13.6 237 497-766 176-420 (718)
357 COG0396 sufC Cysteine desulfur 100.0 1.9E-30 4.2E-35 260.0 17.5 213 498-766 3-224 (251)
358 COG4107 PhnK ABC-type phosphon 100.0 1.5E-30 3.1E-35 249.0 14.7 220 498-765 6-230 (258)
359 COG1101 PhnK ABC-type uncharac 100.0 3.6E-31 7.9E-36 261.8 8.8 201 512-765 18-227 (263)
360 COG4674 Uncharacterized ABC-ty 100.0 1.5E-30 3.3E-35 253.6 10.9 216 498-765 5-224 (249)
361 TIGR00956 3a01205 Pleiotropic 100.0 5.5E-30 1.2E-34 324.7 16.9 202 512-765 73-289 (1394)
362 COG0488 Uup ATPase components 100.0 3.2E-29 6.8E-34 287.0 19.3 190 496-762 319-511 (530)
363 PLN03140 ABC transporter G fam 100.0 1.7E-29 3.8E-34 319.3 16.7 221 512-765 177-416 (1470)
364 COG4133 CcmA ABC-type transpor 100.0 3.9E-29 8.4E-34 243.4 13.4 187 499-751 3-193 (209)
365 KOG0061 Transporter, ABC super 100.0 5.2E-29 1.1E-33 292.3 17.3 212 497-764 24-248 (613)
366 COG4167 SapF ABC-type antimicr 100.0 9E-29 1.9E-33 238.5 15.2 214 498-766 4-229 (267)
367 PF00005 ABC_tran: ABC transpo 100.0 2.3E-29 5E-34 240.5 10.2 136 516-720 1-137 (137)
368 COG4778 PhnL ABC-type phosphon 100.0 1E-29 2.2E-34 242.6 6.7 213 498-762 4-227 (235)
369 COG4586 ABC-type uncharacteriz 100.0 3.7E-29 8.1E-34 255.4 11.2 189 513-765 37-235 (325)
370 COG1134 TagH ABC-type polysacc 100.0 1.5E-28 3.3E-33 249.6 15.3 183 512-765 39-225 (249)
371 cd03270 ABC_UvrA_I The excisio 100.0 3.3E-28 7.1E-33 253.1 16.3 90 664-761 118-212 (226)
372 PRK11098 microcin B17 transpor 99.9 1.5E-24 3.2E-29 239.8 40.9 301 142-459 77-399 (409)
373 cd03278 ABC_SMC_barmotin Barmo 99.9 9E-28 1.9E-32 244.5 14.1 171 517-762 14-190 (197)
374 PRK12369 putative transporter; 99.9 2.1E-24 4.5E-29 234.5 39.5 293 150-457 10-323 (326)
375 PF06472 ABC_membrane_2: ABC t 99.9 1.2E-24 2.6E-29 233.5 35.9 274 131-405 4-280 (281)
376 cd03272 ABC_SMC3_euk Eukaryoti 99.9 3.3E-26 7.1E-31 240.4 16.6 77 686-762 153-235 (243)
377 cd03279 ABC_sbcCD SbcCD and ot 99.9 1.6E-25 3.6E-30 230.8 14.8 187 498-764 5-210 (213)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.1E-25 4.6E-30 235.7 12.8 190 526-761 25-242 (251)
379 KOG0059 Lipid exporter ABCA1 a 99.9 2.1E-25 4.6E-30 272.4 14.2 209 497-765 563-776 (885)
380 cd03271 ABC_UvrA_II The excisi 99.9 3E-25 6.4E-30 234.4 13.1 94 661-762 147-246 (261)
381 KOG0927 Predicted transporter 99.9 2.6E-25 5.5E-30 245.0 10.2 195 497-765 388-584 (614)
382 cd03240 ABC_Rad50 The catalyti 99.9 2.6E-24 5.5E-29 220.4 15.6 163 519-764 16-199 (204)
383 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4E-25 8.6E-30 227.6 6.1 194 498-763 5-205 (212)
384 COG1129 MglA ABC-type sugar tr 99.9 6.9E-24 1.5E-28 237.7 15.1 225 498-784 263-495 (500)
385 KOG0927 Predicted transporter 99.9 2.4E-23 5.2E-28 229.6 15.8 215 496-765 73-297 (614)
386 COG4138 BtuD ABC-type cobalami 99.9 2.8E-24 6E-29 206.3 2.5 198 498-767 3-212 (248)
387 KOG0065 Pleiotropic drug resis 99.9 1.1E-23 2.5E-28 252.3 7.1 211 498-765 787-1009(1391)
388 KOG0062 ATPase component of AB 99.9 5E-23 1.1E-27 225.9 9.1 193 496-764 78-272 (582)
389 cd03275 ABC_SMC1_euk Eukaryoti 99.9 2.2E-22 4.9E-27 212.1 12.0 76 689-764 153-235 (247)
390 KOG0066 eIF2-interacting prote 99.9 5.3E-22 1.1E-26 212.5 14.6 191 497-763 585-777 (807)
391 PRK00635 excinuclease ABC subu 99.9 1.3E-21 2.8E-26 246.1 19.1 89 665-761 791-885 (1809)
392 PRK00349 uvrA excinuclease ABC 99.9 3.5E-21 7.7E-26 233.3 17.1 91 663-761 810-906 (943)
393 KOG0062 ATPase component of AB 99.9 2.9E-21 6.4E-26 212.1 14.5 198 497-767 361-559 (582)
394 cd03276 ABC_SMC6_euk Eukaryoti 99.9 5.5E-21 1.2E-25 194.9 15.4 82 687-768 105-196 (198)
395 TIGR00630 uvra excinuclease AB 99.8 1.6E-20 3.4E-25 227.3 18.3 77 685-761 822-904 (924)
396 COG1245 Predicted ATPase, RNas 99.8 1.6E-20 3.5E-25 203.3 15.4 183 498-761 342-530 (591)
397 COG3845 ABC-type uncharacteriz 99.8 1.3E-19 2.8E-24 199.7 17.7 216 496-767 255-483 (501)
398 COG4170 SapD ABC-type antimicr 99.8 1.9E-20 4E-25 184.7 9.2 218 499-764 4-236 (330)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.8E-20 6E-25 190.0 10.0 76 689-765 89-168 (200)
400 KOG2355 Predicted ABC-type tra 99.8 1.4E-18 3.1E-23 171.1 14.4 213 496-767 11-228 (291)
401 cd03239 ABC_SMC_head The struc 99.8 1.5E-18 3.3E-23 173.9 14.6 71 692-762 95-172 (178)
402 cd03241 ABC_RecN RecN ATPase i 99.8 3.3E-18 7.2E-23 183.4 15.7 89 689-781 168-262 (276)
403 cd03277 ABC_SMC5_euk Eukaryoti 99.8 5.8E-18 1.3E-22 174.5 16.4 79 686-764 121-211 (213)
404 COG2401 ABC-type ATPase fused 99.8 3.4E-18 7.3E-23 183.3 13.7 177 513-766 396-588 (593)
405 PF00664 ABC_membrane: ABC tra 99.8 9.8E-15 2.1E-19 151.9 37.2 262 159-426 3-272 (275)
406 cd03227 ABC_Class2 ABC-type Cl 99.7 4.5E-18 9.7E-23 168.0 9.5 71 692-762 78-155 (162)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.7 9.7E-18 2.1E-22 173.9 5.9 76 690-765 88-170 (222)
408 COG1245 Predicted ATPase, RNas 99.7 2.1E-17 4.6E-22 179.3 8.1 90 663-761 194-287 (591)
409 KOG0066 eIF2-interacting prote 99.7 3.4E-17 7.4E-22 175.9 7.0 212 498-765 264-487 (807)
410 cd03243 ABC_MutS_homologs The 99.7 4.5E-17 9.7E-22 166.6 6.9 74 690-764 90-167 (202)
411 PF05992 SbmA_BacA: SbmA/BacA- 99.7 1.8E-13 3.8E-18 144.7 34.0 274 164-454 19-312 (315)
412 KOG0065 Pleiotropic drug resis 99.7 1.2E-16 2.6E-21 192.7 10.9 197 512-765 127-340 (1391)
413 COG0178 UvrA Excinuclease ATPa 99.7 6.1E-16 1.3E-20 178.2 15.5 81 682-762 813-899 (935)
414 PRK00635 excinuclease ABC subu 99.6 1.4E-15 3E-20 192.3 14.9 83 681-763 1689-1777(1809)
415 cd03242 ABC_RecF RecF is a rec 99.6 2E-15 4.4E-20 161.4 13.9 76 689-764 181-268 (270)
416 cd01128 rho_factor Transcripti 99.6 1.4E-15 3E-20 159.9 10.2 84 680-765 117-211 (249)
417 cd03283 ABC_MutS-like MutS-lik 99.6 8.8E-16 1.9E-20 156.7 8.5 136 512-753 13-153 (199)
418 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.2E-14 2.7E-19 148.7 11.6 64 689-753 89-156 (204)
419 cd03284 ABC_MutS1 MutS1 homolo 99.6 7.9E-15 1.7E-19 151.6 9.5 64 701-764 99-169 (216)
420 cd00820 PEPCK_HprK Phosphoenol 99.5 1.4E-14 3E-19 132.0 6.9 77 513-620 2-78 (107)
421 TIGR00630 uvra excinuclease AB 99.5 3.9E-14 8.4E-19 172.2 11.1 75 686-760 482-561 (924)
422 PRK00349 uvrA excinuclease ABC 99.5 4.4E-14 9.5E-19 172.0 10.6 75 686-760 484-563 (943)
423 TIGR02858 spore_III_AA stage I 99.5 1.8E-13 3.9E-18 145.5 12.0 37 527-563 112-148 (270)
424 COG1133 SbmA ABC-type long-cha 99.5 4.4E-10 9.5E-15 116.4 36.2 275 167-458 100-394 (405)
425 KOG0063 RNAse L inhibitor, ABC 99.4 4.4E-13 9.6E-18 144.9 11.6 178 506-762 343-532 (592)
426 PRK00064 recF recombination pr 99.4 1.7E-12 3.8E-17 144.3 13.9 76 690-765 272-359 (361)
427 PF02463 SMC_N: RecF/RecN/SMC 99.4 4.3E-12 9.3E-17 131.4 15.9 72 691-762 136-213 (220)
428 TIGR00606 rad50 rad50. This fa 99.4 8.2E-13 1.8E-17 168.9 12.8 133 608-781 1153-1305(1311)
429 smart00534 MUTSac ATPase domai 99.4 3E-13 6.6E-18 136.5 6.4 65 689-756 59-130 (185)
430 cd03281 ABC_MSH5_euk MutS5 hom 99.4 3E-12 6.5E-17 132.2 12.2 60 694-753 93-159 (213)
431 TIGR01069 mutS2 MutS2 family p 99.4 7E-13 1.5E-17 159.6 8.4 64 689-753 383-450 (771)
432 PHA02562 46 endonuclease subun 99.3 3.7E-12 8.1E-17 150.0 9.2 73 690-762 467-551 (562)
433 TIGR00634 recN DNA repair prot 99.3 1.2E-11 2.6E-16 145.3 10.3 90 690-780 439-534 (563)
434 PRK13695 putative NTPase; Prov 99.3 5.2E-12 1.1E-16 126.1 5.6 89 689-784 76-166 (174)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.2 2.3E-11 4.9E-16 126.1 9.9 48 512-559 17-65 (222)
436 PRK10869 recombination and rep 99.2 3.5E-11 7.6E-16 140.6 10.8 74 691-764 430-509 (553)
437 PTZ00132 GTP-binding nuclear p 99.2 1.9E-11 4.1E-16 126.1 6.6 41 696-736 157-202 (215)
438 KOG0063 RNAse L inhibitor, ABC 99.1 7.7E-11 1.7E-15 127.8 7.5 186 524-761 98-287 (592)
439 PRK07721 fliI flagellum-specif 99.1 6.3E-10 1.4E-14 125.8 15.2 55 512-567 145-199 (438)
440 PRK08533 flagellar accessory p 99.1 9.4E-10 2E-14 115.0 13.4 71 692-762 96-185 (230)
441 PRK00409 recombination and DNA 99.1 2.6E-10 5.7E-15 137.9 10.4 64 689-753 388-455 (782)
442 cd01124 KaiC KaiC is a circadi 99.1 7.8E-10 1.7E-14 111.1 10.9 76 688-763 68-165 (187)
443 PRK03918 chromosome segregatio 99.0 4.7E-10 1E-14 139.2 9.1 76 688-763 785-869 (880)
444 TIGR00618 sbcc exonuclease Sbc 99.0 5.5E-10 1.2E-14 140.4 9.8 76 688-763 947-1036(1042)
445 PRK01156 chromosome segregatio 99.0 7.4E-10 1.6E-14 137.6 9.7 75 688-762 798-884 (895)
446 PRK06793 fliI flagellum-specif 99.0 1.8E-09 4E-14 121.3 10.1 61 498-560 130-190 (432)
447 TIGR02788 VirB11 P-type DNA tr 99.0 1.5E-09 3.3E-14 118.3 8.9 41 519-559 137-177 (308)
448 TIGR02168 SMC_prok_B chromosom 98.9 1.9E-09 4.1E-14 137.4 7.5 76 687-762 1085-1166(1179)
449 cd03286 ABC_MSH6_euk MutS6 hom 98.9 1.6E-08 3.4E-13 104.7 12.7 38 512-549 16-53 (218)
450 cd01131 PilT Pilus retraction 98.9 5.9E-09 1.3E-13 106.5 9.2 57 701-761 66-122 (198)
451 TIGR03238 dnd_assoc_3 dnd syst 98.9 8.7E-10 1.9E-14 123.6 2.3 49 514-564 20-69 (504)
452 PRK10246 exonuclease subunit S 98.8 9.6E-09 2.1E-13 128.8 9.6 76 687-762 945-1032(1047)
453 TIGR00767 rho transcription te 98.8 4.8E-08 1E-12 108.1 13.8 58 495-553 127-195 (415)
454 TIGR02169 SMC_prok_A chromosom 98.8 9.3E-09 2E-13 131.1 8.1 75 689-763 1072-1152(1164)
455 PRK13830 conjugal transfer pro 98.8 5.8E-08 1.3E-12 118.9 14.4 60 706-765 649-722 (818)
456 cd01120 RecA-like_NTPases RecA 98.8 4.8E-08 1E-12 94.8 11.1 58 692-749 68-138 (165)
457 PRK02224 chromosome segregatio 98.7 2.3E-08 4.9E-13 124.2 8.4 75 689-763 779-869 (880)
458 PRK06067 flagellar accessory p 98.7 2.5E-07 5.5E-12 96.9 13.9 73 691-763 100-188 (234)
459 PRK06002 fliI flagellum-specif 98.6 5.4E-08 1.2E-12 109.7 8.1 69 497-567 138-206 (450)
460 cd01130 VirB11-like_ATPase Typ 98.6 1.5E-07 3.2E-12 95.2 10.4 46 515-560 14-59 (186)
461 COG0178 UvrA Excinuclease ATPa 98.5 2.6E-07 5.6E-12 108.0 9.4 80 684-763 474-558 (935)
462 PRK10733 hflB ATP-dependent me 98.5 1.2E-07 2.5E-12 113.3 5.8 28 522-551 183-210 (644)
463 PRK06995 flhF flagellar biosyn 98.5 4.2E-07 9.2E-12 103.8 9.5 41 515-555 245-285 (484)
464 PF13748 ABC_membrane_3: ABC t 98.5 0.00019 4.1E-09 73.9 27.7 154 156-325 11-167 (237)
465 TIGR00611 recf recF protein. A 98.5 2.6E-07 5.6E-12 103.1 7.0 61 690-750 274-343 (365)
466 TIGR01420 pilT_fam pilus retra 98.4 5.3E-07 1.1E-11 99.9 9.2 56 701-760 187-242 (343)
467 PRK07196 fliI flagellum-specif 98.4 1.9E-07 4E-12 105.3 5.1 92 512-618 142-234 (434)
468 smart00382 AAA ATPases associa 98.4 4.8E-06 1E-10 77.6 12.3 57 691-747 60-125 (148)
469 PRK00300 gmk guanylate kinase; 98.4 1.7E-07 3.7E-12 95.9 2.5 28 524-551 3-30 (205)
470 cd01125 repA Hexameric Replica 98.3 1.7E-06 3.7E-11 90.9 9.7 43 705-748 107-159 (239)
471 COG3910 Predicted ATPase [Gene 98.3 3E-06 6.6E-11 83.8 10.5 73 691-764 129-205 (233)
472 cd02023 UMPK Uridine monophosp 98.3 8.6E-07 1.9E-11 90.3 6.1 30 528-559 1-30 (198)
473 PRK14079 recF recombination pr 98.3 1.5E-06 3.2E-11 96.6 8.3 74 690-766 262-344 (349)
474 PRK05399 DNA mismatch repair p 98.3 2.7E-06 5.8E-11 104.6 11.2 65 692-756 667-738 (854)
475 COG0419 SbcC ATPase involved i 98.3 1.7E-06 3.6E-11 107.8 9.3 78 687-764 811-899 (908)
476 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.6E-11 112.5 7.8 61 688-748 1244-1316(1353)
477 PRK01889 GTPase RsgA; Reviewed 98.3 6.2E-07 1.3E-11 99.8 4.1 81 515-621 184-264 (356)
478 PRK13891 conjugal transfer pro 98.2 9.1E-06 2E-10 100.2 14.4 49 702-750 680-732 (852)
479 cd01136 ATPase_flagellum-secre 98.1 7.1E-06 1.5E-10 89.7 7.1 59 507-567 52-110 (326)
480 PRK07594 type III secretion sy 98.0 5.2E-06 1.1E-10 93.7 5.5 68 498-567 129-196 (433)
481 TIGR02655 circ_KaiC circadian 98.0 5.8E-06 1.3E-10 95.8 6.0 61 691-761 115-190 (484)
482 PRK08149 ATP synthase SpaL; Va 98.0 7.3E-06 1.6E-10 92.5 6.1 49 512-561 138-189 (428)
483 TIGR02546 III_secr_ATP type II 98.0 9.8E-06 2.1E-10 91.9 6.1 55 512-567 132-186 (422)
484 PF09818 ABC_ATPase: Predicted 97.9 0.0001 2.2E-09 82.2 13.8 86 680-765 311-416 (448)
485 COG2274 SunT ABC-type bacterio 97.9 0.055 1.2E-06 65.5 37.9 148 257-408 247-399 (709)
486 TIGR02524 dot_icm_DotB Dot/Icm 97.9 3.3E-05 7.1E-10 86.0 9.2 28 524-551 132-159 (358)
487 PRK13898 type IV secretion sys 97.9 0.00013 2.7E-09 90.0 14.5 46 518-563 438-483 (800)
488 PRK15494 era GTPase Era; Provi 97.9 9.1E-06 2E-10 90.0 4.0 55 494-549 14-75 (339)
489 PRK06315 type III secretion sy 97.9 1.2E-05 2.6E-10 91.1 4.9 54 513-567 152-206 (442)
490 TIGR03881 KaiC_arch_4 KaiC dom 97.9 6.4E-06 1.4E-10 85.8 2.2 39 522-560 16-55 (229)
491 TIGR03497 FliI_clade2 flagella 97.8 1.5E-05 3.3E-10 89.9 5.3 55 512-567 124-178 (413)
492 PF13555 AAA_29: P-loop contai 97.8 1.8E-05 4E-10 65.0 4.3 38 516-553 12-50 (62)
493 PRK09862 putative ATP-dependen 97.8 1.5E-05 3.3E-10 91.9 5.2 61 501-563 187-247 (506)
494 PLN03210 Resistant to P. syrin 97.8 5.4E-05 1.2E-09 96.8 10.5 43 518-560 199-242 (1153)
495 PRK09099 type III secretion sy 97.8 2.1E-05 4.6E-10 89.2 5.6 55 512-567 150-204 (441)
496 PF13558 SbcCD_C: Putative exo 97.8 3.5E-05 7.5E-10 68.6 5.8 48 689-736 30-90 (90)
497 cd01876 YihA_EngB The YihA (En 97.8 4.5E-05 9.7E-10 73.8 7.0 44 689-736 120-168 (170)
498 PRK14723 flhF flagellar biosyn 97.8 9.8E-05 2.1E-09 88.4 11.0 41 515-555 174-214 (767)
499 PRK10078 ribose 1,5-bisphospho 97.8 2E-05 4.3E-10 79.6 4.4 31 526-559 2-32 (186)
500 TIGR01026 fliI_yscN ATPase Fli 97.8 2.4E-05 5.2E-10 89.1 5.1 55 512-567 150-204 (440)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-85 Score=743.91 Aligned_cols=535 Identities=20% Similarity=0.249 Sum_probs=426.9
Q ss_pred HHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCh-HHHHHHHHHHHHHHHHHHH
Q 040758 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQ-EQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 132 ~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~-~~~~~~ll~~~~~~~~~~~ 209 (788)
..+++++.|++|+|+ +++..+++.++.+..++..|++.+.++|.+.. .+. ..+......+.++++++.+
T Consensus 133 ~~~~rl~~l~~~~~~---------~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~ 203 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWK---------WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGAL 203 (716)
T ss_pred hHHHHHHHHhchhHH---------HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998 37777777788888899999999999998766 222 3333333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh--cCCCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQ--SQSIIDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~--~~~~~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..++.++.. .....+...+|.++|.++. ...+||.. .+|++.|+..+...+...+...+..++
T Consensus 204 ~~~~r~~~~~---------~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~ 274 (716)
T KOG0058|consen 204 ANAIRGGLLQ---------YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLV 274 (716)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444433322 2233456778888888885 45667754 389999999999988888888899999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
..++.+++|++++|.|+++.++.+|+.+++..+++++.+++++..|++.++.+....|.+.+++|||+|+.|+.|.++|.
T Consensus 275 ~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~ 354 (716)
T KOG0058|consen 275 QGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYN 354 (716)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999997666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAF 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 442 (788)
++.++..+-..+.........+.+.....+..+..+.++++++..|.+|.|.+..++.+-..+...+..+...+..+...
T Consensus 355 ~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkg 434 (716)
T KOG0058|consen 355 KKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKG 434 (716)
T ss_pred HHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555554443333333333344444455555666677889999999999999887776666555555554444433333
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSL 521 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl 521 (788)
....+|+.++. |.++..+ .++...+....|.|+|+||+|+||++ +.++|+|+||
T Consensus 435 vGAs~rvFel~---dr~P~i~----------------------~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsf 489 (716)
T KOG0058|consen 435 VGASERVFELM---DRKPRIP----------------------LTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSF 489 (716)
T ss_pred cchHHHHHHHh---ccCCCCC----------------------CCCccccccccceEEEEEeeeecCCCCCchhhcCcee
Confidence 34445555543 2221110 11112222467899999999999975 3469999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|+|||++|||||||+||||+++||.+||+|++|+|++||.|.++++ ...+|++||+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~-----------------------~~~lr~~Ig~ 546 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN-----------------------HKYLRRKIGL 546 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC-----------------------HHHHHHHeee
Confidence 99999999999999999999999999999999999999776665553 3357889999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNS 681 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g 681 (788)
|.|||.||++||+|||.||....+++++.+|||.|++|+|++..+ +|
T Consensus 547 V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p---------------------------------~g 593 (716)
T KOG0058|consen 547 VGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFP---------------------------------DG 593 (716)
T ss_pred eeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc---------------------------------cc
Confidence 999999999999999999999999999999999999999886533 69
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|+|. ||+|.+|||||||||||||||++||.||||||||||||.++|..|+++|++ +++|||+||||+++++.||+|+
T Consensus 594 Y~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv 673 (716)
T KOG0058|consen 594 YNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV 673 (716)
T ss_pred cccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE
Confidence 9997 999999999999999999999999999999999999999999999999986 6999999999999999999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
|+++|+.
T Consensus 674 vi~~G~V 680 (716)
T KOG0058|consen 674 VIDKGRV 680 (716)
T ss_pred EEcCCeE
Confidence 9999975
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=9.7e-76 Score=688.42 Aligned_cols=535 Identities=21% Similarity=0.225 Sum_probs=417.7
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+.++++.+.+||+ .+.-+++.+++...++++.|++.+.++|.+. ..+.+.++...+.++++.++..++.
T Consensus 141 ~~~~f~~~~~~~~~---------~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~ 211 (709)
T COG2274 141 GLSWFIPLLFKYRR---------LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLR 211 (709)
T ss_pred chHhHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 46677788878876 3666777788888899999999999999754 4443333221111111111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.++.++...++ +.+...+....|.|+.++|. |++. .+|+ +|+++++++.++...+++..++..
T Consensus 212 ~lr~~~~~~~~---------~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~ 281 (709)
T COG2274 212 LLRTYLIAHLG---------KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFA 281 (709)
T ss_pred HHHHHHHHHHH---------HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 22344455677888887775 4422 2565 589999999888888888888888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+.++++|++++|+|++++++.+++++++..++.+.+++..++.-+..++..+.+.|+..++++||+.+.|.....++.++
T Consensus 282 ~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~ 361 (709)
T COG2274 282 LIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNR 361 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHH
Confidence 88888999999999999999999999999999999999998888888888899999999999999999998887666666
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
|.+..+...+..........+...+..+..++.+.++++++..|.+|+|.+.++.....++.+++..+...+..+.....
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~ 441 (709)
T COG2274 362 LAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKV 441 (709)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 65555443333322233334444445555666677788999999999999988888777888888777777777777777
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
..+|+.++. +.+.+.+.+. .....+...|.|+|+||+|+|+.++.++|+|+||+|+
T Consensus 442 ~~~rL~dil---~~~~E~~~~~---------------------~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~ 497 (709)
T COG2274 442 ALERLGDIL---DTPPEQEGDK---------------------TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIP 497 (709)
T ss_pred HHHHHHHHh---cCCccccccc---------------------ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeC
Confidence 788887654 3332211100 0112334678999999999998765679999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
|||++||||+||||||||+|+|+|+|+|++|+|++||.|..++ ++..+|++||||+|
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i-----------------------~~~~lR~~ig~V~Q 554 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI-----------------------DLASLRRQVGYVLQ 554 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc-----------------------CHHHHHhheeEEcc
Confidence 9999999999999999999999999999999999976654444 34467899999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT 684 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t 684 (788)
|++||+|||+|||++++++.+.+++.+||+.+++|+|+... |.||+|
T Consensus 555 ~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l---------------------------------P~gy~t 601 (709)
T COG2274 555 DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENL---------------------------------PMGYDT 601 (709)
T ss_pred cchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc---------------------------------cccccc
Confidence 99999999999999999998888999999999988876542 369999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. +|.|.+|||||||||+|||||++||+||||||||||||+++|+.|++.|.+ .|+|+|+||||++++++||||+||+
T Consensus 602 ~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~ 681 (709)
T COG2274 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLD 681 (709)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEcc
Confidence 7 999999999999999999999999999999999999999999999999987 5899999999999999999999999
Q ss_pred cCCCC
Q 040758 762 TVDQN 766 (788)
Q Consensus 762 ~g~~~ 766 (788)
+|+..
T Consensus 682 ~Gkiv 686 (709)
T COG2274 682 QGKIV 686 (709)
T ss_pred CCcee
Confidence 99863
No 3
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.3e-76 Score=699.16 Aligned_cols=538 Identities=20% Similarity=0.215 Sum_probs=377.3
Q ss_pred hHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHH
Q 040758 130 LNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTG-ISVGFNFLGRDFYNALADKDQEQFAKQ-LLYYLGAFAGG 207 (788)
Q Consensus 130 ~~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~-l~~~~~~l~~~iid~l~~~~~~~~~~~-ll~~~~~~~~~ 207 (788)
....+.+++++.+|+|+ ++++.+++.+..+ ...+++++++.++..+...+.+..... ..|.+++++++
T Consensus 648 ~~~s~~~i~k~~~pe~~----------~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~ 717 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWP----------YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLG 717 (1228)
T ss_pred ccccHHHHHHhccchhH----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 34568899999999998 3444444444444 445899999999998876654433222 22222222222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--hcCCCCCCch------hhHHHHHHHHHHHHHHHHHH
Q 040758 208 I---PFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKI--QSQSIIDNPD------QRIVDDLSSFTGTALSFSLT 276 (788)
Q Consensus 208 ~---~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l--~~~~~~~~~~------~Ri~~Dv~~v~~~~~~~~~~ 276 (788)
+ +..++..++... ....+...+|...|.++ |..+|||+|. +|+.+|+..++..+..-+..
T Consensus 718 ~~~~i~~~~q~~~f~~---------~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~ 788 (1228)
T KOG0055|consen 718 IVSGITNFLQHYFFGI---------AGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSL 788 (1228)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHH
Confidence 2 112222222111 11223445666666666 4577898874 69999999999876665556
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchH
Q 040758 277 LFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDN 356 (788)
Q Consensus 277 ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~ 356 (788)
++..+..++..+++-+.+.|.++++++..+|++++......+.+.....+..++..+-.....|+++|++||++|+.|++
T Consensus 789 vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~ 868 (1228)
T KOG0055|consen 789 VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEK 868 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Confidence 66666666666666677889999998888887777666666655555544444444444445899999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 357 EMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQF 436 (788)
Q Consensus 357 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~ 436 (788)
..+.|.+..++..+...+..........+...+.+....+.+.++.+++..|.+++..+...+.++..-...++.....+
T Consensus 869 ~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~ 948 (1228)
T KOG0055|consen 869 FMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYA 948 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88766666555555433332222211122222233333344555677888888888876543332221111111111111
Q ss_pred HHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccc
Q 040758 437 QAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATL 515 (788)
Q Consensus 437 ~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~v 515 (788)
..+........++. .++|.+... ++.+ +.....+..+|.|+|+||+|+||.++ .++
T Consensus 949 Pd~~ka~~Aa~~iF---~i~dr~~~i----------------~~~~----~~~~~~~~~~G~I~~~~V~F~YPsRP~~~I 1005 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIF---EILDRKPTI----------------DPDS----TSGGKLPNVKGDIEFRNVSFAYPTRPDVPV 1005 (1228)
T ss_pred cHHHHHHHHHHHHH---HHhcCCCCC----------------CCCC----CCCCccccceeEEEEeeeEeeCCCCCCchh
Confidence 22222233333332 333433211 1111 11122345678999999999999643 368
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++||++||||||||||||++.||.|||||++|.|.+||.|.+++ +++.+
T Consensus 1006 l~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l-----------------------nl~~L 1062 (1228)
T KOG0055|consen 1006 LNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL-----------------------NLKWL 1062 (1228)
T ss_pred hcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC-----------------------CHHHH
Confidence 9999999999999999999999999999999999999999999976665554 34467
Q ss_pred cceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccc
Q 040758 596 SRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 675 (788)
|++||+|.|||.||++||||||+||....+++++.+|||.|++|+|+...
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sL------------------------------ 1112 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSL------------------------------ 1112 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcC------------------------------
Confidence 89999999999999999999999995457888999999999999987653
Q ss_pred cccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhh
Q 040758 676 LPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYD 752 (788)
Q Consensus 676 ~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~ 752 (788)
|+||||. ||+|.+||||||||||||||++|||+||||||||||||.++|+.+|++|++ .|+|+|+||||+++++
T Consensus 1113 ---P~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq 1189 (1228)
T KOG0055|consen 1113 ---PQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ 1189 (1228)
T ss_pred ---cCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh
Confidence 3799997 999999999999999999999999999999999999999999999999987 6999999999999999
Q ss_pred cCCEEEEEccCCC
Q 040758 753 FHKRVLRISTVDQ 765 (788)
Q Consensus 753 ~~D~Ilvl~~g~~ 765 (788)
+||.|.|+++|+.
T Consensus 1190 naD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1190 NADVIAVLKNGKV 1202 (1228)
T ss_pred cCCEEEEEECCEE
Confidence 9999999999974
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-71 Score=656.55 Aligned_cols=528 Identities=18% Similarity=0.178 Sum_probs=370.8
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD--KDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~--~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
.+++++++++|||+ .+++.++++++..++.+..|++++.++|.+.. .+...+.. +++++++..++
T Consensus 9 ~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (588)
T PRK11174 9 LTRWLKQQSKPAKR---------WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLP----PFILLILLFVL 75 (588)
T ss_pred hhHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHH
Confidence 47889999999887 36666777778888888999999999997642 22222211 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++... +..+ ....+.+.+|..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++.
T Consensus 76 ~~~~~~~~~~----~~~~-~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~ 150 (588)
T PRK11174 76 RALLAWLRER----VGFK-AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLV 150 (588)
T ss_pred HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211 1111 2233567899999999988775 3332 3799999999998877667777777777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
.+..++++++++|++++++++..|+..++..++.++..+...+.++..+++...+.|.++++++||+|+.|+.+.+++.+
T Consensus 151 ~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 230 (588)
T PRK11174 151 PLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRS 230 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHH
Confidence 77777788899999999888888877777888888888877777788888888899999999999999999988865444
Q ss_pred HHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHH---HHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLE-FFTSGYRYLIQILP---AAVVAPMYFSGKIEFGVIN---------QSVSAFNHILGDFS 430 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~l~~~G~it~G~l~---------~~~~~~~~~~~~l~ 430 (788)
..++..+ ...+..+.. ........+..+.. .+++++ +..|.+|+|.+. ..+.+...+..++.
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~ 305 (588)
T PRK11174 231 ASEDFRQ----RTMEVLRMAFLSSAVLEFFASISIALVAVYFGF-SYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLR 305 (588)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccccccccchHHHHHHHHHHhHHHHHHHH
Confidence 4443333 222221111 11111111111111 112222 334788888641 11122233344455
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCC
Q 040758 431 LIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPT 510 (788)
Q Consensus 431 ~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~ 510 (788)
.+...+..+.......+|+.++.+. +..... . . ....+....+.|+|+||+|.|++
T Consensus 306 ~l~~~~~~~~~~~~~~~ri~~~l~~---~~~~~~-~-------------------~-~~~~~~~~~~~i~~~~vsf~~~~ 361 (588)
T PRK11174 306 DLGTFYHAKAQAVGAAESLVTFLET---PLAHPQ-Q-------------------G-EKELASNDPVTIEAEDLEILSPD 361 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCcccC-C-------------------C-ccccCCCCCceEEEEeeEEeccC
Confidence 5544444555556667777665432 111000 0 0 00000012346999999988764
Q ss_pred CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 511 ~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
++++|+|+||+|++||++|||||||||||||+++|+|+| |++|+|.+||.|..++
T Consensus 362 -~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~----------------------- 416 (588)
T PRK11174 362 -GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL----------------------- 416 (588)
T ss_pred -CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccC-----------------------
Confidence 467999999999999999999999999999999999999 9999999976654444
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
+.+.+|++|+||||+|+||++||+|||+|+.++.+. +++.++++.+
T Consensus 417 ~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~----------------------------------eei~~al~~a 462 (588)
T PRK11174 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASD----------------------------------EQLQQALENA 462 (588)
T ss_pred CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCH----------------------------------HHHHHHHHHh
Confidence 223567889999999999999999999998654444 4555555555
Q ss_pred cccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEec
Q 040758 671 KLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGH 746 (788)
Q Consensus 671 ~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaH 746 (788)
++++++.. ++||||. +|+|.+|||||||||+|||||++||+|||||||||+||+++|+.|++.|++ +++|+|+|||
T Consensus 463 ~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItH 542 (588)
T PRK11174 463 WVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542 (588)
T ss_pred CHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 55443333 4899996 999999999999999999999999999999999999999999999999976 6899999999
Q ss_pred CcchhhcCCEEEEEccCCCC
Q 040758 747 RRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 747 r~~~~~~~D~Ilvl~~g~~~ 766 (788)
|+++++.||+|++|++|+..
T Consensus 543 rl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 543 QLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred ChHHHHhCCEEEEEeCCeEe
Confidence 99999999999999999753
No 5
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.9e-71 Score=665.73 Aligned_cols=535 Identities=19% Similarity=0.248 Sum_probs=401.7
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADK-DQEQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~-~~~~~~~~ll~~~~~~~~~~~ 209 (788)
...+++++++++++|+ .++..+++.++.+++.+..|++++.++|.+... +.+.+.....+++++.++..+
T Consensus 146 ~~~~~~l~~~~~~~~~---------~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWP---------WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSV 216 (711)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999988876 366677777888888999999999999987643 433333222222211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..+..++. .+ ....+...+|..+|.++.+.+. +++. .+|+++|++.+...+...+..++..++
T Consensus 217 ~~~l~~~~~--------~~-~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 217 SAGLRGGSF--------NY-TMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred HHHHHHHHH--------HH-HHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222111 11 2223556788889999887765 4332 389999999999877777777778888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
.+++++++|+.++|++++++++..++.+++..+++++..+...+.++..++....+.|..+++++||+|+.|+.+.+++.
T Consensus 288 ~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~ 367 (711)
T TIGR00958 288 MLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367 (711)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHH
Confidence 88888888999999999998888888888888999988888888888888899889999999999999999999987666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAF 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 442 (788)
+..++..+...+..............+..+..++.+.++++++..|.+|+|.+.+++.++..+..++..+...+..+...
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~ 447 (711)
T TIGR00958 368 EALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQA 447 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554433332222222222333333444445556778889999999999888888888888888877777777777
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSL 521 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl 521 (788)
....+|+.++.+ .++..... +...+....+.|+|+||+|+||++ ++++|+|+||
T Consensus 448 ~~a~~ri~~~l~---~~~~~~~~----------------------~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl 502 (711)
T TIGR00958 448 VGASEKVFEYLD---RKPNIPLT----------------------GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTF 502 (711)
T ss_pred HHHHHHHHHHhC---CCCCCCCC----------------------CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceE
Confidence 777888766543 21110000 000111234579999999999853 3579999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|+|||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +...+|++|+|
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~ 559 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY-----------------------DHHYLHRQVAL 559 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc-----------------------CHHHHHhhceE
Confidence 9999999999999999999999999999999999999976554433 22356778999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LN 680 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~ 680 (788)
|||||++|++||+|||.|+.++.+ ++++.++++.+++++++++ ++
T Consensus 560 v~Q~~~lF~gTIreNI~~g~~~~~----------------------------------~e~i~~al~~a~l~~~i~~lp~ 605 (711)
T TIGR00958 560 VGQEPVLFSGSVRENIAYGLTDTP----------------------------------DEEIMAAAKAANAHDFIMEFPN 605 (711)
T ss_pred EecCccccccCHHHHHhcCCCCCC----------------------------------HHHHHHHHHHcCCHHHHHhCCC
Confidence 999999999999999999865433 3455566666666554444 47
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEE
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
|+||. +|+|.+|||||||||+|||||+++|+|||||||||+||+++|+.+++.....++|+|+||||+++++.||+|++
T Consensus 606 GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~Iiv 685 (711)
T TIGR00958 606 GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILV 685 (711)
T ss_pred ccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEE
Confidence 99996 89999999999999999999999999999999999999999999999333478999999999999999999999
Q ss_pred EccCCC
Q 040758 760 ISTVDQ 765 (788)
Q Consensus 760 l~~g~~ 765 (788)
|++|+.
T Consensus 686 L~~G~i 691 (711)
T TIGR00958 686 LKKGSV 691 (711)
T ss_pred EECCEE
Confidence 999875
No 6
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=1.2e-70 Score=657.84 Aligned_cols=515 Identities=18% Similarity=0.177 Sum_probs=382.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 235 (788)
++.+++++++...+.+..|++++.++|.+.. ++...++. +++.+++..++..+..++...+.. . ....+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~ 208 (686)
T TIGR03797 138 LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ----IALALLAAAVGAAAFQLAQSLAVL----R-LETRMD 208 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHH
Confidence 5666777788888899999999999997653 33222221 111111111111222222222111 1 223356
Q ss_pred HHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
..+|..+|+|+.+++. +++. .+|+. |++.+++.+.......+...+.++.++++|++++|++++++++..++
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 287 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALV 287 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999988775 3332 26876 78888887666555555555555666678888999999988888888
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSG 388 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (788)
.+++..++.++..+...+..+..++..+.+.|..+++++||+|+.|+.+.+++.+.+.+..+...+..............
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (686)
T TIGR03797 288 AIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAV 367 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87888888888888887788888888888999999999999999999887655555555444433333222222233333
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchh
Q 040758 389 YRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPL 468 (788)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~ 468 (788)
+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+......++|+.++.+. +.+...
T Consensus 368 i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~---~~e~~~---- 440 (686)
T TIGR03797 368 LPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEA---LPEVDE---- 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cccccc----
Confidence 3344444555667788889999999999888888888888887777777777777778887765332 111000
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 469 EKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+...+....+.|+|+||+|+|+++++++|+|+||+|++||++|||||||||||||+|+|+|
T Consensus 441 -------------------~~~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 441 -------------------AKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred -------------------CcCCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000112345799999999997556789999999999999999999999999999999999
Q ss_pred CCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccch
Q 040758 549 LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKP 628 (788)
Q Consensus 549 l~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~ 628 (788)
+|+|++|+|.+||.|..++ +.+.+|++||||||||++|++||+|||.++.+ .+
T Consensus 502 l~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~--- 554 (686)
T TIGR03797 502 FETPESGSVFYDGQDLAGL-----------------------DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LT--- 554 (686)
T ss_pred CCCCCCCEEEECCEEcCcC-----------------------CHHHHHhccEEEccCCccCcccHHHHHhcCCC-CC---
Confidence 9999999999976554443 22356788999999999999999999999754 33
Q ss_pred hhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 629 ASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 629 ~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
++++.++++.++++++.. .++||||. +|+|.+|||||||||+|||||
T Consensus 555 -------------------------------~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 555 -------------------------------LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred -------------------------------HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 345555556666554433 35899997 899999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++|++||||||||+||+++|+.+++.|++.++|+|+||||+++++.||+|++|++|+.
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~i 662 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRV 662 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999888999999999999999999999999975
No 7
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.2e-70 Score=660.53 Aligned_cols=539 Identities=17% Similarity=0.185 Sum_probs=397.5
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-EQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++++++ .++.+++++++...+.+..|++++.++|.+..... ..++. +++.+++..++.
T Consensus 141 ~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~ 207 (710)
T TIGR03796 141 LLRALWRRLRGSRG---------ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRP----LLLGMGLTALLQ 207 (710)
T ss_pred cHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHH----HHHHHHHHHHHH
Confidence 46778888888765 35566667777888888999999999997654322 21111 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++..++..+ ....+...++..+|.|+.+++. +++. .+|+.+| ..+++.+......++..++.+
T Consensus 208 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~ 281 (710)
T TIGR03796 208 GVLTWLQLYYLRR-----LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVML 281 (710)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222111 1223567788899999988775 3332 3788877 678877766667777777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+.++++|+.++|++++++++..++.+++..++.++..+...+.++..++..+.+.|..+++++||+++.|+.+.+++.+.
T Consensus 282 ~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~ 361 (710)
T TIGR03796 282 VFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGY 361 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHH
Confidence 77778889999999999988888888888888888888877778888888888999999999999999999888665555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
+.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.....
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~ 441 (710)
T TIGR03796 362 QAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEG 441 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443333222222223333333444445556677888999999999998888888888888877777777777778
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
.++|+.++.+..++.. ... ... ............+.|+++||+|+|++.++++|+|+||+|+
T Consensus 442 ~~~ri~~il~~~~e~~---~~~--------------~~~-~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~ 503 (710)
T TIGR03796 442 DLNRLDDVLRNPVDPL---LEE--------------EEA-PAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQ 503 (710)
T ss_pred HHHHHHHHHcCCCccc---ccc--------------ccc-cccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEc
Confidence 8888876543211110 000 000 0000000012346799999999998655789999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
+||++|||||||||||||+|+|+|+|+|++|+|.+||.|..++ +...+|++||||||
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEI-----------------------PREVLANSVAMVDQ 560 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHC-----------------------CHHHHHhheeEEec
Confidence 9999999999999999999999999999999999976554333 23356788999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLD 683 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~ 683 (788)
||++|++||+|||.++.++.+ ++++.++++.++++++.. .++|++
T Consensus 561 ~~~lf~gTi~eNi~l~~~~~~----------------------------------~~~i~~al~~~~l~~~i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLWDPTIP----------------------------------DADLVRACKDAAIHDVITSRPGGYD 606 (710)
T ss_pred CChhhhccHHHHhhCCCCCCC----------------------------------HHHHHHHHHHhCCHHHHHhCcCccc
Confidence 999999999999998754433 445555666666655443 348999
Q ss_pred cc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 684 TT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 684 t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
|. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|++.++|+|+||||+++++.||+|++|++
T Consensus 607 t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 607 AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLER 686 (710)
T ss_pred ceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 97 89999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCC
Q 040758 763 VDQ 765 (788)
Q Consensus 763 g~~ 765 (788)
|+.
T Consensus 687 G~i 689 (710)
T TIGR03796 687 GKV 689 (710)
T ss_pred CEE
Confidence 875
No 8
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.2e-70 Score=656.38 Aligned_cols=534 Identities=19% Similarity=0.222 Sum_probs=394.3
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++++|+ .+..+++++++..++.+..|++++.++|.+.. ++...++. +++.+++..++.
T Consensus 134 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~----~~~~~~~~~~~~ 200 (694)
T TIGR03375 134 PKHWFWSTLKESWP---------LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWV----LAIGVALAIVFD 200 (694)
T ss_pred cchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHH----HHHHHHHHHHHH
Confidence 45677888887776 35566677777888889999999999997653 33222211 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCC-CC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSII-DN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~~-~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
.+..++..++. .+ ....+...+|..+|.|+.+++.. ++ + .+|+ +|++.+++.+......++..++.++
T Consensus 201 ~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~ 274 (694)
T TIGR03375 201 FVLKTLRSYFL----DV-AGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL 274 (694)
T ss_pred HHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222222211 11 12235677899999999988762 22 1 2687 7999999877666566666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
.++++|++++|++++++++..++.+++..++.++..+...+..+..++..+.+.|..+++++||+|+.|+.+.+++.+.+
T Consensus 275 ~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 354 (694)
T TIGR03375 275 LFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTV 354 (694)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHH
Confidence 66778888999999999888888888888899999888888888888999999999999999999999998886555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+......
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~ 434 (694)
T TIGR03375 355 AALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTA 434 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333322222222222333333444445566778889999999999988888888888888777777777777777
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
.+|+.++.+. +.+.... ..........+.|+|+||+|+|+++++++|+|+||+|++
T Consensus 435 ~~ri~~il~~---~~e~~~~---------------------~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 435 LQSLDELMQL---PVERPEG---------------------TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHcC---CCCCCCC---------------------CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECC
Confidence 8887765432 2110000 000001123457999999999986556799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++|||||||||||||+|+|+|+|+|++|+|.+||.|..++ +...+|++|+|||||
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~-----------------------~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI-----------------------DPADLRRNIGYVPQD 547 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC-----------------------CHHHHHhccEEECCC
Confidence 999999999999999999999999999999999976544333 233567889999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t 684 (788)
+++|++||+|||.++.++.+. +++.++++.++++++... ++||||
T Consensus 548 ~~lf~~TI~eNi~~~~~~~~~----------------------------------~~i~~a~~~~~l~~~i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLFYGTLRDNIALGAPYADD----------------------------------EEILRAAELAGVTEFVRRHPDGLDM 593 (694)
T ss_pred hhhhhhhHHHHHhCCCCCCCH----------------------------------HHHHHHHHHcChHHHHHhCcccccc
Confidence 999999999999998654433 455555555555443333 489999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ .++|+|+||||+++++.||+|++|+
T Consensus 594 ~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~ 673 (694)
T TIGR03375 594 QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMD 673 (694)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEe
Confidence 7 899999999999999999999999999999999999999999999999976 5899999999999999999999999
Q ss_pred cCCCC
Q 040758 762 TVDQN 766 (788)
Q Consensus 762 ~g~~~ 766 (788)
+|+..
T Consensus 674 ~G~i~ 678 (694)
T TIGR03375 674 NGRIV 678 (694)
T ss_pred CCEEE
Confidence 98753
No 9
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.1e-70 Score=656.57 Aligned_cols=532 Identities=17% Similarity=0.180 Sum_probs=392.7
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKD-QEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~-~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++++++ .++.+++++++..++.+..|++++.++|.+.... ...++. +.+.+++..++.
T Consensus 143 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~----~~~~~~~~~~~~ 209 (708)
T TIGR01193 143 SLLKFIPLITRQKK---------LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGI----ISIGLIIAYIIQ 209 (708)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH----HHHHHHHHHHHH
Confidence 36677888877765 3566666677788888999999999999765432 222211 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++...+. ... ...+...+|..+|.|+.+++. +++. .+|++ |++.+++.+......++..++.+
T Consensus 210 ~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~ 283 (708)
T TIGR01193 210 QILSYIQIFLL----NVL-GQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWIL 283 (708)
T ss_pred HHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222211 111 223566788889999988775 4332 26887 88888887776666666666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+.++++|++++|++++++++..++.+++..++.++..+..++..+..++..+.+.|.++++++||+|+.|+.+.+++.+.
T Consensus 284 ~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 363 (708)
T TIGR01193 284 VIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSE 363 (708)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHH
Confidence 66677788899999999988888888888888999988888888888889999999999999999999999888666555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
+.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.....
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~ 443 (708)
T TIGR01193 364 FGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARV 443 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443333222222222223333344445556678889999999999998888888888888877777777777777
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
..+|+.++.+...+... .. .........+.|+++||+|+|++ ++++|+|+||+|+
T Consensus 444 ~~~ri~~~l~~~~e~~~---~~---------------------~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~ 498 (708)
T TIGR01193 444 ANNRLNEVYLVDSEFIN---KK---------------------KRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIK 498 (708)
T ss_pred HHHHHHHHHcCCCcccc---cc---------------------cccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEEC
Confidence 78888765432111100 00 00001123457999999999974 5689999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
+||++|||||||||||||+++|+|+|+|++|+|++||.|..++ +.+.+|++||||||
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~v~Q 555 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI-----------------------DRHTLRQFINYLPQ 555 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc-----------------------CHHHHHHheEEEec
Confidence 9999999999999999999999999999999999976554333 23356788999999
Q ss_pred ccccCCCCHHHHhcCCC-CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCc
Q 040758 605 RPYMVLGSLRQQLIYPT-WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSL 682 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~-~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~ 682 (788)
||++|++||+|||.++. +..+ ++++.++++.+++++++.. ++||
T Consensus 556 ~~~lf~gTI~eNi~l~~~~~~~----------------------------------~~~i~~a~~~a~l~~~i~~lp~gl 601 (708)
T TIGR01193 556 EPYIFSGSILENLLLGAKENVS----------------------------------QDEIWAACEIAEIKDDIENMPLGY 601 (708)
T ss_pred CceehhHHHHHHHhccCCCCCC----------------------------------HHHHHHHHHHhCCHHHHHhccccc
Confidence 99999999999999973 3333 3445555555555443333 4799
Q ss_pred ccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEecCcchhhcCCEEEEE
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
||. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ .|+|+|+||||+++++.||+|++|
T Consensus 602 dt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l 681 (708)
T TIGR01193 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVL 681 (708)
T ss_pred CcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEE
Confidence 996 899999999999999999999999999999999999999999999999986 589999999999999999999999
Q ss_pred ccCCC
Q 040758 761 STVDQ 765 (788)
Q Consensus 761 ~~g~~ 765 (788)
++|+.
T Consensus 682 ~~G~i 686 (708)
T TIGR01193 682 DHGKI 686 (708)
T ss_pred ECCEE
Confidence 99975
No 10
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=8.3e-70 Score=637.48 Aligned_cols=516 Identities=21% Similarity=0.250 Sum_probs=382.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
+.+.+++.++..++.+..|++.+.++|.+. .+.........++++++++..++.....+.. .+.. ..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~-~~~~~ 85 (567)
T COG1132 16 LLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLG--------SRLG-QKIVA 85 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHH
Confidence 556666677778889999999999999876 2222222222222222221111111111111 1121 34668
Q ss_pred HhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040758 237 YLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGG 309 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~ 309 (788)
.+|..+|.++++.+. +++. .+|+++|++.+...+......+...++.+++..++++.++|.+++++++..|+.
T Consensus 86 ~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 86 DLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 899999999998874 4432 379999999999876665444554677777777888889999999998888888
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040758 310 TAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGY 389 (788)
Q Consensus 310 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (788)
.++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.+..++..+...+...............
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877778888888888999999999999999999999998865443333333332222111111122222222
Q ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhh
Q 040758 390 RYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLE 469 (788)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~ 469 (788)
..+...+...++++.+..|.+++|.+..++.+...+..++..+...+..+.......+|+.++.+ .+.... +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~---~~~~~~--~--- 317 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD---EEPEVE--D--- 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcccc--C---
Confidence 33333344455667788899999999888888888887777776666666666667777765533 211100 0
Q ss_pred hhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 470 KICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
... ......+.|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+
T Consensus 318 ----------------~~~--~~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 318 ----------------PPD--PLKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred ----------------CCC--CCCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 000 01123456999999999974 56899999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchh
Q 040758 550 WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPA 629 (788)
Q Consensus 550 ~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~ 629 (788)
|+|++|+|++||.|..++ +.+.+|++|++||||++||++||+|||.||.++.+.+++
T Consensus 379 ~~~~~G~I~idg~dI~~i-----------------------~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 379 YDPTSGEILIDGIDIRDI-----------------------SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CCCCCCeEEECCEehhhc-----------------------CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 999999999966555444 234668889999999999999999999999887666677
Q ss_pred hHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHcc
Q 040758 630 SDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLS 708 (788)
Q Consensus 630 ~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~ 708 (788)
.+|||.+++++|+.. .|+||||. +|+|.+|||||||||+|||||++
T Consensus 436 ~~a~k~a~~~d~I~~---------------------------------lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 436 EEALKLANAHEFIAN---------------------------------LPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HHHHHHhChHHHHHh---------------------------------CcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 777776666555432 23799997 89999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||||||||+||+++|+.|++.+.+ +++|+|+||||+++++.||+|+||++|+.
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i 541 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRI 541 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999974 68999999999999999999999999974
No 11
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=3.2e-69 Score=634.72 Aligned_cols=536 Identities=15% Similarity=0.182 Sum_probs=391.5
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
++.+++++++++++++ .++..+++.++..++.+..|++++.++|.+...+...+. .++.+++++..++
T Consensus 10 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~---~~~~~~~~~~~l~ 77 (582)
T PRK11176 10 WQTFRRLWPTIAPFKA---------GLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVL---KWMPLVVIGLMIL 77 (582)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHH---HHHHHHHHHHHHH
Confidence 4556778888887765 244444555556666678899999999976543322111 1111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++..+ ...+... .+...+|..+|.++.+.+. +++. .+|+++|++.+...+......++..++.
T Consensus 78 ~~~~~~~~~~----~~~~~~~-~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 78 RGITSFISSY----CISWVSG-KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222111 1122222 3567789999999987765 3322 3799999999988777777778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
++.+++++++++|++++++++.+++.+++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 88888888899999999888887777777778888888877777888888888889999999999999999988765554
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+..+..............+..++.+.++++.+..|.+|+|.+.+++.++..+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333222222222333333333333444556677888999999998877777777777777776666666777
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
...+|+.++.+. ++.... +....+...+.|+++||+|+|+++++++|+|+||+|
T Consensus 313 ~~~~ri~~~~~~---~~~~~~-----------------------~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i 366 (582)
T PRK11176 313 AACQTLFAILDL---EQEKDE-----------------------GKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKI 366 (582)
T ss_pred HHHHHHHHHhcC---CCcCCC-----------------------CCcCCCCCCCeEEEEEEEEecCCCCCccccCceEEe
Confidence 777777655332 111000 000011123469999999999865578999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+++.|+|||
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~-----------------------~~~~~~~~i~~v~ 423 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY-----------------------TLASLRNQVALVS 423 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc-----------------------CHHHHHhhceEEc
Confidence 99999999999999999999999999999999999976554333 2234567799999
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSL 682 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~ 682 (788)
||+++|++||+|||.++.++ ..++++++++++.++++++.+. ++|+
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~---------------------------------~~~~~~i~~al~~~~l~~~i~~lp~Gl 470 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTE---------------------------------QYSREQIEEAARMAYAMDFINKMDNGL 470 (582)
T ss_pred cCceeecchHHHHHhcCCCC---------------------------------CCCHHHHHHHHHHhCcHHHHHhccccc
Confidence 99999999999999997532 1245667777777777665554 4899
Q ss_pred ccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
||. +++|.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|.+ +++|+|+||||++.++.||+|++
T Consensus 471 dt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~ 550 (582)
T PRK11176 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILV 550 (582)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE
Confidence 996 899999999999999999999999999999999999999999999999976 58999999999999999999999
Q ss_pred EccCCC
Q 040758 760 ISTVDQ 765 (788)
Q Consensus 760 l~~g~~ 765 (788)
|++|+.
T Consensus 551 l~~g~i 556 (582)
T PRK11176 551 VEDGEI 556 (582)
T ss_pred EECCEE
Confidence 999864
No 12
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=7.1e-69 Score=624.81 Aligned_cols=516 Identities=19% Similarity=0.146 Sum_probs=356.9
Q ss_pred HHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 135 RRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLR 214 (788)
Q Consensus 135 ~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 214 (788)
++++++.+++++ .+++.++++++.+++.+..|++++.++|.+...+. .+. ....++.+++..+...+.
T Consensus 2 ~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 69 (529)
T TIGR02868 2 LRILPLLQPRTR---------RLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLY--LSVAAVAVRAFGIGRAVF 69 (529)
T ss_pred hhHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH--HHHHHHHHHHHHHHHHHH
Confidence 356677777765 35556666777788888999999999997654332 111 111111111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 215 DYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISF 287 (788)
Q Consensus 215 ~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~ 287 (788)
.++... +.... ...+...+|.++|.|+.+.+. +++. .+|+++|++.+...+......++..++.++++
T Consensus 70 ~~~~~~----~~~~~-~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~ 144 (529)
T TIGR02868 70 RYLERL----VGHDA-ALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAA 144 (529)
T ss_pred HHHHHH----HHHHH-HHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 11122 223557899999999988775 3321 37999999999987776666777777777777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh-hhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHH
Q 040758 288 SNILYGIYPPLFVVLLVYSIGGTAISIYLGKGL-VTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFR 366 (788)
Q Consensus 288 ~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~ 366 (788)
+++++.++|++++++++..++..++..++.++. ++..+..++..+++.+.+.|..+++++||+|+.|+.+.+++.+..+
T Consensus 145 ~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~ 224 (529)
T TIGR02868 145 VAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADR 224 (529)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHH
Confidence 778889999998888777666655554444443 4444555667778888889999999999999999988765444433
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 367 SAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVI 446 (788)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 446 (788)
+..+...+.................+..++.++++++++..|.+|+|.+.+++.+...+..++..+...+..+.......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (529)
T TIGR02868 225 ELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAA 304 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222211111111122222222233334456677889999999988777766666666666655555666666777
Q ss_pred HHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCC
Q 040758 447 DRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEK 526 (788)
Q Consensus 447 ~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~G 526 (788)
+|+.++.+. +....... . . .........+.|+|+||+|+|++ ++++|+|+||+|++|
T Consensus 305 ~ri~~~l~~---~~~~~~~~--------------~----~-~~~~~~~~~~~I~~~~vsf~Y~~-~~~vL~~isl~i~~G 361 (529)
T TIGR02868 305 ERIEEVTGA---KGPRPEGV--------------V----P-AAGALGLGKPTLELRDLSFGYPG-SPPVLDGVSLDLPPG 361 (529)
T ss_pred HHHHHHhcC---CCCcCCCC--------------C----C-CCcccCCCCceEEEEEEEEecCC-CCceeecceEEEcCC
Confidence 787665432 11100000 0 0 00000112346999999999975 457999999999999
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcccc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~ 606 (788)
|++|||||||||||||+++|+|+|+|++|+|.+||.|..+ . .+.+|++|+||||+|
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~-----------------------~-~~~lr~~i~~V~Q~~ 417 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS-----------------------L-QDELRRRISVFAQDA 417 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh-----------------------H-HHHHHhheEEEccCc
Confidence 9999999999999999999999999999999996443221 1 235678899999999
Q ss_pred ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc
Q 040758 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT 685 (788)
Q Consensus 607 ~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~ 685 (788)
++|++||+|||+|+.++.+ ++++.++++.++++++..+ ++||||.
T Consensus 418 ~lF~~TI~eNI~~g~~~~~----------------------------------~e~i~~al~~a~l~~~i~~lp~GldT~ 463 (529)
T TIGR02868 418 HLFDTTVRDNLRLGRPDAT----------------------------------DEELWAALERVGLADWLRSLPDGLDTV 463 (529)
T ss_pred ccccccHHHHHhccCCCCC----------------------------------HHHHHHHHHHcCCHHHHHhCcccccch
Confidence 9999999999999865433 4455556666666554443 4899997
Q ss_pred -ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCc
Q 040758 686 -YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRR 748 (788)
Q Consensus 686 -~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~ 748 (788)
+|+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.+.+ .++|+|+||||+
T Consensus 464 ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 464 LGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred hccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999976 589999999995
No 13
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.7e-68 Score=624.79 Aligned_cols=529 Identities=20% Similarity=0.211 Sum_probs=371.4
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCh--HHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQ--EQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~--~~~~~~ll~~~~~~~~~~~~ 210 (788)
+++++++++++|+ .+++.++++++..++.+..|++.+.++|... .+.. ..+. ..+.++.+++..+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 72 (574)
T PRK11160 4 LLPFLKLYKRHWF---------MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN--YMLPAAGVRGAAIG 72 (574)
T ss_pred hHHHHHHHhhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH--HHhHHHHHHHHHHH
Confidence 4457778888876 3666677777788888899999999999643 3221 0111 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++.. .+... ....+...+|.++|+|+.+++. +++ + .+|+++|++.++..+...+..++..++.
T Consensus 73 ~~~~~~~~~----~~~~~-~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 73 RTAGRYGER----LVSHD-ATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222221 11112 2233567899999999998775 332 2 3899999999999877777777888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTA-ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
+++.+++|++++|++++++++..++..+ +..++.++..+..++.++..+++...+.|..+++++||+|+.|+.+.+++
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~- 226 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQL- 226 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHH-
Confidence 8878888999999999888766665544 34566677677777778888899999999999999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEF----FTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHI-LGDFSLIVYQFQ 437 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~-~~~l~~~~~~~~ 437 (788)
++..+++.+...+..+... .......+..++.+.+++++ ..|.+|+|.+.+++.+.... ..++..+...+.
T Consensus 227 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~ 302 (574)
T PRK11160 227 ---EQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQ 302 (574)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333332222221 11111222222223334444 57889999876654432111 122222333334
Q ss_pred HHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCcccee
Q 040758 438 AISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVR 517 (788)
Q Consensus 438 ~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~ 517 (788)
.+.......+|+.++.+ .+.+.... ... ......+.|+|+||+|+|+++++++|+
T Consensus 303 ~~~~~~~s~~ri~~ll~---~~~~~~~~---------------------~~~-~~~~~~~~i~~~~v~f~y~~~~~~il~ 357 (574)
T PRK11160 303 HLGQVIASARRINEITE---QKPEVTFP---------------------TTS-TAAADQVSLTLNNVSFTYPDQPQPVLK 357 (574)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCCCCC---------------------ccc-CCCCCCCeEEEEEEEEECCCCCCccee
Confidence 44455666777765533 21110000 000 001123579999999999864467999
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+|+
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~-----------------------~~~~~r~ 414 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADY-----------------------SEAALRQ 414 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC-----------------------CHHHHHh
Confidence 99999999999999999999999999999999999999999976554333 2235678
Q ss_pred eEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 598 GVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
+|+||||||++|++||+|||+++.++. +++++.++++.++++++.+
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~----------------------------------~~~~i~~al~~~~l~~~i~ 460 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNA----------------------------------SDEALIEVLQQVGLEKLLE 460 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCcc----------------------------------CHHHHHHHHHHcCCHHHHc
Confidence 899999999999999999999976432 3456777777777765444
Q ss_pred cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcC
Q 040758 678 RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFH 754 (788)
Q Consensus 678 ~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~ 754 (788)
.++||||. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ +++|+|+||||+++++.|
T Consensus 461 ~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~ 540 (574)
T PRK11160 461 DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540 (574)
T ss_pred CccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhC
Confidence 47899997 999999999999999999999999999999999999999999999999976 589999999999999999
Q ss_pred CEEEEEccCCC
Q 040758 755 KRVLRISTVDQ 765 (788)
Q Consensus 755 D~Ilvl~~g~~ 765 (788)
|+|++|++|+.
T Consensus 541 d~i~~l~~G~i 551 (574)
T PRK11160 541 DRICVMDNGQI 551 (574)
T ss_pred CEEEEEeCCeE
Confidence 99999999975
No 14
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.6e-68 Score=605.09 Aligned_cols=546 Identities=40% Similarity=0.674 Sum_probs=480.3
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
...++++|.+.++||.++..+..+..++.+++++++.+.+++++..+.+.++|++...|...|+..+..+.++.++.+++
T Consensus 23 ~~~~~qfw~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~ 102 (604)
T COG4178 23 TSLGRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLL 102 (604)
T ss_pred hHHHHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999888988887777777766777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQ---SIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISF 287 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~---~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~ 287 (788)
.+...|+...+..+||.|++.+++.+||.+..||+++.. ...||||||+.+|+..+.+....+..+++..+++++++
T Consensus 103 ~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF 182 (604)
T COG4178 103 NVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISF 182 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999765 44699999999999999998888999999999999999
Q ss_pred HHHHHhh---------------hhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhcc
Q 040758 288 SNILYGI---------------YPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYA 352 (788)
Q Consensus 288 ~~il~~~---------------~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~ 352 (788)
.++||.+ ...++++++++++...+++.+++|++.+++.++++.|+++++.+++..+|.+.|.+|+
T Consensus 183 ~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~ 262 (604)
T COG4178 183 TGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYR 262 (604)
T ss_pred HHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 9998843 3456778888999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Q 040758 353 GEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLI 432 (788)
Q Consensus 353 ~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~ 432 (788)
+|+.|++.+.++|....+++.+......++.++...|+.+..+++..++++.++.|.+++|.+++..++|.++.+.++++
T Consensus 263 GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 263 GEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888899999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC
Q 040758 433 VYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK 512 (788)
Q Consensus 433 ~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~ 512 (788)
+..+..++...+...|+.++...++........... .. ......... ...|+++|++..-|+ +
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~--------------~~-~~~~~~~~~-~~~i~~~nl~l~~p~-~ 405 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPAR--------------TG-RRIDFDDNA-DHGITLENLSLRTPD-G 405 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCc--------------cc-ccccccccc-cceeEEeeeeEECCC-C
Confidence 999999999999999999998766532211100000 00 000000011 457999999999986 5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
+..|+++||+|++||.+.|.||||||||||+|.|+|+||..+|+|.+.
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-------------------------------- 453 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-------------------------------- 453 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------------------------------
Confidence 588999999999999999999999999999999999999999999751
Q ss_pred ccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 593 NRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
....+.|+||.||+..||+||.|+||.... ..+++++.++|.++++
T Consensus 454 --~~~~~lflpQ~PY~p~GtLre~l~YP~~~~--------------------------------~~~d~~l~~vL~~vgL 499 (604)
T COG4178 454 --ADSALLFLPQRPYLPQGTLREALCYPNAAP--------------------------------DFSDAELVAVLHKVGL 499 (604)
T ss_pred --CCCceEEecCCCCCCCccHHHHHhCCCCCC--------------------------------CCChHHHHHHHHHcCc
Confidence 013489999999999999999999986542 1467899999999999
Q ss_pred ccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcch
Q 040758 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTL 750 (788)
Q Consensus 673 ~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~ 750 (788)
+++.+++ +....|...||+|||||||+||.|+++|++++|||+|||||+++|..+++.+++ .+.|+|.|+||.++
T Consensus 500 ~~L~~rl---~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl 576 (604)
T COG4178 500 GDLAERL---DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL 576 (604)
T ss_pred HHHHHHH---hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh
Confidence 9988875 445568888999999999999999999999999999999999999999999998 79999999999999
Q ss_pred hhcCCEEEEEcc
Q 040758 751 YDFHKRVLRIST 762 (788)
Q Consensus 751 ~~~~D~Ilvl~~ 762 (788)
..++++.+.+.+
T Consensus 577 ~~~h~~~l~l~~ 588 (604)
T COG4178 577 WNFHSRQLELLD 588 (604)
T ss_pred HHHHhhheeecc
Confidence 999999888865
No 15
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=5e-68 Score=623.22 Aligned_cols=531 Identities=17% Similarity=0.184 Sum_probs=399.6
Q ss_pred HHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHH
Q 040758 135 RRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-EQFAKQLLYYLGAFAGGIPFFVL 213 (788)
Q Consensus 135 ~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~~~~~~ll~~~~~~~~~~~~~~~ 213 (788)
+.++++++++|+ .+++.++++++..++.+..|++++.++|....... ..+. ++.+++++..++..+
T Consensus 3 ~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~i~~~~ 69 (571)
T TIGR02203 3 RRLWSYVRPYKA---------GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLW----WVPLVVIGLAVLRGI 69 (571)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHH----HHHHHHHHHHHHHHH
Confidence 456666666655 36666667777778888999999999996544332 2211 111111111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 214 RDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLIS 286 (788)
Q Consensus 214 ~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~ 286 (788)
..++..++.. .....+...+|..+|+++.+.+. +++. .+|+++|++.+..........++..++.++.
T Consensus 70 ~~~~~~~~~~-----~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~ 144 (571)
T TIGR02203 70 CSFVSTYLLS-----WVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIG 144 (571)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 12233567788889999887765 3322 3799999999998877777788888888888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHH
Q 040758 287 FSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFR 366 (788)
Q Consensus 287 ~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~ 366 (788)
+++++++++|++++++++..++.+++..++.++..+...+..+..+++.+.+.+..+|+++||.++.|+.+.+++.+.++
T Consensus 145 ~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~ 224 (571)
T TIGR02203 145 LFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSN 224 (571)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHH
Confidence 88889999999999998888888888889999998888888888899999999999999999999999988765555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 367 SAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVI 446 (788)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 446 (788)
+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~ 304 (571)
T TIGR02203 225 RNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAA 304 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333322222222333333334444555667788889999999999998888888888888877777777778888
Q ss_pred HHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCC
Q 040758 447 DRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEK 526 (788)
Q Consensus 447 ~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~G 526 (788)
+|+.++.+. +..... +........+.|+++||+|+|++.++++|+|+||+|++|
T Consensus 305 ~ri~~~l~~---~~~~~~-----------------------~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G 358 (571)
T TIGR02203 305 ESLFTLLDS---PPEKDT-----------------------GTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPG 358 (571)
T ss_pred HHHHHHHcC---CCCCCC-----------------------CCCCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCC
Confidence 887665332 111000 000001123569999999999865568999999999999
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcccc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~ 606 (788)
|+++|+|+||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+|++|+||||+|
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~-----------------------~~~~~~~~i~~v~Q~~ 415 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY-----------------------TLASLRRQVALVSQDV 415 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc-----------------------CHHHHHhhceEEccCc
Confidence 99999999999999999999999999999999965543333 2234567899999999
Q ss_pred ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc
Q 040758 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT 685 (788)
Q Consensus 607 ~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~ 685 (788)
++|++|++|||.++++. ..+++++.++++.++++++..+ ++|+||.
T Consensus 416 ~lf~~Ti~~Ni~~~~~~---------------------------------~~~~~~i~~~l~~~~l~~~i~~lp~gldt~ 462 (571)
T TIGR02203 416 VLFNDTIANNIAYGRTE---------------------------------QADRAEIERALAAAYAQDFVDKLPLGLDTP 462 (571)
T ss_pred ccccccHHHHHhcCCCC---------------------------------CCCHHHHHHHHHHcChHHHHHhCcCcccce
Confidence 99999999999997531 1245677788888888766555 4899997
Q ss_pred -ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 686 -YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 686 -~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
+++|.+|||||||||+||||++++|+|++||||||+||+++|+.+.+.|.+ +++|+|+||||++..+.||+|++|++
T Consensus 463 i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDD 542 (571)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999976 58999999999999999999999999
Q ss_pred CCC
Q 040758 763 VDQ 765 (788)
Q Consensus 763 g~~ 765 (788)
|+.
T Consensus 543 g~i 545 (571)
T TIGR02203 543 GRI 545 (571)
T ss_pred CEE
Confidence 864
No 16
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.9e-68 Score=672.73 Aligned_cols=533 Identities=18% Similarity=0.170 Sum_probs=359.4
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-H-HHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-E-QFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~-~~~~~ll~~~~~~~~~~~~ 210 (788)
.++++++++++|++ .+++.++++++..++..++|++++.++|.+..... . ......++++++.++..++
T Consensus 812 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 882 (1466)
T PTZ00265 812 NLRIVYREIFSYKK---------DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFIS 882 (1466)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777765 24455555666777788999999999997653211 1 0111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-------DQRIVDDLSSFTGTALSFSLTLFNAA 281 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-------~~Ri~~Dv~~v~~~~~~~~~~ii~~~ 281 (788)
.++..++ ..+... .+.+.+|..+|.++.+++. |+++ .+|+++|++.++..+...+..++..+
T Consensus 883 ~~l~~~~--------~~~~~~-~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i 953 (1466)
T PTZ00265 883 ETLKNYY--------NNVIGE-KVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFI 953 (1466)
T ss_pred HHHHHHH--------HHHHHH-HHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 222222 3567899999999987664 6531 27999999999987776666777777
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHh-HH-----------------HHHHHHHHHhHHHHHHH
Q 040758 282 VDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLN-FL-----------------QEKKEADFRYGLVRVRE 343 (788)
Q Consensus 282 i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~-~~-----------------~~~~~~~~~~~~~~~~~ 343 (788)
+.+++.++++++++|++++++++. +.++...+.++.+... .. .++..++....+.|.+.
T Consensus 954 ~~~i~~~~~~~~~~~~l~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~ 1030 (1466)
T PTZ00265 954 VLFLVSMVMSFYFCPIVAAVLTGT---YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFY 1030 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 777777777888888887765432 2333334444332211 11 11223455666789999
Q ss_pred hHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 040758 344 NAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFN 423 (788)
Q Consensus 344 ~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~ 423 (788)
++++||+|+.|+++.+++.+..+...+...+..........+......+..++.++++++++..|.+|+|.+.+++.++.
T Consensus 1031 gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~ 1110 (1466)
T PTZ00265 1031 NMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFL 1110 (1466)
T ss_pred cHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999988765544443333222222111111122222223333444556677888999999999876654433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEee
Q 040758 424 HILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIED 503 (788)
Q Consensus 424 ~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 503 (788)
.....+..+...+..+.......+|+.++. +.+...+..+ .. ......+....+.|+|+|
T Consensus 1111 ~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll---~~~~~~~~~~--------------~~---~~~~~~~~~~~g~I~f~n 1170 (1466)
T PTZ00265 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLI---IRKSNIDVRD--------------NG---GIRIKNKNDIKGKIEIMD 1170 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCC--------------Cc---ccccccCCCCCceEEEEE
Confidence 222223333333444555666677766543 2221100000 00 000000112346799999
Q ss_pred eEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------
Q 040758 504 LTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD------------------------------ 552 (788)
Q Consensus 504 vsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p------------------------------ 552 (788)
|+|+||++ +.++|+|+||+|++|+++|||||||||||||++||+|||+|
T Consensus 1171 VsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 (1466)
T PTZ00265 1171 VNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNV 1250 (1466)
T ss_pred EEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccc
Confidence 99999853 35799999999999999999999999999999999999999
Q ss_pred ------------------------CCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcccccc
Q 040758 553 ------------------------GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM 608 (788)
Q Consensus 553 ------------------------~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l 608 (788)
++|+|++||.|..++ +.+.+|++||||||+|+|
T Consensus 1251 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~-----------------------~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1251 GMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY-----------------------NLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred ccccccccccccccccccccccCCCCCeEEECCEEHHhC-----------------------CHHHHHhhccEeCCCCcc
Confidence 699999976655444 233568889999999999
Q ss_pred CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-cc
Q 040758 609 VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YE 687 (788)
Q Consensus 609 f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e 687 (788)
|++||+|||+||.++.+.+++.+|++.+++++|+.. .|+||||. +|
T Consensus 1308 F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~---------------------------------LP~GydT~VGe 1354 (1466)
T PTZ00265 1308 FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIES---------------------------------LPNKYDTNVGP 1354 (1466)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh---------------------------------CccccCCccCC
Confidence 999999999999766666666666666666555432 24799997 99
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
+|.+|||||||||||||||+++|+||||||||||||+++|+.|+++|.+ .++|+|+||||+++++.||+|+||++
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999975 38999999999999999999999999
No 17
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-67 Score=613.84 Aligned_cols=512 Identities=18% Similarity=0.192 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALA-DK-DQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 234 (788)
+.+.++++++.+++.+..|++.+.++|.+. .. +...+. .+++.+++..++..+..++..++. .. ....+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~ 75 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELL----PALGALALAVLLRALLGWLGERAA----AR-AAAAV 75 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHH
Confidence 556667778888889999999999999874 32 222221 111111111111122222222211 11 12235
Q ss_pred HHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
.+.+|..+|.++.+.+. +++. .+|+++|++.+...+...+..++..++.++.++++++.++|++++++++..+
T Consensus 76 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~ 155 (529)
T TIGR02857 76 KSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAP 155 (529)
T ss_pred HHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67889999999988765 3321 3799999999998776666666766666666777788889998888887777
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
+..++..++.++..+...+.++..+++.+.+.|..+++++||+|+.|+.+.+++.+..++..+...+..+..........
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02857 156 LIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLE 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77677777778777777777778888888889999999999999999988765544433333322222221111122222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCch
Q 040758 388 GYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~ 467 (788)
....+..++..+++++.++.|.+|+|.+.++..++..+..++..+...+..+......++|+.++.+ .+.... .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~---~~~~~~--~- 309 (529)
T TIGR02857 236 LFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLD---APRPLA--G- 309 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccC--C-
Confidence 2222223333334556667899999998877777777777777766666666677777777766533 111000 0
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
. ...+ ....+.|+++||+|+||++++++|+|+||+|++||++|||||||||||||+|+|+
T Consensus 310 ------------------~-~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 310 ------------------K-APVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL 369 (529)
T ss_pred ------------------C-cCCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 0000 0112469999999999864457999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccc
Q 040758 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK 627 (788)
Q Consensus 548 gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~ 627 (788)
|+|+|++|+|.+||.+..++ +.+.+|++++||+|+|++|++||+|||.++.+..
T Consensus 370 g~~~~~~G~I~~~g~~i~~~-----------------------~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~--- 423 (529)
T TIGR02857 370 GFVDPTEGSIAVNGVPLADA-----------------------DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA--- 423 (529)
T ss_pred cCCCCCCcEEEECCEehhhC-----------------------CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC---
Confidence 99999999999965544333 2235677899999999999999999999975432
Q ss_pred hhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHH
Q 040758 628 PASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARL 705 (788)
Q Consensus 628 ~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARA 705 (788)
+++++.++++.++++++.++ ++||||. +|+|.+||||||||++||||
T Consensus 424 -------------------------------~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 424 -------------------------------SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred -------------------------------CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 34566666777776655544 4899997 89999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 706 LLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 706 Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
|+++|+++|||||||+||+++|+.+++.+.+ .++|+|+||||+++++.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999976 689999999999999999999986
No 18
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.2e-67 Score=632.57 Aligned_cols=532 Identities=17% Similarity=0.166 Sum_probs=391.4
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
+++++++++++++ .+..+++++++..++.+..|++++.++|.+.. .+...+.. +++.+++..++..
T Consensus 127 ~~~~~~~~~~~~~---------~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~----l~~~~~~~~~~~~ 193 (694)
T TIGR01846 127 FSWFIPAIIRYRK---------QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSV----LALAMLAVAIFEP 193 (694)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHH----HHHHHHHHHHHHH
Confidence 5677777777655 35566677777888889999999999997653 33222211 1111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
+..++..++ ...+ ...+...+|..+|.|+.+++. +++. .+|+ +|++.+++.+......++..++.++
T Consensus 194 ~~~~l~~~~----~~~~-~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~ 267 (694)
T TIGR01846 194 ALGGLRTYL----FAHL-TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVV 267 (694)
T ss_pred HHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 1222 233567789999999988775 4432 2788 6999999877666666665555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
.++++|++++|++++++++.+++++++..++.+++.+......++.++..+.+.|..+++++||+|+.|+.+.+++.+.+
T Consensus 268 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~ 347 (694)
T TIGR01846 268 VFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQL 347 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHH
Confidence 56678888999999998888888888888888888877777777888888888999999999999999998886555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..+...+..++..+...+..+......
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~ 427 (694)
T TIGR01846 348 AAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIA 427 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333322222222222233333444444556778889999999999888888888888887777777777777777
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
++|+.++.+. +.+.... .....+...+.|+++||+|+|+++++++|+|+||+|++
T Consensus 428 ~~ri~~~l~~---~~e~~~~----------------------~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 428 LERLGDILNS---PTEPRSA----------------------GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHcC---CCCccCC----------------------CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECC
Confidence 8887765432 1110000 00001123457999999999976556799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++||||+||||||||+|+|+|+|+|++|+|++||.+..++ +.+.+|++|+||||+
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~-----------------------~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA-----------------------DPAWLRRQMGVVLQE 539 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhC-----------------------CHHHHHHhCeEEccC
Confidence 999999999999999999999999999999999976554433 223457789999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t 684 (788)
+++|++||+|||.++.+.. +++++.++++.++++++..+ ++|+||
T Consensus 540 ~~lf~~ti~eNi~~~~~~~----------------------------------~~~~i~~a~~~~~l~~~i~~lp~gl~t 585 (694)
T TIGR01846 540 NVLFSRSIRDNIALCNPGA----------------------------------PFEHVIHAAKLAGAHDFISELPQGYNT 585 (694)
T ss_pred CeehhhhHHHHHhcCCCCC----------------------------------CHHHHHHHHHHcChHHHHHhCcCccCc
Confidence 9999999999999975433 34556666666666554443 489999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. ++.|.+||||||||++|||||+++|++||||||||+||+++|+.+.+.|++ .++|+|+||||+++++.||+|++|+
T Consensus 586 ~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~ 665 (694)
T TIGR01846 586 EVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLE 665 (694)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEe
Confidence 7 899999999999999999999999999999999999999999999999976 5899999999999999999999999
Q ss_pred cCCCC
Q 040758 762 TVDQN 766 (788)
Q Consensus 762 ~g~~~ 766 (788)
+|+..
T Consensus 666 ~G~i~ 670 (694)
T TIGR01846 666 KGQIA 670 (694)
T ss_pred CCEEE
Confidence 99753
No 19
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=5.3e-67 Score=616.25 Aligned_cols=532 Identities=17% Similarity=0.176 Sum_probs=382.2
Q ss_pred HHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 132 ~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
..++++++++++++. .+.+.++++++..++.+..|++++.++|.+..+. .+....+.+++++ ++.
T Consensus 5 ~~~~~l~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~----~~~ 69 (588)
T PRK13657 5 RLYARVLQYLGAEKR---------LGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGFG----LFN 69 (588)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHH----HHH
Confidence 345666677766654 3566667777788888999999999999876432 1111111111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++...+. .+.. +.+...++..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++..
T Consensus 70 ~~~~~~~~~~~----~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~ 144 (588)
T PRK13657 70 IIAGVLVARHA----DRLA-HRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVAL 144 (588)
T ss_pred HHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112111111 1111 22344566788999988775 3322 37999999998876665666666666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+..+++++.++|++++++++..++..++..++.++..+.....++..+++...+.+..+++++||.|+.++.+.+++.+.
T Consensus 145 ~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~ 224 (588)
T PRK13657 145 VVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDI 224 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHH
Confidence 66667778889999988888878877788888888877777777778888888899999999999999999888655555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
.++..+...+.................+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~ 304 (588)
T PRK13657 225 ADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAP 304 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433332222222222223333344445556677888999999999988888877777777766655555544445
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
..+++.++ ++.+...+.. .+....+...+.|+++||+|+||+ ++++|+|+||+++
T Consensus 305 ~~~~i~~l---~~~~~~~~~~---------------------~~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~inl~i~ 359 (588)
T PRK13657 305 KLEEFFEV---EDAVPDVRDP---------------------PGAIDLGRVKGAVEFDDVSFSYDN-SRQGVEDVSFEAK 359 (588)
T ss_pred HHHHHHHH---hCCCcccCCC---------------------CCCCCcCCCCCeEEEEEEEEEeCC-CCceecceeEEEC
Confidence 55554433 2221110000 000001112346999999999974 4579999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
|||+++|||+||||||||+|+|+|+|+|++|+|.+||.+..++ +...+|+.|+||||
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~-----------------------~~~~~r~~i~~v~Q 416 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV-----------------------TRASLRRNIAVVFQ 416 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC-----------------------CHHHHHhheEEEec
Confidence 9999999999999999999999999999999999976554433 22345778999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLD 683 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~ 683 (788)
+|++|++||+|||+++.++. +++++.++++.++++++..+ ++|+|
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~----------------------------------~d~~i~~al~~~~l~~~i~~lp~gld 462 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDA----------------------------------TDEEMRAAAERAQAHDFIERKPDGYD 462 (588)
T ss_pred CcccccccHHHHHhcCCCCC----------------------------------CHHHHHHHHHHhCHHHHHHhCccccc
Confidence 99999999999999975432 34567777777777665554 58999
Q ss_pred cc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 684 TT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 684 t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
|. +++|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ .++|+|+||||++.++.||+|++|
T Consensus 463 t~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l 542 (588)
T PRK13657 463 TVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVF 542 (588)
T ss_pred chhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEE
Confidence 96 899999999999999999999999999999999999999999999999976 589999999999999999999999
Q ss_pred ccCCC
Q 040758 761 STVDQ 765 (788)
Q Consensus 761 ~~g~~ 765 (788)
++|+.
T Consensus 543 ~~G~i 547 (588)
T PRK13657 543 DNGRV 547 (588)
T ss_pred ECCEE
Confidence 99975
No 20
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.7e-67 Score=617.29 Aligned_cols=532 Identities=17% Similarity=0.190 Sum_probs=375.2
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~ 209 (788)
++.++++.++.+++|+ .+.+.++++++.+.+.+..|++++.++|.+.. .+... ...+.+++++++..+
T Consensus 8 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~--~~~~~~~~~~~~~~~ 76 (592)
T PRK10790 8 WPTLKRLLAYGSPWRK---------PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL--GLVAGLAAAYVGLQL 76 (592)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch--hHHHHHHHHHHHHHH
Confidence 3445556666666554 35555666677777888999999999997643 22211 111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..+..+....+ ... ....+.+.+|..+|.++.+.+. +++. .+|+++|++.+...+......++..++
T Consensus 77 ~~~~~~~~~~~~----~~~-~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~ 151 (592)
T PRK10790 77 LAAGLHYAQSLL----FNR-AAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAA 151 (592)
T ss_pred HHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222111 111 2223557889999999988775 3332 379999999999887777777777777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
.++.++++++.++|++++++++..++.+++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.
T Consensus 152 ~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~ 231 (592)
T PRK10790 152 LIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMG 231 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHH
Confidence 77777778888999998887777666666666666666666666666677778888999999999999999987775554
Q ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNL-EFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISA 441 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 441 (788)
+..++..+...+........ .........+..++.+++++. +..|.+++|.+.+++.++..+..++..+...+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 232 EASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333222111111000 111111111111111122222 5689999999988888888888888877777777777
Q ss_pred HHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeE
Q 040758 442 FSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSL 521 (788)
Q Consensus 442 ~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl 521 (788)
.....+|+.++.+. +.... . . . ......+.|+++||+|+||+ ++++|+|+||
T Consensus 311 ~~~s~~ri~~~l~~---~~~~~--~-------------------~-~--~~~~~~~~i~~~~v~f~y~~-~~~il~~i~l 362 (592)
T PRK10790 311 AVVAGERVFELMDG---PRQQY--G-------------------N-D--DRPLQSGRIDIDNVSFAYRD-DNLVLQNINL 362 (592)
T ss_pred HHHHHHHHHHHhcC---CCccC--C-------------------C-C--ccCCCCCeEEEEEEEEEeCC-CCceeeceeE
Confidence 77778887665332 11000 0 0 0 00112356999999999984 4679999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|++||++||||+||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|+|
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~l~~~i~~ 419 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL-----------------------SHSVLRQGVAM 419 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC-----------------------CHHHHHhheEE
Confidence 9999999999999999999999999999999999999965544333 23356788999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LN 680 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~ 680 (788)
|||||++|++||+|||+++. +. +++++.++++.+++++..++ ++
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~-~~----------------------------------~d~~i~~a~~~~gl~~~i~~lp~ 464 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGR-DI----------------------------------SEEQVWQALETVQLAELARSLPD 464 (592)
T ss_pred EccCCccccchHHHHHHhCC-CC----------------------------------CHHHHHHHHHHcCcHHHHHhccc
Confidence 99999999999999999975 32 34556666666666654444 48
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEE
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~I 757 (788)
||||. ++.|.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|++ .++|+|+||||++.++.||+|
T Consensus 465 Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~i 544 (592)
T PRK10790 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTI 544 (592)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 99997 899999999999999999999999999999999999999999999999976 589999999999999999999
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
++|++|+.
T Consensus 545 i~l~~G~i 552 (592)
T PRK10790 545 LVLHRGQA 552 (592)
T ss_pred EEEECCEE
Confidence 99999975
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-66 Score=611.38 Aligned_cols=535 Identities=18% Similarity=0.204 Sum_probs=391.3
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.++.++++++++++ .+.+.++++++..++.+..|++++.++|.+. ..+...+.....++++++ ++.
T Consensus 5 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~----~~~ 71 (576)
T TIGR02204 5 PLAALWPFVRPYRG---------RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVA----LVL 71 (576)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHH----HHH
Confidence 45667777766554 3556666777888888999999999999744 333222211111111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++..++. .++ ...+...+|..+|.++.+.+. +++. .+|+++|++.+...+...+..++..++.+
T Consensus 72 ~~~~~~~~~~~----~~~-~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 146 (576)
T TIGR02204 72 ALGTAARFYLV----TWL-GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMC 146 (576)
T ss_pred HHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222221111 122 223567788999999987765 3321 37999999999887666666777777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
++++++++.++|++++++++..++.+++..++.++..+..+...+..+++.+.+.|..+++++||+|+.|+.+.+++.+.
T Consensus 147 ~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~ 226 (576)
T TIGR02204 147 IGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGA 226 (576)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHH
Confidence 77777888899999998888877777778888888888888888888899999999999999999999999888666555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
.++..+...+.................+..++.+.+++++++.|.+|+|.+.++..++..+..++..+...+..+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~ 306 (576)
T TIGR02204 227 VEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAG 306 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443332222111222222222233334445567788899999999988888888888888888777777777778
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccceeeeeEEE
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATLVRDLSLVI 523 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i 523 (788)
..+|+.++.+. +++.+... ... .......+.|+++||+|+||+++ +++|+|+||+|
T Consensus 307 ~~~ri~~~l~~---~~~~~~~~-------------------~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i 363 (576)
T TIGR02204 307 AAERLIELLQA---EPDIKAPA-------------------HPK-TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTV 363 (576)
T ss_pred HHHHHHHHhCC---CCcCCCCC-------------------CCc-cCCcCCCceEEEEEEEEECCCCCCCccccceeEEe
Confidence 88887665332 11100000 000 00011234699999999998533 67999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
+|||+++|+||||||||||+|+|+|+|+|++|+|.+||.+..++ +...++++|+|+|
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~-----------------------~~~~~~~~i~~~~ 420 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL-----------------------DPAELRARMALVP 420 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc-----------------------CHHHHHHhceEEc
Confidence 99999999999999999999999999999999999965543322 2224567899999
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSL 682 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~ 682 (788)
|+|++|++||+|||.++.++. +++++.++++.+++.+..++ ++|+
T Consensus 421 Q~~~lf~~Ti~~Ni~~~~~~~----------------------------------~~~~~~~~l~~~~l~~~i~~l~~gl 466 (576)
T TIGR02204 421 QDPVLFAASVMENIRYGRPDA----------------------------------TDEEVEAAARAAHAHEFISALPEGY 466 (576)
T ss_pred cCCccccccHHHHHhcCCCCC----------------------------------CHHHHHHHHHHcCcHHHHHhCCCCC
Confidence 999999999999999976432 34566777777777665554 4799
Q ss_pred ccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
++. +++|.+||||||||++||||++++|++||||||||+||+++|+.+++.|++ +++|+|+||||++..+.||+|++
T Consensus 467 ~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~ 546 (576)
T TIGR02204 467 DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVV 546 (576)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE
Confidence 996 899999999999999999999999999999999999999999999999876 58999999999999999999999
Q ss_pred EccCCC
Q 040758 760 ISTVDQ 765 (788)
Q Consensus 760 l~~g~~ 765 (788)
|++|+.
T Consensus 547 l~~g~~ 552 (576)
T TIGR02204 547 MDQGRI 552 (576)
T ss_pred EECCEE
Confidence 999974
No 22
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=4.7e-66 Score=612.64 Aligned_cols=571 Identities=27% Similarity=0.398 Sum_probs=415.0
Q ss_pred hHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH
Q 040758 130 LNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 130 ~~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~ 209 (788)
+...+++++++++|||++++ +..+++.+++.++.+++++..|++.+.++|.+..++...+...++.+++++++..+
T Consensus 75 ~~~~~~~l~~~~~p~~~~~~----~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~ 150 (659)
T TIGR00954 75 FLGKLDFLLKILIPRVFCKE----TGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASF 150 (659)
T ss_pred HHHHHHHHHHHHcCcccchH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 34557788999999998654 23455566666777889999999999999998877665554433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQS-IIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFS 288 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~-~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~ 288 (788)
+..+..++...+...+|.+++.++..+++.+..++++...+ -.+++++|+++|++.+...+...+..++..++++++++
T Consensus 151 ~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~ 230 (659)
T TIGR00954 151 INSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYS 230 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777888887777666665554444332211 13566799999999999988888888999999998888
Q ss_pred HHHHh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHH
Q 040758 289 NILYG-IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRS 367 (788)
Q Consensus 289 ~il~~-~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~ 367 (788)
++|+. ++|.++++++++.|+.+++..++++++.+...+.++.++++++.+.|.++|+++||+|++|+.|.+++.+.+++
T Consensus 231 ~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~ 310 (659)
T TIGR00954 231 FKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYR 310 (659)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77776 88999998988999999999999999999999999999999999999999999999999999999877777766
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHH-HHHHh-c----CcccHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 040758 368 AFENLTRLLISSRNLEFFTSGYRY-LIQILPAAVV-APMYF-S----GKIEFGVINQSVS----AFNHILGDFSLIVYQF 436 (788)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~-~----G~it~G~l~~~~~----~~~~~~~~l~~~~~~~ 436 (788)
..+...+..........+...+.. ....+..+++ .+.+. . |.+|+|.+.+.+. ++..+..++..+...+
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~ 390 (659)
T TIGR00954 311 LVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAG 390 (659)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544443322222222222211 1122222222 22222 2 7899997665322 2445566677777777
Q ss_pred HHHHHHHHHHHHhHhhhhhcccccCCCCCch-hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccc
Q 040758 437 QAISAFSAVIDRLGEFDDVLDSSSSKNLSEP-LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATL 515 (788)
Q Consensus 437 ~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~v 515 (788)
..+.....+.+|+.++.+..++........+ ..............+. ..+....+...+.|+++||+|+|++ ++++
T Consensus 391 ~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~nv~~~~~~-~~~i 467 (659)
T TIGR00954 391 RDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNL--VPGRGIVEYQDNGIKFENIPLVTPN-GDVL 467 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc--cccccccccCCCeEEEEeeEEECCC-CCee
Confidence 7788888889998887654332110000000 0000000000000000 0000001113457999999999974 4579
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.++ .
T Consensus 468 l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~----------------------------------~ 513 (659)
T TIGR00954 468 IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP----------------------------------A 513 (659)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeec----------------------------------C
Confidence 999999999999999999999999999999999999999999862 1
Q ss_pred cceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccc
Q 040758 596 SRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 675 (788)
+++++||||+|++|++|++|||.|+....+.. .....++++.++++.+++++.
T Consensus 514 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~---------------------------~~~~~~~~i~~~l~~~~l~~~ 566 (659)
T TIGR00954 514 KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK---------------------------RRGLSDKDLEQILDNVQLTHI 566 (659)
T ss_pred CCcEEEECCCCCCCCcCHHHHHhcCCChhhhh---------------------------ccCCCHHHHHHHHHHcCCHHH
Confidence 34599999999999999999999874311100 001245678889999999887
Q ss_pred cccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCC
Q 040758 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHK 755 (788)
Q Consensus 676 ~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D 755 (788)
.+++.|+|+..+++.+||||||||++|||||+++|++||||||||+||+++++.+++.+++.|+|+|+||||+++.++||
T Consensus 567 ~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 567 LEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred HhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCC
Confidence 77788999987788999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEEEEccCCCCCCCCCeEE
Q 040758 756 RVLRISTVDQNSSQSNWKL 774 (788)
Q Consensus 756 ~Ilvl~~g~~~~~~~~~~~ 774 (788)
++++|+. +|+|++
T Consensus 647 ~il~l~~------~g~~~~ 659 (659)
T TIGR00954 647 YLLYMDG------RGGYQF 659 (659)
T ss_pred EEEEEeC------CCCccC
Confidence 9999963 578974
No 23
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=3.1e-66 Score=608.39 Aligned_cols=531 Identities=18% Similarity=0.154 Sum_probs=382.9
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
.++++++++++||+ .+++.++++++..++.+..|++++.++|.+..++.. . . .++++++..++.+
T Consensus 6 ~~~~l~~~l~~~k~---------~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~-~----~~~~~~~~~~~~~ 70 (585)
T TIGR01192 6 VYVRALSYLNVHKN---------RVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-L-P----TLALWAGFGVFNT 70 (585)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-H-H----HHHHHHHHHHHHH
Confidence 46778888888876 366667777888888899999999999987654321 1 1 1111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
+..++...+. ... ...+...+|.++|.|+.+++. +++. .+|+++|++.+...+...+..++..++.++
T Consensus 71 ~~~~~~~~~~----~~~-~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~ 145 (585)
T TIGR01192 71 IAYVLVAREA----DRL-AHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALF 145 (585)
T ss_pred HHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221 111 122456677889999988775 4432 279999999998876666666666667776
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
.++++++.++|++++++++..++..++..++.++..+.....++..+++.+.+.|..+++++||+|+.|+.+.+++.+..
T Consensus 146 ~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~ 225 (585)
T TIGR01192 146 LLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFT 225 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHH
Confidence 66677888999999999888888888888888888777777777788888888999999999999999998876555544
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
++..+...+.................+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 305 (585)
T TIGR01192 226 NNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAK 305 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322221111111122222233334444556678888999999999887777777777766666555555555566
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
.+|+.++. +.+...... .+....+...+.|+++||+|+|++ ++++|+|+||+|++
T Consensus 306 ~~ri~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 306 LEDFFDLE---DSVFQREEP---------------------ADAPELPNVKGAVEFRHITFEFAN-SSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHH---cCCccccCC---------------------ccCCCCCCCCCeEEEEEEEEECCC-CCccccceeEEEcC
Confidence 66665443 221110000 000001112346999999999974 45789999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++||+||||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+|+.++||||+
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV-----------------------TRESLRKSIATVFQD 417 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC-----------------------CHHHHHhheEEEccC
Confidence 999999999999999999999999999999999965443322 122456789999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t 684 (788)
|++|++|++|||.++.++. +++++.++++.+++++... .++|++|
T Consensus 418 ~~lf~~ti~~Ni~~~~~~~----------------------------------~~~~~~~a~~~~~~~~~i~~l~~g~~t 463 (585)
T TIGR01192 418 AGLFNRSIRENIRLGREGA----------------------------------TDEEVYEAAKAAAAHDFILKRSNGYDT 463 (585)
T ss_pred CccCcccHHHHHhcCCCCC----------------------------------CHHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999999999999975432 2345556666666655433 4589999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. ++++.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|.+ .++|+|+||||++.++.||+|++|+
T Consensus 464 ~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~ 543 (585)
T TIGR01192 464 LVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLD 543 (585)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEE
Confidence 6 899999999999999999999999999999999999999999999999975 5899999999999999999999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 544 ~G~i 547 (585)
T TIGR01192 544 QGRL 547 (585)
T ss_pred CCEE
Confidence 9875
No 24
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=8.8e-66 Score=600.47 Aligned_cols=517 Identities=19% Similarity=0.210 Sum_probs=371.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 156 QLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 156 ~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 234 (788)
.++..++++++..++.+..|++++.++|.+. .++...+. .+++++++..++..+..++..++ ... ....+
T Consensus 7 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~ 77 (544)
T TIGR01842 7 TFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLL----MLTVLALGLYLFLGLLDALRSFV----LVR-IGEKL 77 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHH
Confidence 3566677777888888999999999999764 33322221 11111111111111112222111 111 22335
Q ss_pred HHHhhhhhHHHHhcCCCCCC--chhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSIIDN--PDQRIVDDLSSFTGTALS-FSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~~~~--~~~Ri~~Dv~~v~~~~~~-~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
...+|..+|.|+.+.+.... ..+++++|++.+.+.+.. ....++..++.++ ++++++.++|++++++++..++.++
T Consensus 78 ~~~lr~~~~~~ll~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 78 DGALNQPIFAASFSATLRRGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHHHHHHhcCcccCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67789999999988876322 257899999999886554 2333444444333 3457888999998888777776666
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRY 391 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (788)
+..++.++..+..+..++..+++...+.|..+++++||+|+.|+.+.+++.+..++..+...+.................
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677777888888899999999999999999888655555554443333322222222222222333
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhh
Q 040758 392 LIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKI 471 (788)
Q Consensus 392 ~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~ 471 (788)
+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.......+|+.++.+. +.+.. .
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~---~~~~~--~----- 306 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLAN---YPSRD--P----- 306 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---Ccccc--C-----
Confidence 3344445567788889999999998888888888888887777777777777888888765432 11100 0
Q ss_pred hhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 472 CLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
. ...+...+.++++||+|+|+++++++|+|+||++++||+++||||||||||||+++|+|+|+
T Consensus 307 ----------------~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 307 ----------------A-MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred ----------------C-CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 00011234699999999998655689999999999999999999999999999999999999
Q ss_pred CCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhH
Q 040758 552 DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631 (788)
Q Consensus 552 p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~ 631 (788)
|++|+|.+||.+..++ +...+|+.++||||+|++|++|++|||.++..+.
T Consensus 370 ~~~G~i~~~g~~i~~~-----------------------~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~------- 419 (544)
T TIGR01842 370 PTSGSVRLDGADLKQW-----------------------DRETFGKHIGYLPQDVELFPGTVAENIARFGENA------- 419 (544)
T ss_pred CCCceEEECCEehhhC-----------------------CHHHHhhheEEecCCcccccccHHHHHhccCCCC-------
Confidence 9999999965543322 1224567899999999999999999998754322
Q ss_pred HHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccC
Q 040758 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSK 709 (788)
Q Consensus 632 aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~ 709 (788)
+++++.++++.++++++.+. ++|++|. +++|.+||||||||++|||||+++
T Consensus 420 ---------------------------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 420 ---------------------------DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred ---------------------------CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 33455566666666554444 4799996 899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 710 PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 710 p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
|++||||||||+||+++++.+.+.|.+ .|+|+|+||||++..+.||+|++|++|+..
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999998875 479999999999988999999999998653
No 25
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.9e-68 Score=629.45 Aligned_cols=434 Identities=21% Similarity=0.269 Sum_probs=317.7
Q ss_pred hcCCCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 040758 247 QSQSIIDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLV 321 (788)
Q Consensus 247 ~~~~~~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~ 321 (788)
|..+|||.. .+|+++|++.+++.+..-+-.++..+.++++.+++-+...|+|+++++.+.|+.++....+.+-+.
T Consensus 117 Qdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~ 196 (1228)
T KOG0055|consen 117 QDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLS 196 (1228)
T ss_pred CccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666643 379999999999877666666777777777666677778899999999999988888888888888
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHH
Q 040758 322 TLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQ----ILP 397 (788)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 397 (788)
+...++++..++-.....+++.+++||.+|++|+.|.+ +|.+..+...+...+.....-+.....++.. ...
T Consensus 197 ~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~----ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~ 272 (1228)
T KOG0055|consen 197 KLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIE----RYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALA 272 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88877777777666666899999999999999999985 5555555544444333222211111111111 111
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhc
Q 040758 398 AAVVAPMYFSGKIEFGVINQSVSAFNHILGD--FSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTY 475 (788)
Q Consensus 398 ~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~--l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~ 475 (788)
+.++..++..+..+.|.+...+.+ -+++. +......+..+........++.+ +.+..+
T Consensus 273 ~WyG~~li~~~~~~~g~v~~v~~~--vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~---~i~~~~--------------- 332 (1228)
T KOG0055|consen 273 FWYGSTLILNGGYNGGDVITVFFS--VLIGGMSLGQASPHLSAFAKARAAAYRIFE---TIDRKP--------------- 332 (1228)
T ss_pred HHHHHHHHhcCCCCCceEEEEEee--hhhhhhhhhccccchHHHhccccchHHHHH---HhcCCC---------------
Confidence 222333444455555643211100 00110 11111111222222222233222 122111
Q ss_pred cccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 040758 476 CSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554 (788)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~ 554 (788)
.+++.. .+........|.|+|+||+|+||.++ .++|+|+||+|++||++||||||||||||+++||.|||+|++
T Consensus 333 -~i~~~~----~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 333 -SIDPYS----KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred -CCCccc----ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 111110 01112334678999999999999753 369999999999999999999999999999999999999999
Q ss_pred ceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHH
Q 040758 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634 (788)
Q Consensus 555 G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~ 634 (788)
|+|++||.|.++++ .+.+|.+||+|.|+|.||++||+|||.||.++++.+++.+|||
T Consensus 408 G~V~idG~di~~~~-----------------------~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 408 GEVLIDGEDIRNLN-----------------------LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred ceEEEcCccchhcc-----------------------hHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 99999777665552 2356778999999999999999999999999999999999999
Q ss_pred hcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEE
Q 040758 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIV 713 (788)
Q Consensus 635 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iL 713 (788)
.+++++|+...+ +||+|. +|+|.+|||||||||||||||++||+||
T Consensus 465 ~ana~~fi~~lp---------------------------------~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~IL 511 (1228)
T KOG0055|consen 465 AANAHDFILKLP---------------------------------DGYDTLVGERGVQLSGGQKQRIAIARALVRNPKIL 511 (1228)
T ss_pred HccHHHHHHhhH---------------------------------HhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence 999887765422 689997 9999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 714 LLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 714 iLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||||||+++|+.++++|++ .|+|+|+||||++++++||+|++|++|+.
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~I 565 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKI 565 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEE
Confidence 99999999999999999999987 69999999999999999999999999975
No 26
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-66 Score=568.70 Aligned_cols=522 Identities=17% Similarity=0.208 Sum_probs=332.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 147 SDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA--DKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALR 224 (788)
Q Consensus 147 ~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (788)
.++.+..+..++.++++.+....+.+..|++++.++|.+. +..+..+......++++++. .....++..
T Consensus 22 ~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~ia-r~~s~~F~e-------- 92 (591)
T KOG0057|consen 22 PKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIA-RLGSSVFNE-------- 92 (591)
T ss_pred ecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHH-HHHHHHHHH--------
Confidence 3444555566666666666667788999999999999874 33331111111111111111 111111111
Q ss_pred HHHHHHHHHHHHHhh---hhhHHHHhcCCC--CCCch----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040758 225 WRSWMTKYYMERYLK---DQTFYKIQSQSI--IDNPD----QR-IVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGI 294 (788)
Q Consensus 225 ~~~~l~~~~~~~~Lr---~~~f~~l~~~~~--~~~~~----~R-i~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~ 294 (788)
.+...+.+..++..| .++|.|+.+++. +.++. +| +..-..++..++...+..++..++.+.....++.+-
T Consensus 93 l~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~ 172 (591)
T KOG0057|consen 93 LRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYK 172 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222 345666655443 22221 22 222333444444444455555555555444444433
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHH
Q 040758 295 YPP-LFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLT 373 (788)
Q Consensus 295 ~~~-L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~ 373 (788)
... .+++.++.+..+..++.....+..+...+..++.......+-+++.|.++||+||.|++|.+++ .....++.
T Consensus 173 ~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y----~~~l~~~~ 248 (591)
T KOG0057|consen 173 FGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRY----DGSLKTYE 248 (591)
T ss_pred hchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHH----HHHHHHHH
Confidence 333 3333344444444444444444444444445555566666789999999999999999999644 44444443
Q ss_pred HHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040758 374 RLLISS----RNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRL 449 (788)
Q Consensus 374 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl 449 (788)
+...+. ..+++.+..+..+.....+..+..-...|.+|+|.+....+.+.++..++..+...+..+.+. +
T Consensus 249 ~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~------l 322 (591)
T KOG0057|consen 249 RAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQA------L 322 (591)
T ss_pred HhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHH------H
Confidence 333322 222333322211111111222333456789999998766665555555554444333322211 1
Q ss_pred HhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEE
Q 040758 450 GEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHL 529 (788)
Q Consensus 450 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~i 529 (788)
....+.+...+.. ..+. ..+.+.....+.|+|+||+|+|++ ++++|+++||+|++||++
T Consensus 323 ~Dm~~~~~l~~~~------~~i~--------------~~~~~i~~~~~~I~F~dV~f~y~~-k~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 323 TDMRTLFILLEVD------EDIQ--------------EAALPIELFGGSIEFDDVHFSYGP-KRKVLKGVSFTIPKGEKV 381 (591)
T ss_pred HhHHHHHhhhhhh------hhhh--------------hccCCcccCCCcEEEEeeEEEeCC-CCceecceeEEecCCCEE
Confidence 1111111110000 0000 001122234567999999999985 667999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccC
Q 040758 530 LVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV 609 (788)
Q Consensus 530 aIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf 609 (788)
||||+|||||||++|+|.||++ ++|+|++||.|..++ +++.+|+.|||||||..||
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~-----------------------~~~SlR~~Ig~VPQd~~LF 437 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEV-----------------------SLESLRQSIGVVPQDSVLF 437 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhh-----------------------ChHHhhhheeEeCCccccc
Confidence 9999999999999999999999 999999966554433 3446788899999999999
Q ss_pred CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccC
Q 040758 610 LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEW 688 (788)
Q Consensus 610 ~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~ 688 (788)
++||.+||.||++..+.+++.++||.++.|+.++. .++||+|. ||+
T Consensus 438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~---------------------------------l~~GY~T~VGer 484 (591)
T KOG0057|consen 438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISR---------------------------------LPDGYQTLVGER 484 (591)
T ss_pred chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh---------------------------------ccccchhhHhhc
Confidence 99999999999998888777777777777654432 23799996 999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|..|||||||||+||||++|||||+++|||||+||.+||+++.+.+.+ .|+|+|+|+||+++++.||+|+++++|..
T Consensus 485 G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v 563 (591)
T KOG0057|consen 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTV 563 (591)
T ss_pred ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCee
Confidence 999999999999999999999999999999999999999999999876 69999999999999999999999999964
No 27
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.8e-69 Score=574.96 Aligned_cols=533 Identities=19% Similarity=0.215 Sum_probs=367.7
Q ss_pred HhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 040758 140 VAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYY-LGAFAGGIPFFVLRDYAR 218 (788)
Q Consensus 140 ~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~ 218 (788)
...||-|.+..+......+...++..+.-.+.+..|.+.+.++|.+...+. +.....+. +.+..+.... ...+++.
T Consensus 200 ~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~--~~~~~~~~~v~L~flqg~g-tgsG~~~ 276 (790)
T KOG0056|consen 200 TVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDT--FQYSLVFLYVFLKFLQGGG-TGSGFLN 276 (790)
T ss_pred EeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch--hhHHHHHHHHHHHHHhcCC-ccccchh
Confidence 445666655555444444444444455556778899999999999875543 22221111 1111110000 0001111
Q ss_pred HHHHHHHHHH--H-HHHHHHHHhhhhhHHHHhcCCCC---CCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 040758 219 ETLALRWRSW--M-TKYYMERYLKDQTFYKIQSQSII---DNP---DQRIVDDLSSFTGTALSFSLTLFNAAVDLISF-S 288 (788)
Q Consensus 219 ~~l~~~~~~~--l-~~~~~~~~Lr~~~f~~l~~~~~~---~~~---~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~-~ 288 (788)
..|+. . -..+..+.+...+|.|+.+++.- ... .=|+++.-.............+...+++++.. +
T Consensus 277 -----nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 277 -----NLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred -----hhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhh
Confidence 11111 1 12233455666788888877652 111 11222111111112223334455555554432 3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 289 NILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 289 ~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
.+...++||..+++++....+..++..+..+..+..++...+..+-+..-.+++-|.|+||-|++|++|.+ +|++.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEve----rYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVE----RYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHH----HHHHH
Confidence 34556799999999999888888777777666665555555555556666899999999999999999985 66666
Q ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHH---HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISS-RNLEFFTSGYRYLI---QILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 369 ~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
..++.+...+. ..+++....-+.++ .+...+.++|++..+..|+|+++.+..+..++..++.++...+.++....-
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 66655544332 22222222212221 222233456777789999999888888888888888887776666654333
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
-++++. ++++++.+. .+.++..+....+|.|+|+||+|.|++ ++++|+||||+++
T Consensus 508 DmEnmf---dllkee~eV---------------------vd~P~a~pl~~~~G~i~fsnvtF~Y~p-~k~vl~disF~v~ 562 (790)
T KOG0056|consen 508 DMENMF---DLLKEEPEV---------------------VDLPGAPPLKVTQGKIEFSNVTFAYDP-GKPVLSDISFTVQ 562 (790)
T ss_pred hHHHHH---HHhhcCchh---------------------hcCCCCCCccccCCeEEEEEeEEecCC-CCceeecceEEec
Confidence 344433 333322110 111122333446789999999999975 7899999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
||+++|||||||+||||++++|.||||.++|.|.+||.|.+.. ...++|++||+|||
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv-----------------------t~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV-----------------------TQSSLRSSIGVVPQ 619 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH-----------------------HHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999965544333 22356888999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT 684 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t 684 (788)
|..||++||..||.|+.+.++.+++.+|||+|+.|+.+.. -|+||+|
T Consensus 620 DtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~---------------------------------fPegY~t 666 (790)
T KOG0056|consen 620 DTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQ---------------------------------FPEGYNT 666 (790)
T ss_pred cceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhc---------------------------------Cchhhhh
Confidence 9999999999999999999999999999999888765543 2478999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. ||+|-.|||||||||||||+++++|.|++|||||||||..+|+.||.+|.+ .++|.|+|+||++++-+||.|++++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 6 999999999999999999999999999999999999999999999999987 7999999999999999999999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|..
T Consensus 747 ~G~I 750 (790)
T KOG0056|consen 747 NGRI 750 (790)
T ss_pred CCeE
Confidence 9965
No 28
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-64 Score=592.83 Aligned_cols=511 Identities=15% Similarity=0.145 Sum_probs=361.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 040758 165 FATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFY 244 (788)
Q Consensus 165 ~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~ 244 (788)
++.+++.+..|++++.++|.+..+... ... ...+++++++..+...+..++.. .+... ....+...+|..+|.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~lr~~l~~ 77 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWR----VLLFG-ASYQLAVELREDFYR 77 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHH
Confidence 445566778899999999976543211 111 11111111111111112222211 11122 223356778999999
Q ss_pred HHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHH
Q 040758 245 KIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNIL-YGIYPPLFVVLLVYSIGGTAISIYL 316 (788)
Q Consensus 245 ~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il-~~~~~~L~l~~ll~~~~~~~i~~~~ 316 (788)
|+.+.+. +++ . .+|+++|++.+.......+..++..++..+.+++++ +.++|++++++++..++.+++..++
T Consensus 78 ~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~ 157 (569)
T PRK10789 78 QLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRY 157 (569)
T ss_pred HHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 332 2 379999999998655444455555544444444444 4688989888888878888888888
Q ss_pred hhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040758 317 GKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQIL 396 (788)
Q Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (788)
.++..+.....++..+++.+.+.|...++++||+|+.|+.+.+++.+..++..+...+.................+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (569)
T PRK10789 158 GDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLL 237 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777778888888889999999999999999988865544444333332222111111111111222233334
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhcc
Q 040758 397 PAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYC 476 (788)
Q Consensus 397 ~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~ 476 (788)
.++++++++..|.+|+|.+.++..++..+..++..+...+..+.......+|+.++.+ .+.....
T Consensus 238 ~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~---~~~~~~~------------ 302 (569)
T PRK10789 238 AIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLA---EAPVVKD------------ 302 (569)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCcccC------------
Confidence 4455678888999999999888877777777777766666666666777788766532 2111000
Q ss_pred ccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 040758 477 SVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556 (788)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~ 556 (788)
+....+...+.|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+
T Consensus 303 -----------~~~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 371 (569)
T PRK10789 303 -----------GSEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD 371 (569)
T ss_pred -----------CCCCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence 000001123469999999999864567999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhc
Q 040758 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636 (788)
Q Consensus 557 I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~ 636 (788)
|.+||.+..++ +...+|+.++||||+|++|++|++|||.++.++.
T Consensus 372 i~~~g~~~~~~-----------------------~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~------------ 416 (569)
T PRK10789 372 IRFHDIPLTKL-----------------------QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA------------ 416 (569)
T ss_pred EEECCEEHhhC-----------------------CHHHHHhheEEEccCCeeccccHHHHHhcCCCCC------------
Confidence 99965443222 2234577899999999999999999999975432
Q ss_pred CCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040758 637 GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVL 714 (788)
Q Consensus 637 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLi 714 (788)
+++++.++++.+++++... .++|++|. +++|.+||||||||++|||||+++|++||
T Consensus 417 ----------------------~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 417 ----------------------TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ----------------------CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3345566666666654333 35899997 89999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 715 LDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 715 LDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||+||+++++.+.+.|++ .|+|+|+||||++.++.||+|++|++|+.
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i 527 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHI 527 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEE
Confidence 9999999999999999999976 68999999999999999999999999875
No 29
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=1.5e-65 Score=564.26 Aligned_cols=585 Identities=38% Similarity=0.573 Sum_probs=475.6
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
...++++++.+++++++..+....+.+++++++++...+....+..+-+.++.++..+|.+.|+...+.+++.+.....+
T Consensus 59 ~~f~~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~ 138 (659)
T KOG0060|consen 59 KVFFQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLL 138 (659)
T ss_pred HHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888887776555566666777777777777766676666777888899999988888777776666665566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI-IDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSN 289 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~-~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~ 289 (788)
..+..+....+.++||.+++.+++.+|++...||+++.++. .+||+||+++|++.+...+..+...++...++++.+..
T Consensus 139 ~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~ 218 (659)
T KOG0060|consen 139 NALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTF 218 (659)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhh
Confidence 67777888889999999999999999999999999998765 69999999999999998888888888888888888888
Q ss_pred HHHhhhhhHHHH-HHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 290 ILYGIYPPLFVV-LLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 290 il~~~~~~L~l~-~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
.++...+|+..+ ++.++.+..++...+.+++.+....+++.|++++..+.+.+.|.|.|+.|+++..|.....++|+..
T Consensus 219 ~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~L 298 (659)
T KOG0060|consen 219 RLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNL 298 (659)
T ss_pred HHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHH
Confidence 888777666544 4556677888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSG----KIEF----GVINQSVSAFNHILGDFSLIVYQFQAIS 440 (788)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----~it~----G~l~~~~~~~~~~~~~l~~~~~~~~~l~ 440 (788)
.+...........+.++.+.+.++..+++.++++..++.| .++- |.+......+..++..|+.+....+.++
T Consensus 299 v~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls 378 (659)
T KOG0060|consen 299 VQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLS 378 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 9998888887788888888888888888777777666666 2333 3333444556777888888888888899
Q ss_pred HHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeee
Q 040758 441 AFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLS 520 (788)
Q Consensus 441 ~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~is 520 (788)
.+..+..|+.++.++++...........+ ..+...........++.......+..|+|++|++.-|+++..+++|+|
T Consensus 379 ~lsGyt~Ri~el~~~l~d~~~~~~~~~~~---~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls 455 (659)
T KOG0060|consen 379 RLSGYTHRIGELMEVLDDLSSGSQECTME---EEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLS 455 (659)
T ss_pred HhhhHHHHHHHHHHHHHHhccCCcchhhh---hhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeee
Confidence 99999999999988876544221111000 000000000011111222222234679999999999976556779999
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
|+|+.|+.+.|.||||||||+|+|.|.|+|+..+|++..-.+ ..-+.+.
T Consensus 456 ~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~-------------------------------~~~~~lf 504 (659)
T KOG0060|consen 456 LEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-------------------------------GGPKDLF 504 (659)
T ss_pred eEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-------------------------------CCCCceE
Confidence 999999999999999999999999999999999999975210 0013489
Q ss_pred EEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCC
Q 040758 601 FLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680 (788)
Q Consensus 601 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 680 (788)
||||.||+..||+||++.||....+.. .+.++++++.+.|+.++++++.++.+
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~---------------------------~~~~~d~~i~r~Le~v~L~hl~~r~g 557 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMD---------------------------SKSASDEDILRILENVQLGHLLEREG 557 (659)
T ss_pred EecCCCCccccchhheeeccCcccccc---------------------------ccCCCHHHHHHHHHHhhhhhHHHHhC
Confidence 999999999999999999986543321 12367889999999999999999999
Q ss_pred Cccc--cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEE
Q 040758 681 SLDT--TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 681 g~~t--~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|+|+ ..+|...||+||+||+|+||.++++|++-||||+|||+|.+.|..+++.+++.|.|.|.|+||.++.++||.++
T Consensus 558 gld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L 637 (659)
T KOG0060|consen 558 GLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVL 637 (659)
T ss_pred CCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEE
Confidence 9995 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCeEEEecCcccc
Q 040758 759 RISTVDQNSSQSNWKLEFIDQESL 782 (788)
Q Consensus 759 vl~~g~~~~~~~~~~~~~~~~~~~ 782 (788)
.|+. .|+|+++.|+.++-
T Consensus 638 ~~~g------~g~w~~~~I~~qs~ 655 (659)
T KOG0060|consen 638 RMDG------RGSWRFHQIDDQSD 655 (659)
T ss_pred EecC------CCceEEEEechhhh
Confidence 9974 79999999998763
No 30
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-63 Score=555.09 Aligned_cols=513 Identities=19% Similarity=0.226 Sum_probs=361.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040758 160 VFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLK 239 (788)
Q Consensus 160 ~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr 239 (788)
..+++.+..++.+...+++..+++.+..++. ...+..+++.+++..++-.+..+..+++..+ ....+.+.||
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~-----aa~~~~~~LR 76 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYR-----AAAKVRASLR 76 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3445555555666677777888877665542 1122222222222111111222222222222 2334678899
Q ss_pred hhhHHHHhcCCC-C--CCc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 040758 240 DQTFYKIQSQSI-I--DNP----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAI 312 (788)
Q Consensus 240 ~~~f~~l~~~~~-~--~~~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i 312 (788)
..+++|+.+++. + ..| .+.+++-++.+...+..+...+....+.-+.+++.+++++|.-++++++..|++-+.
T Consensus 77 ~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlf 156 (559)
T COG4988 77 QLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLF 156 (559)
T ss_pred HHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999988775 2 123 267788888888877777777777777766677788889999999999888888778
Q ss_pred HHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HH
Q 040758 313 SIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGY-RY 391 (788)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 391 (788)
...++.+..+.++++-.....+.+...+...+++|+|+|++.+...+ ++.+..+++++...+.-+..+..+.+ ..
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~----~i~~~se~fR~~TM~vLriAflSs~vLef 232 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEE----RIRKDSEDFRKATMSVLRIAFLSSAVLEF 232 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999887764 45555555544443333333332222 22
Q ss_pred HHH---HHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCch
Q 040758 392 LIQ---ILPAAVVAPMYFS-GKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467 (788)
Q Consensus 392 ~~~---~~~~~~~~~l~~~-G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~ 467 (788)
+.. .++.++++..+.+ |.+|+.....++...--+..++..+...+-.-....+..+.+..+. +.+.....
T Consensus 233 fa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l---~~~~~~~~--- 306 (559)
T COG4988 233 FAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLL---ESPVATPG--- 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh---cCCCCCCC---
Confidence 222 2222333444556 7887765433333322333333333333322222233344444332 11111000
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
..............++++|++|.||++ +++++|+||++++|+.+||||+||||||||+++|+
T Consensus 307 -----------------~~~~~~~~~~~~~ei~~~~l~~~y~~g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 307 -----------------SGEKAEVANEPPIEISLENLSFRYPDG-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred -----------------CccccccccCCCceeeecceEEecCCC-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 000000111123356677999999864 48999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccc
Q 040758 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK 627 (788)
Q Consensus 548 gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~ 627 (788)
|+.+|++|+|.+||.+..+++ ...+|+++++|+|+|++|++||||||++++++.
T Consensus 369 G~~~~~~G~I~vng~~l~~l~-----------------------~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~--- 422 (559)
T COG4988 369 GFLAPTQGEIRVNGIDLRDLS-----------------------PEAWRKQISWVSQNPYLFAGTIRENILLARPDA--- 422 (559)
T ss_pred CcCCCCCceEEECCccccccC-----------------------HHHHHhHeeeeCCCCccccccHHHHhhccCCcC---
Confidence 999999999999877766552 346789999999999999999999999987643
Q ss_pred hhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 628 PASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 628 ~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
+++++.++++++++.++.+.++|+|+. +|+|..|||||+||||+||||
T Consensus 423 -------------------------------s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAl 471 (559)
T COG4988 423 -------------------------------SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARAL 471 (559)
T ss_pred -------------------------------CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHh
Confidence 457777888888888777778899997 999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++++++|||||||+||.+||+.|.+.|.+ +++|+|+||||+..++.+|+|++|++|+.
T Consensus 472 l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l 532 (559)
T COG4988 472 LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRL 532 (559)
T ss_pred cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCce
Confidence 999999999999999999999999999976 68999999999999999999999999976
No 31
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-63 Score=543.11 Aligned_cols=529 Identities=21% Similarity=0.240 Sum_probs=348.4
Q ss_pred HHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 139 KVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYAR 218 (788)
Q Consensus 139 ~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 218 (788)
+|+++|++ .+..+.+.++++.++...+...-.+.|+++..-.-.... . .+.+.+..+....+.+.+...
T Consensus 6 p~i~l~~~------~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~---~-~f~~~~p~a~VR~~aI~Rt~~- 74 (573)
T COG4987 6 PYLRLYKR------HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA---Y-IFNVMLPSAGVRGLAILRTAA- 74 (573)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH---H-HHHHHHHHHHHHHHHHHHHHH-
Confidence 55555554 122355555665655555666677788888643222211 1 111111111111122222111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC-----CCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 219 ETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI-----IDNP--DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNIL 291 (788)
Q Consensus 219 ~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~-----~~~~--~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il 291 (788)
....|+.+.-....+...||.++|.++...+. +.+. -+|++.|++.++..+...+...+..++......+.+
T Consensus 75 -RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L 153 (573)
T COG4987 75 -RYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGL 153 (573)
T ss_pred -HHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11122222222233556799999999987654 2222 389999999999977666655555555555555667
Q ss_pred HhhhhhHHHHHHHHHHHH-HHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHH
Q 040758 292 YGIYPPLFVVLLVYSIGG-TAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFE 370 (788)
Q Consensus 292 ~~~~~~L~l~~ll~~~~~-~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~ 370 (788)
.+++|++++.+.++..+. +++...+.+.-++......+..+.++.+..+...+..+...||+++...+ .+...-.
T Consensus 154 ~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~----~l~~~e~ 229 (573)
T COG4987 154 SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRT----ALEATEA 229 (573)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHH----HHHHHHH
Confidence 788898877766554443 33344444555555566667778899999999999999999999977664 3333333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH-HH-HHHHHhcCcccHHHHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHH
Q 040758 371 NLTRLLISSRNLEFFTSGYRYLIQILPA-AV-VAPMYFSGKIEFGVINQ-----SVSAFNHILGDFSLIV-YQFQAISAF 442 (788)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~G~it~G~l~~-----~~~~~~~~~~~l~~~~-~~~~~l~~~ 442 (788)
.+.+...+...+.... ..+..++.. .+ +..+|..+....|...+ .+......+.+|..+. ..++..++.
T Consensus 230 ~~~~~q~k~~~~~~~~---~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~ 306 (573)
T COG4987 230 SWLKAQRKQARFTGLS---DAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQV 306 (573)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHH
Confidence 3333333322222111 112222111 11 13344444444454321 1111112222333333 334555666
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLV 522 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~ 522 (788)
..+..|+.++ .+.+.+... + +.. .+.....++++||+|+||+...++|+|+||+
T Consensus 307 ~~Sa~Rl~~i---~~q~~e~~~-----------------~-----~~~-~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~ 360 (573)
T COG4987 307 IASARRLNDI---LDQKPEVTF-----------------P-----DEQ-TATTGQALELRNVSFTYPGQQTKALKNFNLT 360 (573)
T ss_pred HHHHHHHhhh---ccCCcccCC-----------------C-----ccc-cCCccceeeeccceeecCCCccchhhcccee
Confidence 6666666443 222211100 0 000 0111126999999999998777899999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
+++||++||+|+||||||||+++|+|.|+|++|+|.++|.+...++ ...+|+.|+++
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~-----------------------~~~~~e~i~vl 417 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD-----------------------EQALRETISVL 417 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCC-----------------------hhhHHHHHhhh
Confidence 9999999999999999999999999999999999999655443331 12356789999
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCC
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNS 681 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g 681 (788)
+|++++|++|+|||+..++++ ++|++++++++++++++.+. .++|
T Consensus 418 ~Qr~hlF~~Tlr~NL~lA~~~----------------------------------AsDEel~~aL~qvgL~~l~~~~p~g 463 (573)
T COG4987 418 TQRVHLFSGTLRDNLRLANPD----------------------------------ASDEELWAALQQVGLEKLLESAPDG 463 (573)
T ss_pred ccchHHHHHHHHHHHhhcCCC----------------------------------CCHHHHHHHHHHcCHHHHHHhChhh
Confidence 999999999999999987654 46788888899999876544 4689
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|+|. +|.|..||||||||+||||+|++|+|++||||||.+||+.||+++.+.+.+ +|+|+|+||||+.-++.||||+
T Consensus 464 l~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi 543 (573)
T COG4987 464 LNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543 (573)
T ss_pred hhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE
Confidence 9997 999999999999999999999999999999999999999999999999875 7999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040758 759 RISTVDQNSSQ 769 (788)
Q Consensus 759 vl~~g~~~~~~ 769 (788)
||++|+...+.
T Consensus 544 vl~~Gkiie~G 554 (573)
T COG4987 544 VLDNGKIIEEG 554 (573)
T ss_pred EEECCeeeecC
Confidence 99999875544
No 32
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.4e-62 Score=623.30 Aligned_cols=449 Identities=16% Similarity=0.187 Sum_probs=330.1
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.+|..+|.++.+.+. |+. + .+|+++|++.+...+...+..++..++.+++.+++++..+|+++++++...
T Consensus 1036 ~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~ 1115 (1522)
T TIGR00957 1036 ASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLG 1115 (1522)
T ss_pred HHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999987665 543 3 379999999999877666667777777777776667767776665555544
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNL-EFF 385 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 385 (788)
+++.++..++.+..+...+......+.+.+.+.|+++++++||+|+.|+.+.+ ++.+..+...+........ .+.
T Consensus 1116 ~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1116 LLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH----QSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555556667788888999999999999999976654 3333333322221111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCC
Q 040758 386 TSGYRYLIQILPAAVVAPMYF-SGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNL 464 (788)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~-~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~ 464 (788)
......+..++.++++++.+. .|.++.|.+..++.+...+..++.++...+..+.....+.+|+.++.+...+.. .
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~---~ 1268 (1522)
T TIGR00957 1192 AVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP---W 1268 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---c
Confidence 111122222222223333333 578999998888887777777777777777777777777888877653321110 0
Q ss_pred CchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHH
Q 040758 465 SEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLR 544 (788)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~ 544 (788)
. . +........+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||++
T Consensus 1269 ~--~----------------~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~ 1330 (1522)
T TIGR00957 1269 Q--I----------------QETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTL 1330 (1522)
T ss_pred c--c----------------cCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 0 0 000000001235789999999999865567999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcc
Q 040758 545 AMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTE 624 (788)
Q Consensus 545 lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~ 624 (788)
+|.|+|+|++|+|.+||.|..++ +...+|++|++|||||+||+|||||||.... .
T Consensus 1331 lL~rl~~~~~G~I~IdG~dI~~i-----------------------~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~- 1385 (1522)
T TIGR00957 1331 GLFRINESAEGEIIIDGLNIAKI-----------------------GLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-Q- 1385 (1522)
T ss_pred HHhcCccCCCCeEEECCEEcccc-----------------------CHHHHHhcCeEECCCCcccCccHHHHcCccc-C-
Confidence 99999999999999976655444 2345688899999999999999999997311 1
Q ss_pred ccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHH
Q 040758 625 EVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAF 702 (788)
Q Consensus 625 ~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaI 702 (788)
.++++++++++.+++++.... ++||||. +|.|.+||||||||+||
T Consensus 1386 ---------------------------------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~L 1432 (1522)
T TIGR00957 1386 ---------------------------------YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCL 1432 (1522)
T ss_pred ---------------------------------CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHH
Confidence 345677777777777665544 4899997 89999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 703 ARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 703 ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||+++|+|||||||||+||+++|+.|++.|++ +++|+|+||||++++..||||+||++|+.
T Consensus 1433 ARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1433 ARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999986 69999999999999999999999999975
No 33
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.7e-61 Score=565.26 Aligned_cols=525 Identities=16% Similarity=0.159 Sum_probs=361.7
Q ss_pred HHHHHHHHhc-ccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAA-PYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~-p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++ |+|+ .+++.++++++.++..+..|++++.++|.....+... +.++++++++..
T Consensus 4 ~~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----~~~~~~~~~~~~--- 67 (555)
T TIGR01194 4 AIGEILALLRSPFPA---------ITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGS----LFSFGGLCLLAL--- 67 (555)
T ss_pred hHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH----HHHHHHHHHHHH---
Confidence 4678888888 8876 3666666777777788888998888887432111111 111211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
+..+...++. . .....+.+.+|..+|.|+.+.+. +++ . .+|+++|++.+...+.. ...++..++.+
T Consensus 68 -~~~~~~~~~~----~-~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~ 140 (555)
T TIGR01194 68 -LFRIGADIFP----A-YAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF 140 (555)
T ss_pred -HHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 1222222111 1 12333567899999999998776 332 1 37999999999986643 45566666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
++.+++|++++|++++++++..++.+++..++.++..+.....++..+++...+.|..+++++||+|+.++... ..++
T Consensus 141 ~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~--~~~~ 218 (555)
T TIGR01194 141 FFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSF--AHGA 218 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHH--HHHH
Confidence 66777888999999998887777777777777777766666677778888888899999999999999854211 1245
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHH---hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQIL-PAAVVAPMY---FSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAIS 440 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~ 440 (788)
+.+..+++.+........... ...+..++ ..++++.++ +.|.+|+|.+.+++.+...+..++..+...+..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~ 295 (555)
T TIGR01194 219 IQESANNIADLHIIEILIFIA---AENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILA 295 (555)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444433222111111 11111111 111122222 23689999998888877777888877777777777
Q ss_pred HHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC---Ccccee
Q 040758 441 AFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS---KATLVR 517 (788)
Q Consensus 441 ~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~---~~~vL~ 517 (788)
......+|+.++.+..+.+.... .. +. .......++....+.|+++||+|+|++. ++++|+
T Consensus 296 ~a~~s~~ri~~ll~~~~~~~~~~-~~--------------~~-~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~ 359 (555)
T TIGR01194 296 QAQIACQRLADFGERFNEPEPEL-EL--------------SD-ADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG 359 (555)
T ss_pred HHHHHHHHHHHHHhhhccccccc-cc--------------cc-cccccccccCCCCceEEEEEEEEEeCCCCCCcCceec
Confidence 77788888877643222111000 00 00 0000000011123579999999999752 236999
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +...+|+
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~-----------------------~~~~~~~ 416 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD-----------------------SRDDYRD 416 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------------------CHHHHHh
Confidence 99999999999999999999999999999999999999999965543332 1224567
Q ss_pred eEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 598 GVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
.+++|+||+++|++|+++|+. +. .+++++.++++.++++....
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~~---~~----------------------------------~~~~~~~~~~~~~~l~~~~~ 459 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDEG---EH----------------------------------ASLDNAQQYLQRLEIADKVK 459 (555)
T ss_pred hCcEEccChhhhhhhhhcccc---cc----------------------------------hhHHHHHHHHHHcCCchhhc
Confidence 799999999999999999951 11 13456677778888776555
Q ss_pred c-CCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-H---hcCCEEEEEecCcchhh
Q 040758 678 R-LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI-E---AAGITYISVGHRRTLYD 752 (788)
Q Consensus 678 ~-~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L-~---~~g~TvI~IaHr~~~~~ 752 (788)
. ++||+|. .+|||||||||+||||++++|++||||||||+||+++|+.+++.+ + ..|+|+|+||||+++.+
T Consensus 460 ~lp~g~~t~----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 460 IEDGGFSTT----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE 535 (555)
T ss_pred ccccccCCc----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 4 5788884 679999999999999999999999999999999999999998765 2 35899999999999999
Q ss_pred cCCEEEEEccCCC
Q 040758 753 FHKRVLRISTVDQ 765 (788)
Q Consensus 753 ~~D~Ilvl~~g~~ 765 (788)
.||+|++|++|+.
T Consensus 536 ~~d~i~~l~~G~i 548 (555)
T TIGR01194 536 LADQIIKLAAGCI 548 (555)
T ss_pred hCCEEEEEECCEE
Confidence 9999999999864
No 34
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.1e-61 Score=608.84 Aligned_cols=545 Identities=13% Similarity=0.148 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 156 QLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 156 ~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 235 (788)
.+++.++++++..++..++|++++.++|.+...+. .....++++++.++..++.++..++. .+. ...+.
T Consensus 61 ~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~-~~~~~ 129 (1466)
T PTZ00265 61 LLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCM--------DVV-TTKIL 129 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HHHHH
Confidence 45555666666666777999999999997643221 11111111111111111112221111 222 22356
Q ss_pred HHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
+.+|...|.++.+++. +++. .+|+++|++.++..+...+..++..++.+++.+++++.++|+|++++++.+|+
T Consensus 130 ~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl 209 (1466)
T PTZ00265 130 KTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPL 209 (1466)
T ss_pred HHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7788889999877664 4432 26777788888877666667777778888888888999999999999988888
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFF-TS 387 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 387 (788)
.+++..++.+++.......++..++..+.+.|.+.++++||+|+.|+.+.+ +|.+..+.+.+...+....... ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~----~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 210 IYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILK----KFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777766777777888888999999999999999998885 4444444333332222222111 11
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 040758 388 ---GYRYLIQILPAAVVAPMYFSG--------KIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVL 456 (788)
Q Consensus 388 ---~~~~~~~~~~~~~~~~l~~~G--------~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~ 456 (788)
.+..+..++.++++++++..| .+++|.+.+.+.........+..+...+..+.......+|+.++ +
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~i---i 362 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEI---I 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 111222233344455666664 46777665433222111111222222333444445556666543 2
Q ss_pred ccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCC
Q 040758 457 DSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPS 535 (788)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~s 535 (788)
+.+...... . .....+. .+.|+|+||+|+||+++ .++|+|+||+|++||++||||||
T Consensus 363 ~~~~~~~~~--------------------~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~S 420 (1466)
T PTZ00265 363 NRKPLVENN--------------------D-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGES 420 (1466)
T ss_pred cCCCCCCCC--------------------C-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCC
Confidence 322110000 0 0000111 13699999999998532 46999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEEe-eccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHH
Q 040758 536 GSGKTSLLRAMAGLWSDGRGKITFY-VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614 (788)
Q Consensus 536 GsGKSTLl~lL~gl~~p~~G~I~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 614 (788)
|||||||+++|+|+|+|++|+|+++ |.+..++ +...+|++||||+|+|.||++||+
T Consensus 421 GsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-----------------------~~~~lr~~Ig~V~Q~~~LF~~TI~ 477 (1466)
T PTZ00265 421 GCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-----------------------NLKWWRSKIGVVSQDPLLFSNSIK 477 (1466)
T ss_pred CCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC-----------------------CHHHHHHhccEecccccchhccHH
Confidence 9999999999999999999999994 2322211 223457789999999999999999
Q ss_pred HHhcCCCCcc-cc--------------chh---hHHHHh--cCCccchhhhhhhhhhc---cCCCCCChHHHHHHHHhcc
Q 040758 615 QQLIYPTWTE-EV--------------KPA---SDAAKS--AGLVPFLTSAQKLENVG---RKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 615 eNi~~~~~~~-~~--------------~~~---~~aa~~--~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~ 671 (788)
|||.|+.... .. .+. .+.++. .....-+.......... ......+++++.++++.++
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 9999974210 00 000 000000 00000000000000000 0112356788999999999
Q ss_pred ccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEe
Q 040758 672 LGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVG 745 (788)
Q Consensus 672 l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~Ia 745 (788)
++.++.. ++||+|. ++.|.+|||||||||+|||||+++|+|||||||||+||+++|+.+++.|++ .|+|+|+||
T Consensus 558 l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIs 637 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637 (1466)
T ss_pred cHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 9876654 5899997 899999999999999999999999999999999999999999999999875 389999999
Q ss_pred cCcchhhcCCEEEEEccC
Q 040758 746 HRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 746 Hr~~~~~~~D~Ilvl~~g 763 (788)
||+++++.||+|++|++|
T Consensus 638 Hrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 638 HRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCHHHHHhCCEEEEEeCC
Confidence 999999999999999997
No 35
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=6.8e-61 Score=610.11 Aligned_cols=473 Identities=18% Similarity=0.208 Sum_probs=326.0
Q ss_pred HHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
.+.+|..+|.++.+.++ |+. + .+|+++|++.+...+...+..++..++.+++.+++++..+|+++++++...+
T Consensus 1030 ~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~ 1109 (1560)
T PTZ00243 1030 SRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGY 1109 (1560)
T ss_pred HHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999987665 543 2 3899999999998776666677777777777766777777654433332222
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
++..+..++.+..+...+......+.+.+.+.|+++++++||+|+.|+.+.+++.++.+...+.................
T Consensus 1110 ~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~ 1189 (1560)
T PTZ00243 1110 LYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVE 1189 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555544444556677788889999999999999999888765555555444433322222222222222
Q ss_pred HHHHHHHHHHHHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 388 GYRYLIQILPAAVVAPM--YFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l--~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
.+..+..++..++++.. ...+.+++|.+..++.+...+...+.+++..+..+.......+|+.++.+....++.....
T Consensus 1190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~ 1269 (1560)
T PTZ00243 1190 FLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELD 1269 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 22222221111222222 2234578887766666666777777777777766777777788887765321111000000
Q ss_pred chhhhhhhh---ccccCC---CCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcH
Q 040758 466 EPLEKICLT---YCSVKS---FPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGK 539 (788)
Q Consensus 466 ~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGK 539 (788)
...+..... ..+... ..........+.....|.|+|+||+|+|+++.+++|+|+||+|++||++||||+|||||
T Consensus 1270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGK 1349 (1560)
T PTZ00243 1270 EEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGK 1349 (1560)
T ss_pred ccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCH
Confidence 000000000 000000 00000000001112346899999999997644569999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcC
Q 040758 540 TSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY 619 (788)
Q Consensus 540 STLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~ 619 (788)
|||+++|+|+|+|++|+|++||.|..++ +.+.+|+.|++|||||+||+|||||||..
T Consensus 1350 STLl~lLlrl~~p~~G~I~IDG~di~~i-----------------------~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1350 STLLLTFMRMVEVCGGEIRVNGREIGAY-----------------------GLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEEcccC-----------------------CHHHHHhcceEECCCCccccccHHHHhCc
Confidence 9999999999999999999976654443 23456888999999999999999999965
Q ss_pred CCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHH
Q 040758 620 PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQ 697 (788)
Q Consensus 620 ~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQr 697 (788)
.. . .++++++++++.+++++++.. ++||||. +|.|.+||||||
T Consensus 1407 ~~-~----------------------------------~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1407 FL-E----------------------------------ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred cc-C----------------------------------CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 31 1 345677777777777655444 5899997 899999999999
Q ss_pred HHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 698 QRLAFARLLLSK-PQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 698 QRiaIARALl~~-p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||+|||||+++ |+|||||||||+||+++|+.|++.|++ .++|+|+||||++++..||+|+||++|+.
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~V 1522 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAV 1522 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEE
Confidence 999999999996 999999999999999999999999986 58999999999999999999999999965
No 36
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=6.7e-61 Score=610.98 Aligned_cols=446 Identities=18% Similarity=0.213 Sum_probs=297.4
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.+|..+|.++.+.++ |+. | .+|+++|++.+.......+..++..++.+++.+++++.++|+..++++...
T Consensus 984 ~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~ 1063 (1622)
T PLN03130 984 AAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLL 1063 (1622)
T ss_pred HHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688889999987665 543 3 389999999998866656666777777766666666666653332222221
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE-FF 385 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 385 (788)
+++.++..++.+..++..+......+.+.+.+.|+++++++||+|+.++... +.+.+..+...+......... +.
T Consensus 1064 ~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~wl 1139 (1622)
T PLN03130 1064 VLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA----EINGRSMDNNIRFTLVNMSSNRWL 1139 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222333333333333344455667777899999999999999876443 333333322221111111001 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-c--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 040758 386 TSGYRYLIQILPAAVVAPMYFSG-K--------IEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVL 456 (788)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~G-~--------it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~ 456 (788)
......+..++.++.+.+.+..+ . .++|.+..+ ...+...+.++...+..+.......+|+.++.+..
T Consensus 1140 ~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~---~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1140 AIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11111111111112222223322 1 334443322 22233333344333344445556677776654322
Q ss_pred ccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCC
Q 040758 457 DSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSG 536 (788)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sG 536 (788)
.+.... . +.....+..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||
T Consensus 1217 ~E~~~~-----~----------------~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSG 1275 (1622)
T PLN03130 1217 SEAPLV-----I----------------ENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTG 1275 (1622)
T ss_pred Cccccc-----c----------------cCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCC
Confidence 111000 0 0000001112356899999999997544579999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHH
Q 040758 537 SGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616 (788)
Q Consensus 537 sGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 616 (788)
||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|++|||||+||+||||||
T Consensus 1276 SGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i-----------------------~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1276 AGKSSMLNALFRIVELERGRILIDGCDISKF-----------------------GLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCEecccC-----------------------CHHHHHhccEEECCCCccccccHHHH
Confidence 9999999999999999999999976655444 23456888999999999999999999
Q ss_pred hcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCCh
Q 040758 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSL 694 (788)
Q Consensus 617 i~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSG 694 (788)
|.++. . .++++++++++.+++++++.. ++||||. +|+|.+|||
T Consensus 1333 Ld~~~-~----------------------------------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1333 LDPFN-E----------------------------------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred hCcCC-C----------------------------------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 98763 1 244566666666666554443 4799997 899999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 695 GQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||||||||+++|+|||||||||+||+++|+.|++.|++ +++|+|+||||++++..||||+||++|+.
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRV 1450 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999986 68999999999999999999999999975
No 37
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.5e-61 Score=523.69 Aligned_cols=512 Identities=21% Similarity=0.225 Sum_probs=362.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGG-IPFFVLRDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~ 234 (788)
++.+.+++++..++.+..|+++=.++|.+. +.+...+ .++.+++++ .++..+..++...+..|. ...+
T Consensus 25 ~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TL-----v~Ltvlal~ly~~~glLd~iR~~~l~Ri-----g~~l 94 (580)
T COG4618 25 FIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTL-----VMLTVLALGLYAFQGLLDAIRSRVLVRI-----GERL 94 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 556677788888888999999999999754 4443322 111111111 111112222222222221 1224
Q ss_pred HHHhhhhhHHHHhcCCCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSIIDN---PDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~~~~---~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
++.+...+|.-.-+.+...+ ...-..+|.++++++.++.....+...--+-.++.++|.++||+.++.++..++.+.
T Consensus 95 D~~L~~~v~~a~~~~~l~~~~~g~~~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~ 174 (580)
T COG4618 95 DRQLNGPVFAASFSAPLLRRGSGDGLQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVV 174 (580)
T ss_pred HHHhccHHHHHHHhhHHhhcCCCccccchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665533322111 122456799999998765433322221111224456677899998888776665555
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLIS----SRNLEFFTS 387 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 387 (788)
++++-...-++..++..+....-+........|+|+|++.|...... ++|.+.+..+...... ...+....-
T Consensus 175 la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~----~rW~~~~~~~L~~~~~asd~~~~~~~~Sr 250 (580)
T COG4618 175 LALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLA----KRWGRFNAAYLSAQERASDRNGAFGALSR 250 (580)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44322222122122222222333333456788999999999987766 4666655554433322 223334444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCch
Q 040758 388 GYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~ 467 (788)
.+..+.+...+++++|+++.|++|-|.+.+......+.+.++-..+..+..+........|+.++........
T Consensus 251 ~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~------- 323 (580)
T COG4618 251 ALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA------- 323 (580)
T ss_pred HHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-------
Confidence 5567777778888999999999999999887777888888888888888888888888999987654322111
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
...+.+.+++.+.+|++++.-|+.++++|+|+||++++||.+|||||||||||||.|+|.
T Consensus 324 --------------------~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 324 --------------------ERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred --------------------CCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHH
Confidence 112233467889999999988887889999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccc
Q 040758 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK 627 (788)
Q Consensus 548 gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~ 627 (788)
|.|+|.+|.|++||.| ++ . .+.+.+-++|||+|||..||+|||+|||+--..+.+.+
T Consensus 384 G~w~p~~G~VRLDga~---l~------------q--------Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~ 440 (580)
T COG4618 384 GIWPPTSGSVRLDGAD---LR------------Q--------WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPE 440 (580)
T ss_pred cccccCCCcEEecchh---hh------------c--------CCHHHhccccCcCcccceecCCcHHHHHHhccccCCHH
Confidence 9999999999996443 31 1 23345678899999999999999999997544455666
Q ss_pred hhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 628 PASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 628 ~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
.+++|||.++.|+.+.. .++||||. ++.|..|||||||||++||||
T Consensus 441 kIieAA~lAgvHelIl~---------------------------------lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 441 KVIEAARLAGVHELILR---------------------------------LPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred HHHHHHHHcChHHHHHh---------------------------------CcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 78888888877655422 34899997 999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+.||.+++||||-|+||.+.|+.+.+++. +.|.|+|+||||++.+..+|+|++|++|..
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 99999999999999999999999999875 479999999999999999999999999964
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.7e-60 Score=602.90 Aligned_cols=449 Identities=19% Similarity=0.234 Sum_probs=299.1
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.+|.++|.++.+.++ |+. + .+|+++|++.+...+...+..++..++.+++.+++++.++++..++++...
T Consensus 981 ~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 1060 (1495)
T PLN03232 981 AAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLL 1060 (1495)
T ss_pred HHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999987765 443 3 389999999998876665566666666665555555555543322222111
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE-FF 385 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 385 (788)
+++.++..++.+..+...+......+.+.+.+.|+++++++||+|+.++...+ ++.+..+...+......... +.
T Consensus 1061 ~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~wl 1136 (1495)
T PLN03232 1061 ILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAK----INGKSMDNNIRFTLANTSSNRWL 1136 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222333334444455566777778999999999999999865443 33333332222111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCcc----cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccc
Q 040758 386 TSGYRYLIQILPAAVVAPMYF-SGKI----EFG-VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSS 459 (788)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~-~G~i----t~G-~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~ 459 (788)
......+..++.++.+.+.+. .|.+ +++ .+...+.+...+...+.++...+..+.......+|+.++.+...+.
T Consensus 1137 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~ 1216 (1495)
T PLN03232 1137 TIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEA 1216 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 111111111111111222222 2322 111 2222333334444455555555555555566677877664322111
Q ss_pred cCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcH
Q 040758 460 SSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGK 539 (788)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGK 539 (788)
.. .. ......+..+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||||||||
T Consensus 1217 ~~---~~------------------~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGK 1275 (1495)
T PLN03232 1217 TA---II------------------ENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275 (1495)
T ss_pred cc---cc------------------cCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCH
Confidence 00 00 0000000112346799999999996545679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcC
Q 040758 540 TSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY 619 (788)
Q Consensus 540 STLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~ 619 (788)
|||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|++|||||+||+|||||||.+
T Consensus 1276 STL~~lL~rl~~p~~G~I~IdG~di~~i-----------------------~~~~lR~~i~iVpQdp~LF~gTIr~NL~~ 1332 (1495)
T PLN03232 1276 SSMLNALFRIVELEKGRIMIDDCDVAKF-----------------------GLTDLRRVLSIIPQSPVLFSGTVRFNIDP 1332 (1495)
T ss_pred HHHHHHHhCCCcCCCceEEECCEEhhhC-----------------------CHHHHHhhcEEECCCCeeeCccHHHHcCC
Confidence 9999999999999999999976654444 23356888999999999999999999987
Q ss_pred CCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHH
Q 040758 620 PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQ 697 (788)
Q Consensus 620 ~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQr 697 (788)
+. . .++++++++++.+++.++... ++||||. +|.|.+||||||
T Consensus 1333 ~~-~----------------------------------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1333 FS-E----------------------------------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred CC-C----------------------------------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 53 2 245666777777777654444 4899997 899999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 698 QRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 698 QRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||+|||||+++|+|||||||||+||+++|+.|++.|++ +++|+|+||||++++..||+|+||++|+.
T Consensus 1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447 (1495)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999986 58999999999999999999999999975
No 39
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-61 Score=511.33 Aligned_cols=408 Identities=19% Similarity=0.239 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhc
Q 040758 273 FSLTLFNAAVDLISFSNILYG-IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFY 351 (788)
Q Consensus 273 ~~~~ii~~~i~~i~~~~il~~-~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f 351 (788)
.+..++..++.+...+++++. ++||..++.++.+.++.+++.....+-....+...++.++....-.+++-|.++||.|
T Consensus 59 ~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F 138 (497)
T COG5265 59 ILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYF 138 (497)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeec
Confidence 445566666666666555544 5688888777777777777665555544444444555556666667999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Q 040758 352 AGEDNEMQLLLQRFRSAFENLTRLLISS----RNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILG 427 (788)
Q Consensus 352 ~~e~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~ 427 (788)
+.|++|.. +|....+.+.+...+. ..+++.+..+........+...+..+..|.+|+|+++..-.+..++..
T Consensus 139 ~ne~~e~~----r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~ 214 (497)
T COG5265 139 GNEEYEAV----RYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSI 214 (497)
T ss_pred Cchhhhhh----hcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhh
Confidence 99999985 6666666665554433 222222222222212222233455677899999998766556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCc-CCCCcEEEeeeEE
Q 040758 428 DFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPE-KSQKLLDIEDLTL 506 (788)
Q Consensus 428 ~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~~~nvsf 506 (788)
++..+...++.+.+...-++++. ++++.+.... + .++.++.. ...+.+.|+||+|
T Consensus 215 Plnflg~~Yrei~q~ltdme~mf---dLl~~~~~v~--d-------------------~pda~~L~~~~~g~v~F~~V~F 270 (497)
T COG5265 215 PLNFLGFSYREIRQALTDMEKMF---DLLDVEAEVS--D-------------------APDAPPLWPVRLGAVAFINVSF 270 (497)
T ss_pred hhhhhHHHHHHHHHhhhhHHHHH---Hhhccchhhc--c-------------------CCCCccccccccceEEEEEEEe
Confidence 66666666655555444344333 3333221110 0 00011111 2356799999999
Q ss_pred EcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccccccc
Q 040758 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586 (788)
Q Consensus 507 ~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 586 (788)
.|.. .+++|+++||++++|+++|+|||||+||||++++|.||||+++|.|.+||.|..++
T Consensus 271 ~y~~-~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v------------------- 330 (497)
T COG5265 271 AYDP-RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV------------------- 330 (497)
T ss_pred eccc-cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh-------------------
Confidence 9974 78999999999999999999999999999999999999999999999965544333
Q ss_pred chhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHH
Q 040758 587 ELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA 666 (788)
Q Consensus 587 ~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 666 (788)
....+|+.||+||||..||++|+..||.||.+..+.+++.+||+.+..++|+..
T Consensus 331 ----tq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~---------------------- 384 (497)
T COG5265 331 ----TQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS---------------------- 384 (497)
T ss_pred ----HHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHh----------------------
Confidence 223567889999999999999999999999998888888888887777666533
Q ss_pred HHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEE
Q 040758 667 LEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYIS 743 (788)
Q Consensus 667 l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~ 743 (788)
.|+||++. +|+|-.|||||||||||||+++++|+||+|||||||||..+|++|+.+|++ .|+|.++
T Consensus 385 -----------lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlv 453 (497)
T COG5265 385 -----------LPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLV 453 (497)
T ss_pred -----------CchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEE
Confidence 23799996 999999999999999999999999999999999999999999999999986 7999999
Q ss_pred EecCcchhhcCCEEEEEccCCC
Q 040758 744 VGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|+||++++-.||.|+||++|..
T Consensus 454 iahrlsti~~adeiivl~~g~i 475 (497)
T COG5265 454 IAHRLSTIIDADEIIVLDNGRI 475 (497)
T ss_pred EeehhhhccCCceEEEeeCCEE
Confidence 9999999999999999999975
No 40
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.3e-58 Score=535.99 Aligned_cols=510 Identities=15% Similarity=0.169 Sum_probs=333.9
Q ss_pred HHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 136 RFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVG-FNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLR 214 (788)
Q Consensus 136 ~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~-~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 214 (788)
.++++++++++ .+++.++++++..++.+. .|++.+.++|.+.. +...+ ..+++++++..++.++.
T Consensus 3 ~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~----~~~~~~~~~~~~~~~~~ 68 (547)
T PRK10522 3 LLRLVWRQYRW---------PFISVMALSLASAALGIGLIAFINQRLIETADT-SLLVL----PEFLGLLLLLMAVTLGS 68 (547)
T ss_pred hHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHH----HHHHHHHHHHHHHHHHH
Confidence 35566666665 356666667777777776 47788889986532 21111 11111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 215 DYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISF 287 (788)
Q Consensus 215 ~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~ 287 (788)
.+. ..+. ...+.+.+|..+|.++.+.+. +++. .+|+++|++.+...+. .+..++..++.++++
T Consensus 69 ~~~--------~~~~-~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~ 138 (547)
T PRK10522 69 QLA--------LTTL-GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGS 138 (547)
T ss_pred HHH--------HHHH-HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 111 1222 223556789999999988775 3322 3799999999987543 345567777777777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHH
Q 040758 288 SNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRS 367 (788)
Q Consensus 288 ~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~ 367 (788)
+++|++++|++++++++..++.+++..++.++..+...+.++..+++...+.|..+++++++ ++.+..+ +.+.++|++
T Consensus 139 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~-~~~~~~~~~ 216 (547)
T PRK10522 139 AAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAE-YVFENEYEP 216 (547)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHH-HHHHHHHhH
Confidence 78888999999998888888887888888888887777777888888888899999999995 5444321 223356665
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 368 AFENLTRLLISSRNLEFFTSGYRYLIQILP-AAVVAPMYFSGKI---EFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~i---t~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+........ ..+..++. .++++++++.|.. +.+.+..+..+...+..++..+...+..+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSA---VNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443322222111111 11111111 1222233333322 222222222222223344444444444555566
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
...+|+.++.+ .+...+.. ..... ...+.|+++||+|+||+ ++++|+|+||+|
T Consensus 294 ~a~~ri~~l~~---~~~~~~~~----------------------~~~~~-~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i 346 (547)
T PRK10522 294 VAFNKLNKLAL---APYKAEFP----------------------RPQAF-PDWQTLELRNVTFAYQD-NGFSVGPINLTI 346 (547)
T ss_pred HHHHHHHHHhc---cccccccc----------------------ccccc-CcCceEEEEEEEEEeCC-CCeEEecceEEE
Confidence 66777765422 11100000 00000 11246999999999984 457999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +...+|++|+||+
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~ 403 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE-----------------------QPEDYRKLFSAVF 403 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCC-----------------------CHHHHhhheEEEe
Confidence 99999999999999999999999999999999999965543322 1224567899999
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD 683 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 683 (788)
||+++|++|+++| +. . .+++++.+.++.++++......+|.
T Consensus 404 q~~~lf~~ti~~n---~~-~----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~- 444 (547)
T PRK10522 404 TDFHLFDQLLGPE---GK-P----------------------------------ANPALVEKWLERLKMAHKLELEDGR- 444 (547)
T ss_pred cChhHHHHhhccc---cC-c----------------------------------hHHHHHHHHHHHcCCchhhhccccC-
Confidence 9999999999998 11 1 1234556667776665443322221
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcchhhcCCEEEE
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
..|.+||||||||++|||||+++|++||||||||+||+++|+.+.+.+.+ .++|+|+||||+++.+.||+|++
T Consensus 445 ---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~ 521 (547)
T PRK10522 445 ---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE 521 (547)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE
Confidence 13678999999999999999999999999999999999999999888752 48999999999999999999999
Q ss_pred EccCCCC
Q 040758 760 ISTVDQN 766 (788)
Q Consensus 760 l~~g~~~ 766 (788)
|++|+..
T Consensus 522 l~~G~i~ 528 (547)
T PRK10522 522 MRNGQLS 528 (547)
T ss_pred EECCEEE
Confidence 9999754
No 41
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.8e-57 Score=576.57 Aligned_cols=463 Identities=17% Similarity=0.200 Sum_probs=318.4
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.++..+|.++.+.++ |+. | .+|+++|+..+...+...+..++..++.+++.++++++++|+++++++..+
T Consensus 956 ~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~ 1035 (1490)
T TIGR01271 956 VSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVA 1035 (1490)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887765 443 3 379999999998877766677777777777777777888887765544443
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT 386 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (788)
++++++..++.+..+...+......+.+...+.|++.++.+||+|+.++.+.+++.+..+.............+.+....
T Consensus 1036 ~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 1115 (1490)
T TIGR01271 1036 VIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRI 1115 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444444444455566777888999999999999999988776554444433222222111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCc
Q 040758 387 SGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSE 466 (788)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~ 466 (788)
. .+..++.++++...+....++.|.+...+.++..+...+.+++..+..+.......+|+.++.+...+.... ...
T Consensus 1116 ~---~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~-~~~ 1191 (1490)
T TIGR01271 1116 D---IIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRP-SGG 1191 (1490)
T ss_pred H---HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-ccc
Confidence 1 111111111111111122334444443444445555566666665555666666778887765432211100 000
Q ss_pred hhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 040758 467 PLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546 (788)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL 546 (788)
. . .+.... .........++..+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|
T Consensus 1192 ~--~---~~~~~~-~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1192 G--G---KYQLST-VLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred c--c---cccccc-ccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 0 0 000000 000000000001123578999999999986567899999999999999999999999999999999
Q ss_pred hcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcccc
Q 040758 547 AGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV 626 (788)
Q Consensus 547 ~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~ 626 (788)
+|+|+ ++|+|++||.|..++ +.+.+|++|+||||||+||+||||+||....
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i-----------------------~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~----- 1316 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSV-----------------------TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE----- 1316 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccC-----------------------CHHHHHhceEEEeCCCccCccCHHHHhCccc-----
Confidence 99998 799999976654443 2335688899999999999999999995421
Q ss_pred chhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHH
Q 040758 627 KPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFAR 704 (788)
Q Consensus 627 ~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIAR 704 (788)
..++++++++|+.+++...... ++|+|+. +|.|.+|||||||||+|||
T Consensus 1317 ------------------------------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1317 ------------------------------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred ------------------------------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 1356788888888888765554 4899997 8999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 705 LLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 705 ALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||+++|+|||||||||+||+++++.|++.|++ .++|+|+||||++++..||+|++|++|+.
T Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~i 1429 (1490)
T TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429 (1490)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999986 68999999999999999999999999975
No 42
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.1e-56 Score=564.10 Aligned_cols=496 Identities=16% Similarity=0.139 Sum_probs=334.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWR-SWMTKYYME 235 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~~ 235 (788)
++..+++.++...+.+..|++++.++|.+..++.. +.... ++++++++.++..+ .... .+. .......+.
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~---~~~~---~~~~~~~~~~~ir 373 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA--WVGYV-YAFLIFFGVTFGVL---CESQ---YFQNVGRVGFRLR 373 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--chHHH-HHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHH
Confidence 44455556677778889999999999987654421 11111 11111111111111 1100 000 011222345
Q ss_pred HHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--
Q 040758 236 RYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS-- 306 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~-- 306 (788)
..++..+|+|+.+++. +++. .+++++|++.+.+.. ..+..++...+.++..+++++ +.+.+.+++.+
T Consensus 374 ~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v 449 (1495)
T PLN03232 374 STLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLI 449 (1495)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHH
Confidence 5677788999887765 2221 379999999998864 344445555544444333332 22332222111
Q ss_pred -HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 040758 307 -IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFF 385 (788)
Q Consensus 307 -~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (788)
++.+.+..++.++..+..++..+...+....+.|..+++++||.|+.|+.+.++ +++..++..+...+.......
T Consensus 450 ~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~----~~~~r~~e~~~~~~~~~~~~~ 525 (1495)
T PLN03232 450 LFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESR----IQGIRNEELSWFRKAQLLSAF 525 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 122223445667776666666666666677778999999999999999877654 444333322222222222211
Q ss_pred HHHHHHHHH-HH-HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCC
Q 040758 386 TSGYRYLIQ-IL-PAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKN 463 (788)
Q Consensus 386 ~~~~~~~~~-~~-~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~ 463 (788)
...+..... ++ .+.++++.+.+|.+|.|.+.+++.++..+..++..+...+..+......++|+.++.+. ++...
T Consensus 526 ~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~---~~~~~ 602 (1495)
T PLN03232 526 NSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS---EERIL 602 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ccccc
Confidence 111111111 11 13345667778899999998888888888888877777667777778888888776432 11000
Q ss_pred CCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHH
Q 040758 464 LSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSL 542 (788)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTL 542 (788)
.. .+ ......+.|+++|++|+|+++ ++++|+|+||+|++||+++||||||||||||
T Consensus 603 --~~------------~~---------~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTL 659 (1495)
T PLN03232 603 --AQ------------NP---------PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSL 659 (1495)
T ss_pred --cc------------cC---------CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHH
Confidence 00 00 000112369999999999752 4679999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCC
Q 040758 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTW 622 (788)
Q Consensus 543 l~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~ 622 (788)
+++|+|+++|++|.+.. +|++|+||+|+|++|++||||||.||.+
T Consensus 660 l~lLlG~~~~~~G~i~~-----------------------------------~~~~Iayv~Q~p~Lf~gTIreNI~fg~~ 704 (1495)
T PLN03232 660 ISAMLGELSHAETSSVV-----------------------------------IRGSVAYVPQVSWIFNATVRENILFGSD 704 (1495)
T ss_pred HHHHhCCCcccCCCEEE-----------------------------------ecCcEEEEcCccccccccHHHHhhcCCc
Confidence 99999999999987742 2456999999999999999999999853
Q ss_pred ccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHH
Q 040758 623 TEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRL 700 (788)
Q Consensus 623 ~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRi 700 (788)
. +++++.++++.+++.+... .++|++|. +|+|.+|||||||||
T Consensus 705 ~-----------------------------------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 749 (1495)
T PLN03232 705 F-----------------------------------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV 749 (1495)
T ss_pred c-----------------------------------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH
Confidence 1 3355666777777654333 35899997 999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH-HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQ-IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~-L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+||||++++|+|+||||||||||+++++.+.+. ++. +++|+|+||||++.++.||+|++|++|+.
T Consensus 750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMI 817 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999988765 443 68999999999999999999999999864
No 43
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.6e-55 Score=561.77 Aligned_cols=497 Identities=15% Similarity=0.133 Sum_probs=336.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVL--RDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~ 234 (788)
+++.+++.++..++.+..|++++.++|.+..++.. +...++. ++++++.++..+ ..+... .......+
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~--~~~~~~~-~~l~~~~~~~~~~~~~~~~~-------~~~~~~~i 372 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA--WIGYIYA-FSIFVGVVLGVLCEAQYFQN-------VMRVGFRL 372 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 44555566677778889999999999988654421 1111111 111111111110 011100 11122335
Q ss_pred HHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
...++..+|.|+.+++. +.+ . .+++++|++.+.... ..+..++...+.++..+++++..-++..++.++.++
T Consensus 373 r~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~ 451 (1622)
T PLN03130 373 RSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLV 451 (1622)
T ss_pred HHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788999887765 222 1 378999999998865 344555555555544444443322222222222222
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
+.+.+..++.++..+..++..+...+....+.|.++++++||.|+.|+...+ ++.+..+...+..++.........
T Consensus 452 l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~----~i~~~r~~e~~~~~~~~~~~~~~~ 527 (1622)
T PLN03130 452 LMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQS----KVQTVRDDELSWFRKAQLLSAFNS 527 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566666666655666666666777899999999999999987664 444333332222222222222211
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 388 GYRYLIQ--ILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 388 ~~~~~~~--~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
.+..... +..+.++++.+.+|.+|.|.+..++.++..+..++..+...+..+......++|+.++.+..+.. ...
T Consensus 528 ~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~---~~~ 604 (1622)
T PLN03130 528 FILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV---LLP 604 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc---ccc
Confidence 1111111 12233456677789999999888888888777777776666667777778888887764321100 000
Q ss_pred chhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHH
Q 040758 466 EPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLR 544 (788)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~ 544 (788)
. + ......+.|+++|++|+|+++ ++++|+|+||+|++||.++||||||||||||++
T Consensus 605 ~--------------~---------~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~ 661 (1622)
T PLN03130 605 N--------------P---------PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLIS 661 (1622)
T ss_pred C--------------C---------cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 0 0 000112469999999999743 367999999999999999999999999999999
Q ss_pred HHhcCCCCCC-ceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCc
Q 040758 545 AMAGLWSDGR-GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWT 623 (788)
Q Consensus 545 lL~gl~~p~~-G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~ 623 (788)
+|+|+++|++ |+|.+ +++|+||+|+|++|++||||||.||.+.
T Consensus 662 lLlG~~~~~~GG~I~l------------------------------------~~~Iayv~Q~p~LfngTIreNI~fg~~~ 705 (1622)
T PLN03130 662 AMLGELPPRSDASVVI------------------------------------RGTVAYVPQVSWIFNATVRDNILFGSPF 705 (1622)
T ss_pred HHHHhhccCCCceEEE------------------------------------cCeEEEEcCccccCCCCHHHHHhCCCcc
Confidence 9999999999 99975 3459999999999999999999998542
Q ss_pred cccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHH
Q 040758 624 EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLA 701 (788)
Q Consensus 624 ~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRia 701 (788)
+++++.++++.+++...+.. ++|++|. +|+|.+|||||||||+
T Consensus 706 -----------------------------------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 706 -----------------------------------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred -----------------------------------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 23566677777777654443 5899997 9999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHH-HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 702 FARLLLSKPQIVLLDESTSALDEANEAHLYEQ-IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 702 IARALl~~p~iLiLDEpTSaLD~~se~~i~~~-L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||++++|+|+||||||||||+++++.+.+. ++. +|+|+|+||||++.++.||+|++|++|+.
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999988654 543 68999999999999999999999999864
No 44
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.4e-56 Score=543.18 Aligned_cols=450 Identities=20% Similarity=0.254 Sum_probs=341.7
Q ss_pred HHhhhhhHHHHhcCC--CCC-Cch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQS--IID-NPD----QRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~--~~~-~~~----~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
+.|.+.++..+.+.| +|| +|. ||.+.|++.+-...-..+..++..++.++++++++....||.+++++...++
T Consensus 891 ~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~ 970 (1381)
T KOG0054|consen 891 RKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVI 970 (1381)
T ss_pred HHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Confidence 334445555665544 455 343 7999999999877766777788888888888888888888887777777777
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSG 388 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (788)
+.++-.++.+..+.+.+.....++-+.+++.|+++++.+||+|+.|+++.+.+..+.+...+.+.-.....+.+......
T Consensus 971 ~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ 1050 (1381)
T KOG0054|consen 971 YYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLEL 1050 (1381)
T ss_pred HHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776676666666677778888899999999999999998877655444444444333333333444444443
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchh
Q 040758 389 YRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPL 468 (788)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~ 468 (788)
++.+..+.... .+.+...+.++.|.+...+++..++.+.+.+++.....+.....+.+|+.++.++..+++..
T Consensus 1051 ig~~~v~~~al-~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~------ 1123 (1381)
T KOG0054|consen 1051 LGNLVVLIAAL-FAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE------ 1123 (1381)
T ss_pred HHHHHHHHHHH-HHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC------
Confidence 33322221111 11222222266787777777777888888888877766666666788888776543321100
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 469 EKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.. ...+++..+.+|.|+|+|++.+|.++..+||+||||+|+|||++||||++|||||||+++|-|
T Consensus 1124 --------------~~-~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFR 1188 (1381)
T KOG0054|consen 1124 --------------IE-ESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFR 1188 (1381)
T ss_pred --------------Cc-CCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 00 000112234678999999999997666789999999999999999999999999999999999
Q ss_pred CCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccch
Q 040758 549 LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKP 628 (788)
Q Consensus 549 l~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~ 628 (788)
+.+|.+|+|.+||.|..++ .+.++|++++++||||.||+||+|.|+. +
T Consensus 1189 l~e~~~G~I~IDgvdI~~i-----------------------gL~dLRsrlsIIPQdPvLFsGTvR~NLD---P------ 1236 (1381)
T KOG0054|consen 1189 LVEPAEGEILIDGVDISKI-----------------------GLHDLRSRLSIIPQDPVLFSGTVRFNLD---P------ 1236 (1381)
T ss_pred hcCccCCeEEEcCeecccc-----------------------cHHHHHhcCeeeCCCCceecCccccccC---c------
Confidence 9999999999976665544 3446788899999999999999999983 1
Q ss_pred hhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 629 ASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 629 ~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
| .+.+|++++++||.+++..... .++|+|+. .|.|.++|-||||.+++||||
T Consensus 1237 ------------f--------------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1237 ------------F--------------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred ------------c--------------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 1 1357899999999999977554 46889997 899999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++++||+|||||+++|++|...||+.+++ +++|||.||||+.++-.||||+||++|+.
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v 1351 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRV 1351 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeE
Confidence 999999999999999999999999999997 69999999999999999999999999974
No 45
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1e-50 Score=518.02 Aligned_cols=503 Identities=15% Similarity=0.126 Sum_probs=329.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
++..+++.++..++.+..|++++.++|.+...+... ....++.++++++.++..++. .. . .+........+..
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~ir~ 391 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPD-WQGYFYTGLLFVCACLQTLIL----HQ-Y-FHICFVSGMRIKT 391 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-chHHHHHHHHHHHHHHHHHHH----HH-H-HHHHHHHHHHHHH
Confidence 444556667777888999999999999775443211 111111111111111111111 00 0 0111112233556
Q ss_pred HhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040758 237 YLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGG 309 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~ 309 (788)
.++..+|.|+.+++. +++. .+++++|++.+.... ..+..++...+.++..+++++..-.+.+++.++.+++.
T Consensus 392 ~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~ 470 (1522)
T TIGR00957 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLM 470 (1522)
T ss_pred HHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677888999988765 2221 379999999988743 34445555555555444444433333333333334444
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040758 310 TAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGY 389 (788)
Q Consensus 310 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (788)
+.+..++.+++.+......+...+....+.|..+++++||.|+.|+...++ +++..+...+..+............
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~----i~~~r~~e~~~~~~~~~~~~~~~~~ 546 (1522)
T TIGR00957 471 VPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDK----VEGIRQEELKVLKKSAYLHAVGTFT 546 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666778999999999999999877654 4333333222222222222222221
Q ss_pred HHHHHHHHH--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 390 RYLIQILPA--AVVAPMYFS--GKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 390 ~~~~~~~~~--~~~~~l~~~--G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
.....++.. .++++.+.. +.++.+.+...+.++..+..++..+...+..+......++|+.++.+..+.... .
T Consensus 547 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~--~- 623 (1522)
T TIGR00957 547 WVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD--S- 623 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--c-
Confidence 111111111 122344443 467888777777777777777777777667777777888888776432111000 0
Q ss_pred chhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 040758 466 EPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545 (788)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~l 545 (788)
.. . .... ....+.|+++|++|+|+++++++|+|+||+|++||+++|+||||||||||+++
T Consensus 624 --~~----------------~-~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~ 683 (1522)
T TIGR00957 624 --IE----------------R-RTIK-PGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSA 683 (1522)
T ss_pred --cc----------------c-cccC-CCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 00 0 0000 00123699999999997544679999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccc
Q 040758 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEE 625 (788)
Q Consensus 546 L~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~ 625 (788)
|+|+++|++|+|.++ .+|+||||+|++|++||+|||.+|....
T Consensus 684 l~g~~~~~~G~i~~~------------------------------------g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~- 726 (1522)
T TIGR00957 684 LLAEMDKVEGHVHMK------------------------------------GSVAYVPQQAWIQNDSLRENILFGKALN- 726 (1522)
T ss_pred HhCCCccCCcEEEEC------------------------------------CEEEEEcCCccccCCcHHHHhhcCCccC-
Confidence 999999999999873 1399999999999999999999975311
Q ss_pred cchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHH
Q 040758 626 VKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFA 703 (788)
Q Consensus 626 ~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIA 703 (788)
+++..++++.+++..... .++|++|. +++|.+|||||||||+||
T Consensus 727 ----------------------------------~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 727 ----------------------------------EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred ----------------------------------HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 122233333333332222 24788886 899999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 704 RLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 704 RALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||++++|+++|||||||+||+++++.+.+.+.+ .++|+|+|||+++.+..||+|++|++|+.
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKI 839 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeE
Confidence 999999999999999999999999999998742 47999999999999888999999999864
No 46
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-50 Score=440.20 Aligned_cols=572 Identities=25% Similarity=0.396 Sum_probs=403.5
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
.+..+.+++-|-..+++.... .+-. ++...-+.+++.++.+-|.++..++.++...|.+.++-|+++.+-+.....
T Consensus 100 ~l~~L~Kilip~vfc~e~gll---~~hs-~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiPAtFvNS 175 (728)
T KOG0064|consen 100 RLNVLSKILIPTVFCKETGLL---TAQS-FFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIPASFVNS 175 (728)
T ss_pred HHHHHHHHhcchHHHHhhhHH---HHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhccHHHHHH
Confidence 355667777787665443211 2222 223344567888899999999999998888888777766554443433444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQS-IIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNIL 291 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~-~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il 291 (788)
+..|+...++..+|+.++.+....|+.+++||++..+. ..+|+|+++|+|+..+...+..+..++...+++++.+.+.+
T Consensus 176 ~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L 255 (728)
T KOG0064|consen 176 AIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTL 255 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56788889999999999999999999999999997754 47899999999999999888888888888999888776665
Q ss_pred HhhhhhH----HHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHH
Q 040758 292 YGIYPPL----FVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRS 367 (788)
Q Consensus 292 ~~~~~~L----~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~ 367 (788)
....... .+++.+.+.+-..+.+.+.+++.++..++..+.+.++..+.+.+.|.|+|++|++.+.|.+.+.+.|..
T Consensus 256 ~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~ 335 (728)
T KOG0064|consen 256 LDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNR 335 (728)
T ss_pred HhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHH
Confidence 4432111 011111112223456678888999988899999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHh-----cCcccH---HH--HHHHHH---HHHHHHHHHHH
Q 040758 368 AFENLTRLLISSRNL---EFFTSGYRYLIQILPAAVVAPMYF-----SGKIEF---GV--INQSVS---AFNHILGDFSL 431 (788)
Q Consensus 368 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~-----~G~it~---G~--l~~~~~---~~~~~~~~l~~ 431 (788)
..+............ .-+..-|.|...-+ ..++.+.+. .|..+. |. ...+.. +......++..
T Consensus 336 L~~qm~li~k~r~~YiMleqF~mKYvWsg~Gl-vmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieR 414 (728)
T KOG0064|consen 336 LVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGL-VMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIER 414 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCce-EEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 766543322211111 11111111100000 000111111 111111 11 111111 11222234456
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhcccccCCCC-Cchh-hhhhhhccccCCCCCCC-CCCCCCCcCCCCcEEEeeeEEEc
Q 040758 432 IVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNL-SEPL-EKICLTYCSVKSFPTSK-CNGALSPEKSQKLLDIEDLTLKT 508 (788)
Q Consensus 432 ~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~~~nvsf~y 508 (788)
++..+..+.++..+..|+.+...++++.....- .... +..... ......... -++.. .......|.++||..-.
T Consensus 415 lMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~--~~~e~r~s~~l~~~~-~i~~~~gI~lenIpvIt 491 (728)
T KOG0064|consen 415 LMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSR--TIDESRNSNPLPTTD-AIRNFNGIILENIPVIT 491 (728)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhcc--CccccccCCcCCccc-hhhcccceEEecCceec
Confidence 677777777777888888876665543321100 0000 000000 000000000 00000 01133469999999999
Q ss_pred CCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 509 PTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 509 ~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
|. ++.++..++|+|++|-++.|+||||||||+|+++|.|+||...|...+
T Consensus 492 P~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~----------------------------- 541 (728)
T KOG0064|consen 492 PA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI----------------------------- 541 (728)
T ss_pred cC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec-----------------------------
Confidence 86 567889999999999999999999999999999999999999998764
Q ss_pred hcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (788)
..+.+|.|+||.||+--||+||+|.||+..+++.+ +...+.++++.|.
T Consensus 542 -----P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~---------------------------kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 542 -----PRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR---------------------------KGYTDQDLEAILD 589 (728)
T ss_pred -----CCCcceEeccCCCccCcCcccceeecCCcHHHHHh---------------------------cCCCHHHHHHHHH
Confidence 11345999999999999999999999976544321 2346789999999
Q ss_pred hcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc
Q 040758 669 DVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR 748 (788)
Q Consensus 669 ~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~ 748 (788)
.+.++++..+-.|+|.+.+|-..||||||||+++||.++++|+.-+|||+|||+.++.|..++++.+..|.+.|.||||+
T Consensus 590 ~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrp 669 (728)
T KOG0064|consen 590 IVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRP 669 (728)
T ss_pred HhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCc
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCEEEEEccCCCCCCCCCeEEEecCcc
Q 040758 749 TLYDFHKRVLRISTVDQNSSQSNWKLEFIDQE 780 (788)
Q Consensus 749 ~~~~~~D~Ilvl~~g~~~~~~~~~~~~~~~~~ 780 (788)
++.+++.+.+.. ++.|+|+++.++.+
T Consensus 670 slwk~h~~ll~~------dg~g~~q~~~ln~~ 695 (728)
T KOG0064|consen 670 SLWKYHTHLLEF------DGEGGWQFRALNTE 695 (728)
T ss_pred cHHHHHHHHHhc------cCCCCeeeccCChh
Confidence 999999988876 36899999999874
No 47
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.4e-48 Score=497.49 Aligned_cols=526 Identities=17% Similarity=0.185 Sum_probs=337.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
+++.+++.++..++.+..|++++.+++.+..++.. ......+.+++++..++..++... . .+........+..
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~-~-----~~~~~r~~~~~r~ 318 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLGLVLTLFLTQLIQSVCLHR-F-----YYISIRCGLQYRS 318 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHH
Confidence 44566667778889999999999999987544321 111111111222111111111100 0 0111111222444
Q ss_pred HhhhhhHHHHhcCCC--CCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 237 YLKDQTFYKIQSQSI--IDNP-------DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~--~~~~-------~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
.|...+|.|..+++. ..++ .+.+++|++.+..+.. ....++...+.++..+++|+.+.+|.+++.++.++
T Consensus 319 ~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~ 397 (1560)
T PTZ00243 319 ALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLL 397 (1560)
T ss_pred HHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677888776554 2211 3788899999998653 44566777777766667777777777776666666
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
+.+.+..++.++.....+...+...+-.....|.+++++.||.++.|+...+ ++++..+.-.+..++......+..
T Consensus 398 v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~----ri~~~R~~El~~l~~~~~~~~~~~ 473 (1560)
T PTZ00243 398 VTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVA----NIEDKRARELRYLRDVQLARVATS 473 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777666555555554445556899999999999999987765 444433322222222222222222
Q ss_pred HHHHHHHHHH--HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCC--C
Q 040758 388 GYRYLIQILP--AAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK--N 463 (788)
Q Consensus 388 ~~~~~~~~~~--~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~--~ 463 (788)
.+......+. +.++++.+.+|.+|.|.+...+.+|+.+..++..+...+..+.....+++|+.++....+..... .
T Consensus 474 ~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 553 (1560)
T PTZ00243 474 FVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQD 553 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 2222222111 12345666788999999998899999888888888777777888888899998876432210000 0
Q ss_pred CCc------------h----hhhhhhh-ccccCCCC---CCC-----------CCC-CCCCcCCCCcEEEeeeEEEcC--
Q 040758 464 LSE------------P----LEKICLT-YCSVKSFP---TSK-----------CNG-ALSPEKSQKLLDIEDLTLKTP-- 509 (788)
Q Consensus 464 ~~~------------~----~~~~~~~-~~~~~~~~---~~~-----------~~~-~~~~~~~~~~I~~~nvsf~y~-- 509 (788)
..+ . +.+..+. +.....+. ... ... ........+.+.++|+++.+|
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1560)
T PTZ00243 554 MEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSS 633 (1560)
T ss_pred chhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccc
Confidence 000 0 0000000 00000000 000 000 000001123456666666432
Q ss_pred ------------------------------------CCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 510 ------------------------------------TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 510 ------------------------------------~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
.+++++|+|+||+|++||+++|+||||||||||+++|+|+++|+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~ 713 (1560)
T PTZ00243 634 ASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS 713 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 12356899999999999999999999999999999999999999
Q ss_pred CceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHH
Q 040758 554 RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633 (788)
Q Consensus 554 ~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa 633 (788)
+|+|.+ ++.||||||+|++|++|++|||.++... +
T Consensus 714 ~G~i~~------------------------------------~~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~-------- 748 (1560)
T PTZ00243 714 EGRVWA------------------------------------ERSIAYVPQQAWIMNATVRGNILFFDEE-D-------- 748 (1560)
T ss_pred CcEEEE------------------------------------CCeEEEEeCCCccCCCcHHHHHHcCChh-h--------
Confidence 999976 1349999999999999999999986421 1
Q ss_pred HhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCC
Q 040758 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQ 711 (788)
Q Consensus 634 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~ 711 (788)
.+++.++++.++++..++. ++|+++. ++++.+|||||||||+|||||+.+|+
T Consensus 749 --------------------------~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ 802 (1560)
T PTZ00243 749 --------------------------AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRD 802 (1560)
T ss_pred --------------------------HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1122233333333333322 3677776 88999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-H--hcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 712 IVLLDESTSALDEANEAHLYEQI-E--AAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 712 iLiLDEpTSaLD~~se~~i~~~L-~--~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++|||||||+||+.+++.+.+.+ . ..|+|+|+|||+++.++.||+|++|++|+.
T Consensus 803 illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 803 VYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859 (1560)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 99999999999999998887643 2 258999999999999999999999999864
No 48
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.8e-49 Score=500.00 Aligned_cols=520 Identities=16% Similarity=0.138 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040758 159 AVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYL 238 (788)
Q Consensus 159 ~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~L 238 (788)
+.+++.++..++.+..|++++.+++.+...+.........+.++++++.+ +..+..... .+........+...+
T Consensus 84 ~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-----~~~~~~~~~~~r~~L 157 (1490)
T TIGR01271 84 FYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFI-VRTLLLHPA-----IFGLHHLGMQMRIAL 157 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 34444556667888999999999998743221111111111111111111 111110000 011111222244445
Q ss_pred hhhhHHHHhcCCC--CCC-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 239 KDQTFYKIQSQSI--IDN-----PDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 239 r~~~f~~l~~~~~--~~~-----~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
...+|+|+.+++. +++ -.+++++|++.+...... ...++...+.++.++++++...+|.+++.++.+++.+.
T Consensus 158 ~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~ 236 (1490)
T TIGR01271 158 FSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLAL 236 (1490)
T ss_pred HHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888877654 222 137999999999885443 34455666666666667777777777666666666677
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRY 391 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (788)
+..++++++.+......+...+....+.|.++++++||.|+.|+.+.+ ++++..+.-.+..++..........+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~----~i~~~R~~El~~~~~~~~~~~~~~~~~~ 312 (1490)
T TIGR01271 237 FQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEK----IIKNIRQDELKLTRKIAYLRYFYSSAFF 312 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888887776666555555556666899999999999999987764 3333333222222221111111111111
Q ss_pred HHHH--HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhhcccccCCC-C---
Q 040758 392 LIQI--LPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFS-LIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKN-L--- 464 (788)
Q Consensus 392 ~~~~--~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~-~--- 464 (788)
+... ..+.++++.+.++ .+.+.+..++.+|..+..++. .+...+..+..+...++|+.++....+...... .
T Consensus 313 ~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~ 391 (1490)
T TIGR01271 313 FSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTT 391 (1490)
T ss_pred HHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC
Confidence 1111 1112233444444 577777666666665555543 344445556667778889888754321110000 0
Q ss_pred CchhhhhhhhccccC-CC-CC-CCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHH
Q 040758 465 SEPLEKICLTYCSVK-SF-PT-SKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTS 541 (788)
Q Consensus 465 ~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKST 541 (788)
.-.+.+..+.++... .. .. .............+.++++|++|.+ +++|+|+||+|++||.++|+|||||||||
T Consensus 392 ~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~l~~i~l~i~~G~~~~I~G~~GsGKST 467 (1490)
T TIGR01271 392 EVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYV----TPVLKNISFKLEKGQLLAVAGSTGSGKSS 467 (1490)
T ss_pred ceEEecceEecCCcccccccccccccccccccccccccccccccccc----CcceeeeEEEECCCCEEEEECCCCCCHHH
Confidence 000111111111000 00 00 0000000000011245555655532 46899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 542 Ll~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
|+++|+|+++|++|+|.++| .|+||+|+|++|++||+|||.||.
T Consensus 468 Ll~~l~G~~~~~~G~i~~~g------------------------------------~iayv~Q~~~l~~~Ti~eNI~~g~ 511 (1490)
T TIGR01271 468 LLMMIMGELEPSEGKIKHSG------------------------------------RISFSPQTSWIMPGTIKDNIIFGL 511 (1490)
T ss_pred HHHHHhCCCCCCCceEEECC------------------------------------EEEEEeCCCccCCccHHHHHHhcc
Confidence 99999999999999999731 399999999999999999999974
Q ss_pred CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHH
Q 040758 622 WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQR 699 (788)
Q Consensus 622 ~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQR 699 (788)
... .++..++++.+++...+.. ++|.+|. +++|.+||||||||
T Consensus 512 ~~~-----------------------------------~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqR 556 (1490)
T TIGR01271 512 SYD-----------------------------------EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRAR 556 (1490)
T ss_pred ccc-----------------------------------hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHH
Confidence 211 1112223333333322222 3677775 89999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH-HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 700 LAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ-IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 700 iaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~-L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|+||||++++|+++||||||||||+++++.+++. +.+ +|+|+|+|||+++.+..||+|++|++|+.
T Consensus 557 i~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 557 ISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVC 625 (1490)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999975 443 58999999999998888999999998863
No 49
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-47 Score=466.63 Aligned_cols=497 Identities=19% Similarity=0.225 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHH
Q 040758 159 AVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFV-LR--DYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 159 ~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~l~~~~~~ 235 (788)
+..++..+...+....|.+++.+++.+.+++.. .+...++.+++++..++-.. .. .+.....+.++|..+...
T Consensus 205 ~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~-~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~--- 280 (1381)
T KOG0054|consen 205 LSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLP-LNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA--- 280 (1381)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhcCCCcc-cchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH---
Confidence 333333444444678899999999988765221 11111222222221111111 11 112234445555544444
Q ss_pred HHhhhhhHHHHhcCCCCC-------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSIID-------NPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~~~-------~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
+|.|..+++-.. .-.+-++.|++.+.+.. .....++...+.++...++|+..-.+-+++-++..++
T Consensus 281 ------IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il 353 (1381)
T KOG0054|consen 281 ------IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVL 353 (1381)
T ss_pred ------HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 444444443321 11367889999998854 4556777777777766666665555544444444455
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSG 388 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (788)
.+.+..+++++..+....+.+...+-.....|.+.||+.||.|+-|+.+.+++ ++..++-.+..++......+...
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I----~~~R~~El~~lrk~~~~~~~~~~ 429 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKI----EDLRQKELKLLRKSAYLSALNSF 429 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666555544444333344579999999999999997766433 22222211111222112222222
Q ss_pred HHHHHHHHHHHH--HHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 389 YRYLIQILPAAV--VAPM-YFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 389 ~~~~~~~~~~~~--~~~l-~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
......++..++ +++. ..++.+|.......+++|+.+..++..+-.....+.++..+++|+.++....+....
T Consensus 430 ~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~---- 505 (1381)
T KOG0054|consen 430 LNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD---- 505 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc----
Confidence 222222211111 1222 234566666666677788888888777666666677777888998877532111100
Q ss_pred chhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHH
Q 040758 466 EPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLR 544 (788)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~ 544 (788)
...+ .+.+..+..++++|.+|+++. +..+.|+||||+|++|+.+||||+.|||||+|+.
T Consensus 506 -~~~~-------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~ 565 (1381)
T KOG0054|consen 506 -SVER-------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLS 565 (1381)
T ss_pred -cccc-------------------CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 0000 011123346999999999975 2445999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcc
Q 040758 545 AMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTE 624 (788)
Q Consensus 545 lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~ 624 (788)
+|+|-.+..+|++.++ ..++||||.|++|+|||||||.||.+-
T Consensus 566 AiLGEm~~~sG~v~v~------------------------------------gsiaYv~Q~pWI~ngTvreNILFG~~~- 608 (1381)
T KOG0054|consen 566 AILGEMPKLSGSVAVN------------------------------------GSVAYVPQQPWIQNGTVRENILFGSPY- 608 (1381)
T ss_pred HHhcCcccccceEEEc------------------------------------CeEEEeccccHhhCCcHHHhhhcCccc-
Confidence 9999999999999873 239999999999999999999998643
Q ss_pred ccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHH
Q 040758 625 EVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAF 702 (788)
Q Consensus 625 ~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaI 702 (788)
+.+...++++.+.++..++. +.|-.|. ||+|.+|||||||||++
T Consensus 609 ----------------------------------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 609 ----------------------------------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred ----------------------------------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 33556666777777654444 4676776 99999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 703 ARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 703 ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||+++|++|.+||+|.||+|+++.+.|++..-+ .+||+|++||.++.++.||+|++|++|+.
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999886533 58999999999999999999999999975
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-48 Score=384.59 Aligned_cols=208 Identities=26% Similarity=0.385 Sum_probs=170.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ +..+|+|||++|++||+++|+||||||||||+|+|.|+.+|++|+|.++|.+...-
T Consensus 2 mi~i~~l~K~fg--~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~---------- 69 (240)
T COG1126 2 MIEIKNLSKSFG--DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK---------- 69 (240)
T ss_pred eEEEEeeeEEeC--CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch----------
Confidence 589999999995 56799999999999999999999999999999999999999999999964322110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+|+++|+|||+..||+ .|+.||+.++-... ....+
T Consensus 70 ------------~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v---------------------------~~~~k 110 (240)
T COG1126 70 ------------KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV---------------------------KKLSK 110 (240)
T ss_pred ------------hhHHHHHHhcCeecccccccccchHHHHHHhhhHHH---------------------------cCCCH
Confidence 023356888999999999995 69999998853211 00011
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
....+...+.|+++|+.+. .+.++.+|||||||||||||||+.+|+++++|||||||||+...++.+.++
T Consensus 111 ~eA~~~A~~lL~~VGL~~k---------a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 111 AEAREKALELLEKVGLADK---------ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred HHHHHHHHHHHHHcCchhh---------hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 1112345677888877643 345688899999999999999999999999999999999999999887765
Q ss_pred --hcCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 736 --AAGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 736 --~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|.|.|++||.+.+++ .||||+.|++|..
T Consensus 182 LA~eGmTMivVTHEM~FAr~VadrviFmd~G~i 214 (240)
T COG1126 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKI 214 (240)
T ss_pred HHHcCCeEEEEechhHHHHHhhheEEEeeCCEE
Confidence 47999999999999875 6999999999853
No 51
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=396.67 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=178.4
Q ss_pred cEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+|++++|++.|+.. ...+|+|+||+|++||++||+|+||||||||+|++.++..|++|+|.+||.|...++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~------ 74 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALS------ 74 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCC------
Confidence 48999999999752 235899999999999999999999999999999999999999999999765544432
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
...++..|++||++||++.|++ .|+.+|++||-.-...
T Consensus 75 --------------~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~--------------------------- 113 (339)
T COG1135 75 --------------EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV--------------------------- 113 (339)
T ss_pred --------------hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC---------------------------
Confidence 2345567889999999999997 7999999997422110
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.+..-.+++.+.|+.+|+.+.. +.++.+|||||||||+|||||+.+|+||+.|||||||||++.+.|.+.
T Consensus 114 -~k~ei~~RV~elLelVgL~dk~---------~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L 183 (339)
T COG1135 114 -PKAEIKQRVAELLELVGLSDKA---------DRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL 183 (339)
T ss_pred -CHHHHHHHHHHHHHHcCChhhh---------ccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH
Confidence 0111235677889988877543 346788999999999999999999999999999999999999999998
Q ss_pred HHh----cCCEEEEEecCcchhh-cCCEEEEEccCCCCC
Q 040758 734 IEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQNS 767 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~~~ 767 (788)
|++ .|.|+++|||-+++++ .|||+.||++|+...
T Consensus 184 L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 184 LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 864 5999999999999875 799999999997633
No 52
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.3e-45 Score=376.02 Aligned_cols=210 Identities=26% Similarity=0.359 Sum_probs=168.6
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++||++.|..++ ..+|+++||+|++||.++|+||||||||||+++|.|+..|++|.|.++|.|...++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~-------- 73 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLS-------- 73 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCC--------
Confidence 67899999996433 36899999999999999999999999999999999999999999999765544432
Q ss_pred hhhcccccccchhcccc-cCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMN-RNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...+. ..+++||||||+..|++. |+.|||.+|..-...
T Consensus 74 ------------~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---------------------------- 113 (226)
T COG1136 74 ------------EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---------------------------- 113 (226)
T ss_pred ------------HHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC----------------------------
Confidence 11111 235679999999999975 999999864211000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..........+.++.+++++... ..++.+|||||||||||||||+++|++++.||||++||.++.+.|++.+
T Consensus 114 ~~~~~~~~~~~l~~~lgl~~~~~--------~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 114 SAGRRKRAAEELLEVLGLEDRLL--------KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred ChhHHHHHHHHHHHhcCChhhhc--------cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 00011244566677777653322 2446789999999999999999999999999999999999999999988
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.+ .|+|+|+|||+..+..+|||++.|.+|+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 64 4899999999999999999999999986
No 53
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-45 Score=373.01 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=166.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++++|++.|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|. .++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~---~v~--------- 68 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR---PVT--------- 68 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc---ccC---------
Confidence 5899999999963 67999999999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+|||||++.||+- |++||+.++..... ...
T Consensus 69 ----------------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~----------------------------~~~ 104 (248)
T COG1116 69 ----------------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG----------------------------KSK 104 (248)
T ss_pred ----------------CCCCCEEEEeccCcccchhhHHhhheehhhccc----------------------------cch
Confidence 223459999999999985 99999999743211 001
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
....+.+.+.|+.+|+..+. +.++.+||||||||+||||||+.+|++|+||||++|||+.|...+++.|.
T Consensus 105 ~e~~~~a~~~L~~VgL~~~~---------~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~ 175 (248)
T COG1116 105 AEARERAKELLELVGLAGFE---------DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175 (248)
T ss_pred HhHHHHHHHHHHHcCCcchh---------hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHH
Confidence 11234677889988876443 45678899999999999999999999999999999999999999998774
Q ss_pred ---hcCCEEEEEecCcc-hhhcCCEEEEEccC
Q 040758 736 ---AAGITYISVGHRRT-LYDFHKRVLRISTV 763 (788)
Q Consensus 736 ---~~g~TvI~IaHr~~-~~~~~D~Ilvl~~g 763 (788)
+.++|+++|||+.+ .+..+|||++|.++
T Consensus 176 lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 176 LWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 36899999999974 56789999999985
No 54
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-45 Score=372.79 Aligned_cols=207 Identities=25% Similarity=0.331 Sum_probs=171.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+|+|||+.|. ++.+++|+||+|++||.++++|||||||||++|+|.|+++|++|+|++||++..+++
T Consensus 1 MI~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d--------- 69 (309)
T COG1125 1 MIEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD--------- 69 (309)
T ss_pred CceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC---------
Confidence 489999999996 578999999999999999999999999999999999999999999999766554431
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCC-CCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYP-TWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~-~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...+|++||||-|...|| +.||.|||++- ... +. .
T Consensus 70 --------------~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~--------------------------~w---~ 106 (309)
T COG1125 70 --------------PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL--------------------------GW---D 106 (309)
T ss_pred --------------HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc--------------------------CC---C
Confidence 235688999999999999 56999999862 110 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
++..++++.+.|+.++++.. +....++.+|||||+|||.+||||+.+|++|++|||++||||.+...+|+.+.
T Consensus 107 k~~i~~r~~ELl~lvgL~p~-------~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~ 179 (309)
T COG1125 107 KERIKKRADELLDLVGLDPS-------EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179 (309)
T ss_pred HHHHHHHHHHHHHHhCCCHH-------HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHH
Confidence 01123457778888877531 11234578899999999999999999999999999999999999999999875
Q ss_pred h----cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+||||++ .++.+|||.+|++|+.
T Consensus 180 ~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i 214 (309)
T COG1125 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214 (309)
T ss_pred HHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeE
Confidence 3 5999999999984 5789999999999974
No 55
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=8e-45 Score=377.13 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=174.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||.+..++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~---------- 69 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASL---------- 69 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhc----------
Confidence 489999999996 57899999999999999999999999999999999999999999999965544333
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+.+.+.+|||||++... .-|++|-+.+|.... .. ......
T Consensus 70 -------------~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~-----------------~~-------~~~~~~ 112 (258)
T COG1120 70 -------------SPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH-----------------LG-------LFGRPS 112 (258)
T ss_pred -------------CHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc-----------------cc-------cccCCC
Confidence 2334567799999997554 559999999876431 00 000112
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+.+.+.++|+.+++.++.++. ..+||||||||+.|||||+++|++|+||||||+||...+.++++.+++
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~---------~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRP---------VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCc---------ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 23344678899999888766553 567999999999999999999999999999999999999999998864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+|+|+|++.|+++. .+|||++++|++|+.
T Consensus 184 l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i 217 (258)
T COG1120 184 LNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217 (258)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 58999999999976 589999999999975
No 56
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=8e-45 Score=352.49 Aligned_cols=210 Identities=26% Similarity=0.332 Sum_probs=175.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+|+||++.|+++ +++|+|+||+|++||.+-|+||||||||||+|+|++...|++|+|+++|.|...+.
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~--------- 70 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLK--------- 70 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccc---------
Confidence 48999999999974 78999999999999999999999999999999999999999999999766655442
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+|++||+|+||.-|.. .|+.||++|+-.-... ..
T Consensus 71 -----------~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~----------------------------~~ 111 (223)
T COG2884 71 -----------GREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK----------------------------PP 111 (223)
T ss_pred -----------ccccchhhheeeeEeeeccccccchHhhhhhhhhhccCC----------------------------CH
Confidence 1123357899999999998885 5999999996322110 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..-.+++.++|+.+|+.+.... .+.+||||||||++||||++.+|++||.||||.+|||+...+|++.+.+
T Consensus 112 ~~i~~rV~~~L~~VgL~~k~~~---------lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 112 REIRRRVSEVLDLVGLKHKARA---------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred HHHHHHHHHHHHHhccchhhhc---------CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1123568889999988754333 3678999999999999999999999999999999999999999888764
Q ss_pred ---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|.||++.||+.++++ +-.|++.|++|+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence 7999999999999875 4578999999975
No 57
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=363.38 Aligned_cols=218 Identities=26% Similarity=0.401 Sum_probs=179.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+..||+ ++.+|+||||+|++||++||+||||||||||+|+|.|+.+|++|+|.++|.+.....
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~--------- 72 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLK--------- 72 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccc---------
Confidence 6999999999984 778999999999999999999999999999999999999999999999654433221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...++.+|++|||++|.+.|.+. |+.+|+..|.... .+... .+.....
T Consensus 73 -----------~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~--------------~s~~~------slfglfs 121 (258)
T COG3638 73 -----------GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY--------------TSTWR------SLFGLFS 121 (258)
T ss_pred -----------hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhccc--------------chHHH------HHhCCCC
Confidence 22345678899999999999976 9999999875432 11111 1111222
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
+.+.....++|+.+|+.+ ....+..+|||||+|||+|||||+++|++++.|||+|+|||.+.+.|++.|++
T Consensus 122 k~dk~~Al~aLervgi~~---------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~ 192 (258)
T COG3638 122 KEDKAQALDALERVGILD---------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192 (258)
T ss_pred HHHHHHHHHHHHHcCcHH---------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHH
Confidence 334456788888887753 23345678999999999999999999999999999999999999999999864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.|+|+.-|..+++ +|||||+-|++|+.
T Consensus 193 in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i 226 (258)
T COG3638 193 INQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226 (258)
T ss_pred HHHHcCCEEEEEechHHHHHHHHhhheEecCCcE
Confidence 699999999999886 69999999999974
No 58
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-43 Score=365.42 Aligned_cols=206 Identities=26% Similarity=0.450 Sum_probs=169.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++|.|.+ + ++|+||||+|++|++++|+||||||||||+|+|+|+.+|.+|+|.++|.+....
T Consensus 4 ~i~v~nl~v~y~~-~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~---------- 71 (254)
T COG1121 4 MIEVENLTVSYGN-R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR---------- 71 (254)
T ss_pred EEEEeeeEEEECC-E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc----------
Confidence 5999999999964 3 699999999999999999999999999999999999999999999954322111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
..+..||||||.. +-|+-||+|-+..|..... +...+
T Consensus 72 ----------------~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~------------------------g~~~~ 111 (254)
T COG1121 72 ----------------RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK------------------------GWFRR 111 (254)
T ss_pred ----------------ccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc------------------------ccccc
Confidence 1135699999965 3467799999988754310 11111
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..+.+.+++.++|+.+++.++.++. ..+|||||+||+.|||||+.+|++|+|||||+|+|+.++..+++.|
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~---------i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL 182 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQ---------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCc---------ccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 2233457899999999988765543 5679999999999999999999999999999999999999999887
Q ss_pred Hh---cCCEEEEEecCcch-hhcCCEEEEEccCC
Q 040758 735 EA---AGITYISVGHRRTL-YDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~ 764 (788)
++ +|+||++|+||++. .+++|+|+.|++.-
T Consensus 183 ~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 183 KELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred HHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 54 69999999999875 57899999998753
No 59
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-44 Score=388.76 Aligned_cols=204 Identities=28% Similarity=0.383 Sum_probs=172.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|++..++.
T Consensus 5 ~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp--------- 73 (352)
T COG3842 5 ALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP--------- 73 (352)
T ss_pred eEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------
Confidence 599999999996 578999999999999999999999999999999999999999999999655543331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+|+||+|||+..|| +.||+|||+||-... .+..
T Consensus 74 ----------------p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~----------------------------~~~~ 109 (352)
T COG3842 74 ----------------PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR----------------------------KKLK 109 (352)
T ss_pred ----------------hhhcccceeecCcccCCCCcHHHHhhhhhhhc----------------------------CCCC
Confidence 2357799999999999 579999999984310 0000
Q ss_pred C-CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 K-PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~-~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
. ...+.+.++|+.++++.+.. .++.+|||||||||||||||+.+|++|+||||.||||.+-...++..++
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~---------R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFAD---------RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhh---------hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHH
Confidence 0 11246788898888875433 3578899999999999999999999999999999999999999988776
Q ss_pred h----cCCEEEEEecCc-chhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|.|.|+|||+. +.+..+|||.||++|+.
T Consensus 181 ~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 181 ELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred HHHHhcCCeEEEEECCHHHHhhhccceEEccCCce
Confidence 4 699999999995 56789999999999975
No 60
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.8e-43 Score=375.68 Aligned_cols=209 Identities=26% Similarity=0.348 Sum_probs=177.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++++.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.+...+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~---------- 70 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV---------- 70 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC----------
Confidence 589999999997545679999999999999999999999999999999999998 789999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+|+.|+||||++.+|++|+++|+.+...
T Consensus 71 -------------~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~----------------------------------- 102 (275)
T cd03289 71 -------------PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK----------------------------------- 102 (275)
T ss_pred -------------CHHHHhhhEEEECCCcccchhhHHHHhhhccC-----------------------------------
Confidence 12234677999999999999999999953110
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
..++++.++++.+++...... ++++++. ++.|.+||||||||++|||||+++|+||||||||++||+.+...+++.|+
T Consensus 103 ~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~ 182 (275)
T cd03289 103 WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182 (275)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 123456677777777654444 5788986 78899999999999999999999999999999999999999999999997
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|+||||++.+..||||++|++|+.
T Consensus 183 ~~~~~~tii~isH~~~~i~~~dri~vl~~G~i 214 (275)
T cd03289 183 QAFADCTVILSEHRIEAMLECQRFLVIEENKV 214 (275)
T ss_pred HhcCCCEEEEEECCHHHHHhCCEEEEecCCeE
Confidence 5 58999999999988888999999999875
No 61
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-43 Score=380.49 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=171.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||++.|++ . .+|+|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|++..++.
T Consensus 3 ~i~l~~v~K~yg~-~-~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~--------- 71 (338)
T COG3839 3 ELELKNVRKSFGS-F-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP--------- 71 (338)
T ss_pred EEEEeeeEEEcCC-c-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------
Confidence 5999999999963 2 2999999999999999999999999999999999999999999999765544431
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+|+||+|||+..||+ .||+|||+||-..... .+
T Consensus 72 ----------------P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~----------------------------~k 107 (338)
T COG3839 72 ----------------PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV----------------------------PK 107 (338)
T ss_pred ----------------hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC----------------------------ch
Confidence 23577999999999995 5999999997432110 01
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++++.++++.+++++++++ .+.+|||||||||||||||+++|++++||||+|+||+.....+...+++
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r---------~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNR---------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhc---------CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence 1234578888888888876655 3678999999999999999999999999999999999999888777654
Q ss_pred ----cCCEEEEEecCc-chhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
.|.|+|.+|||. +....+|||.+|++|..
T Consensus 179 lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i 212 (338)
T COG3839 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212 (338)
T ss_pred HHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCee
Confidence 589999999995 66788999999999975
No 62
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-44 Score=352.41 Aligned_cols=212 Identities=25% Similarity=0.280 Sum_probs=172.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-----ceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR-----GKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~-----G~I~~~~~~~~~i~~~~~ 572 (788)
.++++|+++.|+ ++.+|+|||++|++++++|++||||||||||+|++-|+.+..+ |+|.++|.|..+..
T Consensus 7 ~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~---- 80 (253)
T COG1117 7 AIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK---- 80 (253)
T ss_pred eeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC----
Confidence 589999999996 5679999999999999999999999999999999999999876 99999655433221
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+...+|+.||+|||.|.-|+.||+||++||.... |..
T Consensus 81 -----------------~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~------------g~~------------- 118 (253)
T COG1117 81 -----------------VDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH------------GIK------------- 118 (253)
T ss_pred -----------------CCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhh------------ccc-------------
Confidence 12235688899999999999999999999974221 110
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
. +.-++-++++|+.+.+.+... |..++.+..||||||||++|||||.-+|++|+||||||||||.+..+|.+
T Consensus 119 --~-~~ldeiVe~sLk~AaLWdEVK-----DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe 190 (253)
T COG1117 119 --D-KELDEIVESSLKKAALWDEVK-----DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190 (253)
T ss_pred --h-HHHHHHHHHHHHHhHhHHHhH-----HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH
Confidence 0 112345667788887754322 22345567799999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.+.+ +.-|+|+|||.+. ..+.+|+...+..|+.
T Consensus 191 Li~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~L 226 (253)
T COG1117 191 LITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226 (253)
T ss_pred HHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEE
Confidence 8875 6899999999985 5678999999988764
No 63
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.5e-43 Score=352.72 Aligned_cols=212 Identities=25% Similarity=0.341 Sum_probs=169.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|++++|+++|+ ++.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|.|...+.
T Consensus 7 ~~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls-------- 76 (263)
T COG1127 7 PLIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS-------- 76 (263)
T ss_pred ceEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC--------
Confidence 3699999999995 678999999999999999999999999999999999999999999999766543331
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...+...|+++|++||...||+. ||.||+.|+-.+.+. + |
T Consensus 77 ------------~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~-----------l-p--------------- 117 (263)
T COG1127 77 ------------EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK-----------L-P--------------- 117 (263)
T ss_pred ------------HHHHHHHHhheeEEeeccccccccchhHhhheehHhhcc-----------C-C---------------
Confidence 11223567889999999999975 999999997432110 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...-++-+...|+.+|+.... ....+++||||++.|+|||||++-||+||++|||||+|||.+...+-+.++
T Consensus 118 ~~~i~~lv~~KL~~VGL~~~~--------~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~ 189 (263)
T COG1127 118 ESLIRELVLMKLELVGLRGAA--------ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189 (263)
T ss_pred HHHHHHHHHHHHHhcCCChhh--------hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHH
Confidence 000112344556777664321 124578899999999999999999999999999999999999988877765
Q ss_pred h----cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+ .|.|+|+|||+++ +...|||+++|.+|+.
T Consensus 190 ~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 190 ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred HHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 3 5999999999975 5678999999999975
No 64
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=351.41 Aligned_cols=206 Identities=29% Similarity=0.400 Sum_probs=161.6
Q ss_pred cEEEeeeEEEcCCCCc---cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKA---TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~---~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+++++|+++.|+. ++ ++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|. ....+
T Consensus 3 ~l~v~nl~~~y~~-~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~---~~~~~---- 74 (252)
T COG1124 3 LLSVRNLSIVYGG-GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK---PLAPK---- 74 (252)
T ss_pred eEEEeceEEEecC-CcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc---ccCcc----
Confidence 5899999999974 33 4999999999999999999999999999999999999999999999543 33100
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccC---CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV---LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf---~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
...+..++.|-+|||||+-- ..||++-|.=+-. .
T Consensus 75 ---------------~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~------------~---------------- 111 (252)
T COG1124 75 ---------------KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR------------P---------------- 111 (252)
T ss_pred ---------------ccchhhccceeEEecCCccccCcchhHHHHHhhhhc------------c----------------
Confidence 01113467799999999732 1355544422110 0
Q ss_pred ccCCCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.+-.....++.++|+.+|+.. ++ ..++.+|||||+|||||||||.-+|++||||||||+||...++.|
T Consensus 112 --~~~~~~~~~i~~~L~~VgL~~~~l---------~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 112 --HGLSKSQQRIAELLDQVGLPPSFL---------DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred --CCccHHHHHHHHHHHHcCCCHHHH---------hcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 001112345888999998853 22 345778999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.+.|.+ .+-|+|+|||++..+. .||||+||++|..
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~i 220 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeE
Confidence 998753 5889999999998874 6999999999964
No 65
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.1e-42 Score=381.07 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=169.1
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+.+ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+....+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~------- 73 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS------- 73 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-------
Confidence 48999999999632 246999999999999999999999999999999999999999999999654432221
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
....+..|++|||+||++.+|. .|++||+.|+.... +.
T Consensus 74 -------------~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~------------~~---------------- 112 (343)
T TIGR02314 74 -------------NSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD------------NT---------------- 112 (343)
T ss_pred -------------HHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc------------CC----------------
Confidence 0111234677999999999995 69999998752100 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++.+..+ ..+.+|||||||||+|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~---------~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHD---------SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00011245677888887764432 346789999999999999999999999999999999999999999888
Q ss_pred Hh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ .|.|+|+|||+++.+ ++||+|++|++|+.
T Consensus 184 ~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~i 219 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 389999999999876 67999999999975
No 66
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1e-42 Score=359.20 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=165.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--------- 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLR--------- 71 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcC---------
Confidence 37899999999643346999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|+||++.+|. .|++||+.++.... +. ..
T Consensus 72 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~ 112 (216)
T TIGR00960 72 -----------GREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII------------GV----------------PP 112 (216)
T ss_pred -----------hhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc------------CC----------------CH
Confidence 0001123567999999999886 59999998742100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 113 RDANERVSAALEKVGLEGKAH---------ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred HHHHHHHHHHHHHcCChhhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 011245667788777654322 23567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|+|||+++.+ +.||++++|++|+
T Consensus 184 ~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 184 FNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 489999999998766 5799999999885
No 67
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-42 Score=355.83 Aligned_cols=208 Identities=28% Similarity=0.410 Sum_probs=173.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+++++|++|.|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.+...
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~----------- 70 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS----------- 70 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc-----------
Confidence 58999999999864 689999999999999999999999999999999999999999999985433210
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..+...+|+.+|||+|+| .+|..||.|.++||....-..+
T Consensus 71 -----------~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~--------------------------- 112 (235)
T COG1122 71 -----------EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPR--------------------------- 112 (235)
T ss_pred -----------hhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCH---------------------------
Confidence 012335678899999999 8899999999999854321100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
..-++.+.++|+.+++.+..+ .++.+||||||||+|||.+|+.+|++||||||||+||+...+.+.+.++
T Consensus 113 -~e~~~rv~~~l~~vgl~~~~~---------r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 113 -EEIEERVAEALELVGLEELLD---------RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred -HHHHHHHHHHHHHcCchhhcc---------CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 011345778888888875543 3467899999999999999999999999999999999999999998886
Q ss_pred h---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ . |+|+|++|||++.+ .+||++++|++|+.
T Consensus 183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i 217 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217 (235)
T ss_pred HHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE
Confidence 5 3 78999999998765 67999999999976
No 68
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.4e-41 Score=351.86 Aligned_cols=210 Identities=27% Similarity=0.367 Sum_probs=172.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|++.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 71 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI---------- 71 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC----------
Confidence 5899999999975445799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+++.++|++|++.+|+.|++||+.+...
T Consensus 72 -------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~----------------------------------- 103 (221)
T cd03244 72 -------------GLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE----------------------------------- 103 (221)
T ss_pred -------------CHHHHhhhEEEECCCCccccchHHHHhCcCCC-----------------------------------
Confidence 11234567999999999999999999975321
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++.....+ +.|+++. ++++..||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (221)
T cd03244 104 YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183 (221)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 012344555566665544333 3577775 67888999999999999999999999999999999999999999999997
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~ 215 (221)
T cd03244 184 EAFKDCTVLTIAHRLDTIIDSDRILVLDKGRV 215 (221)
T ss_pred HhcCCCEEEEEeCCHHHHhhCCEEEEEECCeE
Confidence 5 57899999999987777999999999864
No 69
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.3e-41 Score=355.91 Aligned_cols=210 Identities=24% Similarity=0.318 Sum_probs=165.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA----------- 69 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-----------
Confidence 478999999974346799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|+||++.+|+.|+.||+.++......
T Consensus 70 ------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~-------------------------------- 105 (237)
T cd03252 70 ------------DPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSM-------------------------------- 105 (237)
T ss_pred ------------CHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCH--------------------------------
Confidence 111235679999999999999999999875321111
Q ss_pred ChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 659 STDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
+++.+.++..++...... +.|+++. ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 106 --~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 106 --ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred --HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111222222222222211 1244443 556788999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i 214 (237)
T cd03252 184 ICAGRTVIIIAHRLSTVKNADRIIVMEKGRI 214 (237)
T ss_pred hcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 58999999999988778999999999864
No 70
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=5.5e-42 Score=354.16 Aligned_cols=209 Identities=27% Similarity=0.398 Sum_probs=163.9
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|++++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~-------- 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS-------- 72 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc--------
Confidence 46899999996421 57999999999999999999999999999999999999999999999654321110
Q ss_pred hhhcccccccchhcc-cccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRS-MNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~-~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
... ....++.++|++|++.+|.. |++||+.++.......
T Consensus 73 ------------~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~--------------------------- 113 (218)
T cd03255 73 ------------EKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP--------------------------- 113 (218)
T ss_pred ------------hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC---------------------------
Confidence 000 00124579999999999976 9999998742110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.++++.++++... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (218)
T cd03255 114 -KKERRERAEELLERVGLGDRL---------NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183 (218)
T ss_pred -HHHHHHHHHHHHHHcCCchhh---------hcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 000123466777777665332 2345679999999999999999999999999999999999999999888
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++ .|+|+|+|||+++.+..||++++|++|+
T Consensus 184 ~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 184 RELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 64 3899999999998777999999999885
No 71
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=372.00 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=170.2
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.+....
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~--- 154 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK--- 154 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc---
Confidence 46899999999997545679999999999999999999999999999999999997 5799999965432110
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
......+|+.++||||+|++|++|++|||.|+........
T Consensus 155 ------------------~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~---------------------- 194 (329)
T PRK14257 155 ------------------KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND---------------------- 194 (329)
T ss_pred ------------------ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh----------------------
Confidence 0111245677999999999999999999987521100000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
.....+.+.++++.+++.. ++++ .++++.+|||||||||+|||||+++|+|||||||||+||+.+...
T Consensus 195 -----~~~~~~~~~~~l~~~~L~~------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~ 263 (329)
T PRK14257 195 -----RKILEKIVEKSLKSAALWD------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAK 263 (329)
T ss_pred -----HHHHHHHHHHHHHHcCCcc------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 0000112455566665532 2233 367899999999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.+.|++ .++|+|+|||+++.+. .||||++|++|+.
T Consensus 264 i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i 302 (329)
T PRK14257 264 IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWI 302 (329)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9998875 5799999999998764 5999999999865
No 72
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-42 Score=354.13 Aligned_cols=209 Identities=25% Similarity=0.346 Sum_probs=169.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|+++.|+ ..++++||||+|+.||.+|+.||||||||||+++|+|+..|++|+|.++|.-.-|.+
T Consensus 2 ~i~i~~~~~~~~--~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~--------- 70 (345)
T COG1118 2 SIRINNVKKRFG--AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS--------- 70 (345)
T ss_pred ceeehhhhhhcc--cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh---------
Confidence 478899999996 467899999999999999999999999999999999999999999999654111221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......++||||+|+..|| +.||+|||+||-.-... ....
T Consensus 71 -------------~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~--------------------------~p~~ 111 (345)
T COG1118 71 -------------NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKE--------------------------RPSE 111 (345)
T ss_pred -------------ccchhhcceeEEEechhhcccchHHhhhhhccccccc--------------------------CCCh
Confidence 1112346799999999999 57999999998532100 0001
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+..+.+.|+.++++.+.+ .++.+||||||||||+||||..+|++|+||||++|||+...+++.+.|++
T Consensus 112 ~~~r~rv~elL~lvqL~~la~---------ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 112 AEIRARVEELLRLVQLEGLAD---------RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred hhHHHHHHHHHHHhcccchhh---------cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence 123356777788877765433 35788999999999999999999999999999999999999999888764
Q ss_pred ----cCCEEEEEecCc-chhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
.|.|+++||||. +..+.||||++|++|+.
T Consensus 183 ~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~I 216 (345)
T COG1118 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216 (345)
T ss_pred HHHhhCceEEEEeCCHHHHHhhcceEEEecCCee
Confidence 599999999996 56789999999999963
No 73
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-41 Score=354.87 Aligned_cols=209 Identities=25% Similarity=0.341 Sum_probs=163.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---------- 68 (235)
T cd03261 1 IELRGLTKSFG--GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLS---------- 68 (235)
T ss_pred CeEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccC----------
Confidence 46899999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.|+||||++.+|.. |++||+.++..... +. ...
T Consensus 69 ----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-----------~~----------------~~~ 111 (235)
T cd03261 69 ----------EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT-----------RL----------------SEE 111 (235)
T ss_pred ----------hhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc-----------CC----------------CHH
Confidence 00011345679999999999985 99999987421000 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 112 EIREIVLEKLEAVGLRGAE---------DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred HHHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677777665332 233567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 183 ~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i 215 (235)
T cd03261 183 KKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215 (235)
T ss_pred HHhcCcEEEEEecCHHHHHHhcCEEEEEECCeE
Confidence 389999999998765 67999999999875
No 74
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=3.6e-41 Score=348.49 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=170.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 71 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL---------- 71 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC----------
Confidence 4899999999964335799999999999999999999999999999999999999999999964322111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|..|+.||+.++....
T Consensus 72 -------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~--------------------------------- 105 (220)
T cd03245 72 -------------DPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--------------------------------- 105 (220)
T ss_pred -------------CHHHHHhhEEEeCCCCccccchHHHHhhcCCCCC---------------------------------
Confidence 1112345799999999999899999998753210
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...++.+.++.+++....+. +.|+++. .+...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 106 -~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 106 -DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184 (220)
T ss_pred -CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 11234455566666544333 3566665 55678899999999999999999999999999999999999999999987
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++....||++++|++|+.
T Consensus 185 ~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i 216 (220)
T cd03245 185 QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216 (220)
T ss_pred HhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeE
Confidence 5 35899999999987789999999999864
No 75
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-41 Score=346.00 Aligned_cols=197 Identities=26% Similarity=0.368 Sum_probs=161.0
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~~~~l~~~~~~-~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~----------- 65 (205)
T cd03226 1 RIENISFSYKK-GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK---PIK----------- 65 (205)
T ss_pred CcccEEEEeCC-cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE---Ehh-----------
Confidence 36899999963 257999999999999999999999999999999999999999999999543 221
Q ss_pred cccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. ...++.++|++|++ .++..|++||+.++.... .
T Consensus 66 -----------~-~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~--------------------------------~ 101 (205)
T cd03226 66 -----------A-KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL--------------------------------D 101 (205)
T ss_pred -----------h-HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc--------------------------------C
Confidence 0 12345799999997 467889999998742110 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 102 AGNEQAETVLKDLDLYALKE---------RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred ccHHHHHHHHHHcCCchhcC---------CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 11245667788877754332 23567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||++++|++|+
T Consensus 173 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 173 AAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 589999999998765 5799999999885
No 76
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-41 Score=348.98 Aligned_cols=203 Identities=30% Similarity=0.375 Sum_probs=161.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 67 (213)
T cd03259 1 LELKGLSKTYG--SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV----------- 67 (213)
T ss_pred CeeeeeEEEeC--CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-----------
Confidence 46899999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...++.++|+||++.+|. .|++||+.++....... ..
T Consensus 68 --------------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 105 (213)
T cd03259 68 --------------PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP----------------------------KA 105 (213)
T ss_pred --------------chhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCC----------------------------HH
Confidence 112456999999999886 59999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 106 EIRARVRELLELVGLEGLL---------NRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176 (213)
T ss_pred HHHHHHHHHHHHcCChhhh---------hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677777665332 233567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||++++|++|+.
T Consensus 177 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 177 QRELGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred HHHcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 38999999999875 578999999999864
No 77
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-41 Score=366.39 Aligned_cols=224 Identities=19% Similarity=0.258 Sum_probs=167.4
Q ss_pred CcEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc-ccCCC
Q 040758 497 KLLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET-DAHTS 572 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i-~~~~~ 572 (788)
..|+++||+|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+..+. ..+..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 469999999999742 24699999999999999999999999999999999999999999999965432110 00000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
+ .............+++.||||+|+| .+|+.|++|||.++........
T Consensus 100 ------~--~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~---------------------- 149 (320)
T PRK13631 100 ------I--TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK---------------------- 149 (320)
T ss_pred ------c--ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCH----------------------
Confidence 0 0000000001123467799999998 6899999999988631100000
Q ss_pred hccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
......+.+.++.++++ .. .+..+.+||||||||++|||||+++|++|||||||++||+.++..
T Consensus 150 ------~~~~~~~~~~l~~~gL~~~~---------~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~ 214 (320)
T PRK13631 150 ------SEAKKLAKFYLNKMGLDDSY---------LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214 (320)
T ss_pred ------HHHHHHHHHHHHHcCCChhH---------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHH
Confidence 00112345566666653 11 244567899999999999999999999999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|.+ .|+|+|+|||+++.+ ++||+|++|++|+.
T Consensus 215 l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9998864 589999999999855 78999999999975
No 78
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=372.96 Aligned_cols=205 Identities=23% Similarity=0.311 Sum_probs=166.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---------- 71 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL---------- 71 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 4899999999952 46799999999999999999999999999999999999999999999965432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..++.||||||++.+|. .|++|||.|+...... ..
T Consensus 72 -------------~--~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------------------------~~ 108 (356)
T PRK11650 72 -------------E--PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM----------------------------PK 108 (356)
T ss_pred -------------C--HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC----------------------------CH
Confidence 1 12357999999999995 6999999986321000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.++++.+.+ ..+.+|||||||||+|||||+++|++||||||||+||+.+...+.+.|++
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~---------~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLD---------RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 001245677888887765443 34567999999999999999999999999999999999999999888764
Q ss_pred ----cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|.|+|+|||+++ ....||+|++|++|+.
T Consensus 180 l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 180 LHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 3899999999975 5578999999999964
No 79
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=2.1e-41 Score=348.73 Aligned_cols=209 Identities=25% Similarity=0.371 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~--------- 70 (214)
T TIGR02673 1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR--------- 70 (214)
T ss_pred CEEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC---------
Confidence 3789999999952 457999999999999999999999999999999999999999999999654322110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|++|++.+|. .|++||+.++.... +. ..
T Consensus 71 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------~~----------------~~ 111 (214)
T TIGR02673 71 -----------GRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR------------GK----------------KE 111 (214)
T ss_pred -----------HHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc------------CC----------------CH
Confidence 0011123567999999999986 59999997641100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 112 REIQRRVGAALRQVGLEHKAD---------AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred HHHHHHHHHHHHHcCChhhhh---------CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011235667777777653322 23467999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||++++|++|+
T Consensus 183 ~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 183 LNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 589999999998765 5799999999874
No 80
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.8e-41 Score=348.54 Aligned_cols=205 Identities=29% Similarity=0.414 Sum_probs=159.9
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++|++++|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 68 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL------------ 68 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC------------
Confidence 36899999964225799999999999999999999999999999999999999999999964322111
Q ss_pred cccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|+||++. +++.|++||+.++....... ..
T Consensus 69 -----------~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~----------------------------~~ 109 (211)
T cd03225 69 -----------SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP----------------------------EE 109 (211)
T ss_pred -----------CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC----------------------------HH
Confidence 11123467999999983 56789999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++.... ......||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.+
T Consensus 110 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 180 (211)
T cd03225 110 EIEERVEEALELVGLEGLR---------DRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180 (211)
T ss_pred HHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123455667776664332 234577999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||+|++|++|+
T Consensus 181 ~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 181 KAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 489999999998766 5699999999874
No 81
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7.6e-41 Score=347.64 Aligned_cols=215 Identities=24% Similarity=0.367 Sum_probs=165.8
Q ss_pred CCCCcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 494 KSQKLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 494 ~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
...++|+++|++++|++++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---- 79 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK---PIS---- 79 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC---chH----
Confidence 3457899999999997432 46999999999999999999999999999999999999999999999543 321
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
..+....++.++|++|++.+|..|++||+.++.......++.+.++.
T Consensus 80 ----------------~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~----------------- 126 (226)
T cd03248 80 ----------------QYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQK----------------- 126 (226)
T ss_pred ----------------HcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHH-----------------
Confidence 00111234679999999999999999999875322111110000000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
..+.+.++.+. .|+++. ...+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 127 --------~~~~~~l~~l~--------~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 190 (226)
T cd03248 127 --------AHAHSFISELA--------SGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190 (226)
T ss_pred --------cCcHHHHHhcc--------ccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 01122333321 133433 4567889999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 732 EQIEA--AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
+.|++ .++|+|++||+++.+..||+|++|++|+
T Consensus 191 ~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 191 QALYDWPERRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 98875 4689999999998877899999999875
No 82
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-41 Score=349.31 Aligned_cols=210 Identities=25% Similarity=0.395 Sum_probs=168.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 70 (229)
T cd03254 2 EIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI---------- 70 (229)
T ss_pred eEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHc----------
Confidence 4899999999963 34699999999999999999999999999999999999999999999954321111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|.+|++||+.++....
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~--------------------------------- 104 (229)
T cd03254 71 -------------SRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNA--------------------------------- 104 (229)
T ss_pred -------------CHHHHhhhEEEecCCchhhhhHHHHHHhccCCCC---------------------------------
Confidence 1113456799999999999999999998753211
Q ss_pred CChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...++.++++.+++....+++ .|+++. ..+..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.
T Consensus 105 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (229)
T cd03254 105 -TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183 (229)
T ss_pred -CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 112333344444444333332 355554 56678899999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ +++|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~ 215 (229)
T cd03254 184 KLMKGRTSIIIAHRLSTIKNADKILVLDDGKI 215 (229)
T ss_pred HhcCCCEEEEEecCHHHHhhCCEEEEEeCCeE
Confidence 5 58999999999887778999999999875
No 83
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=4.5e-41 Score=348.48 Aligned_cols=216 Identities=23% Similarity=0.292 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+...+.
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--------- 70 (222)
T PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLK--------- 70 (222)
T ss_pred CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCC---------
Confidence 3789999999952 457999999999999999999999999999999999999999999999654322110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|++|++.++ ..|++||+.++....... .
T Consensus 71 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~ 111 (222)
T PRK10908 71 -----------NREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGAS----------------------------G 111 (222)
T ss_pred -----------hhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCC----------------------------H
Confidence 001112356799999999875 569999998742110000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 112 DDIRRRVSAALDKVGLLDKA---------KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 00112455667776664322 233567999999999999999999999999999999999999999888764
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSN 771 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~ 771 (788)
.++|+|+|||+++.+ ..||++++|++|+..++.++
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (222)
T PRK10908 183 FNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGG 221 (222)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccCCCC
Confidence 589999999998766 57999999999987666554
No 84
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=3.8e-41 Score=348.61 Aligned_cols=210 Identities=26% Similarity=0.355 Sum_probs=163.1
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|+++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-------- 73 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS-------- 73 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC--------
Confidence 78999999996422 46999999999999999999999999999999999999999999999654322110
Q ss_pred hhhcccccccchhcccccCc-ceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNS-RGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
......++ +.++|++|++.+|. .|++||+.++.......
T Consensus 74 ------------~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~--------------------------- 114 (221)
T TIGR02211 74 ------------SNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS--------------------------- 114 (221)
T ss_pred ------------HhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCC---------------------------
Confidence 00000112 56999999999986 59999997632100000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.+.++.++++... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 115 -~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 184 (221)
T TIGR02211 115 -VKEAKERAYEMLEKVGLEHRI---------NHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184 (221)
T ss_pred -HHHHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 000123455677776664332 2335679999999999999999999999999999999999999999988
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 185 ~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 185 LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 63 38999999999988778999999998853
No 85
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-41 Score=370.09 Aligned_cols=205 Identities=27% Similarity=0.367 Sum_probs=167.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 5 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 73 (351)
T PRK11432 5 NFVVLKNITKRFG--SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR--------- 73 (351)
T ss_pred cEEEEEeEEEEEC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------
Confidence 3699999999996 45799999999999999999999999999999999999999999999965432211
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+ ..+++||||||++.+|. .|++|||.|+...... .
T Consensus 74 --------------~--~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~----------------------------~ 109 (351)
T PRK11432 74 --------------S--IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV----------------------------P 109 (351)
T ss_pred --------------C--HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC----------------------------C
Confidence 1 12467999999999996 5999999986311000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++..+.+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|+
T Consensus 110 ~~~~~~~v~~~l~~~gl~~~~~---------r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 180 (351)
T PRK11432 110 KEERKQRVKEALELVDLAGFED---------RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180 (351)
T ss_pred HHHHHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0011245677888877764433 3367799999999999999999999999999999999999999998876
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+.+. ...||+|++|++|+.
T Consensus 181 ~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 4 48999999999865 578999999999964
No 86
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.1e-41 Score=347.43 Aligned_cols=208 Identities=23% Similarity=0.317 Sum_probs=162.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---------- 69 (214)
T cd03292 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR---------- 69 (214)
T ss_pred CEEEEEEEEeCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCC----------
Confidence 468999999964 357999999999999999999999999999999999999999999999644321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.++|++|++.+|. .|++||+.++....... ..
T Consensus 70 ----------~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~----------------------------~~ 111 (214)
T cd03292 70 ----------GRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP----------------------------PR 111 (214)
T ss_pred ----------HHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCC----------------------------HH
Confidence 0001123567999999999997 49999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.++++...+ ....+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 182 (214)
T cd03292 112 EIRKRVPAALELVGLSHKHR---------ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI 182 (214)
T ss_pred HHHHHHHHHHHHcCCHHHhh---------CChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 01234566777766653322 23467999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||++++|++|+
T Consensus 183 ~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 183 NKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 589999999998766 4799999999875
No 87
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4e-41 Score=324.17 Aligned_cols=201 Identities=27% Similarity=0.346 Sum_probs=164.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|.+++|.|+|.. .==.++++|++||++||+||||||||||+++++||..|.+|+|+++|.|....
T Consensus 2 l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~----------- 66 (231)
T COG3840 2 LALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS----------- 66 (231)
T ss_pred ccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC-----------
Confidence 667899999953 22568999999999999999999999999999999999999999965543221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...++-+++++||..||. -||.+||.+|.... ++ -..
T Consensus 67 --------------~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~-----------------Lk-----------L~a 104 (231)
T COG3840 67 --------------PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG-----------------LK-----------LNA 104 (231)
T ss_pred --------------CcccCChhhhhhccccchhhhhhhhhcccCCcc-----------------cc-----------cCH
Confidence 123455999999999994 69999999975431 10 011
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH--
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE-- 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~-- 735 (788)
.+.+.+..++.++|+..+.+++ +.+||||||||+|+||+|+++-|||+||||+|+|||.-..++...+.
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RL---------P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l 175 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRL---------PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL 175 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhC---------ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHH
Confidence 2346688889999987666654 56799999999999999999999999999999999999998877654
Q ss_pred --hcCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 --AAGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 --~~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+.+.|+++|||.++ ..+.+|+++++++|+.
T Consensus 176 ~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri 208 (231)
T COG3840 176 CDERKMTLLMVTHHPEDAARIADRVVFLDNGRI 208 (231)
T ss_pred HHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEE
Confidence 36999999999975 5678999999999975
No 88
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-41 Score=360.06 Aligned_cols=208 Identities=24% Similarity=0.335 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 498 LLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
.|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------- 74 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE--------- 74 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC---------
Confidence 58999999999742 24699999999999999999999999999999999999999999999965432111
Q ss_pred hhhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.++||+|+|. ++..|++|||.|+.......
T Consensus 75 --------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~--------------------------- 113 (279)
T PRK13650 75 --------------NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP--------------------------- 113 (279)
T ss_pred --------------cHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC---------------------------
Confidence 11123567999999983 55679999998853110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.+.++++.++++...+ ..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 183 (279)
T PRK13650 114 -HEEMKERVNEALELVGMQDFKE---------REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183 (279)
T ss_pred -HHHHHHHHHHHHHHCCCHhHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0001234667788877754332 335679999999999999999999999999999999999999999887
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|++||+++.+..||+|++|++|+.
T Consensus 184 ~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i 218 (279)
T PRK13650 184 KGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218 (279)
T ss_pred HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 53 38999999999887778999999999874
No 89
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-40 Score=348.37 Aligned_cols=210 Identities=25% Similarity=0.394 Sum_probs=164.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY----------- 69 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC-----------
Confidence 478999999974334799999999999999999999999999999999999999999999964321111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|++|++.+|+.|++||+.++......
T Consensus 70 ------------~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~-------------------------------- 105 (234)
T cd03251 70 ------------TLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR-------------------------------- 105 (234)
T ss_pred ------------CHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCH--------------------------------
Confidence 111235679999999999999999999885422110
Q ss_pred ChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 659 STDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.++.+.++..++....+.+ .|+++. +.++..||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 106 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 106 --EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred --HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 1111222222222222211 244443 556788999999999999999999999999999999999999999999875
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 214 (234)
T cd03251 184 LMKNRTTFVIAHRLSTIENADRIVVLEDGKI 214 (234)
T ss_pred hcCCCEEEEEecCHHHHhhCCEEEEecCCeE
Confidence 58999999999987777999999999875
No 90
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-40 Score=351.85 Aligned_cols=213 Identities=25% Similarity=0.287 Sum_probs=171.8
Q ss_pred CCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
..+.|+++|++++|++.++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~------- 88 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL------- 88 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhC-------
Confidence 4568999999999975335799999999999999999999999999999999999999999999965432111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.++|++|++.+|++|++||+......
T Consensus 89 ----------------~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~------------------------------- 121 (257)
T cd03288 89 ----------------PLHTLRSRLSIILQDPILFSGSIRFNLDPECKC------------------------------- 121 (257)
T ss_pred ----------------CHHHHhhhEEEECCCCcccccHHHHhcCcCCCC-------------------------------
Confidence 111345679999999999999999998643110
Q ss_pred CCCCChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
..+++.++++.+++....+.+ .|+++. ++++.+||||||||++|||||+++|++|||||||++||+.++..+.+
T Consensus 122 ----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~ 197 (257)
T cd03288 122 ----TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197 (257)
T ss_pred ----CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 012233334444443333332 467765 67788999999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+++ .+.|+|++||+++.+..||+|++|++|+.
T Consensus 198 ~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i 232 (257)
T cd03288 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGIL 232 (257)
T ss_pred HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEE
Confidence 8875 58999999999988777999999999875
No 91
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-41 Score=358.18 Aligned_cols=207 Identities=22% Similarity=0.363 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 72 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE---------- 72 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----------
Confidence 5899999999963 35699999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+....++.+|||||+| .++..|+.||+.|+.......
T Consensus 73 -------------~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---------------------------- 111 (274)
T PRK13647 73 -------------NEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD---------------------------- 111 (274)
T ss_pred -------------CHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC----------------------------
Confidence 1112345699999998 578889999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 112 ~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~ 182 (274)
T PRK13647 112 KDEVERRVEEALKAVRMWDFRD---------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD 182 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 0001234567777777754332 2356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ ++||+|++|++|+.
T Consensus 183 ~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 183 RLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216 (274)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 489999999999875 78999999999975
No 92
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-41 Score=359.54 Aligned_cols=209 Identities=21% Similarity=0.317 Sum_probs=165.1
Q ss_pred EEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 499 LDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 499 I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
|+++||++.|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------- 75 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK------- 75 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC-------
Confidence 89999999997421 46999999999999999999999999999999999999999999999654321110
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.||||||+| .+|+.|++||+.++.......
T Consensus 76 --------------~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-------------------------- 115 (287)
T PRK13637 76 --------------VKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS-------------------------- 115 (287)
T ss_pred --------------ccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCC--------------------------
Confidence 00112356799999998 577899999998742110000
Q ss_pred CCCCCChHHHHHHHHhcccc--cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG--YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++. .. .+..+..||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 --~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~ 184 (287)
T PRK13637 116 --EEEIENRVKRAMNIVGLDYEDY---------KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL 184 (287)
T ss_pred --HHHHHHHHHHHHHHcCCCchhh---------ccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence 000123466778877764 21 23446789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 185 ~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i 223 (287)
T PRK13637 185 NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223 (287)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 88854 389999999998765 68999999999875
No 93
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-41 Score=348.67 Aligned_cols=211 Identities=24% Similarity=0.350 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~------- 77 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS------- 77 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-------
Confidence 599999999997422 46999999999999999999999999999999999999999999999654322110
Q ss_pred hhhhcccccccchhcccccC-cceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
....... ++.++|+||++.+|.. |++||+.++......
T Consensus 78 -------------~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--------------------------- 117 (233)
T PRK11629 78 -------------SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK--------------------------- 117 (233)
T ss_pred -------------HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC---------------------------
Confidence 0000011 2569999999999875 999999763110000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......+++.++++.++++... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 118 -~~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (233)
T PRK11629 118 -KPAEINSRALEMLAAVGLEHRA---------NHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187 (233)
T ss_pred -CHHHHHHHHHHHHHHcCCchhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0000123466777777665332 234567999999999999999999999999999999999999999988
Q ss_pred HHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+..+|++++|++|+.
T Consensus 188 l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i 223 (233)
T PRK11629 188 LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRL 223 (233)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEE
Confidence 864 48999999999988877889999999864
No 94
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-40 Score=347.37 Aligned_cols=209 Identities=26% Similarity=0.405 Sum_probs=166.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~----------- 68 (236)
T cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV----------- 68 (236)
T ss_pred CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC-----------
Confidence 478999999963 35699999999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+...+++.++|++|++.+|+.|++||+.++.....
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~--------------------------------- 103 (236)
T cd03253 69 ------------TLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDAT--------------------------------- 103 (236)
T ss_pred ------------CHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCC---------------------------------
Confidence 11133567999999999999999999988642211
Q ss_pred ChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 659 STDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..++.+.++..++...... +.|+++. ..++..||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 104 -~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 104 -DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred -HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1122233333333322222 2356664 566789999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+.+..||++++|++|+.
T Consensus 183 ~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i 213 (236)
T cd03253 183 VSKGRTTIVIAHRLSTIVNADKIIVLKDGRI 213 (236)
T ss_pred hcCCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 38999999999987777999999999875
No 95
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1e-40 Score=344.66 Aligned_cols=207 Identities=24% Similarity=0.265 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|++.+ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~------- 70 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF---DVV------- 70 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE---Ecc-------
Confidence 378999999997421 16999999999999999999999999999999999999999999999543 321
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. ....+++.++|+||++.+|.. |++||+.+.......
T Consensus 71 ----------~----~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~---------------------------- 108 (218)
T cd03266 71 ----------K----EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL---------------------------- 108 (218)
T ss_pred ----------c----CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC----------------------------
Confidence 0 011235679999999999985 999999763110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 179 (218)
T cd03266 109 KGDELTARLEELADRLGMEELL---------DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHHH---------hhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 0000123456677777665332 2345679999999999999999999999999999999999999999988
Q ss_pred Hh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+.+. ..+||++++|++|+.
T Consensus 180 ~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 180 RQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 64 48999999999865 468999999999864
No 96
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=7.9e-41 Score=368.72 Aligned_cols=204 Identities=28% Similarity=0.357 Sum_probs=167.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~---------- 71 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL---------- 71 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 599999999996 35689999999999999999999999999999999999999999999965432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...++.+|||||++.+|. .|++||+.|+...... ..
T Consensus 72 ---------------~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------------------------~~ 108 (353)
T TIGR03265 72 ---------------PPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM----------------------------GR 108 (353)
T ss_pred ---------------CHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC----------------------------CH
Confidence 112456999999999995 6999999986321000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.++++.+.+ ..+.+||||||||+||||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~---------~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSER---------KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 011245677888887765433 34677999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|.|+|++||+.+. ...||+|++|++|+.
T Consensus 180 l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 180 LQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999865 578999999999964
No 97
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.3e-41 Score=368.43 Aligned_cols=211 Identities=24% Similarity=0.339 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCC--CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPT--SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~--~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|++ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~------- 73 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS------- 73 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCC-------
Confidence 4889999999972 2357999999999999999999999999999999999999999999999654322210
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.......+++||||||++.+|. .|++||+.++.... +.
T Consensus 74 -------------~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~------------~~---------------- 112 (343)
T PRK11153 74 -------------EKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA------------GT---------------- 112 (343)
T ss_pred -------------HHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc------------CC----------------
Confidence 0011123567999999999986 69999998742100 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.+.++.+++.... ...+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 113 ~~~~~~~~~~~~l~~~gL~~~~---------~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 113 PKAEIKARVTELLELVGLSDKA---------DRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhh---------hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0000123456677777665432 2345679999999999999999999999999999999999999999988
Q ss_pred Hh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 184 ~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i 219 (343)
T PRK11153 184 KDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 389999999998765 57999999999874
No 98
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-40 Score=347.95 Aligned_cols=208 Identities=25% Similarity=0.339 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 69 (239)
T cd03296 2 SIEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV---------- 69 (239)
T ss_pred EEEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999964331111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..++.++|++|++.+|. .|++||+.++....... .. ...
T Consensus 70 -------------~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~------------~~------------~~~ 110 (239)
T cd03296 70 -------------P--VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRS------------ER------------PPE 110 (239)
T ss_pred -------------C--ccccceEEEecCCcccCCCCHHHHHhhhhhhcccc------------cc------------CCH
Confidence 0 12456999999999986 59999998752110000 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (239)
T cd03296 111 AEIRAKVHELLKLVQLDWLA---------DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181 (239)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00123455667777664332 234567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. ...||++++|++|+.
T Consensus 182 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 182 LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 38999999999875 567999999999875
No 99
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-40 Score=358.64 Aligned_cols=212 Identities=21% Similarity=0.274 Sum_probs=165.9
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+|+++||+|+|+.+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~------ 74 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS------ 74 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 489999999997422 25999999999999999999999999999999999999999999999654321100
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
........++.+|||+|+| .+|..|+.||+.|+.......
T Consensus 75 -------------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~------------------------- 116 (288)
T PRK13643 75 -------------KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIP------------------------- 116 (288)
T ss_pred -------------ccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCC-------------------------
Confidence 0001123456799999988 788899999998752110000
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+++.++++.+++. ... ...+..||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 117 ---~~~~~~~~~~~l~~~~L~~~~~---------~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~ 184 (288)
T PRK13643 117 ---KEKAEKIAAEKLEMVGLADEFW---------EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM 184 (288)
T ss_pred ---HHHHHHHHHHHHHHcCCChhhc---------cCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHH
Confidence 000123456777777763 222 2345779999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ .+||+|++|++|+.
T Consensus 185 ~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 185 QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222 (288)
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 88754 589999999999865 68999999999864
No 100
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.5e-40 Score=336.59 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=158.6
Q ss_pred EEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 499 LDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 499 I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
|+++||+++|++.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 47899999997532 3699999999999999999999999999999999999999999999831
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+|+|++|++.+|+.|++||+.++... +
T Consensus 67 ----------------------~i~~~~q~~~l~~~t~~enl~~~~~~-~------------------------------ 93 (204)
T cd03250 67 ----------------------SIAYVSQEPWIQNGTIRENILFGKPF-D------------------------------ 93 (204)
T ss_pred ----------------------EEEEEecCchhccCcHHHHhccCCCc-C------------------------------
Confidence 39999999999999999999985321 0
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.++..++++.+++...... +.|+++. .+++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.
T Consensus 94 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 169 (204)
T cd03250 94 ----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169 (204)
T ss_pred ----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 1122223333333322222 2456654 566788999999999999999999999999999999999999888774
Q ss_pred -HH---hcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 734 -IE---AAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 734 -L~---~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++ +.|+|+|++||+++.+..||++++|++|+
T Consensus 170 ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 170 CILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 44 24799999999998776799999999874
No 101
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=9.4e-41 Score=345.41 Aligned_cols=206 Identities=22% Similarity=0.272 Sum_probs=162.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---------- 67 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY---SIR---------- 67 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE---ecc----------
Confidence 5789999999642267999999999999999999999999999999999999999999999543 321
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .....++.++|++|++.+| ..|++||+.++....... ..
T Consensus 68 -------~----~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 108 (220)
T cd03263 68 -------T----DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP----------------------------KS 108 (220)
T ss_pred -------c----chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC----------------------------HH
Confidence 0 0012356699999999998 579999997631100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 109 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 179 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKA---------NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179 (220)
T ss_pred HHHHHHHHHHHHcCCHHHH---------hChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 0123455667776664322 223567999999999999999999999999999999999999999998875
Q ss_pred -cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++.+ +.||++++|++|+.
T Consensus 180 ~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 210 (220)
T cd03263 180 RKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210 (220)
T ss_pred hcCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 468999999998766 57999999999864
No 102
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=2e-40 Score=348.13 Aligned_cols=219 Identities=25% Similarity=0.369 Sum_probs=166.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--------- 70 (243)
T TIGR02315 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR--------- 70 (243)
T ss_pred CeEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCC---------
Confidence 3789999999962 457999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|+||++.+|. .|++||+.++...... . .. .. .....
T Consensus 71 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~-~~-----~~-------------~~~~~ 119 (243)
T TIGR02315 71 -----------GKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKP-T-WR-----SL-------------LGRFS 119 (243)
T ss_pred -----------HHHHHHHHhheEEEcCCCcccccccHHHHHhhccccccc-c-hh-----hh-------------hcccc
Confidence 0001123567999999999886 5999999875321100 0 00 00 00000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 120 EEDKERALSALERVGLADKA---------YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred HHHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11124566777777665332 234577999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|+|+|++||+++.+ ++||++++|++|+..
T Consensus 191 ~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 191 INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 389999999998765 689999999998753
No 103
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-40 Score=343.86 Aligned_cols=201 Identities=26% Similarity=0.330 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~-------- 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE---PVT-------- 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ECc--------
Confidence 46899999996311 57999999999999999999999999999999999999999999999543 221
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..++.++||||++.+|. .|++||+.++.... +. .
T Consensus 70 -----------------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~ 104 (220)
T cd03293 70 -----------------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ------------GV----------------P 104 (220)
T ss_pred -----------------cccCcEEEEecccccccCCCHHHHHHHHHHHc------------CC----------------C
Confidence 12456999999999987 69999997642100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.+.++.+++....+ ....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 175 (220)
T cd03293 105 KAEARERAEELLELVGLSGFEN---------AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL 175 (220)
T ss_pred HHHHHHHHHHHHHHcCChhhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 0001235667777776653322 2356799999999999999999999999999999999999999999886
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEc--cCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRIS--TVD 764 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~--~g~ 764 (788)
+ .|+|+|+|||+++. .++||++++|+ +|+
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 4 38999999999875 57899999999 564
No 104
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=1.2e-40 Score=346.30 Aligned_cols=209 Identities=28% Similarity=0.335 Sum_probs=162.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEEeeccCcccccCCCc
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW-----SDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~-----~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+..+..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~----- 73 (227)
T cd03260 1 IELRDLNVYYG--DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD----- 73 (227)
T ss_pred CEEEEEEEEcC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc-----
Confidence 47899999996 357999999999999999999999999999999999999 999999999644321110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
. .....++.++|+||++.+|..|++||+.++...... .
T Consensus 74 ---------------~-~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~------------~-------------- 111 (227)
T cd03260 74 ---------------V-DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI------------K-------------- 111 (227)
T ss_pred ---------------h-HHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCC------------C--------------
Confidence 0 011235679999999999988999999874211000 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccC-CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEW-SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~-g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++.....+ .. +.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 112 -~~~~~~~~~~~~l~~~~l~~~~~~--------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 182 (227)
T cd03260 112 -LKEELDERVEEALRKAALWDEVKD--------RLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE 182 (227)
T ss_pred -cHHHHHHHHHHHHHHcCCChHHhc--------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 000012345667777766533221 11 46799999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ ..+|+|++||+++.+ ++||++++|++|+.
T Consensus 183 ~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 218 (227)
T cd03260 183 LIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218 (227)
T ss_pred HHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 8875 238999999998764 68999999999864
No 105
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.4e-40 Score=341.34 Aligned_cols=199 Identities=28% Similarity=0.304 Sum_probs=161.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---------- 65 (208)
T cd03268 1 LKTNDLTKTYG--KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGK---SYQ---------- 65 (208)
T ss_pred CEEEEEEEEEC--CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCC---ccc----------
Confidence 47899999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. . ...++.++|+||++.+|. .|++||+.++.... .
T Consensus 66 -------~---~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--------------------------------~ 101 (208)
T cd03268 66 -------K---N--IEALRRIGALIEAPGFYPNLTARENLRLLARLL--------------------------------G 101 (208)
T ss_pred -------c---h--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhc--------------------------------C
Confidence 0 0 123456999999998884 69999997642100 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ..+..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAK---------KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL 172 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHh---------hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 02345566777776653322 33567999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 173 ~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 173 RDQGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 589999999998765 67999999999863
No 106
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.7e-40 Score=347.16 Aligned_cols=216 Identities=24% Similarity=0.312 Sum_probs=163.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------- 68 (236)
T cd03219 1 LEVRGLTKRFG--GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP---------- 68 (236)
T ss_pred CeeeeeEEEEC--CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCC----------
Confidence 46899999996 357999999999999999999999999999999999999999999999644321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....+..++|+||++.+|.. |++||+.++........+... .......
T Consensus 69 ------------~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~------------------~~~~~~~ 118 (236)
T cd03219 69 ------------PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLA------------------RARREER 118 (236)
T ss_pred ------------HHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccc------------------cccccHH
Confidence 001123569999999999986 999999875321000000000 0000000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 119 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 189 (236)
T cd03219 119 EARERAEELLERVGLADLA---------DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189 (236)
T ss_pred HHHHHHHHHHHHcCccchh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677776664322 334677999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ .+||++++|++|+.
T Consensus 190 ~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 221 (236)
T cd03219 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221 (236)
T ss_pred HHCCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 589999999998765 67999999999864
No 107
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1.5e-40 Score=342.31 Aligned_cols=202 Identities=29% Similarity=0.483 Sum_probs=159.3
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~---~~~----------- 64 (213)
T cd03235 1 EVEDLTVSYG--GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK---PLE----------- 64 (213)
T ss_pred CcccceeEEC--CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCc---cHH-----------
Confidence 3689999996 357999999999999999999999999999999999999999999999542 220
Q ss_pred cccccccchhcccccCcceEEEEcccccc---CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYM---VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l---f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..++.++|++|++.+ +..|++||+.++...... +. . ...
T Consensus 65 --------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~--------------~~---------~-~~~ 106 (213)
T cd03235 65 --------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKG--------------LF---------R-RLS 106 (213)
T ss_pred --------------HHHhheEEeccccccccCCCCcHHHHHHhccccccc--------------cc---------c-CCC
Confidence 124569999999986 557999999875321000 00 0 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 107 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 107 KADKAKVDEALERVGLSELAD---------RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011235667777776653322 34567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|+|||+++.+ +.||++++|++|.
T Consensus 178 ~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 178 LRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 589999999998765 6799999998763
No 108
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=2e-40 Score=341.21 Aligned_cols=203 Identities=24% Similarity=0.351 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~----------- 67 (213)
T cd03301 1 VELENVTKRFG--NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL----------- 67 (213)
T ss_pred CEEEeeEEEEC--CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 47899999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ..++.++|++|++.+|. .|++||+.++....... ..
T Consensus 68 ------------~--~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 105 (213)
T cd03301 68 ------------P--PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP----------------------------KD 105 (213)
T ss_pred ------------C--cccceEEEEecChhhccCCCHHHHHHHHHHhcCCC----------------------------HH
Confidence 0 11356999999999985 59999997742100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 106 EIDERVREVAELLQIEHLL---------DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred HHHHHHHHHHHHcCCHHHH---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123455667776664332 234567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ .+||++++|++|+.
T Consensus 177 ~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 177 QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 389999999998754 67999999998853
No 109
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-40 Score=347.18 Aligned_cols=217 Identities=26% Similarity=0.380 Sum_probs=165.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------- 69 (241)
T cd03256 1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK---------- 69 (241)
T ss_pred CEEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC----------
Confidence 468999999963 257999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.++|+||++.+|. .|++||+.++..... .. . . . +......
T Consensus 70 ----------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~-~--~---~-------------~~~~~~~ 119 (241)
T cd03256 70 ----------GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR-ST-W--R---S-------------LFGLFPK 119 (241)
T ss_pred ----------HhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc-hh-h--h---h-------------hcccCcH
Confidence 0001123567999999999886 699999987532100 00 0 0 0 0000001
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 120 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (241)
T cd03256 120 EEKQRALAALERVGLLDKA---------YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRI 190 (241)
T ss_pred HHHHHHHHHHHHcCChhhh---------CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 1224566777777665332 234677999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+. +||++++|++|+.
T Consensus 191 ~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i 223 (241)
T cd03256 191 NREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223 (241)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3899999999987765 8999999999874
No 110
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.9e-40 Score=345.90 Aligned_cols=210 Identities=24% Similarity=0.384 Sum_probs=164.2
Q ss_pred EEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 499 LDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
|+++|+++.|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL---------- 70 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc----------
Confidence 4689999999642 34699999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|..|++||+.++......
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~------------------------------- 106 (238)
T cd03249 71 -------------NLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATD------------------------------- 106 (238)
T ss_pred -------------CHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCH-------------------------------
Confidence 111234569999999999999999999875322110
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
+++.+.++..++..+... +.|+++. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 107 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~ 183 (238)
T cd03249 107 ---EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALD 183 (238)
T ss_pred ---HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 111222222222222111 1344543 55678899999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i 215 (238)
T cd03249 184 RAMKGRTTIVIAHRLSTIRNADLIAVLQNGQV 215 (238)
T ss_pred HhcCCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 5 58999999999987779999999999865
No 111
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.3e-40 Score=340.74 Aligned_cols=207 Identities=24% Similarity=0.362 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD----------- 67 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc-----------
Confidence 468999999963 5799999999999999999999999999999999999999999999964432100
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.++|++|++.+|. .|++||+.++..... +.. ..
T Consensus 68 ----------~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-----------~~~----------------~~ 110 (213)
T cd03262 68 ----------KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK-----------GMS----------------KA 110 (213)
T ss_pred ----------chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc-----------CCC----------------HH
Confidence 0011123567999999999986 699999987521000 000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.++++... .....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 111 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 111 EAEERALELLEKVGLADKA---------DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181 (213)
T ss_pred HHHHHHHHHHHHcCCHhHh---------hhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 0123455667766654322 234567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ +.||++++|++|+
T Consensus 182 ~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 182 AEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 489999999998766 6799999999875
No 112
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=6.6e-40 Score=336.15 Aligned_cols=195 Identities=24% Similarity=0.380 Sum_probs=159.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.++++|++++|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 75 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI--------- 75 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC---------
Confidence 46999999999974335799999999999999999999999999999999999999999999964432111
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.|+|++|++.+|++|++||+.+....
T Consensus 76 --------------~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~--------------------------------- 108 (207)
T cd03369 76 --------------PLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--------------------------------- 108 (207)
T ss_pred --------------CHHHHHhhEEEEecCCcccCccHHHHhcccCCC---------------------------------
Confidence 111235679999999999999999999653210
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+++.++++ ...++..|||||+||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 109 --~~~~~~~~l~----------------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 170 (207)
T cd03369 109 --SDEEIYGALR----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170 (207)
T ss_pred --CHHHHHHHhh----------------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1122223332 1234567999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+.+..||++++|++|+.
T Consensus 171 ~~~~~tiii~th~~~~~~~~d~v~~l~~g~i 201 (207)
T cd03369 171 EFTNSTILTIAHRLRTIIDYDKILVMDAGEV 201 (207)
T ss_pred hcCCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 48999999999987767999999999864
No 113
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-40 Score=356.90 Aligned_cols=212 Identities=15% Similarity=0.260 Sum_probs=164.9
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~------ 75 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKT------ 75 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 389999999996322 46999999999999999999999999999999999999999999999644321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
........++.||||||+| .+|..|+.|||.++.......
T Consensus 76 -------------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~------------------------- 117 (286)
T PRK13646 76 -------------KDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN------------------------- 117 (286)
T ss_pred -------------ccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCC-------------------------
Confidence 0001123466799999997 688889999998752110000
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++. .. ....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 118 ---~~~~~~~~~~~l~~~gL~~~~---------~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~ 185 (286)
T PRK13646 118 ---LDEVKNYAHRLLMDLGFSRDV---------MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVM 185 (286)
T ss_pred ---HHHHHHHHHHHHHHcCCChhh---------hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH
Confidence 000123455667766553 22 13456789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 186 ~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 186 RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224 (286)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 88864 489999999998765 68999999999875
No 114
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-40 Score=340.52 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=161.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+|+|+ ++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~~~~~~~~~~--~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---------- 64 (211)
T cd03264 1 LQLENLTKRYG--KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ---DVL---------- 64 (211)
T ss_pred CEEEEEEEEEC--CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC---ccc----------
Confidence 57899999996 357999999999999 99999999999999999999999999999999543 321
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .+ ...++.++|++|++.+|.. |++||+.+..... +. ...
T Consensus 65 -------~---~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------~~----------------~~~ 105 (211)
T cd03264 65 -------K---QP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK------------GI----------------PSK 105 (211)
T ss_pred -------c---ch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHh------------CC----------------CHH
Confidence 0 01 1335679999999999975 9999997631100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 106 EVKARVDEVLELVNLGDRAK---------KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred HHHHHHHHHHHHCCCHHHHh---------CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 01234566777777653322 23567999999999999999999999999999999999999999999875
Q ss_pred -cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++.+ ++||++++|++|+.
T Consensus 177 ~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 177 GEDRIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred hCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 479999999999876 57999999999853
No 115
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.1e-40 Score=345.62 Aligned_cols=206 Identities=24% Similarity=0.347 Sum_probs=161.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------- 68 (232)
T cd03218 1 LRAENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP---------- 68 (232)
T ss_pred CeEEEEEEEeC--CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC----------
Confidence 47899999996 457999999999999999999999999999999999999999999999644321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.. |++||+.++....... ..
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 108 (232)
T cd03218 69 ------------MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS----------------------------KK 108 (232)
T ss_pred ------------HhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC----------------------------HH
Confidence 001123569999999999986 9999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.+.++.+++.... ......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 109 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 109 EREEKLEELLEEFHITHLR---------KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred HHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 0112445666666554322 344577999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++ ..+.||++++|++|+.
T Consensus 180 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 211 (232)
T cd03218 180 KDRGIGVLITDHNVRETLSITDRAYIIYEGKV 211 (232)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 5899999999985 5678999999999865
No 116
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=3.6e-40 Score=367.64 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=169.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~---------- 70 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL---------- 70 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----------
Confidence 589999999996 46799999999999999999999999999999999999999999999965432211
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+.+++.||||+|++.+ |+.|++||+.++...... ... ...
T Consensus 71 -------------~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~-----------------------~~~-~~~ 113 (402)
T PRK09536 71 -------------SARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-----------------------RFD-TWT 113 (402)
T ss_pred -------------CHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc-----------------------ccc-CCC
Confidence 112345679999999988 567999999886421100 000 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+.+.+.++++.+++..+.++ ...+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 114 ~~~~~~v~~~le~vgl~~~~~~---------~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 114 ETDRAAVERAMERTGVAQFADR---------PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184 (402)
T ss_pred HHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 1123457788888887654433 3567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+++|+++.+ ++|||+++|++|+.
T Consensus 185 l~~~g~TIIivsHdl~~~~~~adrii~l~~G~i 217 (402)
T PRK09536 185 LVDDGKTAVAAIHDLDLAARYCDELVLLADGRV 217 (402)
T ss_pred HHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 589999999999876 78999999999974
No 117
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=345.02 Aligned_cols=202 Identities=23% Similarity=0.285 Sum_probs=163.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 70 (241)
T PRK14250 3 EIEFKEVSYSSF--GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI---------- 70 (241)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc----------
Confidence 489999999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|+||++.+|+.|++||+.++.....
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~-------------------------------- 105 (241)
T PRK14250 71 -------------DVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKG-------------------------------- 105 (241)
T ss_pred -------------ChHHhhhcEEEEecCchhchhhHHHHHhcchhhcC--------------------------------
Confidence 11133567999999999999999999987421100
Q ss_pred CChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+++. ... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 106 EKNVDVEYYLSIVGLNKEYA---------TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred cHHHHHHHHHHHcCCCHHHh---------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0123455666666653 111 234667999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||+|++|++|+.
T Consensus 177 ~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 177 LKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210 (241)
T ss_pred HHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 389999999998765 57999999999875
No 118
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=5e-40 Score=327.82 Aligned_cols=169 Identities=34% Similarity=0.532 Sum_probs=147.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW----------- 69 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC-----------
Confidence 478999999975345699999999999999999999999999999999999999999999965432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|++|++.+|+.|++||+
T Consensus 70 ------------~~~~~~~~i~~~~q~~~~~~~tv~~~l----------------------------------------- 96 (173)
T cd03246 70 ------------DPNELGDHVGYLPQDDELFSGSIAENI----------------------------------------- 96 (173)
T ss_pred ------------CHHHHHhheEEECCCCccccCcHHHHC-----------------------------------------
Confidence 111235679999999988877777664
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 97 ---------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 97 ---------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988864
Q ss_pred -cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 737 -AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+.+.+..||++++|++|+
T Consensus 144 ~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 144 AAGATRIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred hCCCEEEEEeCCHHHHHhCCEEEEEECCC
Confidence 5899999999998878899999999885
No 119
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=3.7e-40 Score=342.97 Aligned_cols=211 Identities=25% Similarity=0.362 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~------- 78 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD------- 78 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC-------
Confidence 699999999997422 35999999999999999999999999999999999999999999999654322110
Q ss_pred hhhhcccccccchhccc-ccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSM-NRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~-~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.... ...++.++|++|++.++.. |+.||+.++.......
T Consensus 79 -------------~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~-------------------------- 119 (228)
T PRK10584 79 -------------EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGES-------------------------- 119 (228)
T ss_pred -------------HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCC--------------------------
Confidence 0000 0113569999999999875 9999997642100000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 120 --~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 188 (228)
T PRK10584 120 --SRQSRNGAKALLEQLGLGKRLD---------HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 (228)
T ss_pred --HHHHHHHHHHHHHHcCCHhHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0011245667777777653322 23567999999999999999999999999999999999999999988
Q ss_pred HHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++....||++++|++|+.
T Consensus 189 l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i 224 (228)
T PRK10584 189 LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224 (228)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 853 38999999999987778999999998853
No 120
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-40 Score=358.10 Aligned_cols=229 Identities=20% Similarity=0.290 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+...... .+-
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~--~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKK--TKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccc--ccc
Confidence 389999999997432 259999999999999999999999999999999999999999999997544211000 000
Q ss_pred chhhhcccccccc---hhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 575 DSLEVNSQNMNGE---LTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 575 ~~~~~~~~~~~~~---~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
-...+.+.++... ........++.||||||+| .+|..|++|||.|+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~---------------------- 137 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS---------------------- 137 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------------------
Confidence 0000000000000 0001123457799999986 678889999998852110000
Q ss_pred hhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
.....+++.++++.+++. ... ...+.+||||||||++|||||+.+|++|||||||++||+.+..
T Consensus 138 ------~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 138 ------KEEAKKRAAKYIELVGLDESYL---------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred ------HHHHHHHHHHHHHHcCCChhhh---------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 001123466778877764 222 2346789999999999999999999999999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 729 HLYEQIEA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++ .|+|+|+|||+++. .++||||++|++|+.
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i 243 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE
Confidence 99988864 58999999999875 578999999999864
No 121
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.3e-40 Score=365.73 Aligned_cols=205 Identities=29% Similarity=0.377 Sum_probs=166.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC--ceEEEeeccCcccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR--GKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~--G~I~~~~~~~~~i~~~~~~~ 574 (788)
+.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+..+.
T Consensus 4 ~~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~------- 74 (362)
T TIGR03258 4 GGIRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA------- 74 (362)
T ss_pred eEEEEEEEEEEEC--CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC-------
Confidence 4699999999996 3579999999999999999999999999999999999999999 9999965432111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
+ ..++.||||+|++.+|. .|++|||.|+......
T Consensus 75 ----------------~--~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~--------------------------- 109 (362)
T TIGR03258 75 ----------------P--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM--------------------------- 109 (362)
T ss_pred ----------------C--HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC---------------------------
Confidence 0 12356999999999996 4999999986211000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......++.++++.++++.+.+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.
T Consensus 110 -~~~~~~~~v~~~l~~~gL~~~~~---------~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 179 (362)
T TIGR03258 110 -PKADIAERVADALKLVGLGDAAA---------HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE 179 (362)
T ss_pred -CHHHHHHHHHHHHHhcCCCchhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 00011235677788887765443 34667999999999999999999999999999999999999999988
Q ss_pred HHh---c--CCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 734 IEA---A--GITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~--g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
|++ + |+|+|+|||+++. ...||+|++|++|+.
T Consensus 180 l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i 217 (362)
T TIGR03258 180 IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL 217 (362)
T ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 753 3 7999999999865 578999999999964
No 122
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-40 Score=346.83 Aligned_cols=196 Identities=27% Similarity=0.353 Sum_probs=162.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 11 ~~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~---~~--------- 76 (257)
T PRK11247 11 TPLLLNAVSKRYG--ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA---PL--------- 76 (257)
T ss_pred CcEEEEEEEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE---EH---------
Confidence 3599999999996 357999999999999999999999999999999999999999999998432 21
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...++.++|++|++.+|. .|++||+.++...
T Consensus 77 ----------------~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-------------------------------- 108 (257)
T PRK11247 77 ----------------AEAREDTRLMFQDARLLPWKKVIDNVGLGLKG-------------------------------- 108 (257)
T ss_pred ----------------HHhhCceEEEecCccCCCCCcHHHHHHhcccc--------------------------------
Confidence 123456999999999987 6999999875210
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++.... ...+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 109 --~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 177 (257)
T PRK11247 109 --QWRDAALQALAAVGLADRA---------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177 (257)
T ss_pred --hHHHHHHHHHHHcCChhHh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0123455667777664322 23467799999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ +.||+|++|++|+.
T Consensus 178 ~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 178 SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 489999999998764 68999999999875
No 123
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-40 Score=346.18 Aligned_cols=211 Identities=22% Similarity=0.337 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------- 73 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS------- 73 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC-------
Confidence 378999999996421 27999999999999999999999999999999999999999999999654321110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.......++.++|+||++.+|. .|++||+.++.......
T Consensus 74 -------------~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~--------------------------- 113 (233)
T cd03258 74 -------------GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP--------------------------- 113 (233)
T ss_pred -------------HHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCC---------------------------
Confidence 0001122467999999999997 59999997641100000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.+.++.+++....+ ....+||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 114 -KAEIEERVLELLELVGLEDKAD---------AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred -HHHHHHHHHHHHHHCCChhhhh---------cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 0001234566777776653322 345679999999999999999999999999999999999999999888
Q ss_pred Hh---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ . |+|+|++||+++.+ ..||++++|++|+.
T Consensus 184 ~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 219 (233)
T cd03258 184 RDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219 (233)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 3 89999999998765 67999999999864
No 124
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=5.6e-40 Score=361.93 Aligned_cols=208 Identities=28% Similarity=0.361 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~L~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---------- 69 (353)
T PRK10851 2 SIEIANIKKSFG--RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL---------- 69 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...++.|+||||++.+|. .|++||+.|+...... ......
T Consensus 70 ---------------~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~------------------------~~~~~~ 110 (353)
T PRK10851 70 ---------------HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR------------------------RERPNA 110 (353)
T ss_pred ---------------CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc------------------------ccCCCH
Confidence 112456999999999996 5999999986321000 000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ .++.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 111 AAIKAKVTQLLEMVQLAHLAD---------RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred HHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 011245667788877754332 34678999999999999999999999999999999999999999888864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ...||+|++|++|+.
T Consensus 182 l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 182 LHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999865 578999999999964
No 125
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=5.7e-40 Score=363.90 Aligned_cols=205 Identities=27% Similarity=0.393 Sum_probs=166.6
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 13 ~~L~l~~l~~~~~--~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 81 (375)
T PRK09452 13 PLVELRGISKSFD--GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV--------- 81 (375)
T ss_pred ceEEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 3699999999996 45799999999999999999999999999999999999999999999965432211
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...++.||||||++.+|. .|++|||.|+...... .
T Consensus 82 ----------------~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~----------------------------~ 117 (375)
T PRK09452 82 ----------------PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT----------------------------P 117 (375)
T ss_pred ----------------CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC----------------------------C
Confidence 112457999999999995 5999999986321000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|+
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~---------~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 188 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQ---------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELK 188 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 0001235667788777764433 3456799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+.+. ...||+|++|++|+.
T Consensus 189 ~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 189 ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 48999999999865 578999999999964
No 126
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.2e-40 Score=357.06 Aligned_cols=206 Identities=25% Similarity=0.316 Sum_probs=164.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 6 ~~i~i~~l~k~~~--~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~---~~-------- 72 (306)
T PRK13537 6 APIDFRNVEKRYG--DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP---VP-------- 72 (306)
T ss_pred ceEEEEeEEEEEC--CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe---cc--------
Confidence 3699999999996 4579999999999999999999999999999999999999999999996443 31
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. .+ ...++.||||||++.+|. .|++||+.|.... .+. .
T Consensus 73 ---------~---~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~------------~~~----------------~ 111 (306)
T PRK13537 73 ---------S---RA-RHARQRVGVVPQFDNLDPDFTVRENLLVFGRY------------FGL----------------S 111 (306)
T ss_pred ---------c---ch-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH------------cCC----------------C
Confidence 0 01 123567999999999986 5999999752100 000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
......++.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~ 182 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKA---------DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHh---------cCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 000113455667766664322 23356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ +.||+|++|++|+.
T Consensus 183 ~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 183 SLLARGKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 5 589999999998765 68999999999974
No 127
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-40 Score=355.97 Aligned_cols=211 Identities=19% Similarity=0.283 Sum_probs=164.8
Q ss_pred EEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 499 LDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 499 I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~------- 75 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGK------- 75 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECcccc-------
Confidence 89999999997422 46999999999999999999999999999999999999999999999654321100
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
........++.||||||+| .+|+.|+.|||.|+.... +..
T Consensus 76 ------------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~------------~~~-------------- 117 (290)
T PRK13634 76 ------------KNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF------------GVS-------------- 117 (290)
T ss_pred ------------ccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc------------CCC--------------
Confidence 0001113456799999997 688889999998752110 000
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+.+.++++.+++. ... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 118 --~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~ 186 (290)
T PRK13634 118 --EEDAKQKAREMIELVGLPEELL---------ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186 (290)
T ss_pred --HHHHHHHHHHHHHHCCCChhhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 000113456677777764 222 23467799999999999999999999999999999999999999998
Q ss_pred HHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .|.|+|+|||+++.+ ++||||++|++|+.
T Consensus 187 ~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 187 MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV 224 (290)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8854 389999999998765 68999999999874
No 128
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=3.8e-40 Score=341.27 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=159.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------- 68 (222)
T cd03224 1 LEVENLNAGYG--KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP---------- 68 (222)
T ss_pred CEEeeEEeecC--CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCC----------
Confidence 57899999996 357999999999999999999999999999999999999999999999643321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.. |++||+.++...... .
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~------------------------------~ 106 (222)
T cd03224 69 ------------PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRR------------------------------A 106 (222)
T ss_pred ------------HHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCc------------------------------h
Confidence 001124569999999999986 999999875321000 0
Q ss_pred CChHHHHHHHHhc-ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDV-KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~-~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+ +++.. ....+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 107 ~~~~~~~~~l~~~~~l~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 107 KRKARLERVYELFPRLKER---------RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred hHHHHHHHHHHHHHhhhhh---------hhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 0112233444443 12211 1344667999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||++++|++|+.
T Consensus 178 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (222)
T cd03224 178 LRDEGVTILLVEQNARFALEIADRAYVLERGRV 210 (222)
T ss_pred HHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeE
Confidence 58999999999875 578999999999864
No 129
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-40 Score=365.88 Aligned_cols=204 Identities=25% Similarity=0.342 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~---------- 70 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV---------- 70 (369)
T ss_pred EEEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..++.||||+|++.+|. .|++||+.|+...... ..
T Consensus 71 -------------~--~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~----------------------------~~ 107 (369)
T PRK11000 71 -------------P--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----------------------------KK 107 (369)
T ss_pred -------------C--HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC----------------------------CH
Confidence 0 12356999999999996 5999999885311000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+|||||||||+|||||+.+|++||||||||+||+.+.+.+.+.|++
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~---------~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLD---------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 001235667788777754332 33567999999999999999999999999999999999999999888754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ...||+|++|++|+.
T Consensus 179 l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred HHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999865 568999999999964
No 130
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1.3e-39 Score=322.81 Aligned_cols=163 Identities=56% Similarity=0.967 Sum_probs=147.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~----------------- 62 (166)
T cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE----------------- 62 (166)
T ss_pred CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------------
Confidence 468999999964 35799999999999999999999999999999999999999999999831
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
++.++|++|++.+++.|++||+.++
T Consensus 63 -----------------~~~i~~~~q~~~~~~~tv~~nl~~~-------------------------------------- 87 (166)
T cd03223 63 -----------------GEDLLFLPQRPYLPLGTLREQLIYP-------------------------------------- 87 (166)
T ss_pred -----------------CceEEEECCCCccccccHHHHhhcc--------------------------------------
Confidence 1459999999999989999999763
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAG 738 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g 738 (788)
+...||||||||++|||||+++|+++||||||++||+++.+.+.+.+++.+
T Consensus 88 -----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 138 (166)
T cd03223 88 -----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138 (166)
T ss_pred -----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC
Confidence 013499999999999999999999999999999999999999999998878
Q ss_pred CEEEEEecCcchhhcCCEEEEEccC
Q 040758 739 ITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
+|+|++||+.+....||++++|+++
T Consensus 139 ~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 139 ITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred CEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999999888899999999875
No 131
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-40 Score=352.45 Aligned_cols=208 Identities=25% Similarity=0.360 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~---------- 74 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE---------- 74 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----------
Confidence 5999999999964345799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+....++.|+|++|++ .++..|+.|||.++.......
T Consensus 75 -------------~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~---------------------------- 113 (279)
T PRK13635 75 -------------TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP---------------------------- 113 (279)
T ss_pred -------------cHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC----------------------------
Confidence 1112345699999998 456789999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 184 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLN---------REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVR 184 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001234667777777654333 3356799999999999999999999999999999999999999999886
Q ss_pred h---c-CCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ . |+|+|++||+++.+..||+|++|++|+.
T Consensus 185 ~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i 218 (279)
T PRK13635 185 QLKEQKGITVLSITHDLDEAAQADRVIVMNKGEI 218 (279)
T ss_pred HHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 4 3 8999999999887777999999999864
No 132
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=5.1e-40 Score=343.82 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=162.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~---------- 68 (236)
T TIGR03864 1 ALEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA---------- 68 (236)
T ss_pred CEEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC----------
Confidence 378999999996 45799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+. ..++.++|++|++.++ ..|++||+.++....... .
T Consensus 69 -------------~~-~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~----------------------------~ 106 (236)
T TIGR03864 69 -------------PR-AALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----------------------------R 106 (236)
T ss_pred -------------Ch-hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC----------------------------H
Confidence 11 1234699999999885 579999997642100000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++.... ...+.+||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 107 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 107 AEARERIAALLARLGLAERA---------DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred HHHHHHHHHHHHHcCChhhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 00123455667766654322 344567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+..||++++|++|+.
T Consensus 178 ~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i 210 (236)
T TIGR03864 178 LCRDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210 (236)
T ss_pred HHHhCCCEEEEEecChhhHhhCCEEEEEeCCeE
Confidence 38999999999987777999999999864
No 133
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-40 Score=340.38 Aligned_cols=204 Identities=24% Similarity=0.292 Sum_probs=162.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~---~~~---------- 65 (220)
T cd03265 1 IEVENLVKKYG--DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH---DVV---------- 65 (220)
T ss_pred CEEEEEEEEEC--CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ecC----------
Confidence 57899999996 357999999999999999999999999999999999999999999999643 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .+ ...++.++|+||++.++.. |++||+.++... .+. ...
T Consensus 66 -------~---~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~~~----------------~~~ 106 (220)
T cd03265 66 -------R---EP-REVRRRIGIVFQDLSVDDELTGWENLYIHARL------------YGV----------------PGA 106 (220)
T ss_pred -------c---Ch-HHHhhcEEEecCCccccccCcHHHHHHHHHHH------------cCC----------------CHH
Confidence 0 00 1234579999999998875 999999763100 000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.++++...+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 107 ERRERIDELLDFVGLLEAAD---------RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 11235667788777654322 23567999999999999999999999999999999999999999988864
Q ss_pred --c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ |+|+|++||+++.+ .+||++++|++|+.
T Consensus 178 ~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 3 89999999998765 67999999999864
No 134
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.6e-40 Score=351.28 Aligned_cols=208 Identities=23% Similarity=0.341 Sum_probs=165.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~---------- 76 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE---------- 76 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC----------
Confidence 6999999999974356799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.++|++|++ .++..|++||+.++.......
T Consensus 77 -------------~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~---------------------------- 115 (271)
T PRK13632 77 -------------NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP---------------------------- 115 (271)
T ss_pred -------------CHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC----------------------------
Confidence 1113456799999998 455679999998742100000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~ 186 (271)
T PRK13632 116 PKKMKDIIDDLAKKVGMEDYLD---------KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMV 186 (271)
T ss_pred HHHHHHHHHHHHHHcCCHHHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001123566777776654322 3456799999999999999999999999999999999999999999886
Q ss_pred h---c-CCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ . ++|+|++||+++.+..||++++|++|+.
T Consensus 187 ~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i 220 (271)
T PRK13632 187 DLRKTRKKTLISITHDMDEAILADKVIVFSEGKL 220 (271)
T ss_pred HHHHhcCcEEEEEEechhHHhhCCEEEEEECCEE
Confidence 4 3 5899999999887778999999999874
No 135
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-40 Score=351.79 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ml~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 69 (274)
T PRK13644 1 MIRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF---------- 69 (274)
T ss_pred CEEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcc----------
Confidence 3789999999963 45699999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
......++.++|++|+|. ++..|+.||+.++.......
T Consensus 70 ------------~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~---------------------------- 109 (274)
T PRK13644 70 ------------SKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLP---------------------------- 109 (274)
T ss_pred ------------ccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCC----------------------------
Confidence 001123467999999985 56789999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.++++... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 110 PIEIRKRVDRALAEIGLEKYR---------HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHh---------cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123456667777665432 23456799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 181 ~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i 213 (274)
T PRK13644 181 KLHEKGKTIVYITHNLEELHDADRIIVMDRGKI 213 (274)
T ss_pred HHHhCCCEEEEEecCHHHHhhCCEEEEEECCEE
Confidence 4 58999999999988788999999999874
No 136
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.7e-39 Score=335.70 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=161.0
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
.+.|+.|+|+. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 ~~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~----------- 69 (218)
T cd03290 2 QVTNGYFSWGS-GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPS----------- 69 (218)
T ss_pred eeeeeEEecCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccc-----------
Confidence 46789999975 467999999999999999999999999999999999999999999999644321110
Q ss_pred cccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
. .......++.++|++|++.+|+.|++||+.++... .
T Consensus 70 ----~----~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~-~---------------------------------- 106 (218)
T cd03290 70 ----F----EATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-N---------------------------------- 106 (218)
T ss_pred ----c----cccchhhcceEEEEcCCCccccccHHHHHhhcCcC-C----------------------------------
Confidence 0 00011235679999999999999999999875311 0
Q ss_pred hHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH--HH-
Q 040758 660 TDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE--QI- 734 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~--~L- 734 (788)
.++..++++.+++....+ .+.|+++. ..+...||||||||++|||||+.+|++|||||||++||+.+...+.+ .+
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~ 186 (218)
T cd03290 107 KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186 (218)
T ss_pred HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 111223333333332221 12455554 55678899999999999999999999999999999999999988776 33
Q ss_pred --HhcCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 735 --EAAGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 735 --~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
++.|+|+|++||+.+.+..||++++|++|
T Consensus 187 ~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 187 FLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 34589999999999888889999999987
No 137
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=8.2e-40 Score=339.89 Aligned_cols=201 Identities=28% Similarity=0.418 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 74 (225)
T PRK10247 7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL---------- 74 (225)
T ss_pred eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcC----------
Confidence 699999999996 45799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|+.|++||+.++.... ...
T Consensus 75 -------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~------------------------------~~~ 111 (225)
T PRK10247 75 -------------KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR------------------------------NQQ 111 (225)
T ss_pred -------------CHHHHHhccEEEecccccccccHHHHHHhHHhhc------------------------------CCC
Confidence 0112346799999999999899999997631000 000
Q ss_pred CChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+++.. . ....+.+||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 112 PDPAIFLDDLERFALPDTI---------LTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred hHHHHHHHHHHHcCCChHH---------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11234556677766531 1 1344678999999999999999999999999999999999999999888764
Q ss_pred ----cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 737 ----AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.|+|+|++||+++.++.||++++|++
T Consensus 183 ~~~~~~~tvii~sh~~~~~~~~d~i~~l~~ 212 (225)
T PRK10247 183 YVREQNIAVLWVTHDKDEINHADKVITLQP 212 (225)
T ss_pred HHHhcCCEEEEEECChHHHHhCCEEEEEec
Confidence 38999999999988788999999964
No 138
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.6e-40 Score=345.31 Aligned_cols=213 Identities=26% Similarity=0.317 Sum_probs=165.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.....
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~---- 74 (247)
T TIGR00972 1 AIEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK---- 74 (247)
T ss_pred CEEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc----
Confidence 378999999996 356999999999999999999999999999999999999998 999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|+||++.+|..|+.||+.++.... +..
T Consensus 75 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~------------~~~------------- 112 (247)
T TIGR00972 75 -----------------IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLH------------GIK------------- 112 (247)
T ss_pred -----------------cchHHHHhheEEEecCcccCCCCHHHHHHhHHHhc------------CCC-------------
Confidence 01113356799999999999999999997642100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++..... +.....+.+||||||||++|||||+++|+++||||||++||+.+...+.+
T Consensus 113 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 185 (247)
T TIGR00972 113 --DKKELDEIVEESLKKAALWDEVK-----DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185 (247)
T ss_pred --CHHHHHHHHHHHHHHcCCCcchh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00001234566777777652110 11234467899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ +++|+|+|||+++.+ ..||++++|++|+.
T Consensus 186 ~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 186 LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8875 468999999999755 68999999999875
No 139
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=361.89 Aligned_cols=206 Identities=25% Similarity=0.322 Sum_probs=166.3
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 17 ~~~l~l~~v~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-------- 86 (377)
T PRK11607 17 TPLLEIRNLTKSFD--GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-------- 86 (377)
T ss_pred CceEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC--------
Confidence 34699999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...++.||||||++.+|. .|+.|||.|+.......
T Consensus 87 -----------------~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~--------------------------- 122 (377)
T PRK11607 87 -----------------PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP--------------------------- 122 (377)
T ss_pred -----------------CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC---------------------------
Confidence 123467999999999996 59999999863210000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.+.++.+++..+.+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|
T Consensus 123 -~~~~~~~v~~~l~~l~L~~~~~---------~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 192 (377)
T PRK11607 123 -KAEIASRVNEMLGLVHMQEFAK---------RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 (377)
T ss_pred -HHHHHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0001235667788777764433 345679999999999999999999999999999999999999888765
Q ss_pred H----hcCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 E----AAGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~----~~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ +.|.|+|++||+.+. ...||+|++|++|+.
T Consensus 193 ~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 4 358999999999865 578999999999964
No 140
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-40 Score=344.91 Aligned_cols=206 Identities=24% Similarity=0.305 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 68 (242)
T cd03295 1 IEFENVTKRYGG-GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ----------- 68 (242)
T ss_pred CEEEEEEEEeCC-cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC-----------
Confidence 468999999963 25799999999999999999999999999999999999999999999965432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|+||++.+|. .|++||+.++...... ...
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------------------------~~~ 108 (242)
T cd03295 69 ------------DPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW----------------------------PKE 108 (242)
T ss_pred ------------ChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC----------------------------CHH
Confidence 11123567999999999996 6999999764210000 000
Q ss_pred CChHHHHHHHHhccccc--ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGY--ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~--~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+++.. . ....+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 109 ~~~~~~~~~l~~l~l~~~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 109 KIRERADELLALVGLDPAEF---------ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred HHHHHHHHHHHHcCCCcHHH---------HhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 01234567777776652 1 133467799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++. ...||+|++|++|+.
T Consensus 180 ~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i 214 (242)
T cd03295 180 RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214 (242)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 38999999999875 578999999999875
No 141
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-40 Score=336.43 Aligned_cols=201 Identities=27% Similarity=0.409 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~---~~~---------- 65 (210)
T cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK---PLD---------- 65 (210)
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC---chh----------
Confidence 47899999996 457999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. ..++.++|++|++.+|.. |++||+.+..... +. ...
T Consensus 66 ------------~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~~ 103 (210)
T cd03269 66 ------------I--AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK------------GL----------------KKE 103 (210)
T ss_pred ------------H--HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc------------CC----------------ChH
Confidence 0 124569999999999875 9999997631100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++.... .....+||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 104 EARRRIDEWLERLELSEYA---------NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL 174 (210)
T ss_pred HHHHHHHHHHHHcCChHHH---------hCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0123456677776654322 234567999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ++||++++|++|+.
T Consensus 175 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 206 (210)
T cd03269 175 ARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206 (210)
T ss_pred HHCCCEEEEECCCHHHHHHhhhEEEEEeCCEE
Confidence 489999999998765 67999999998863
No 142
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-40 Score=346.16 Aligned_cols=214 Identities=24% Similarity=0.268 Sum_probs=165.0
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 6 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 79 (254)
T PRK14273 6 AIIETENLNLFYT--DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN---- 79 (254)
T ss_pred ceEEEeeeEEEeC--CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc----
Confidence 4799999999996 35799999999999999999999999999999999999997 489999965431100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|++|++.+|..|++|||.++......
T Consensus 80 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~------------------------- 117 (254)
T PRK14273 80 -----------------NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT------------------------- 117 (254)
T ss_pred -----------------cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCC-------------------------
Confidence 00111345679999999999989999999875210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 118 --~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 190 (254)
T PRK14273 118 --KDKKKLDEIVEQSLKKSALWNEVK-----DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190 (254)
T ss_pred --CCHHHHHHHHHHHHHHhCCchhhH-----HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH
Confidence 000001234555666665521110 1113346789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|+|||+++.+ +.||++++|++|+.
T Consensus 191 ~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 191 ELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCI 227 (254)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999999865 67999999999875
No 143
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-40 Score=352.00 Aligned_cols=209 Identities=20% Similarity=0.347 Sum_probs=165.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +..
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~---~~~-------- 72 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP---IDY-------- 72 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE---CCC--------
Confidence 6999999999963 4579999999999999999999999999999999999999999999996543 210
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. .......++.+||+||++ .+|+.|++||+.++.......
T Consensus 73 -------~---~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---------------------------- 114 (283)
T PRK13636 73 -------S---RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---------------------------- 114 (283)
T ss_pred -------C---cchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCC----------------------------
Confidence 0 001113456799999998 578899999998742110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 115 ~~~~~~~~~~~l~~~gL~~~~---------~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 115 EDEVRKRVDNALKRTGIEHLK---------DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred HHHHHHHHHHHHHHCCChhhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 000123456677777765432 23467899999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ .+||++++|++|+.
T Consensus 186 ~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i 220 (283)
T PRK13636 186 EMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220 (283)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 389999999999876 58999999999875
No 144
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1e-39 Score=339.24 Aligned_cols=211 Identities=27% Similarity=0.383 Sum_probs=159.0
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|++.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-------- 73 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS-------- 73 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccc--------
Confidence 78999999996421 26999999999999999999999999999999999999999999999644321110
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc--ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.......++.++|++|++ .++ ..|++||+.++.......
T Consensus 74 ------------~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-------------------------- 115 (228)
T cd03257 74 ------------RRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-------------------------- 115 (228)
T ss_pred ------------hhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--------------------------
Confidence 000113456799999999 344 469999997531100000
Q ss_pred CCCCCChHH-HHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 654 KSSKPSTDD-LIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 654 ~~~~~~~~~-~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+. ..+.++.+++. .. ....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 -~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 185 (228)
T cd03257 116 -SKKEARKEAVLLLLVGVGLPEEV---------LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 (228)
T ss_pred -cHHHHHHHHHHHHHHHCCCChhH---------hhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 00000011 12455655542 11 13446779999999999999999999999999999999999999999
Q ss_pred HHHHh---c-CCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 732 EQIEA---A-GITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~-g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|++ + |+|+|++||+++.+. .||++++|++|+.
T Consensus 186 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 186 DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224 (228)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEE
Confidence 98864 3 899999999998765 8999999999864
No 145
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=8.3e-40 Score=348.91 Aligned_cols=210 Identities=22% Similarity=0.304 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 7 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~--------- 75 (269)
T PRK11831 7 LVDMRGVSFTRG--NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS--------- 75 (269)
T ss_pred eEEEeCeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|+||++.+|.. |+.||+.++..... .. ..
T Consensus 76 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-----------~~----------------~~ 117 (269)
T PRK11831 76 -----------RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT-----------QL----------------PA 117 (269)
T ss_pred -----------hhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc-----------CC----------------CH
Confidence 00111234569999999999976 99999976411000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 118 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 118 PLLHSTVMMKLEAVGLRGAA---------KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 00123455667777665332 233567999999999999999999999999999999999999999888864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ +.||++++|++|+.
T Consensus 189 ~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i 222 (269)
T PRK11831 189 LNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI 222 (269)
T ss_pred HHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEE
Confidence 389999999998654 67999999999864
No 146
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=9.2e-40 Score=342.67 Aligned_cols=209 Identities=23% Similarity=0.333 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 69 (240)
T PRK09493 1 MIEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK--------- 69 (240)
T ss_pred CEEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC---------
Confidence 378999999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......++.++|++|++.++. .|++||+.++..... +. ..
T Consensus 70 ------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----------~~----------------~~ 110 (240)
T PRK09493 70 ------------VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR-----------GA----------------SK 110 (240)
T ss_pred ------------hhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc-----------CC----------------CH
Confidence 011133567999999998886 599999987421000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.++++... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 111 EEAEKQARELLAKVGLAERA---------HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred HHHHHHHHHHHHHcCChHHH---------hcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00123456677776664322 234567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 182 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 182 LAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214 (240)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998776 57999999999875
No 147
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-39 Score=334.74 Aligned_cols=201 Identities=24% Similarity=0.314 Sum_probs=159.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----------- 65 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA----------- 65 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC-----------
Confidence 478999999963 32 399999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ..++.++|++|++.+|.. |++||+.++.... .. ...
T Consensus 66 ------------~--~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~-~~---------------------------~~~ 103 (211)
T cd03298 66 ------------P--PADRPVSMLFQENNLFAHLTVEQNVGLGLSPG-LK---------------------------LTA 103 (211)
T ss_pred ------------C--HhHccEEEEecccccCCCCcHHHHHhcccccc-cC---------------------------ccH
Confidence 0 123569999999999975 9999998753210 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+++...+.+.|++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 104 EDRQAIEVALARVGLAGLEK---------RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174 (211)
T ss_pred HHHHHHHHHHHHcCCHHHHh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 12345667788777654322 23567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 175 ~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207 (211)
T ss_pred HHhcCCEEEEEecCHHHHHhhhCEEEEEECCEE
Confidence 389999999998765 67999999999864
No 148
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-40 Score=345.22 Aligned_cols=213 Identities=23% Similarity=0.267 Sum_probs=164.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 79 (253)
T PRK14242 6 KMEARGLSFFYG--DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH---- 79 (253)
T ss_pred EEEEeeeEEEEC--CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc----
Confidence 599999999996 3579999999999999999999999999999999999975 68999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+++.++|++|++.+|..|++||+.++.... +..
T Consensus 80 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~------------~~~------------- 117 (253)
T PRK14242 80 -----------------VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVN------------GVK------------- 117 (253)
T ss_pred -----------------cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHc------------CCC-------------
Confidence 01113456799999999999899999998742100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++..... +..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 118 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 190 (253)
T PRK14242 118 --DKAYLAERVERSLRHAALWDEVK-----DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE 190 (253)
T ss_pred --CHHHHHHHHHHHHHHcCCchhhh-----HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00001234556677666532110 01234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 191 ~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14242 191 LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKL 226 (253)
T ss_pred HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEE
Confidence 8875 578999999998765 68999999999875
No 149
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-39 Score=345.71 Aligned_cols=215 Identities=23% Similarity=0.264 Sum_probs=166.3
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 11 ~~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~--- 85 (260)
T PRK10744 11 PSKIQVRNLNFYYG--KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP--- 85 (260)
T ss_pred CceEEEEEEEEEeC--CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc---
Confidence 45799999999996 3579999999999999999999999999999999999986 5899999964432100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
..+...+++.++|++|++.+|..|++||+.++..... +.
T Consensus 86 ------------------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~-----------~~------------ 124 (260)
T PRK10744 86 ------------------KQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE-----------KL------------ 124 (260)
T ss_pred ------------------ccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcC-----------CC------------
Confidence 0011234567999999999999999999987521000 00
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+++.++++.+++..... +.......+||||||||++|||||+.+|++|||||||++||+.++..+
T Consensus 125 ----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 195 (260)
T PRK10744 125 ----SRAEMDERVEWALTKAALWNEVK-----DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI 195 (260)
T ss_pred ----CHHHHHHHHHHHHHHcCCChhhH-----HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHH
Confidence 00001234566677766532110 112345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ .+||++++|++|+.
T Consensus 196 ~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 233 (260)
T PRK10744 196 EELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233 (260)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 998875 478999999998765 68999999999875
No 150
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.9e-40 Score=354.08 Aligned_cols=205 Identities=24% Similarity=0.334 Sum_probs=162.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~--------- 69 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP---VP--------- 69 (303)
T ss_pred EEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---Cc---------
Confidence 599999999996 3579999999999999999999999999999999999999999999996432 21
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. .....++.+||+||++.++. .|++||+.+..... +. ..
T Consensus 70 --------~----~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~ 109 (303)
T TIGR01288 70 --------S----RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF------------GM----------------ST 109 (303)
T ss_pred --------c----cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc------------CC----------------CH
Confidence 0 00123567999999999885 59999997421000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 110 ~~~~~~~~~ll~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 110 REIEAVIPSLLEFARLESKA---------DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred HHHHHHHHHHHHHCCChhHh---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 00112345566666654322 233567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||+|++|++|+.
T Consensus 181 ~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 181 LLARGKTILLTTHFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred HHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999974
No 151
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=341.84 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=166.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..+.
T Consensus 2 ~~~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~------- 72 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ------- 72 (246)
T ss_pred ceeeeeeEEEEC--CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC-------
Confidence 488999999996 3579999999999999999999999999999999999985 7999999965432111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.++|+||++.+|+.|++||+.++...... .+
T Consensus 73 ----------------~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~------------~~-------------- 110 (246)
T PRK14269 73 ----------------DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM------------IK-------------- 110 (246)
T ss_pred ----------------CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc------------cc--------------
Confidence 111335679999999999999999999875210000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.+.++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l 185 (246)
T PRK14269 111 NKDEEEALVVDCLQKVGLFEEVK-----DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185 (246)
T ss_pred ChHHHHHHHHHHHHHcCCChhhh-----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 00011234566777777642211 1123456789999999999999999999999999999999999999999988
Q ss_pred Hh--cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 735 EA--AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 735 ~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
++ .++|+|+|||+++.+ +.||++++|++|+..
T Consensus 186 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred HHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 75 589999999998754 689999999998753
No 152
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-39 Score=345.48 Aligned_cols=228 Identities=19% Similarity=0.268 Sum_probs=171.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 12 ~~l~i~nl~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~--- 86 (269)
T PRK14259 12 IIISLQNVTISYG--TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR--- 86 (269)
T ss_pred ceEEEEeEEEEEC--CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence 4699999999996 3579999999999999999999999999999999999987 68999999644321000
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.+....++.++|+||++.+|..|++||+.++......
T Consensus 87 ------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~------------------------- 123 (269)
T PRK14259 87 ------------------VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY------------------------- 123 (269)
T ss_pred ------------------CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-------------------------
Confidence 0011235679999999999988999999875311000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
....++++.++++.+++... ++. ......+||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 124 ----~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l 193 (269)
T PRK14259 124 ----TGDMDELVERSLRKAAVWDE------CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKI 193 (269)
T ss_pred ----cHHHHHHHHHHHHHhCCcch------hhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 00011334455665554211 111 2445678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCC---eEEEecCcccc
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSN---WKLEFIDQESL 782 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~---~~~~~~~~~~~ 782 (788)
.+.|++ .++|+|++||+++.+ ..||++++|++|+..++..+ +-.+.-+++.+
T Consensus 194 ~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 194 EETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251 (269)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence 998875 478999999998654 78999999999776554444 34444344433
No 153
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2e-39 Score=340.49 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=165.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--------- 70 (242)
T TIGR03411 2 ILYLEGLSVSFD--GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP--------- 70 (242)
T ss_pred eEEEEeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCC---------
Confidence 589999999996 357999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++|++|++.+|.+ |++||+.++..... .. .. .+.....
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~---------~~---------~~~~~~~ 117 (242)
T TIGR03411 71 -------------EHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK--SV---------FA---------SLFFRLS 117 (242)
T ss_pred -------------HHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc--cc---------cc---------ccccccH
Confidence 001123569999999999986 99999987522100 00 00 0000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.++++... ......||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 118 AEEKDRIEEVLETIGLADEA---------DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred HHHHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 01223566777777664322 334567999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++.+ ++||+|++|++|+.
T Consensus 189 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 189 LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220 (242)
T ss_pred HhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 478999999998876 57999999999875
No 154
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-39 Score=349.02 Aligned_cols=207 Identities=20% Similarity=0.334 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~--------- 69 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP---IT--------- 69 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE---CC---------
Confidence 4899999999963 3469999999999999999999999999999999999999999999996443 21
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..+....++.++||+|++ .+|+.|+.||+.++.......
T Consensus 70 -----------~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~---------------------------- 110 (277)
T PRK13652 70 -----------KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD---------------------------- 110 (277)
T ss_pred -----------cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC----------------------------
Confidence 001112346799999997 477889999998742110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ..+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~ 181 (277)
T PRK13652 111 EETVAHRVSSALHMLGLEELRD---------RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181 (277)
T ss_pred HHHHHHHHHHHHHHCCChhHhc---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001234566777777654332 2356799999999999999999999999999999999999999988886
Q ss_pred h---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ . |+|+|++||+++.+ +.||++++|++|+.
T Consensus 182 ~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216 (277)
T ss_pred HHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 4 3 89999999998876 78999999999875
No 155
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-40 Score=348.97 Aligned_cols=208 Identities=21% Similarity=0.285 Sum_probs=162.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ml~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 68 (271)
T PRK13638 1 MLATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS---------- 68 (271)
T ss_pred CeEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccc----------
Confidence 478999999996 35799999999999999999999999999999999999999999999965432100
Q ss_pred hhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.......++.|+||||++. ++..|+.+|+.++.... +. .
T Consensus 69 -----------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~------------~~----------------~ 109 (271)
T PRK13638 69 -----------KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL------------GV----------------P 109 (271)
T ss_pred -----------cCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc------------CC----------------C
Confidence 0011123567999999986 56678999997631100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 180 (271)
T PRK13638 110 EAEITRRVDEALTLVDAQHFRH---------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180 (271)
T ss_pred HHHHHHHHHHHHHHcCCHhHhc---------CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001134556677766643322 2356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 181 ~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214 (271)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 589999999998766 67999999999874
No 156
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=349.89 Aligned_cols=212 Identities=18% Similarity=0.261 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~------ 75 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTS------ 75 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc------
Confidence 388999999997422 46999999999999999999999999999999999999999999999654321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
........++.|+|+||++ .+|+.|++||+.++.......
T Consensus 76 -------------~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~------------------------- 117 (280)
T PRK13649 76 -------------KNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVS------------------------- 117 (280)
T ss_pred -------------cccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCC-------------------------
Confidence 0001113456799999998 678889999998642100000
Q ss_pred cCCCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++.. .. .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 118 ---~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (280)
T PRK13649 118 ---QEEAEALAREKLALVGISESLF---------EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185 (280)
T ss_pred ---HHHHHHHHHHHHHHcCCChhhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0001123455666666541 11 2345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ ..||++++|++|+.
T Consensus 186 ~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 186 TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223 (280)
T ss_pred HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEE
Confidence 98864 489999999998765 68999999999875
No 157
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-39 Score=351.00 Aligned_cols=212 Identities=19% Similarity=0.283 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------ 75 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPET------ 75 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 48899999999632 146999999999999999999999999999999999999999999999654321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
...+....++.++|++|++ .+|..|+.||+.++.......
T Consensus 76 -------------~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~------------------------- 117 (287)
T PRK13641 76 -------------GNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFS------------------------- 117 (287)
T ss_pred -------------ccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCC-------------------------
Confidence 0000112345799999998 577789999998642100000
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 118 ---~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~ 185 (287)
T PRK13641 118 ---EDEAKEKALKWLKKVGLSEDLI---------SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM 185 (287)
T ss_pred ---HHHHHHHHHHHHHHcCCChhHh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH
Confidence 000123456677777664 222 2346779999999999999999999999999999999999999998
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ +.||++++|++|+.
T Consensus 186 ~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 186 QLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223 (287)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 88864 589999999998765 68999999999874
No 158
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-39 Score=356.41 Aligned_cols=206 Identities=24% Similarity=0.310 Sum_probs=163.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 40 ~~i~i~nl~k~y~--~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--------- 108 (340)
T PRK13536 40 VAIDLAGVSKSYG--DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--------- 108 (340)
T ss_pred eeEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc---------
Confidence 3699999999996 45799999999999999999999999999999999999999999999965432110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
....++.|||+||++.++. .|+.||+.+..... +. .
T Consensus 109 ---------------~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~ 145 (340)
T PRK13536 109 ---------------ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF------------GM----------------S 145 (340)
T ss_pred ---------------hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc------------CC----------------C
Confidence 1134567999999999874 69999997521000 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 146 ~~~~~~~~~~ll~~~~L~~~~---------~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~ 216 (340)
T PRK13536 146 TREIEAVIPSLLEFARLESKA---------DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 216 (340)
T ss_pred HHHHHHHHHHHHHHcCCchhh---------CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 000112344566666654322 23456799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ ++||+|++|++|+.
T Consensus 217 ~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 217 SLLARGKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 5 589999999998765 68999999999975
No 159
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.5e-39 Score=342.95 Aligned_cols=215 Identities=25% Similarity=0.300 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 71 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR--------- 71 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc---------
Confidence 589999999996 357999999999999999999999999999999999999999999999644321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.... ...+....++.++||||++.+|. .|++||+.++..... +. ..
T Consensus 72 -----~~~~-~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----------~~----------------~~ 118 (250)
T PRK11264 72 -----SLSQ-QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-----------GE----------------PK 118 (250)
T ss_pred -----cccc-hhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc-----------CC----------------CH
Confidence 0000 00011234567999999999886 699999976421000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 119 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 119 EEATARARELLAKVGLAGKE---------TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred HHHHHHHHHHHHHcCCcchh---------hCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 00113455667776654322 234678999999999999999999999999999999999999999988764
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 190 ~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 190 LAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222 (250)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 589999999998765 67999999999864
No 160
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-39 Score=339.88 Aligned_cols=205 Identities=23% Similarity=0.342 Sum_probs=160.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--------- 73 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ--------- 73 (237)
T ss_pred EEEEEeEEEeeC--CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCC---------
Confidence 699999999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++|++|++.+|.. |++||+.++.......
T Consensus 74 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------- 111 (237)
T PRK11614 74 -------------TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD----------------------------- 111 (237)
T ss_pred -------------HHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh-----------------------------
Confidence 001234569999999999985 9999998753211000
Q ss_pred CCChHHHHHHHHhc-ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDV-KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~-~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+ ++. +........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 112 -~~~~~~~~~l~~~~~l~---------~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 181 (237)
T PRK11614 112 -QFQERIKWVYELFPRLH---------ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIE 181 (237)
T ss_pred -HHHHHHHHHHHHHHHHH---------HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 0011233334433 122 11233456799999999999999999999999999999999999999988876
Q ss_pred h---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++ ..++||++++|++|+.
T Consensus 182 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (237)
T PRK11614 182 QLREQGMTIFLVEQNANQALKLADRGYVLENGHV 215 (237)
T ss_pred HHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEE
Confidence 4 5899999999986 5678999999999864
No 161
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.5e-39 Score=336.61 Aligned_cols=211 Identities=27% Similarity=0.377 Sum_probs=164.8
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++||++.|++++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-------- 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS-------- 73 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcC--------
Confidence 78999999996422 56999999999999999999999999999999999999999999999644321110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.......++.++|+||++.+|. .|+.||+.++...... . .
T Consensus 74 ------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~-----------~----------------~ 114 (220)
T TIGR02982 74 ------------EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN-----------L----------------S 114 (220)
T ss_pred ------------HhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC-----------C----------------C
Confidence 0001123567999999999997 6999999864210000 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.++++...+ ..+.+||||||||++|||||+++|++|||||||++||+++.+.+.+.|+
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~ 185 (220)
T TIGR02982 115 YQEARERARAMLEAVGLGDHLD---------YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185 (220)
T ss_pred HHHHHHHHHHHHHHcCChhhhh---------cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 0001234566777776653322 3356799999999999999999999999999999999999999988885
Q ss_pred h----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++..++||+|++|++|+.
T Consensus 186 ~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 186 KLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 4 48999999999988889999999998853
No 162
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=343.01 Aligned_cols=210 Identities=25% Similarity=0.326 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 69 (255)
T PRK11231 2 TLRTENLTVGYG--TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML---------- 69 (255)
T ss_pred EEEEEeEEEEEC--CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC----------
Confidence 489999999996 45799999999999999999999999999999999999999999999964321111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|+||++.++.+ |+.||+.++...... . .+ ...
T Consensus 70 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~-----------~------------~~-~~~ 112 (255)
T PRK11231 70 -------------SSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLS-----------L------------WG-RLS 112 (255)
T ss_pred -------------CHHHHhhheEEecccCCCCCCccHHHHHHhccchhhh-----------h------------cc-CCC
Confidence 111234569999999998876 999999875321000 0 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... ...+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 113 AEDNARVNQAMEQTRINHLA---------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHH---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 01123456677777665322 234577999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 184 l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 216 (255)
T PRK11231 184 LNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216 (255)
T ss_pred HHHCCCEEEEEECCHHHHHHhcCEEEEEECCeE
Confidence 589999999998764 68999999999875
No 163
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-39 Score=347.76 Aligned_cols=209 Identities=20% Similarity=0.300 Sum_probs=166.0
Q ss_pred cEEEeeeEEEcCCC----CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKTPTS----KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y~~~----~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
+|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~------ 77 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDE------ 77 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccc------
Confidence 69999999999742 24699999999999999999999999999999999999999999999964332110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++.+||+||++. ++..|+.+|+.|+.......
T Consensus 78 ----------------~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~------------------------ 117 (280)
T PRK13633 78 ----------------ENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIP------------------------ 117 (280)
T ss_pred ----------------ccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCC------------------------
Confidence 011123567999999983 66679999998752110000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 118 ----~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~ 184 (280)
T PRK13633 118 ----PEEIRERVDESLKKVGMYEYRR---------HAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184 (280)
T ss_pred ----HHHHHHHHHHHHHHCCCHhHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0001234667778777754433 235679999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+..||++++|++|+.
T Consensus 185 ~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i 222 (280)
T PRK13633 185 NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKV 222 (280)
T ss_pred HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEE
Confidence 88864 38999999999987767999999999874
No 164
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.5e-36 Score=319.62 Aligned_cols=410 Identities=16% Similarity=0.198 Sum_probs=265.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHh
Q 040758 257 QRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRY 336 (788)
Q Consensus 257 ~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 336 (788)
.+++.|+..+. +.......+.+.++.+++.++.+++++++++++.++|+++.++...+...+..+.....++.+.++..
T Consensus 109 a~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~ 187 (546)
T COG4615 109 AGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQN 187 (546)
T ss_pred hhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 47889998887 23334455777777777888899999999999999998888777777777777766666777777777
Q ss_pred HHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHh---cCcccH
Q 040758 337 GLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT-SGYRYLIQILPAAVVAPMYF---SGKIEF 412 (788)
Q Consensus 337 ~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~---~G~it~ 412 (788)
......++.++.+... ++.+. .+.+.+....++.++... ..+.+. ....+...++..+++..+|. -+.-+.
T Consensus 188 ~y~~il~G~KEL~l~r-~R~~~-~h~~~~~~~a~~~r~~~~---~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st 262 (546)
T COG4615 188 DYQTILEGRKELTLNR-ERAEY-VHNNLYIPDAQEYRHHII---RANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWAST 262 (546)
T ss_pred HHHHHhcchhhheech-HHHHH-HHhhhcCcchHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 6677888888887654 32221 223333332222222111 111111 11111111111222222221 121111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCC
Q 040758 413 GVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSP 492 (788)
Q Consensus 413 G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (788)
.....++.....+-+++..++..+..+..+...++++.++.. +...+ . + ......+
T Consensus 263 ~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~--~~~~a-~----~-----------------~~~q~~p 318 (546)
T COG4615 263 NVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLEL--APYKA-D----F-----------------PRPQAFP 318 (546)
T ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhc--CCccc-c----C-----------------CCCCcCC
Confidence 111111111222334444455455555666667777765432 11100 0 0 0000011
Q ss_pred cCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 493 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 493 ~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.=..|+++||.|.|++ ...-+..||++|++||.+-|+|.|||||||++++|.|+|.|++|+|++||+ .+.
T Consensus 319 --~~~~lelrnvrfay~~-~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~---pV~---- 388 (546)
T COG4615 319 --DWKTLELRNVRFAYQD-NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK---PVS---- 388 (546)
T ss_pred --cccceeeeeeeeccCc-ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc---cCC----
Confidence 1236999999999985 335689999999999999999999999999999999999999999999654 331
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
..++++.|+-++-|+-|.+||+.++- +.
T Consensus 389 ----------------~e~ledYR~LfSavFsDyhLF~~ll~-----~e------------------------------- 416 (546)
T COG4615 389 ----------------AEQLEDYRKLFSAVFSDYHLFDQLLG-----PE------------------------------- 416 (546)
T ss_pred ----------------CCCHHHHHHHHHHHhhhHhhhHhhhC-----Cc-------------------------------
Confidence 11334556668889999999865431 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
..++.+.+...|+++.+.+.....+|--+ ..+||-|||+|+|+--|++-+.||++|||=-+--||.=++..++
T Consensus 417 ---~~as~q~i~~~LqrLel~~ktsl~d~~fs----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~ 489 (546)
T COG4615 417 ---GKASPQLIEKWLQRLELAHKTSLNDGRFS----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQ 489 (546)
T ss_pred ---cCCChHHHHHHHHHHHHhhhhcccCCccc----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHH
Confidence 01334455566666666544333222111 23599999999999999999999999999999999999999887
Q ss_pred HH----HhcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 733 QI----EAAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L----~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+ ++.|+|++.||||-.....|||++.+++|+.
T Consensus 490 ~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 490 VLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526 (546)
T ss_pred HHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCce
Confidence 54 5689999999999888888999999999974
No 165
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-39 Score=348.81 Aligned_cols=209 Identities=24% Similarity=0.314 Sum_probs=165.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEEeeccCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR---GKITFYVKDREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~---G~I~~~~~~~~~i~~~~~~ 573 (788)
.+|+++|++|+|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~------ 77 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK------ 77 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC------
Confidence 3699999999997434569999999999999999999999999999999999999998 8999964432110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+....++++||+||++ .+++.|+.||+.|+.......
T Consensus 78 -----------------~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~------------------------ 116 (282)
T PRK13640 78 -----------------TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVP------------------------ 116 (282)
T ss_pred -----------------CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCC------------------------
Confidence 1112346799999998 356789999998752110000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 117 ----~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~ 183 (282)
T PRK13640 117 ----RPEMIKIVRDVLADVGMLDYID---------SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183 (282)
T ss_pred ----HHHHHHHHHHHHHHCCChhHhc---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 0001134666777777654322 335679999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i 221 (282)
T PRK13640 184 KLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKL 221 (282)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 88864 38999999999987788999999999875
No 166
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-39 Score=345.43 Aligned_cols=208 Identities=20% Similarity=0.282 Sum_probs=164.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~---------- 76 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD---------- 76 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 6999999999974334699999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+....++.++|++|++. ++..|+++|+.++.......
T Consensus 77 -------------~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~---------------------------- 115 (269)
T PRK13648 77 -------------NFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP---------------------------- 115 (269)
T ss_pred -------------CHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC----------------------------
Confidence 11134567999999984 44568999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 186 (269)
T PRK13648 116 YDEMHRRVSEALKQVDMLERA---------DYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186 (269)
T ss_pred HHHHHHHHHHHHHHcCCchhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123455677777665332 23456799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+..||+|++|++|+.
T Consensus 187 ~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i 220 (269)
T PRK13648 187 KVKSEHNITIISITHDLSEAMEADHVIVMNKGTV 220 (269)
T ss_pred HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEE
Confidence 4 38999999999887767999999999875
No 167
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.9e-39 Score=355.05 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=165.2
Q ss_pred CcEEEeeeEEEcCCC-----------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCc
Q 040758 497 KLLDIEDLTLKTPTS-----------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE 565 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~-----------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~ 565 (788)
..|+++||+++|+.+ ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 369999999999631 246899999999999999999999999999999999999999999999655432
Q ss_pred ccccCCCccchhhhcccccccchhcccccCcceEEEEcccc--ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccch
Q 040758 566 ETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFL 642 (788)
Q Consensus 566 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i 642 (788)
++. .......++.|+||+|+| .++ ..|+.|||.++..... +
T Consensus 87 ~~~--------------------~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~--------------~-- 130 (331)
T PRK15079 87 GMK--------------------DDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH--------------P-- 130 (331)
T ss_pred cCC--------------------HHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc--------------c--
Confidence 221 011123456799999998 466 4699999976311000 0
Q ss_pred hhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040758 643 TSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722 (788)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaL 722 (788)
........+.+.+.++.+++.. +....++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 131 ----------~~~~~~~~~~~~~~l~~vgl~~--------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 131 ----------KLSRQEVKDRVKAMMLKVGLLP--------NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred ----------CCCHHHHHHHHHHHHHHcCCCh--------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 0000001234566777776631 0123456789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 723 DEANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 723 D~~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|+.+...+.+.|++ .|.|+|+|||+++.+ ..||+|++|.+|+.
T Consensus 193 D~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999988754 389999999999877 47999999999864
No 168
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=9e-40 Score=334.55 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=158.3
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+...+.
T Consensus 1 i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------------ 66 (206)
T TIGR03608 1 LKNISKKFG--DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN------------ 66 (206)
T ss_pred CcceEEEEC--CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc------------
Confidence 468999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred ccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
. .......++.++|++|++.+|. .|++||+.++...... .....
T Consensus 67 -----~--~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~----------------------------~~~~~ 111 (206)
T TIGR03608 67 -----S--KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKL----------------------------SKKEK 111 (206)
T ss_pred -----h--hhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCC----------------------------CHHHH
Confidence 0 0001123567999999999997 6999999763210000 00011
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.+++.++++.++++...+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 112 ~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 182 (206)
T TIGR03608 112 REKKKEALEKVGLNLKLK---------QKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND 182 (206)
T ss_pred HHHHHHHHHHcCchhhhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence 245667777777653322 33567999999999999999999999999999999999999999998865
Q ss_pred cCCEEEEEecCcchhhcCCEEEEE
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.|+|+|++||+++....||++++|
T Consensus 183 ~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 183 EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 489999999999888889999875
No 169
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-39 Score=343.71 Aligned_cols=210 Identities=25% Similarity=0.346 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 11 ~l~i~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 78 (265)
T PRK10575 11 TFALRNVSFRVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW---------- 78 (265)
T ss_pred eEEEeeEEEEEC--CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC----------
Confidence 699999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|++|++.++.. |+.||+.++..... +. .. ...
T Consensus 79 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----------~~------------~~-~~~ 121 (265)
T PRK10575 79 -------------SSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH-----------GA------------LG-RFG 121 (265)
T ss_pred -------------CHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc-----------cc------------cc-CCC
Confidence 111235679999999877654 99999987532100 00 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 122 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 122 AADREKVEEAISLVGLKPLAH---------RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred HHHHHHHHHHHHHcCCHHHhc---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 011235667777777654322 23567999999999999999999999999999999999999999888854
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ +.||+|++|++|+.
T Consensus 193 l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 193 LSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226 (265)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 389999999998765 68999999999875
No 170
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-39 Score=348.38 Aligned_cols=206 Identities=26% Similarity=0.384 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|+. ++.+|+||||+|++||++||+||||||||||+|+|+|+..|++|+|.++|.+ ..
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~---~~--------- 70 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD---VV--------- 70 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe---Cc---------
Confidence 4789999999962 4689999999999999999999999999999999999999999999996443 21
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+++|||+||++.++.. |++||+.|-... .+ ...
T Consensus 71 ------------~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l------------~~----------------~~~ 110 (293)
T COG1131 71 ------------KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL------------YG----------------LSK 110 (293)
T ss_pred ------------cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH------------hC----------------CCh
Confidence 0012346779999999998865 999999762110 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... .....+||+|||||++||+||+++|++|||||||++||+.+...+.+.|++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~---------~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 111 EEAEERIEELLELFGLEDKA---------NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred hHHHHHHHHHHHHcCCchhh---------CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 11245688889988876421 234567999999999999999999999999999999999999999998864
Q ss_pred ---cC-CEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AG-ITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g-~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.| +||+++||.++.+ ..||+|++|++|+.
T Consensus 182 l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~ 215 (293)
T COG1131 182 LAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215 (293)
T ss_pred HHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEE
Confidence 45 8999999998654 56999999999975
No 171
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-39 Score=341.44 Aligned_cols=198 Identities=24% Similarity=0.301 Sum_probs=159.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ml~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~--------- 66 (255)
T PRK11248 1 MLQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK---PVE--------- 66 (255)
T ss_pred CEEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE---ECC---------
Confidence 378999999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+..++|++|++.+|. .|++||+.++.... +.. .
T Consensus 67 ----------------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~~----------------~ 102 (255)
T PRK11248 67 ----------------GPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA------------GVE----------------K 102 (255)
T ss_pred ----------------CCCCcEEEEeCCCccCCCCcHHHHHHhHHHHc------------CCC----------------H
Confidence 01234899999999887 59999997642100 000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAE---------KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173 (255)
T ss_pred HHHHHHHHHHHHHcCChhHh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 00123466777777665332 234567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
.|+|+|+|||+++.+ ..||++++|++
T Consensus 174 ~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 174 LWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 389999999998765 67999999985
No 172
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2e-39 Score=337.84 Aligned_cols=203 Identities=23% Similarity=0.305 Sum_probs=157.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP---------- 68 (230)
T ss_pred CEEEeEEEEeC--CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC----------
Confidence 47899999996 357999999999999999999999999999999999999999999999643321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.. |++||+.++......
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~------------------------------- 105 (230)
T TIGR03410 69 ------------PHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR------------------------------- 105 (230)
T ss_pred ------------HHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc-------------------------------
Confidence 001124569999999999976 999999764211000
Q ss_pred CChHHHHHHHHhcc-cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDVK-LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~-l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+...+.++.++ +... ......+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 106 ~~~~~~~~~l~~~~~l~~~---------~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 106 RSRKIPDEIYELFPVLKEM---------LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred chHHHHHHHHHHHHhHHHH---------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 00111233333332 1111 2345667999999999999999999999999999999999999999998864
Q ss_pred ----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+. .||++++|++|+.
T Consensus 177 ~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 177 LRAEGGMAILLVEQYLDFARELADRYYVMERGRV 210 (230)
T ss_pred HHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3899999999987664 7999999999864
No 173
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-39 Score=343.90 Aligned_cols=216 Identities=25% Similarity=0.270 Sum_probs=167.0
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 17 ~~~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~-- 92 (267)
T PRK14235 17 EIKMRARDVSVFYG--EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR-- 92 (267)
T ss_pred CceEEEEeEEEEEC--CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc--
Confidence 45799999999996 35799999999999999999999999999999999999975 8999999644321100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....+++.++|++|++.+|..|+.||+.++...... .
T Consensus 93 -------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~------------~----------- 130 (267)
T PRK14235 93 -------------------LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGL------------A----------- 130 (267)
T ss_pred -------------------cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhccc------------c-----------
Confidence 0111345679999999999988999999874210000 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.......+++.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 131 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14235 131 ---RSKAELDEIVETSLRKAGLWEEVK-----DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202 (267)
T ss_pred ---cchHHHHHHHHHHHHHcCCchhhh-----HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 000001234566777776642111 012344678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 203 ~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 203 EELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240 (267)
T ss_pred HHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 998875 478999999998766 67999999999865
No 174
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-39 Score=346.54 Aligned_cols=208 Identities=23% Similarity=0.324 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 498 LLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
.|+++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~--------- 74 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE--------- 74 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC---------
Confidence 58999999999742 24589999999999999999999999999999999999999999999964432111
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.+||++|++ .++..|+.|||.++.......
T Consensus 75 --------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~--------------------------- 113 (277)
T PRK13642 75 --------------NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP--------------------------- 113 (277)
T ss_pred --------------CHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC---------------------------
Confidence 1112356799999998 366789999998742110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.+.++++.+++....+ ..+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l 183 (277)
T PRK13642 114 -REEMIKRVDEALLAVNMLDFKT---------REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183 (277)
T ss_pred -HHHHHHHHHHHHHHCCCHhHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0000134556677766654322 235679999999999999999999999999999999999999999888
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++.+..||+|++|++|+.
T Consensus 184 ~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i 218 (277)
T PRK13642 184 HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEI 218 (277)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 63 38999999999988778999999999874
No 175
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-39 Score=339.00 Aligned_cols=208 Identities=24% Similarity=0.335 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 71 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP--------- 71 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 589999999996 357999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++|+||++.+|. .|+.||+.+....... . ..
T Consensus 72 -------------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-----------~----------------~~ 111 (241)
T PRK10895 72 -------------LHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDD-----------L----------------SA 111 (241)
T ss_pred -------------HHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccc-----------c----------------CH
Confidence 01123457999999999887 4999999764210000 0 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
......+.+.++.+++... .......||||||||++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 112 ~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 112 EQREDRANELMEEFHIEHL---------RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred HHHHHHHHHHHHHcCCHHH---------hhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0012345556666655422 1334567999999999999999999999999999999999999988877753
Q ss_pred ---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++ ..+.||++++|++|+.
T Consensus 183 ~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHL 215 (241)
T ss_pred HHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeE
Confidence 5899999999985 5578999999999875
No 176
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=1.4e-39 Score=358.62 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=156.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..... ...
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~--------------------~~~ 64 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS--------------------PVE 64 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCC--------------------HHH
Confidence 457999999999999999999999999999999999999999999999654332211 000
Q ss_pred cc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHh
Q 040758 592 MN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED 669 (788)
Q Consensus 592 ~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (788)
.. ..+++|+||+|++.+|+ .|++|||.|+.... +. ......+.+.++++.
T Consensus 65 ~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~------------~~----------------~~~~~~~~~~~~l~~ 116 (363)
T TIGR01186 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL------------GW----------------PEQERKEKALELLKL 116 (363)
T ss_pred HHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc------------CC----------------CHHHHHHHHHHHHHh
Confidence 00 11567999999999997 59999998752110 00 000112456778888
Q ss_pred cccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEe
Q 040758 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVG 745 (788)
Q Consensus 670 ~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~Ia 745 (788)
++++.+. ...+.+|||||||||+|||||+.+|++||||||||+||+.+...+++.+.+ .|+|+|+||
T Consensus 117 vgL~~~~---------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vT 187 (363)
T TIGR01186 117 VGLEEYE---------HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187 (363)
T ss_pred cCCchhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7775433 345678999999999999999999999999999999999999999998753 389999999
Q ss_pred cCcch-hhcCCEEEEEccCCC
Q 040758 746 HRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 746 Hr~~~-~~~~D~Ilvl~~g~~ 765 (788)
|+++. .+.||+|++|++|+.
T Consensus 188 Hd~~ea~~~~drI~vl~~G~i 208 (363)
T TIGR01186 188 HDLDEAIRIGDRIVIMKAGEI 208 (363)
T ss_pred CCHHHHHHhCCEEEEEeCCEE
Confidence 99875 688999999999875
No 177
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=340.94 Aligned_cols=222 Identities=22% Similarity=0.323 Sum_probs=165.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--------- 73 (255)
T PRK11300 5 LLSVSGLMMRFG--GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP--------- 73 (255)
T ss_pred eEEEeeEEEEEC--CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+..++|+||++.+|.. |++||+.++.......... .+.... . ... ...
T Consensus 74 -------------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~----~---~~~-~~~ 127 (255)
T PRK11300 74 -------------GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLF-----SGLLKT----P---AFR-RAE 127 (255)
T ss_pred -------------HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhh-----hhhccc----c---ccc-cch
Confidence 001123469999999999985 9999999853211000000 000000 0 000 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 128 SEALDRAATWLERVGLLEHA---------NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198 (255)
T ss_pred hHHHHHHHHHHHhCChhhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 01123455667766654322 345678999999999999999999999999999999999999999988853
Q ss_pred ---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ |+|+|++||+++.+ +.||++++|++|+.
T Consensus 199 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 199 LRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP 232 (255)
T ss_pred HHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 3 89999999998765 67999999999875
No 178
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-39 Score=339.28 Aligned_cols=212 Identities=26% Similarity=0.260 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----- 75 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM----- 75 (250)
T ss_pred eEEEEeeEEEEC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC-----
Confidence 489999999996 35799999999999999999999999999999999999974 799999965432111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+...+++.|+|+||++.+| ..|++||+.++.......
T Consensus 76 ------------------~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~------------------------ 113 (250)
T PRK14247 76 ------------------DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV------------------------ 113 (250)
T ss_pred ------------------CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc------------------------
Confidence 1113456799999999765 579999998742100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+++.++++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 114 --~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~ 186 (250)
T PRK14247 114 --KSKKELQERVRWALEKAQLWDEVK-----DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE 186 (250)
T ss_pred --CCHHHHHHHHHHHHHHcCCCcchh-----hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 000001245667778777643211 0113445779999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 187 ~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14247 187 SLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223 (250)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeE
Confidence 98875 589999999998865 68999999999875
No 179
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-39 Score=348.58 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=163.1
Q ss_pred CcEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----- 79 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANL----- 79 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccc-----
Confidence 5699999999996422 25999999999999999999999999999999999999999999999644311000
Q ss_pred cchhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
. ...+...+++.|+|++|++ .+|..|++||+.++.......
T Consensus 80 --------~-----~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~------------------------ 122 (289)
T PRK13645 80 --------K-----KIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN------------------------ 122 (289)
T ss_pred --------c-----ccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCC------------------------
Confidence 0 0001123456799999998 467789999998742100000
Q ss_pred ccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.....+.+.+.++.+++. .. ....+.+||||||||++|||||+.+|++|||||||++||+.+.+.+
T Consensus 123 ----~~~~~~~~~~ll~~~~L~~~~---------~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l 189 (289)
T PRK13645 123 ----KQEAYKKVPELLKLVQLPEDY---------VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF 189 (289)
T ss_pred ----HHHHHHHHHHHHHHcCCChhH---------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 000112344566666552 11 1344678999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|+|||+++. .++||++++|++|+.
T Consensus 190 ~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 190 INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229 (289)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 888754 38999999999875 478999999999875
No 180
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3e-39 Score=343.92 Aligned_cols=212 Identities=28% Similarity=0.362 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCC-------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTS-------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-- 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD-- 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccC--
Confidence 48999999999631 357999999999999999999999999999999999999999999999654322110
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccc--cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.......++.|+|+||++. ++ ..|++||+.++.... .+.
T Consensus 80 ------------------~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-----------~~~--------- 121 (265)
T TIGR02769 80 ------------------RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL-----------TSL--------- 121 (265)
T ss_pred ------------------HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh-----------cCC---------
Confidence 0011123567999999973 44 369999996531000 000
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
......+++.++++.+++. ... ...+..||||||||++|||||+.+|++|||||||++||+.+
T Consensus 122 -------~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~ 185 (265)
T TIGR02769 122 -------DESEQKARIAELLDMVGLRSEDA---------DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL 185 (265)
T ss_pred -------CHHHHHHHHHHHHHHcCCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 0001124566777777663 221 23456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+..+.+.|++ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 186 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 186 QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229 (265)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE
Confidence 9999988864 389999999998776 57999999999864
No 181
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-39 Score=346.28 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=164.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~---------- 69 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD---------- 69 (275)
T ss_pred CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccc----------
Confidence 3789999999963 45699999999999999999999999999999999999999999999965432100
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..+...+++.|+|+||++ .+|+.|+.||+.++...... .
T Consensus 70 -----------~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~----------------------------~ 110 (275)
T PRK13639 70 -----------KKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL----------------------------S 110 (275)
T ss_pred -----------cchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCC----------------------------C
Confidence 001112356799999997 57788999999764210000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.
T Consensus 111 ~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 111 KEEVEKRVKEALKAVGMEGFEN---------KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181 (275)
T ss_pred HHHHHHHHHHHHHHCCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 0001234567777777653322 3356799999999999999999999999999999999999999998886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 182 ~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i 215 (275)
T PRK13639 182 DLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215 (275)
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 489999999998765 58999999999864
No 182
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-39 Score=339.03 Aligned_cols=213 Identities=27% Similarity=0.328 Sum_probs=163.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~~------- 69 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH---FDFS------- 69 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe---cccc-------
Confidence 488999999996 3579999999999999999999999999999999999999999999996543 2100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...........+++++|+||++.+|.. |+.||+.+..... .+. ..
T Consensus 70 -------~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~-----------~~~----------------~~ 115 (242)
T PRK11124 70 -------KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRV-----------LGL----------------SK 115 (242)
T ss_pred -------cccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHH-----------cCC----------------CH
Confidence 000000111335679999999999975 9999997521100 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.++++... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|++
T Consensus 116 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 116 DQALARAEKLLERLRLKPYA---------DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 00123455667766664322 233567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+.. ..||++++|++|+.
T Consensus 187 ~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 187 LAETGITQVIVTHEVEVARKTASRVVYMENGHI 219 (242)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 589999999998776 57999999999874
No 183
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=341.54 Aligned_cols=222 Identities=21% Similarity=0.266 Sum_probs=166.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+........
T Consensus 4 ~~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~----- 76 (257)
T PRK10619 4 NKLNVIDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD----- 76 (257)
T ss_pred ccEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccc-----
Confidence 4699999999996 457999999999999999999999999999999999999999999999654321100000
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..............++.++|+||++.+|. .|++||+.++.... .+. .
T Consensus 77 -----~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~-----------~~~----------------~ 124 (257)
T PRK10619 77 -----GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-----------LGL----------------S 124 (257)
T ss_pred -----cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh-----------CCC----------------C
Confidence 00000000001133567999999999997 49999997642100 000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.+.++.+++.... ......+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+
T Consensus 125 ~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 196 (257)
T PRK10619 125 KQEARERAVKYLAKVGIDERA--------QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQ 196 (257)
T ss_pred HHHHHHHHHHHHHHcCCChhh--------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123456677777665321 023456799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+. +||+|++|++|+.
T Consensus 197 ~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 197 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 4 5899999999988765 7999999999875
No 184
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-39 Score=340.75 Aligned_cols=206 Identities=28% Similarity=0.379 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~---------- 69 (258)
T PRK13548 2 MLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW---------- 69 (258)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|++|++.+ +..|++||+.++...... ..
T Consensus 70 -------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------------------------~~ 108 (258)
T PRK13548 70 -------------SPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL----------------------------SR 108 (258)
T ss_pred -------------CHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC----------------------------Cc
Confidence 111234569999999988 567999999875211000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL------SKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl------~~p~iLiLDEpTSaLD~~se~~i 730 (788)
....+.+.++++.+++.... .....+||||||||++|||||+ .+|++|||||||++||+.+...+
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l 179 (258)
T PRK13548 109 AEDDALVAAALAQVDLAHLA---------GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179 (258)
T ss_pred HHHHHHHHHHHHHcCCHhHh---------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHH
Confidence 01123456677777664322 2345679999999999999999 59999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|++||+++.+ ++||+|++|++|+.
T Consensus 180 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 180 LRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE
Confidence 888753 489999999998765 58999999999874
No 185
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-39 Score=342.10 Aligned_cols=215 Identities=24% Similarity=0.274 Sum_probs=166.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
...|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 18 ~~~l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~--- 92 (267)
T PRK14237 18 EIALSTKDLHVYYG--KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK--- 92 (267)
T ss_pred CeEEEEeeEEEEEC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc---
Confidence 34799999999995 4679999999999999999999999999999999999997 5899999964332100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.......++.|+|+||++.+|..|++||+.++..... .
T Consensus 93 ------------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~------------~------------ 130 (267)
T PRK14237 93 ------------------EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAG------------V------------ 130 (267)
T ss_pred ------------------cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcC------------C------------
Confidence 0011133567999999999999999999987521100 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......++.+.++++.+++..... +..+..+.+||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 131 ---~~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14237 131 ---KDKKVLDEIVETSLKQAALWDQVK-----DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL 202 (267)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCchhh-----hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 000001234556677766542111 112455678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .+.|+|+|||+++.+ ++||++++|++|+.
T Consensus 203 ~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 203 EETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 998875 579999999998765 78999999999875
No 186
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-39 Score=342.24 Aligned_cols=214 Identities=24% Similarity=0.293 Sum_probs=163.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 20 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 93 (268)
T PRK14248 20 HILEVKDLSIYYG--EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS---- 93 (268)
T ss_pred ceEEEEEEEEEeC--CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc----
Confidence 4699999999996 4579999999999999999999999999999999999865 7999999964332110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|++|++.+|+.|+.||+.++.......
T Consensus 94 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~------------------------ 132 (268)
T PRK14248 94 -----------------NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGER------------------------ 132 (268)
T ss_pred -----------------cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCC------------------------
Confidence 001113356799999999999999999998642100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....++.+.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 133 ---~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 204 (268)
T PRK14248 133 ---RKSVLDEIVEESLTKAALWDEVK-----DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE 204 (268)
T ss_pred ---cHHHHHHHHHHHHHHcCCCcchH-----HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHH
Confidence 00001123455566655431100 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++. .+.||++++|++|+.
T Consensus 205 ~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 241 (268)
T PRK14248 205 ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241 (268)
T ss_pred HHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEE
Confidence 98875 47899999999875 468999999999864
No 187
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-39 Score=321.26 Aligned_cols=172 Identities=30% Similarity=0.421 Sum_probs=146.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 i~~~~l~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (178)
T cd03229 1 LELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE---------- 68 (178)
T ss_pred CEEEEEEEEEC--CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc----------
Confidence 47899999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .....++.++|++|++.+|. .|++||+.+.
T Consensus 69 ----------~-~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------- 100 (178)
T cd03229 69 ----------D-ELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------- 100 (178)
T ss_pred ----------h-hHHHHhhcEEEEecCCccCCCCCHHHheeec-------------------------------------
Confidence 0 01133567999999998885 4888887430
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 101 ----------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 101 ----------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSL 146 (178)
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988864
Q ss_pred --c-CCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 737 --A-GITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
+ |+|+|++||+.+.+. .||++++|++|+
T Consensus 147 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 147 QAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 3 799999999987765 799999999874
No 188
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.1e-40 Score=319.74 Aligned_cols=206 Identities=27% Similarity=0.308 Sum_probs=165.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
++++++++++|++ ...+++|+||+++.||++||.|||||||||++++|+.++.|++|+|.+||.|...
T Consensus 1 Ml~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~----------- 68 (245)
T COG4555 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR----------- 68 (245)
T ss_pred CeeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-----------
Confidence 4789999999974 4458999999999999999999999999999999999999999999997554321
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....|++||+++-+..++.. |.+|||.|-..-..+ ..
T Consensus 69 -------------~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l----------------------------~~ 107 (245)
T COG4555 69 -------------DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL----------------------------SR 107 (245)
T ss_pred -------------ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh----------------------------hh
Confidence 123467889999988888875 999999873110000 01
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+..+.+++.... +.+..+||-|+||||+|||||++||++++||||||+||..+.+.+.+.+.+
T Consensus 108 ~~~kari~~l~k~l~l~~~~---------~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 108 KEIKARIAELSKRLQLLEYL---------DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred hHHHHHHHHHHHHhChHHHH---------HHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence 11223455555555554332 345667999999999999999999999999999999999999999887754
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+++|+.||.++.+ +.||++++|++|..
T Consensus 179 ~k~egr~viFSSH~m~EvealCDrvivlh~Gev 211 (245)
T COG4555 179 LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211 (245)
T ss_pred hhcCCcEEEEecccHHHHHHhhheEEEEecCcE
Confidence 699999999998655 59999999999974
No 189
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-39 Score=342.07 Aligned_cols=213 Identities=25% Similarity=0.265 Sum_probs=164.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 11 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 84 (258)
T PRK14268 11 PQIKVENLNLWYG--EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP---- 84 (258)
T ss_pred eeEEEeeeEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc----
Confidence 3699999999996 45799999999999999999999999999999999999985 799999964321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|++|++.+|..|++||+.++.... +..
T Consensus 85 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~------------~~~------------ 123 (258)
T PRK14268 85 -----------------DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH------------GAN------------ 123 (258)
T ss_pred -----------------cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHc------------CCC------------
Confidence 000112356799999999999999999997641100 000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++..... +........||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 124 ----~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 194 (258)
T PRK14268 124 ----KKDLDGVVENALRSAALWDETS-----DRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIE 194 (258)
T ss_pred ----HHHHHHHHHHHHHHcCCCcchh-----hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH
Confidence 0001124556677666532110 1113456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ++||++++|++|+.
T Consensus 195 ~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 231 (258)
T PRK14268 195 DLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGEL 231 (258)
T ss_pred HHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999998765 67999999999875
No 190
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=6.4e-39 Score=339.62 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=164.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 68 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL----------- 68 (256)
T ss_pred ceEEeEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC-----------
Confidence 78999999996 45799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.++ ..|++||+.++..... .. .. ....
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~---------------------~~-~~~~ 112 (256)
T TIGR03873 69 ------------SRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHR--SL---------------------WA-GDSP 112 (256)
T ss_pred ------------CHHHHhhheEEecccCccCCCCCHHHHHHhcchhhh--hh---------------------cc-CCCH
Confidence 1112345699999998654 5799999987532100 00 00 0000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... ...+..||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 113 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 113 HDAAVVDRALARTELSHLA---------DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred HHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 1123566777777665332 234567999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||+|++|++|+.
T Consensus 184 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (256)
T TIGR03873 184 AATGVTVVAALHDLNLAASYCDHVVVLDGGRV 215 (256)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCE
Confidence 489999999998876 68999999999875
No 191
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=5.7e-39 Score=321.60 Aligned_cols=172 Identities=33% Similarity=0.450 Sum_probs=149.2
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~---~~~---------- 67 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV---PVS---------- 67 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCE---EHH----------
Confidence 4789999999743347999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
.. ....++.++|++|++.+|+.|++||+ +
T Consensus 68 ----------~~-~~~~~~~i~~~~q~~~~~~~tv~~~i--~-------------------------------------- 96 (178)
T cd03247 68 ----------DL-EKALSSLISVLNQRPYLFDTTLRNNL--G-------------------------------------- 96 (178)
T ss_pred ----------HH-HHHHHhhEEEEccCCeeecccHHHhh--c--------------------------------------
Confidence 00 11235679999999999988999887 0
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..||||||||++||||++++|++|||||||++||+.+.+.+.+.|++
T Consensus 97 -------------------------------~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 97 -------------------------------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred -------------------------------ccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 12999999999999999999999999999999999999999998875
Q ss_pred cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++|+|++||+.+.+..||++++|++|+.
T Consensus 146 ~~~tii~~sh~~~~~~~~d~~~~l~~g~i 174 (178)
T cd03247 146 KDKTLIWITHHLTGIEHMDKILFLENGKI 174 (178)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 58999999999988888999999998863
No 192
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=5.2e-39 Score=334.02 Aligned_cols=207 Identities=27% Similarity=0.367 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCCc
Q 040758 499 LDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 499 I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
+.++||+++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|. ++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~---~~~----- 75 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ---PRK----- 75 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCE---ECC-----
Confidence 6799999999864 2679999999999999999999999999999999999999 99999999543 221
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
....++.++|+||++.+|.+ |++||+.++.........
T Consensus 76 ------------------~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~----------------------- 114 (226)
T cd03234 76 ------------------PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS----------------------- 114 (226)
T ss_pred ------------------hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc-----------------------
Confidence 01345679999999999986 999999864211000000
Q ss_pred cCCCCCChHHHHH-HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~-~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
..........+ .++.+++.... ......||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 115 --~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~ 183 (226)
T cd03234 115 --SDAIRKKRVEDVLLRDLALTRIG---------GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183 (226)
T ss_pred --chHHHHHHHHHHHHHhhcchhhh---------cccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHH
Confidence 00000011222 45554443221 2345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
+.+++ .|+|+|++||+. ++.+.||++++|++|+.
T Consensus 184 ~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 222 (226)
T cd03234 184 STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222 (226)
T ss_pred HHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence 98864 589999999997 46789999999999864
No 193
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.6e-39 Score=339.90 Aligned_cols=217 Identities=23% Similarity=0.273 Sum_probs=163.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---------- 68 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP---------- 68 (252)
T ss_pred CEEEEEEEEeC--CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc----------
Confidence 47899999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccc--cchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 579 VNSQNMN--GELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+++-. ..........++.++|++|++.+|. .|+.||+.++.... .+. .
T Consensus 69 --~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~-----------~~~----------------~ 119 (252)
T TIGR03005 69 --GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV-----------LGM----------------A 119 (252)
T ss_pred --cccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh-----------cCC----------------C
Confidence 00000 0000011133567999999999885 79999998742100 000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.+.++.+++.... ...+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 120 ~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 190 (252)
T TIGR03005 120 RAEAEKRAMELLDMVGLADKA---------DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190 (252)
T ss_pred HHHHHHHHHHHHHHcCChhHh---------hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123456677776664332 23456799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 191 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred HHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 4 389999999998765 68999999999875
No 194
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-39 Score=337.75 Aligned_cols=214 Identities=26% Similarity=0.266 Sum_probs=164.0
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.....
T Consensus 3 ~~l~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~--- 77 (252)
T PRK14256 3 NKVKLEQLNVHFG--KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG--- 77 (252)
T ss_pred cEEEEEEEEEEeC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc---
Confidence 4699999999996 3579999999999999999999999999999999999986 4 6899999654321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
......++.++|+||++.+|. .|++||+.++......
T Consensus 78 ------------------~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~------------------------ 115 (252)
T PRK14256 78 ------------------VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR------------------------ 115 (252)
T ss_pred ------------------CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCC------------------------
Confidence 011134567999999999997 5999999764210000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......++.+.++++.+++..... +..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 116 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l 187 (252)
T PRK14256 116 ---VNRSEADEIVESSLKRVALWDEVK-----DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI 187 (252)
T ss_pred ---CCHHHHHHHHHHHHHHcCCchhhh-----HHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 000001133556666666542111 011334678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ ++||++++|++|+.
T Consensus 188 ~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 188 EELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred HHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 998875 478999999998765 78999999999875
No 195
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.2e-39 Score=329.19 Aligned_cols=201 Identities=24% Similarity=0.319 Sum_probs=160.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~---------- 63 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS---HT---------- 63 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE---cc----------
Confidence 468999999952 4689999999999999999999999999999999999999999996433 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++||+|++.+|.. |+.||+.++...... ...
T Consensus 64 ------------~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~----------------------------~~~ 103 (213)
T TIGR01277 64 ------------GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK----------------------------LNA 103 (213)
T ss_pred ------------cCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC----------------------------ccH
Confidence 001234679999999999974 999999764210000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
....++.++++.+++....+ ....+||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 104 EQQEKVVDAAQQVGIADYLD---------RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL 174 (213)
T ss_pred HHHHHHHHHHHHcCcHHHhh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 11235566778777654332 23567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+.+.+ ..||++++|++|+.
T Consensus 175 ~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 175 CSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207 (213)
T ss_pred HHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeE
Confidence 389999999998765 67999999998864
No 196
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=336.71 Aligned_cols=213 Identities=22% Similarity=0.253 Sum_probs=163.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+..+..
T Consensus 4 ~l~~~~l~~~~~--~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---- 77 (251)
T PRK14249 4 KIKIRGVNFFYH--KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN---- 77 (251)
T ss_pred eEEEEEEEEEEC--CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc----
Confidence 589999999996 357999999999999999999999999999999999999997 699999644321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+++.++||||++.+|+.|++||+.++.......
T Consensus 78 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~------------------------- 115 (251)
T PRK14249 78 -----------------LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTT------------------------- 115 (251)
T ss_pred -----------------cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCC-------------------------
Confidence 01123467799999999999999999998752100000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 116 --~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 188 (251)
T PRK14249 116 --AQSRLDEVVEKSLRQAALWDEVK-----DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCchhhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 00001123444455555432111 11234567899999999999999999999999999999999999999998
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 189 ~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 189 LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224 (251)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeE
Confidence 8865 589999999998765 67899999999875
No 197
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=6.3e-39 Score=347.40 Aligned_cols=205 Identities=20% Similarity=0.273 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~---~~~--------- 67 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGE---DVL--------- 67 (301)
T ss_pred EEEEEEEEEEEC--CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---Ecc---------
Confidence 388999999996 467999999999999999999999999999999999999999999999643 331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. .....++.+||+||++.+|.. |+.||+.+.... .+. ..
T Consensus 68 --------~----~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~------------~~~----------------~~ 107 (301)
T TIGR03522 68 --------Q----NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI------------YGM----------------KG 107 (301)
T ss_pred --------c----ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH------------cCC----------------CH
Confidence 0 011335679999999999975 999999763100 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... +.....||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~ 178 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPEQ---------HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178 (301)
T ss_pred HHHHHHHHHHHHHCCCchHh---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00123456677777665432 234567999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++. .+.||||++|++|+.
T Consensus 179 ~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 179 IGKDKTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred hcCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999875 578999999999975
No 198
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-39 Score=337.71 Aligned_cols=214 Identities=25% Similarity=0.294 Sum_probs=163.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+..+.
T Consensus 2 ~~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~---- 75 (250)
T PRK14240 2 GKISVKDLDLFYG--DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS---- 75 (250)
T ss_pred CeEEEEEEEEEEC--CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc----
Confidence 3699999999996 35799999999999999999999999999999999999863 699999964432110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
..+....++.++|++|++.+|+.|+.||+.++.... +..+
T Consensus 76 -----------------~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~------------~~~~----------- 115 (250)
T PRK14240 76 -----------------DIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTH------------GIKD----------- 115 (250)
T ss_pred -----------------ccchHHHhccEEEEecCCccCcccHHHHHHHHHHhc------------CCCC-----------
Confidence 001113456799999999999999999998742100 0000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++...+. +..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 ----~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 186 (250)
T PRK14240 116 ----KKKLDEIVEKSLKGAALWDEVK-----DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186 (250)
T ss_pred ----HHHHHHHHHHHHHHcCCchhhH-----HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 0001233445566555431110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 187 ~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 187 ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred HHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEE
Confidence 98875 579999999998754 67999999999875
No 199
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-39 Score=344.37 Aligned_cols=207 Identities=25% Similarity=0.303 Sum_probs=161.3
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
.++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 26 ~~~~~~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~----------- 92 (269)
T cd03294 26 SKEEILKKTG--QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS----------- 92 (269)
T ss_pred hhhhhhhhcC--CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccC-----------
Confidence 5778999995 467999999999999999999999999999999999999999999999654322110
Q ss_pred cccccccchhcccc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 580 NSQNMNGELTRSMN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 580 ~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
..... ..+++++|+||++.+|. .|++||+.++.... +. ...
T Consensus 93 ---------~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~~ 135 (269)
T cd03294 93 ---------RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ------------GV----------------PRA 135 (269)
T ss_pred ---------hhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc------------CC----------------CHH
Confidence 00000 12356999999999985 69999997641100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++....+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.+
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 136 EREERAAEALELVGLEGWEH---------KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred HHHHHHHHHHHHcCCHhHhh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 01234566777777654322 33567999999999999999999999999999999999999999998754
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .+.||++++|++|+.
T Consensus 207 ~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i 239 (269)
T cd03294 207 QAELQKTIVFITHDLDEALRLGDRIAIMKDGRL 239 (269)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 38999999999876 478999999999864
No 200
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=317.76 Aligned_cols=167 Identities=29% Similarity=0.492 Sum_probs=144.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~---~~---------- 65 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKD---IK---------- 65 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE---cc----------
Confidence 468999999963 469999999999999999999999999999999999999999999996432 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .+ ...++.++|++|++.+|.+ |++||+.
T Consensus 66 -------~---~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------- 95 (173)
T cd03230 66 -------K---EP-EEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------- 95 (173)
T ss_pred -------c---ch-HhhhccEEEEecCCccccCCcHHHHhh---------------------------------------
Confidence 0 01 1335679999999988865 7777651
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 96 ----------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 96 ----------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
+|.|+|++||+.+.+. .||++++|++|+
T Consensus 142 ~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 142 KKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 4799999999987654 899999999885
No 201
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.4e-39 Score=349.96 Aligned_cols=213 Identities=23% Similarity=0.333 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCC--------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccccc
Q 040758 498 LLDIEDLTLKTPTS--------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA 569 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~ 569 (788)
.|+++||++.|+.. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~- 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD- 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC-
Confidence 59999999999631 246899999999999999999999999999999999999999999999654322211
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
....+..|+.|+||||+|. |+. .|+.+|+..+..... +
T Consensus 84 -------------------~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~-----------~--------- 124 (327)
T PRK11308 84 -------------------PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-----------S--------- 124 (327)
T ss_pred -------------------HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc-----------C---------
Confidence 0111234567999999984 554 488888754210000 0
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
.......+.+.++++.+++... . ...++.+||||||||++|||||+.+|++||+||||++||..+
T Consensus 125 -------~~~~~~~~~~~~~l~~~gL~~~-----~---~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~ 189 (327)
T PRK11308 125 -------LSAAERREKALAMMAKVGLRPE-----H---YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189 (327)
T ss_pred -------CCHHHHHHHHHHHHHHCCCChH-----H---hcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHH
Confidence 0000112456778888877420 1 123467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
...+.+.|.+ .|.|+|+|||+++.+. .||+|++|.+|+.
T Consensus 190 ~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 190 QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999998854 4899999999998874 7999999999865
No 202
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=7.2e-39 Score=305.53 Aligned_cols=212 Identities=27% Similarity=0.370 Sum_probs=169.4
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++++++..+.. .-.+|++++|.|++||.+|||||||||||||+-+++|+.+|++|+|.+.|.+...+.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ld------- 78 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLD------- 78 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcC-------
Confidence 47888888776542 335899999999999999999999999999999999999999999999655443331
Q ss_pred hhhhcccccccchhcccccC-cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
+.....+ .+++|||||...|.+ .|-.||+..|..-.. +
T Consensus 79 -------------Ed~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---------------------------e 118 (228)
T COG4181 79 -------------EDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---------------------------E 118 (228)
T ss_pred -------------HHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---------------------------C
Confidence 1111223 367999999998874 699999988632210 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......+...+.|+.+|++.-+ ..++.+|||||+|||||||||...|++|+-||||-+||.+|-.+|.+.
T Consensus 119 -~~~~~~~~A~~lL~~vGLg~Rl---------~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 119 -SSADSRAGAKALLEAVGLGKRL---------THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred -ccccHHHHHHHHHHHhCccccc---------ccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 0111224466788888876432 345678999999999999999999999999999999999999999887
Q ss_pred HH----hcCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 734 IE----AAGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 734 L~----~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
|- +.|.|.|++|||+.+...|||++.|.+|+..
T Consensus 189 lF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 189 LFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 63 3699999999999999999999999999753
No 203
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-39 Score=337.42 Aligned_cols=213 Identities=23% Similarity=0.276 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL---WSD--GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl---~~p--~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.+....
T Consensus 3 ~l~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~----- 75 (250)
T PRK14245 3 KIDARDVNFWYG--DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK----- 75 (250)
T ss_pred EEEEEEEEEEEC--CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc-----
Confidence 589999999996 35799999999999999999999999999999999997 454 589999964332110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......++.++|+||++.+|..|+.||+.++..... ..
T Consensus 76 ----------------~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~------------~~------------- 114 (250)
T PRK14245 76 ----------------GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNG------------VK------------- 114 (250)
T ss_pred ----------------cccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcC------------CC-------------
Confidence 0011134567999999999998999999976421000 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 115 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 187 (250)
T PRK14245 115 --DNAFIRQRVEETLKGAALWDEVK-----DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187 (250)
T ss_pred --cHHHHHHHHHHHHHHcCCCcchh-----hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 00001234556677666642111 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 188 ~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 188 LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223 (250)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 9875 579999999998765 78999999999865
No 204
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-39 Score=337.31 Aligned_cols=213 Identities=24% Similarity=0.300 Sum_probs=162.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR---- 78 (252)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc----
Confidence 599999999996 3579999999999999999999999999999999999954 6 5999999643221100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+++.++||||++.+|+.|++||+.++.... +..
T Consensus 79 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~------------~~~------------- 116 (252)
T PRK14239 79 -----------------TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLK------------GIK------------- 116 (252)
T ss_pred -----------------cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHc------------CCC-------------
Confidence 01113456799999999999999999997641100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....++++.++++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 117 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (252)
T PRK14239 117 --DKQVLDEAVEKSLKGASIWDEVK-----DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189 (252)
T ss_pred --cHHHHHHHHHHHHHHcCCchhHH-----HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 00001233455566655431110 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++. .+.||++++|++|+.
T Consensus 190 ~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14239 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225 (252)
T ss_pred HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8875 47899999999875 468999999999864
No 205
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.4e-40 Score=321.00 Aligned_cols=209 Identities=26% Similarity=0.347 Sum_probs=171.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+..+|+.++|. ++++++|+||+|++||++++.|||||||||.+.++.|+.+|++|+|.+|+.|...+.
T Consensus 4 ~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP--------- 72 (243)
T COG1137 4 TLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP--------- 72 (243)
T ss_pred EEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC---------
Confidence 588999999995 678999999999999999999999999999999999999999999999765544432
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
-..+.|..|||+|||+.+|.+ ||+|||..--.-.+. .+..
T Consensus 73 -------------m~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~--------------------------d~~~ 113 (243)
T COG1137 73 -------------MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK--------------------------DLKK 113 (243)
T ss_pred -------------hHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc--------------------------chhH
Confidence 123457789999999999976 999999642100000 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH--
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI-- 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L-- 734 (788)
....+++.+.|+++++.++.+. .+..||||||.|+.|||||..+|++++||||++++||.+...|++.+
T Consensus 114 ~~~~~~l~~LL~ef~i~hlr~~---------~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 114 AERKEELDALLEEFHITHLRDS---------KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred HHHHHHHHHHHHHhchHHHhcC---------cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 1223457788888888766543 46789999999999999999999999999999999999999888765
Q ss_pred -HhcCCEEEEEecC-cchhhcCCEEEEEccCCC
Q 040758 735 -EAAGITYISVGHR-RTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~~g~TvI~IaHr-~~~~~~~D~Ilvl~~g~~ 765 (788)
+..|.-|++.-|. .+++..|||.+++.+|+.
T Consensus 185 L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~v 217 (243)
T COG1137 185 LKDRGIGVLITDHNVRETLDICDRAYIISDGKV 217 (243)
T ss_pred HHhCCceEEEccccHHHHHhhhheEEEEecCeE
Confidence 4579999999999 589999999999999975
No 206
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=337.02 Aligned_cols=214 Identities=24% Similarity=0.275 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~---- 77 (253)
T PRK14267 4 AIETVNLRVYYG--SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD---- 77 (253)
T ss_pred eEEEEeEEEEeC--CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc----
Confidence 589999999996 35799999999999999999999999999999999999987 4999999654321000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....++++++|++|++.+|.. |+.||+.++......
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~------------------------- 115 (253)
T PRK14267 78 -----------------VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL------------------------- 115 (253)
T ss_pred -----------------cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-------------------------
Confidence 0111245679999999999975 999999764210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
. .......+++.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 116 ~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 189 (253)
T PRK14267 116 V-KSKKELDERVEWALKKAALWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189 (253)
T ss_pred c-CCHHHHHHHHHHHHHHcCCccchh-----hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 0 000001134556677666532110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ .+||+|++|++|+.
T Consensus 190 ~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 190 ELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred HHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 98875 479999999998764 67999999999875
No 207
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.1e-38 Score=334.97 Aligned_cols=213 Identities=24% Similarity=0.293 Sum_probs=159.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-------- 70 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE-------- 70 (243)
T ss_pred CeEeeEEEEEC--CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCC--------
Confidence 47899999996 45799999999999999999999999999999999999 4799999999654322110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.....+..++|++|++.+|.+ |++||+.+....... + ... . ...
T Consensus 71 --------------~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~------~--~~~-~------------~~~ 115 (243)
T TIGR01978 71 --------------PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRS------A--RGE-E------------PLD 115 (243)
T ss_pred --------------HHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhc------c--ccc-c------------ccc
Confidence 001123459999999999875 899998753110000 0 000 0 000
Q ss_pred CCCChHHHHHHHHhccccc-ccccCCCccccccCCC-CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSS-VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~-~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....+.+.++++.+++.. .. ..... .||||||||++|||||+.+|++|||||||++||+.+.+.+.+.
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 186 (243)
T TIGR01978 116 LLDFLKLLKAKLALLGMDEEFL---------NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186 (243)
T ss_pred HHHHHHHHHHHHHHcCCchhhc---------ccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 0001234566777776642 21 12233 4999999999999999999999999999999999999999998
Q ss_pred HHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 734 IEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+. . ||++++|++|+.
T Consensus 187 l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 187 INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred HHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEE
Confidence 865 4899999999998764 5 899999999864
No 208
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-38 Score=317.16 Aligned_cols=169 Identities=32% Similarity=0.578 Sum_probs=144.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.+.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 69 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL----------- 69 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc-----------
Confidence 468999999974323699999999999999999999999999999999999999999999964322111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|++|++.+|+.|+.||+
T Consensus 70 ------------~~~~~~~~i~~~~~~~~~~~~t~~e~l----------------------------------------- 96 (171)
T cd03228 70 ------------DLESLRKNIAYVPQDPFLFSGTIRENI----------------------------------------- 96 (171)
T ss_pred ------------CHHHHHhhEEEEcCCchhccchHHHHh-----------------------------------------
Confidence 111234679999999988877776653
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+
T Consensus 97 ---------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 97 ---------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143 (171)
T ss_pred ---------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999998865
Q ss_pred cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.++|+|++||+++.+..||++++|++|+
T Consensus 144 ~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 144 KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 4799999999988776699999999874
No 209
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.9e-38 Score=324.00 Aligned_cols=193 Identities=32% Similarity=0.404 Sum_probs=157.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 1 l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~---------- 65 (201)
T cd03231 1 LEADELTCERD--GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGP---LD---------- 65 (201)
T ss_pred CEEEEEEEEeC--CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe---cc----------
Confidence 47899999996 3579999999999999999999999999999999999999999999996432 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .....+++++|++|++.++ +.|++||+.+....
T Consensus 66 ----------~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------- 100 (201)
T cd03231 66 ----------F-QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD---------------------------------- 100 (201)
T ss_pred ----------c-ccHHhhhheEEeccccccCCCcCHHHHHHhhccc----------------------------------
Confidence 0 0013456799999999887 57999999774211
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 101 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 101 HSDEQVEEALARVGLNGFE---------DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred ccHHHHHHHHHHcCChhhh---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 0124556667777665322 223567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCc-chhhcCCEEEEE
Q 040758 737 --AGITYISVGHRR-TLYDFHKRVLRI 760 (788)
Q Consensus 737 --~g~TvI~IaHr~-~~~~~~D~Ilvl 760 (788)
.|+|+|++||+. ....+|++++++
T Consensus 172 ~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 172 CARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HhCCCEEEEEecCchhhhhccceeEec
Confidence 589999999985 567899999887
No 210
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-38 Score=339.67 Aligned_cols=210 Identities=22% Similarity=0.310 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 7 ~l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 74 (265)
T PRK10253 7 RLRGEQLTLGYG--KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY---------- 74 (265)
T ss_pred EEEEEEEEEEEC--CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC----------
Confidence 699999999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|+||++.+|. .|++||+.++..... +.. ....
T Consensus 75 -------------~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~--------------~~~----------~~~~ 117 (265)
T PRK10253 75 -------------ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQ--------------PLF----------TRWR 117 (265)
T ss_pred -------------CHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccc--------------ccc----------cCCC
Confidence 11122356999999998875 699999987531100 000 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 118 KEDEEAVTKAMQATGITHLA---------DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred HHHHHHHHHHHHHcCCHHHh---------cCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 01123456777777665332 234677999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||++++|++|+.
T Consensus 189 l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 222 (265)
T PRK10253 189 LNREKGYTLAAVLHDLNQACRYASHLIALREGKI 222 (265)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999875 578999999999874
No 211
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=338.06 Aligned_cols=214 Identities=22% Similarity=0.273 Sum_probs=163.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~ 571 (788)
.+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|. ++..
T Consensus 11 ~~l~i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~---~~~~-- 83 (259)
T PRK14274 11 EVYQINGMNLWYG--QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS---NILK-- 83 (259)
T ss_pred ceEEEeeEEEEEC--CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE---Eccc--
Confidence 3699999999996 3579999999999999999999999999999999999997 3 6999999644 3210
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
. .......++.++|+||++.+|..|++||+.++......
T Consensus 84 ----------~------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~------------------------- 122 (259)
T PRK14274 84 ----------G------KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGT------------------------- 122 (259)
T ss_pred ----------c------ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCC-------------------------
Confidence 0 00111235679999999999999999999874210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+++.++++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 123 --~~~~~~~~~~~~~l~~~~l~~~~~-----~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 195 (259)
T PRK14274 123 --KNKKKLQEIVEKSLKDVALWDEVK-----DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195 (259)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 000001123445566665532110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|+|||+++.+ +.||++++|++|+.
T Consensus 196 ~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 232 (259)
T PRK14274 196 ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGEL 232 (259)
T ss_pred HHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999998764 68999999999875
No 212
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.8e-39 Score=349.41 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=162.2
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~----p~~G~I~~~~~~~~~i~~~~ 571 (788)
.|+++||++.|+..+ ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.+...+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~--- 79 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS--- 79 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC---
Confidence 489999999997422 369999999999999999999999999999999999998 48999999655432221
Q ss_pred Cccchhhhcccccccchhccccc-CcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
...... .++.|+||||++. ++. .|+.+++...... .
T Consensus 80 -----------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~------------~----------- 119 (326)
T PRK11022 80 -----------------EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV------------H----------- 119 (326)
T ss_pred -----------------HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH------------h-----------
Confidence 001111 2346999999985 333 4777666431000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
.........+.+.++|+.+++..... ....++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 120 ----~~~~~~~~~~~~~~~L~~~gL~~~~~------~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~ 189 (326)
T PRK11022 120 ----QGGNKKTRRQRAIDLLNQVGIPDPAS------RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQ 189 (326)
T ss_pred ----cCCCHHHHHHHHHHHHHHCCCCChHH------HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 00000012345677888887753211 12345778999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|++ .|.|+|+|||+++.+ ++||+|++|.+|+.
T Consensus 190 ~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~i 232 (326)
T PRK11022 190 AQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232 (326)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999988754 489999999999876 68999999999864
No 213
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1e-38 Score=349.24 Aligned_cols=216 Identities=25% Similarity=0.345 Sum_probs=163.3
Q ss_pred CcEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|+++.|+.+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+...+.
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~--- 87 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP--- 87 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC---
Confidence 369999999999632 246999999999999999999999999999999999999996 999999654432221
Q ss_pred CccchhhhcccccccchhcccccCc-ceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNS-RGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
....+..| +.|+||||++ .++. .|+.+|+..+..... +
T Consensus 88 -----------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~-----------~---------- 129 (330)
T PRK09473 88 -----------------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-----------G---------- 129 (330)
T ss_pred -----------------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc-----------C----------
Confidence 01111223 4799999998 4544 588888754210000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
.......+.+.+.|+.+++.. +.+..+.++.+||||||||++|||||+.+|++||+|||||+||+.+.
T Consensus 130 ------~~~~~~~~~~~~~L~~vgL~~------~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~ 197 (330)
T PRK09473 130 ------MSKAEAFEESVRMLDAVKMPE------ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQ 197 (330)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCC------hHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 000001234566777776642 11223456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|++ .|.|+|+|||+++.+ +.||+|++|.+|+.
T Consensus 198 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 198 AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240 (330)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999988753 389999999999876 57999999999864
No 214
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=336.52 Aligned_cols=213 Identities=24% Similarity=0.297 Sum_probs=163.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~----- 76 (251)
T PRK14251 4 IISAKDVHLSYG--NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS----- 76 (251)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc-----
Confidence 589999999996 3579999999999999999999999999999999999997 4799999964432110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......++.++|++|++.+|..|++||+.++.... +..+
T Consensus 77 ----------------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~------------~~~~------------ 116 (251)
T PRK14251 77 ----------------KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIA------------GVKD------------ 116 (251)
T ss_pred ----------------cchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHc------------CCCC------------
Confidence 001113456799999999999999999998642100 0000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+++.++++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 117 ---~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~ 188 (251)
T PRK14251 117 ---KELIDQRVEESLKQAAIWKETK-----DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188 (251)
T ss_pred ---HHHHHHHHHHHHHHcCCCcchH-----HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH
Confidence 0001133455666665531100 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|+|||+++.+ +.||+|++|++|+.
T Consensus 189 ~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14251 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224 (251)
T ss_pred HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEE
Confidence 8875 479999999998764 67999999999875
No 215
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=336.17 Aligned_cols=213 Identities=23% Similarity=0.300 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~---~~~---- 73 (250)
T PRK14262 3 IIEIENFSAYYG--EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ---DIY---- 73 (250)
T ss_pred eEEEEeeEEEeC--CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE---Ecc----
Confidence 589999999996 35799999999999999999999999999999999999984 8999999643 221
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.. ......+++.++|++|++.+|..|++||+.++..... .
T Consensus 74 --------~~------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~------------~-------------- 113 (250)
T PRK14262 74 --------DP------QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHG------------V-------------- 113 (250)
T ss_pred --------cc------hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcC------------C--------------
Confidence 00 0011133567999999999999999999976421000 0
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......++.+.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 114 -~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 187 (250)
T PRK14262 114 -KSKHKLDRIVEESLKKAALWDEVK-----SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187 (250)
T ss_pred -CcHHHHHHHHHHHHHHcCCCchhH-----HHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence 000001233455666665532111 01234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|.+ .++|+|++||+++. ..+||++++|++|+.
T Consensus 188 ~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred HHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8865 47999999999875 578999999999875
No 216
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-38 Score=330.04 Aligned_cols=202 Identities=25% Similarity=0.345 Sum_probs=160.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ~l~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 66 (232)
T PRK10771 1 MLKLTDITWLYHH--LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT---------- 66 (232)
T ss_pred CeEEEEEEEEECC--cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC----------
Confidence 3789999999963 22 499999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. ..++.++|+||++.+|.. |+.||+.++.... .. ..
T Consensus 67 -------------~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~---------------------------~~ 103 (232)
T PRK10771 67 -------------P--PSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LK---------------------------LN 103 (232)
T ss_pred -------------C--hhhccEEEEecccccccCCcHHHHHhcccccc-cC---------------------------CC
Confidence 0 113569999999999975 9999998752110 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++++.++++.++++...+ .....||||||||++||||++++|+++||||||++||+.+.+.+.+.|++
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDLLA---------RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred HHHHHHHHHHHHHcCcHHHHh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011345677788777654332 23567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 208 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRI 208 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 389999999999865 67999999999864
No 217
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-38 Score=355.10 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=158.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++++...|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 29 ~~~~~~~~~~~--~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~---------- 96 (400)
T PRK10070 29 LSKEQILEKTG--LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS---------- 96 (400)
T ss_pred ccHHHHHhhcC--CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCC----------
Confidence 34444444442 224899999999999999999999999999999999999999999999654332211
Q ss_pred hcccccccchhcccc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 579 VNSQNMNGELTRSMN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..... ..+++++||+|++.+|. .|++||+.++.... +. ..
T Consensus 97 ----------~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~------------~~----------------~~ 138 (400)
T PRK10070 97 ----------DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA------------GI----------------NA 138 (400)
T ss_pred ----------HHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc------------CC----------------CH
Confidence 00011 12357999999999996 59999998752100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++||||||||+||+.+...+++.|.+
T Consensus 139 ~~~~~~~~e~L~~~gL~~~~~---------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 139 EERREKALDALRQVGLENYAH---------SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK 209 (400)
T ss_pred HHHHHHHHHHHHHcCCChhhh---------cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 011245667788877754332 34567999999999999999999999999999999999999999998853
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||+|++|++|+.
T Consensus 210 l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 210 LQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243 (400)
T ss_pred HHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 48999999999875 478999999999874
No 218
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=1.8e-38 Score=329.25 Aligned_cols=197 Identities=26% Similarity=0.308 Sum_probs=160.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~l~~v~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~~---------- 65 (223)
T TIGR03740 1 LETKNLSKRFG--KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH---PWT---------- 65 (223)
T ss_pred CEEEeEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ecc----------
Confidence 46899999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.. . ++.++|+||++.+|. .|++||+.++.... .
T Consensus 66 ------------~~-~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--------------------------------~ 99 (223)
T TIGR03740 66 ------------RK-D-LHKIGSLIESPPLYENLTARENLKVHTTLL--------------------------------G 99 (223)
T ss_pred ------------cc-c-cccEEEEcCCCCccccCCHHHHHHHHHHHc--------------------------------C
Confidence 00 1 246999999998886 59999997531100 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
....++.+.++.++++...+ .....||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~ 170 (223)
T TIGR03740 100 LPDSRIDEVLNIVDLTNTGK---------KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF 170 (223)
T ss_pred CCHHHHHHHHHHcCCcHHHh---------hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH
Confidence 11245566777776653322 23567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 171 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 171 PEQGITVILSSHILSEVQQLADHIGIISEGVL 202 (223)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEE
Confidence 589999999998765 68999999999875
No 219
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.6e-38 Score=332.84 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~i~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~---~~~---------- 65 (237)
T TIGR00968 1 IEIANISKRFG--SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ---DAT---------- 65 (237)
T ss_pred CEEEEEEEEEC--CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE---EcC----------
Confidence 47899999996 357999999999999999999999999999999999999999999999643 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.+ |+.||+.+....... ...
T Consensus 66 ------------~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~----------------------------~~~ 105 (237)
T TIGR00968 66 ------------RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH----------------------------PKA 105 (237)
T ss_pred ------------cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC----------------------------CHH
Confidence 001124579999999999975 999999864211000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+|||||+||++|||||+++|+++||||||++||++++..+.+.|.+
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~ 176 (237)
T TIGR00968 106 KIKARVEELLELVQLEGLGD---------RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176 (237)
T ss_pred HHHHHHHHHHHHcCCHhHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 01234566777766643222 23467999999999999999999999999999999999999999998864
Q ss_pred --c-CCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 --A-GITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
. ++|+|++||+++. .+.||++++|++|+.
T Consensus 177 ~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 177 HDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred HHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 3 8999999999876 577999999999875
No 220
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=334.26 Aligned_cols=212 Identities=24% Similarity=0.261 Sum_probs=163.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 6 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 79 (253)
T PRK14261 6 ILSTKNLNLWYG--EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG---- 79 (253)
T ss_pred eEEEeeeEEEEC--CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc----
Confidence 699999999996 45799999999999999999999999999999999999763 4899999643321110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+....++.++|++|++.+|+.|++||+.++..... ..+
T Consensus 80 -----------------~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~------------~~~------------ 118 (253)
T PRK14261 80 -----------------ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHG------------EKN------------ 118 (253)
T ss_pred -----------------cchhhhhceEEEEecCCccCcccHHHHHHhhHHhcC------------CCC------------
Confidence 011234567999999999999999999987521000 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
....++.+.++++.+++... +.+ .+..+..||||||||++|||||+.+|+++||||||++||+.+.+.+.
T Consensus 119 ---~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~ 189 (253)
T PRK14261 119 ---KKTLDTIVEKSLKGAALWDE------VKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189 (253)
T ss_pred ---HHHHHHHHHHHHHHhcCchh------hHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 00012334555665554321 111 24456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 190 ~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14261 190 DLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226 (253)
T ss_pred HHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 98875 468999999998765 68999999999864
No 221
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=337.75 Aligned_cols=215 Identities=25% Similarity=0.282 Sum_probs=164.7
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ +..
T Consensus 23 ~~~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~---i~~- 96 (272)
T PRK14236 23 QTALEVRNLNLFYG--DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN---IYD- 96 (272)
T ss_pred CcEEEEEEEEEEEC--CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE---Ccc-
Confidence 34799999999996 35799999999999999999999999999999999999984 89999996433 210
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. .......++.++|++|++.+|..|++||+.++.......
T Consensus 97 -----------~------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~----------------------- 136 (272)
T PRK14236 97 -----------K------KVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIN----------------------- 136 (272)
T ss_pred -----------c------ccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCC-----------------------
Confidence 0 001113456799999999999889999998642100000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+.+.++++.+++..... +..+..+..||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 137 ----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 207 (272)
T PRK14236 137 ----NRRVLDEAVERSLRGAALWDEVK-----DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207 (272)
T ss_pred ----cHHHHHHHHHHHHHHcCCChhHH-----HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH
Confidence 00001123455566555432110 012345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ +++|+|++||+++.+ +.||++++|++|+.
T Consensus 208 ~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 208 EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred HHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 998865 479999999998764 68999999999875
No 222
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-38 Score=333.74 Aligned_cols=213 Identities=24% Similarity=0.265 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~---- 77 (251)
T PRK14270 4 KMESKNLNLWYG--EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD---- 77 (251)
T ss_pred EEEEEEeEEEEC--CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc----
Confidence 689999999996 35799999999999999999999999999999999999885 7999999644321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|+||++.+|..|++||+.++.... +..
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~------------~~~------------- 115 (251)
T PRK14270 78 -----------------VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH------------GIK------------- 115 (251)
T ss_pred -----------------ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhc------------CCC-------------
Confidence 01112356799999999999999999998742100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++..... +........||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 116 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 188 (251)
T PRK14270 116 --DKKELDKIVEWALKKAALWDEVK-----DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188 (251)
T ss_pred --cHHHHHHHHHHHHHHcCCchhhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00001123455666665532110 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 189 ~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i 224 (251)
T PRK14270 189 LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL 224 (251)
T ss_pred HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeE
Confidence 8875 479999999998764 67999999999875
No 223
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-38 Score=334.63 Aligned_cols=213 Identities=25% Similarity=0.280 Sum_probs=163.2
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCCc
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
-+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 6 ~~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~----- 78 (251)
T PRK14244 6 ASVKNLNLWYG--SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD----- 78 (251)
T ss_pred EEeeeEEEEEC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc-----
Confidence 46899999996 4579999999999999999999999999999999999986 47999999654321110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.++|+||++.+|+.|+.||+.++....... .
T Consensus 79 ----------------~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~------------~------------- 117 (251)
T PRK14244 79 ----------------TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLA------------K------------- 117 (251)
T ss_pred ----------------cchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCC------------C-------------
Confidence 01112456799999999999999999998641100000 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....++++.++++.+++..... +.....+..||||||||++|||||+++|++|||||||++||+.+...+.+.
T Consensus 118 -~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 191 (251)
T PRK14244 118 -NKKKLDEIVEKSLTSVGLWEELG-----DRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL 191 (251)
T ss_pred -CHHHHHHHHHHHHHHcCCCchhh-----hHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 00001234556777776643110 011334677999999999999999999999999999999999999999998
Q ss_pred HHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+ +.||++++|++|+.
T Consensus 192 l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 192 IQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred HHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 865 589999999998765 57999999999875
No 224
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-38 Score=337.36 Aligned_cols=213 Identities=23% Similarity=0.303 Sum_probs=162.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 23 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~---- 96 (271)
T PRK14238 23 VVFDTQNLNLWYG--EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK---- 96 (271)
T ss_pred eEEEEeeeEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc----
Confidence 3699999999996 3569999999999999999999999999999999999987 6999999964332100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|+||++.+|..|+.||+.++........
T Consensus 97 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~----------------------- 136 (271)
T PRK14238 97 -----------------SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD----------------------- 136 (271)
T ss_pred -----------------cccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCc-----------------------
Confidence 0011133567999999999998999999986421000000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.....+.+.++++.+++.. ++.. ....+..||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 137 ----~~~~~~~~~~~l~~~~~~~------~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l 206 (271)
T PRK14238 137 ----KKTLDEIVEKSLRGAAIWD------ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV 206 (271)
T ss_pred ----HHHHHHHHHHHHHHcCCcc------hHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 0000122334444443211 1111 2345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 207 ~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 244 (271)
T PRK14238 207 EELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYV 244 (271)
T ss_pred HHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 998865 479999999998765 68999999999875
No 225
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-38 Score=339.27 Aligned_cols=215 Identities=23% Similarity=0.231 Sum_probs=164.1
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
...|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.....
T Consensus 37 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~-- 112 (286)
T PRK14275 37 KPHVVAKNFSIYYG--EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF-- 112 (286)
T ss_pred ceEEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc--
Confidence 34699999999996 3569999999999999999999999999999999999864 49999999643211100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....+++.++|++|++.+|+.|+.||+.++..... ..+
T Consensus 113 -------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~------------~~~---------- 151 (286)
T PRK14275 113 -------------------TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHG------------IND---------- 151 (286)
T ss_pred -------------------cchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcC------------CCc----------
Confidence 011124567999999999998899999987521000 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.....+.+.++++.+++...+. +.....+..||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 152 -----~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l 221 (286)
T PRK14275 152 -----KKQLEEIVEKSLRKAALWDEVS-----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI 221 (286)
T ss_pred -----HHHHHHHHHHHHHHhCCccchh-----hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 0001133455666655431110 112345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 222 ~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 222 EDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVL 259 (286)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999875 468999999998765 67999999999875
No 226
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-38 Score=324.62 Aligned_cols=198 Identities=28% Similarity=0.323 Sum_probs=158.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 10 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~---~i~-------- 76 (214)
T PRK13543 10 PLLAAHALAFSRN--EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK---TAT-------- 76 (214)
T ss_pred ceEEEeeEEEecC--CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE---Ecc--------
Confidence 3699999999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ...++.++|++|++.++.. |+.||+.+..... +
T Consensus 77 --------------~-~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~------------~------------------ 111 (214)
T PRK13543 77 --------------R-GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH------------G------------------ 111 (214)
T ss_pred --------------c-hhhhhceEEeecCcccccCCcHHHHHHHHHHhc------------C------------------
Confidence 0 0123469999999998876 9999996531000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+.+.+.++.+++.... ......||||||||++||||++++|++|||||||++||+++.+.+.+.|+
T Consensus 112 -~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (214)
T PRK13543 112 -RRAKQMPGSALAIVGLAGYE---------DTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMIS 181 (214)
T ss_pred -CcHHHHHHHHHHHcCChhhc---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00123345566666654322 23356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|++||+.+.+ ++||++++++.
T Consensus 182 ~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 182 AHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 4 589999999998754 78999999874
No 227
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.2e-38 Score=345.36 Aligned_cols=196 Identities=22% Similarity=0.270 Sum_probs=155.5
Q ss_pred EcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccccccc
Q 040758 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586 (788)
Q Consensus 507 ~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 586 (788)
+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+ +. .
T Consensus 2 ~y~--~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~-----------------~ 59 (302)
T TIGR01188 2 VYG--DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD---VV-----------------R 59 (302)
T ss_pred eeC--CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---cc-----------------c
Confidence 453 4579999999999999999999999999999999999999999999996433 21 0
Q ss_pred chhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHH
Q 040758 587 ELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665 (788)
Q Consensus 587 ~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 665 (788)
.....++.+||+||++.+|.. |++||+.+.... .+. ......+.+.+
T Consensus 60 ----~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------------~~~----------------~~~~~~~~~~~ 107 (302)
T TIGR01188 60 ----EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL------------YGL----------------PKDEAEERAEE 107 (302)
T ss_pred ----CHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH------------cCC----------------CHHHHHHHHHH
Confidence 001235679999999999875 999999763110 000 00001234667
Q ss_pred HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEE
Q 040758 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYI 742 (788)
Q Consensus 666 ~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI 742 (788)
+++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|
T Consensus 108 ~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi 178 (302)
T TIGR01188 108 LLELFELGEAA---------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178 (302)
T ss_pred HHHHcCChhHh---------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 78887765432 234567999999999999999999999999999999999999999988864 589999
Q ss_pred EEecCcchh-hcCCEEEEEccCCC
Q 040758 743 SVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 743 ~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++||+++.+ +.||+|++|++|+.
T Consensus 179 ~~sH~~~~~~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 179 LTTHYMEEADKLCDRIAIIDHGRI 202 (302)
T ss_pred EECCCHHHHHHhCCEEEEEECCEE
Confidence 999998765 67999999999975
No 228
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-38 Score=331.09 Aligned_cols=203 Identities=27% Similarity=0.349 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~~~~l~~~~~--~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----------- 67 (232)
T cd03300 1 IELENVSKFYG--GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL----------- 67 (232)
T ss_pred CEEEeEEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-----------
Confidence 46899999996 35799999999999999999999999999999999999999999999964322111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ..++.++|++|++.+|.+ |++||+.++.... +. ...
T Consensus 68 ------------~--~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~------------~~----------------~~~ 105 (232)
T cd03300 68 ------------P--PHKRPVNTVFQNYALFPHLTVFENIAFGLRLK------------KL----------------PKA 105 (232)
T ss_pred ------------C--hhhcceEEEecccccCCCCcHHHHHHHHHHhc------------CC----------------CHH
Confidence 0 123569999999999965 9999997631100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.++++...+ .....||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 106 EIKERVAEALDLVQLEGYAN---------RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred HHHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 11234566777777654332 23567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 177 ~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 177 QKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 389999999998764 67999999999875
No 229
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-38 Score=347.53 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=160.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|++ ||+++|++ + .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~--------- 66 (352)
T PRK11144 1 MLEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE--------- 66 (352)
T ss_pred CeEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc---------
Confidence 3677 99999953 3 23 999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
........++.++||+|++.+|. .|++||+.|+...
T Consensus 67 ----------~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~--------------------------------- 103 (352)
T PRK11144 67 ----------KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK--------------------------------- 103 (352)
T ss_pred ----------cccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------------------------------
Confidence 00011123567999999999996 5999999885311
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 104 -~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 104 -SMVAQFDKIVALLGIEPLLD---------RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred -hhHHHHHHHHHHcCCchhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 01245667777777654332 34577999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ...||++++|++|+.
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i 207 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKV 207 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 38999999999864 578999999999864
No 230
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-38 Score=332.52 Aligned_cols=213 Identities=24% Similarity=0.286 Sum_probs=161.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14255 5 IITSSDVHLFYG--KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN---- 78 (252)
T ss_pred eEEEEeEEEEEC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc----
Confidence 699999999996 3579999999999999999999999999999999999975 5 5999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|++|++.+|..|+++|+.++.......
T Consensus 79 -----------------~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~------------------------- 116 (252)
T PRK14255 79 -----------------EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVK------------------------- 116 (252)
T ss_pred -----------------ccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCC-------------------------
Confidence 01113356799999999999999999997641100000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....++++.+.++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 117 --~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (252)
T PRK14255 117 --DKAVLDEAVETSLKQAAIWDEVK-----DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189 (252)
T ss_pred --CHHHHHHHHHHHHHHcCCccchh-----hHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 00000123344555554421110 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .+.|+|+|||+++.+ ++||+|++|++|+.
T Consensus 190 ~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 190 MLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225 (252)
T ss_pred HHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8875 468999999998875 67999999999875
No 231
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-38 Score=338.02 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=164.7
Q ss_pred CCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCccccc
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDA 569 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~ 569 (788)
....|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..+..
T Consensus 36 ~~~~l~i~~l~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~- 112 (285)
T PRK14254 36 GETVIEARDLNVFYG--DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD- 112 (285)
T ss_pred CCceEEEEEEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc-
Confidence 345799999999996 3579999999999999999999999999999999999997 68999999654321100
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
.+....++.++|++|++.+|..|+.||+.++.... +.
T Consensus 113 --------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~------------~~----------- 149 (285)
T PRK14254 113 --------------------VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQ------------GY----------- 149 (285)
T ss_pred --------------------cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHc------------CC-----------
Confidence 01113456799999999999889999997641100 00
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
.....+++.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...
T Consensus 150 ------~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~ 218 (285)
T PRK14254 150 ------DGDIDERVEESLRRAALWDEVK-----DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSK 218 (285)
T ss_pred ------cHHHHHHHHHHHHHcCCCchhH-----HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHH
Confidence 0001234566677666532110 11234567899999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchh-hcCCEEE-EEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLY-DFHKRVL-RISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~-~~~D~Il-vl~~g~~ 765 (788)
+.+.|++ .++|+|++||+++.+ .+|||++ +|++|+.
T Consensus 219 l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i 258 (285)
T PRK14254 219 IEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGEL 258 (285)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEE
Confidence 9998875 368999999998765 5799975 5688864
No 232
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-38 Score=321.01 Aligned_cols=193 Identities=23% Similarity=0.351 Sum_probs=155.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ml~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~---~~~--------- 66 (200)
T PRK13540 1 MLDVIELDFDYH--DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ---SIK--------- 66 (200)
T ss_pred CEEEEEEEEEeC--CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCC---ccc---------
Confidence 378999999996 357999999999999999999999999999999999999999999999543 331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. .....+++++|++|++.++ ..|++||+.++....
T Consensus 67 --------~----~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-------------------------------- 102 (200)
T PRK13540 67 --------K----DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-------------------------------- 102 (200)
T ss_pred --------c----CHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC--------------------------------
Confidence 0 0012356799999999987 579999998742100
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.....+.+.++.+++....+ .....||||||||++||||++++|++|||||||++||+.+...+.+.|++
T Consensus 103 -~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 103 -PGAVGITELCRLFSLEHLID---------YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172 (200)
T ss_pred -cchHHHHHHHHHcCCchhhh---------CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 01124556666665543222 22456999999999999999999999999999999999999999998874
Q ss_pred ---cCCEEEEEecCcchhhcCCEEE
Q 040758 737 ---AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~~~D~Il 758 (788)
.|+|+|++||+.+.+..||.-+
T Consensus 173 ~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 173 HRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHcCCEEEEEeCCchhccccchhh
Confidence 5899999999999988898754
No 233
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.2e-38 Score=325.33 Aligned_cols=203 Identities=27% Similarity=0.346 Sum_probs=157.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
+++ ||+++|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 65 (214)
T cd03297 2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR---------- 65 (214)
T ss_pred cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc----------
Confidence 445 89999963 334 99999999 999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...+....++.++|++|++.+|. .|++||+.++...... .
T Consensus 66 ---------~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~------------------------------~ 106 (214)
T cd03297 66 ---------KKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRN------------------------------R 106 (214)
T ss_pred ---------chhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCH------------------------------H
Confidence 00011123567999999999986 5999999764211000 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (214)
T cd03297 107 EDRISVDELLDLLGLDHLL---------NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQI 177 (214)
T ss_pred HHHHHHHHHHHHcCCHhHh---------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677776654322 234677999999999999999999999999999999999999999998864
Q ss_pred --c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ |+|+|++||+.+.+ ..||++++|++|+.
T Consensus 178 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (214)
T cd03297 178 KKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210 (214)
T ss_pred HHHcCcEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 3 89999999998765 68999999999863
No 234
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=333.81 Aligned_cols=210 Identities=24% Similarity=0.277 Sum_probs=160.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 4 ~l~i~~v~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~---- 77 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG---- 77 (258)
T ss_pred cEEEeeEEEEEC--CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc----
Confidence 589999999996 35799999999999999999999999999999999999974 7999999644321000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++.++|++|++.+|. .|++||+.++......
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~------------------------- 115 (258)
T PRK14241 78 -----------------VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGV------------------------- 115 (258)
T ss_pred -----------------cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCC-------------------------
Confidence 001134567999999999987 5999999764210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......++.+.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 --~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 188 (258)
T PRK14241 116 --RNKKDLDELVEKSLRGANLWNEVK-----DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE 188 (258)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 000001234556666666532110 0123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|++ .++|+|+|||+++.+ +.||+|++|++
T Consensus 189 ~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 189 DLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222 (258)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 98865 478999999998765 68999999973
No 235
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-38 Score=334.61 Aligned_cols=213 Identities=26% Similarity=0.271 Sum_probs=163.7
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 20 ~~l~i~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~---- 93 (276)
T PRK14271 20 PAMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY---- 93 (276)
T ss_pred cEEEEeeEEEEEC--CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc----
Confidence 3689999999996 46799999999999999999999999999999999999986 699999964322111
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....+++.++|+||++.+|+.|++||+.++........
T Consensus 94 ------------------~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~----------------------- 132 (276)
T PRK14271 94 ------------------RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVP----------------------- 132 (276)
T ss_pred ------------------chhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCC-----------------------
Confidence 001133567999999999999999999987421100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.+.++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 133 ----~~~~~~~~~~~l~~~~l~~~~~-----~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~ 203 (276)
T PRK14271 133 ----RKEFRGVAQARLTEVGLWDAVK-----DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203 (276)
T ss_pred ----HHHHHHHHHHHHHHcCCCchhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0000112344566655532110 0123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 204 ~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i 240 (276)
T PRK14271 204 EFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240 (276)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98875 368999999998764 68999999999865
No 236
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=331.98 Aligned_cols=212 Identities=25% Similarity=0.298 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ +.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---~~---- 73 (249)
T PRK14253 3 KFNIENLDLFYG--ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED---IY---- 73 (249)
T ss_pred eEEEeccEEEEC--CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE---cc----
Confidence 589999999996 45799999999999999999999999999999999999986 59999996432 21
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
. ..+....++.++|+||++.+|..|+.||+.++....... +
T Consensus 74 -------------~--~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~------------~------------ 114 (249)
T PRK14253 74 -------------G--NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIK------------D------------ 114 (249)
T ss_pred -------------c--ccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCC------------c------------
Confidence 0 001113456799999999999999999998742110000 0
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+++.+.++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 115 ---~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 186 (249)
T PRK14253 115 ---KKVLDEVVERSLRGAALWDEVK-----DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186 (249)
T ss_pred ---hHHHHHHHHHHHHHcCCchhhh-----HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 0001123445555555432110 11234467899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ +++|+|++||+++.+ ..||++++|++|+.
T Consensus 187 ~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 187 LMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGEL 222 (249)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8875 478999999998764 57999999999874
No 237
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-38 Score=335.44 Aligned_cols=210 Identities=26% Similarity=0.344 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--------CceEEEeeccCccccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG--------RGKITFYVKDREETDA 569 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~--------~G~I~~~~~~~~~i~~ 569 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 1 ml~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~-- 76 (272)
T PRK13547 1 MLTADHLHVARR--HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI-- 76 (272)
T ss_pred CeEEEEEEEEEC--CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC--
Confidence 378999999995 457999999999999999999999999999999999999998 99999964432111
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccc-cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL 648 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~ 648 (788)
+....++.++|+||++. +|..|++||+.++...... ..+.
T Consensus 77 ---------------------~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~--------~~~~---------- 117 (272)
T PRK13547 77 ---------------------DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR--------RAGA---------- 117 (272)
T ss_pred ---------------------CHHHHHhhcEEecccCCCCCCCcHHHHHhhccccccc--------cccc----------
Confidence 11123445899999986 5678999999875321000 0000
Q ss_pred hhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc---------cCCCEEEEecCC
Q 040758 649 ENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL---------SKPQIVLLDEST 719 (788)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl---------~~p~iLiLDEpT 719 (788)
......+.+.++++.+++.... +....+||||||||++|||||+ .+|++|||||||
T Consensus 118 ------~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt 182 (272)
T PRK13547 118 ------LTHRDGEIAWQALALAGATALV---------GRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182 (272)
T ss_pred ------CCHHHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcc
Confidence 0001123456677777664322 3446789999999999999999 599999999999
Q ss_pred CCCCHHHHHHHHHHHHh---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 720 SALDEANEAHLYEQIEA---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 720 SaLD~~se~~i~~~L~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++||+.+...+.+.|++ . |+|+|+|||+++.+ ++||++++|++|+.
T Consensus 183 ~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 99999999999998864 3 89999999998766 68999999999874
No 238
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.6e-38 Score=321.29 Aligned_cols=197 Identities=26% Similarity=0.353 Sum_probs=157.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~---------- 68 (204)
T PRK13538 1 MLEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ---------- 68 (204)
T ss_pred CeEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc----------
Confidence 378999999996 35799999999999999999999999999999999999999999999964332110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. ...+++++|++|++.++. .|++||+.++.....
T Consensus 69 -------------~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------------------------------- 103 (204)
T PRK13538 69 -------------R-DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG------------------------------- 103 (204)
T ss_pred -------------h-HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC-------------------------------
Confidence 0 123467999999998876 599999976421000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... ......||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 104 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 104 PGDDEALWEALAQVGLAGFE---------DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred ccHHHHHHHHHHHcCCHHHh---------hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 01234566778877765332 223567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEE
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRI 760 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl 760 (788)
.|+|+|++||+++.+ .+.+|++++
T Consensus 175 ~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 175 HAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHCCCEEEEEecChhhhccCCceEEec
Confidence 489999999998776 456787776
No 239
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=5.1e-38 Score=333.12 Aligned_cols=214 Identities=24% Similarity=0.277 Sum_probs=160.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc--cccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE--TDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~--i~~~~~~~~ 575 (788)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~------- 76 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY------- 76 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc-------
Confidence 6999999999963 579999999999999999999999999999999999999999999996543100 21
Q ss_pred hhhhcccccccchhcccc-cCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMN-RNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
........ ..++.++|+||++. ++. .|+.+|+.++.... +..+
T Consensus 77 ----------~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~------------~~~~----------- 123 (258)
T PRK11701 77 ----------ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV------------GARH----------- 123 (258)
T ss_pred ----------cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh------------ccCc-----------
Confidence 00000000 12456999999984 333 48888886421000 0000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.++++.+++.. +.....+.+||||||||++|||||+.+|++|||||||++||+.+++.+.
T Consensus 124 ----~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~ 191 (258)
T PRK11701 124 ----YGDIRATAGDWLERVEIDA--------ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191 (258)
T ss_pred ----HHHHHHHHHHHHHHcCCCh--------hHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0001234456666665531 0123456789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|++ .|.|+|+|||+.+.+. .||+|++|++|+.
T Consensus 192 ~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 192 DLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 88753 3899999999998774 7999999999875
No 240
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=4.7e-38 Score=316.14 Aligned_cols=170 Identities=26% Similarity=0.418 Sum_probs=144.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++| +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 68 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS--------- 68 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC---------
Confidence 59999999988 799999999999999999999999999999999999999999999643321110
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....++.++|++|++ .++ ..|++||+.++.
T Consensus 69 -------------~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-------------------------------- 103 (182)
T cd03215 69 -------------PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS-------------------------------- 103 (182)
T ss_pred -------------HHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh--------------------------------
Confidence 0112356799999995 344 469999986520
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.||||||||++|||||+.+|++|||||||++||+.+.+.+.+.
T Consensus 104 -------------------------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 104 -------------------------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred -------------------------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 0999999999999999999999999999999999999999998
Q ss_pred HHh---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 734 IEA---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
|++ .|+|+|++||+++.+ +.||++++|++|+
T Consensus 147 l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 147 IRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 864 489999999998654 6799999999875
No 241
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=4.2e-38 Score=348.56 Aligned_cols=207 Identities=26% Similarity=0.264 Sum_probs=159.4
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC-cccccCCCccchhhhcc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR-EETDAHTSDVDSLEVNS 581 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~-~~i~~~~~~~~~~~~~~ 581 (788)
++..+|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+. .++.
T Consensus 29 ~~~~~~g--~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~------------- 93 (382)
T TIGR03415 29 EILDETG--LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVA------------- 93 (382)
T ss_pred HHHHhhC--CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccc-------------
Confidence 4445563 45689999999999999999999999999999999999999999999965421 1221
Q ss_pred cccccchhcccccC-cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 582 QNMNGELTRSMNRN-SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 582 ~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
.......... +++|+||||++.+|+ .|++||+.|+.... +. .....
T Consensus 94 ----~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~------------g~----------------~~~~~ 141 (382)
T TIGR03415 94 ----NCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ------------GM----------------PEAER 141 (382)
T ss_pred ----cCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc------------CC----------------CHHHH
Confidence 0000011112 357999999999997 69999998852100 00 00001
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.+.+.++++.+++..+.+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+++.|.+
T Consensus 142 ~~~a~e~le~vgL~~~~~---------~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~ 212 (382)
T TIGR03415 142 RKRVDEQLELVGLAQWAD---------KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA 212 (382)
T ss_pred HHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 235667788887754332 34567999999999999999999999999999999999999999998854
Q ss_pred -cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.++|+|+|||+++. .++||+|++|++|+.
T Consensus 213 ~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 213 KLNKTIIFVSHDLDEALKIGNRIAIMEGGRI 243 (382)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999876 478999999999864
No 242
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=334.16 Aligned_cols=208 Identities=25% Similarity=0.288 Sum_probs=159.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 10 ~l~i~~v~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 83 (264)
T PRK14243 10 VLRTENLNVYYG--SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD---- 83 (264)
T ss_pred EEEEeeeEEEEC--CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc----
Confidence 699999999996 3579999999999999999999999999999999999986 48999999643321000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|++|++.+|+.|+.||+.++.......
T Consensus 84 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~------------------------- 121 (264)
T PRK14243 84 -----------------VDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYK------------------------- 121 (264)
T ss_pred -----------------cChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcc-------------------------
Confidence 01113356799999999999889999998753110000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
....+++.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 122 ----~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 192 (264)
T PRK14243 122 ----GDMDELVERSLRQAALWDEVK-----DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE 192 (264)
T ss_pred ----hHHHHHHHHHHHHhCchhhHH-----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 001123344455554421111 01234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEcc
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRIST 762 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~ 762 (788)
.|++ .++|+|++||+++. ..+||++++|++
T Consensus 193 ~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~ 225 (264)
T PRK14243 193 LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNV 225 (264)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 8875 46899999999865 578999999984
No 243
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-38 Score=332.82 Aligned_cols=215 Identities=25% Similarity=0.292 Sum_probs=165.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeec---cCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVK---DREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~---~~~~i~~~~~~ 573 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.++.
T Consensus 9 ~~i~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~----- 81 (257)
T PRK14246 9 DVFNISRLYLYIN--DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF----- 81 (257)
T ss_pred hheeeeeEEEecC--CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc-----
Confidence 4699999999996 467999999999999999999999999999999999999999988887542 111110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
..+....++.++|++|++.+|.+ |+.||+.++...... .+
T Consensus 82 ---------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~------------~~------------ 122 (257)
T PRK14246 82 ---------------QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI------------KE------------ 122 (257)
T ss_pred ---------------cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC------------CC------------
Confidence 00111345679999999999875 999999864210000 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+.+.++++.++++... ++.....+..||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 123 ---~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~ 194 (257)
T PRK14246 123 ---KREIKKIVEECLRKVGLWKEV-----YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194 (257)
T ss_pred ---HHHHHHHHHHHHHHcCCCccc-----hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 000012345666666654211 112234567799999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.+ .++|+|++||+.+.+ +.||++++|++|+.
T Consensus 195 ~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 195 LITELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230 (257)
T ss_pred HHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8875 479999999999876 78999999998864
No 244
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8e-38 Score=319.72 Aligned_cols=184 Identities=23% Similarity=0.348 Sum_probs=149.5
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.+.++||+|.|+.+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~----- 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF----- 77 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc-----
Confidence 47899999999853 5679999999999999999999999999999999999999 8999999964322111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
. ...++.++|++|++.+|. .|++||+.++...
T Consensus 78 ------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------------------- 110 (202)
T cd03233 78 ------------------A-EKYPGEIIYVSEEDVHFPTLTVRETLDFALRC---------------------------- 110 (202)
T ss_pred ------------------h-hhhcceEEEEecccccCCCCcHHHHHhhhhhh----------------------------
Confidence 1 123567999999998887 4999999764100
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
. ..++...||||||||++|||||+++|++|||||||++||+.+++.+.
T Consensus 111 ----------------~----------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 111 ----------------K----------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred ----------------c----------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence 0 01123459999999999999999999999999999999999999999
Q ss_pred HHHHh---c-CCEEEEEe-cCc-chhhcCCEEEEEccCCC
Q 040758 732 EQIEA---A-GITYISVG-HRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~-g~TvI~Ia-Hr~-~~~~~~D~Ilvl~~g~~ 765 (788)
+.+++ . +.|+|+++ |+. +..+.||++++|++|+.
T Consensus 159 ~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i 198 (202)
T cd03233 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198 (202)
T ss_pred HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEE
Confidence 98864 3 56766665 444 45678999999999864
No 245
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-38 Score=330.96 Aligned_cols=213 Identities=25% Similarity=0.253 Sum_probs=159.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+..+..
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~---- 77 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR---- 77 (252)
T ss_pred EEEEeeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc----
Confidence 589999999996 457999999999999999999999999999999999999874 899999643321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++.++|++|++.+|.. |+.||+.++.......
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~------------------------ 116 (252)
T PRK14272 78 -----------------VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR------------------------ 116 (252)
T ss_pred -----------------cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCC------------------------
Confidence 0011345679999999999974 9999997632100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+.+.+.++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 117 ---~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 188 (252)
T PRK14272 117 ---DRDHLMEVAERSLRGAALWDEVK-----DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188 (252)
T ss_pred ---CHHHHHHHHHHHHHHcCcchhhh-----hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 00000112233344443321110 0113446789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 189 ~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14272 189 DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225 (252)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999998765 57999999999875
No 246
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=6.5e-38 Score=333.95 Aligned_cols=209 Identities=23% Similarity=0.381 Sum_probs=160.4
Q ss_pred cEEEeeeEEEcCCC-------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTS-------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~-- 78 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP---LH-- 78 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEE---CC--
Confidence 59999999999521 2469999999999999999999999999999999999999999999996433 21
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.......++.++|+||++. ++. .|+.+|+.++..... ..
T Consensus 79 ------------------~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-----------~~--------- 120 (267)
T PRK15112 79 ------------------FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT-----------DL--------- 120 (267)
T ss_pred ------------------CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-----------CC---------
Confidence 0011122356999999985 443 488888865310000 00
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
......+++.++++.+++. ... .....+||||||||++|||||+++|++|||||||++||+.+
T Consensus 121 -------~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 121 -------EPEQREKQIIETLRQVGLLPDHA---------SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred -------CHHHHHHHHHHHHHHcCCChHHH---------hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 0001123566778877763 221 22356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
...+.+.|.+ .|+|+|++||+++.+. .||++++|++|+.
T Consensus 185 ~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i 228 (267)
T PRK15112 185 RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEV 228 (267)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999988864 3899999999987764 6999999999865
No 247
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-37 Score=333.13 Aligned_cols=209 Identities=23% Similarity=0.278 Sum_probs=160.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
.+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+..+..
T Consensus 19 ~~l~~~nl~~~~~--~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~--- 93 (274)
T PRK14265 19 SVFEVEGVKVFYG--GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ--- 93 (274)
T ss_pred ceEEEeeEEEEeC--CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc---
Confidence 4799999999996 35799999999999999999999999999999999999863 6999999654321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....+++.|+|+||++.+|+.|+.||+.++.......
T Consensus 94 ------------------~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~------------------------ 131 (274)
T PRK14265 94 ------------------INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYK------------------------ 131 (274)
T ss_pred ------------------chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCch------------------------
Confidence 01113456799999999999889999998752110000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
...++.+.++++.+++...+. +.....+..||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 132 -----~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~ 201 (274)
T PRK14265 132 -----GNLDELVEDSLRRAAIWEEVK-----DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVE 201 (274)
T ss_pred -----HHHHHHHHHHHHHcccchhhH-----HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH
Confidence 001123344555554421110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|.+ +++|+|++||+++.+ +.||++++|++
T Consensus 202 ~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 235 (274)
T PRK14265 202 ELCLELKEQYTIIMVTHNMQQASRVADWTAFFNT 235 (274)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEec
Confidence 99875 478999999998755 68999999984
No 248
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-38 Score=332.36 Aligned_cols=211 Identities=24% Similarity=0.301 Sum_probs=161.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++||+++|+ ++++++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+..+.
T Consensus 6 ~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 79 (259)
T PRK14260 6 PAIKVKDLSFYYN--TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP---- 79 (259)
T ss_pred ceEEEEEEEEEEC--CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc----
Confidence 3699999999996 35699999999999999999999999999999999999985 489999964432110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++++++|++|++.+|+.|++||+.++..... ..
T Consensus 80 -----------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~------------~~------------ 118 (259)
T PRK14260 80 -----------------RININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA------------KL------------ 118 (259)
T ss_pred -----------------ccchHhhhhheEEEecccccCCccHHHHHHHHHHHhc------------CC------------
Confidence 0011234567999999999999999999976421000 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+.+.++++.+++...+. +.....+..||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 119 ---~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 190 (259)
T PRK14260 119 ---PQADLDEIVESALKGAALWQEVK-----DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE 190 (259)
T ss_pred ---CHHHHHHHHHHHHHHcCCcchhh-----hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 00001123445666665532111 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|++ .++|+|++||+++.+ +.||++++|++
T Consensus 191 ~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 191 ELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 98865 478999999998765 68999999973
No 249
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=6.5e-38 Score=318.39 Aligned_cols=176 Identities=27% Similarity=0.422 Sum_probs=150.0
Q ss_pred cEEEeeeEEEcCCC----CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPTS----KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~~----~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~G~I~~~~~~~~~i~~~~ 571 (788)
.|+++||+|+|++. ++++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|. ++.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~---~~~--- 76 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLD--- 76 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE---eCc---
Confidence 48999999999742 257999999999999999999999999999999999999 999999999543 331
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. ...++.++|++|++.+|. .|++||+.++..
T Consensus 77 -------------------~-~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---------------------------- 108 (194)
T cd03213 77 -------------------K-RSFRKIIGYVPQDDILHPTLTVRETLMFAAK---------------------------- 108 (194)
T ss_pred -------------------h-HhhhheEEEccCcccCCCCCcHHHHHHHHHH----------------------------
Confidence 0 123567999999999886 499999864210
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
+ ..||||||||++|||||+++|+++||||||++||+.+.+.+
T Consensus 109 ----------------~----------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 109 ----------------L----------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred ----------------h----------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 0 03999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
.+.|++ +|+|+|++||+++ ..+.||++++|++|+.
T Consensus 151 ~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 151 MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred HHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 998864 4899999999985 4468999999999853
No 250
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.6e-38 Score=332.52 Aligned_cols=219 Identities=22% Similarity=0.346 Sum_probs=165.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.....
T Consensus 4 ~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~------ 75 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG------ 75 (262)
T ss_pred EEEEeeEEEEeC--CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc------
Confidence 699999999996 467999999999999999999999999999999999999986 499999654321100
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
. ........++.++|+||++.+|. .|+.||+.++..... ..... . ..
T Consensus 76 -------~-----~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~----~-~~------------- 123 (262)
T PRK09984 76 -------R-----LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGST--PFWRT----C-FS------------- 123 (262)
T ss_pred -------c-----cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccc--cchhh----h-cc-------------
Confidence 0 00011123567999999999887 599999987532110 00000 0 00
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
........++.++++.+++.... ...+..||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 124 ~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 194 (262)
T PRK09984 124 WFTREQKQRALQALTRVGMVHFA---------HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194 (262)
T ss_pred cccHHHHHHHHHHHHHcCCHHHH---------hCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHH
Confidence 00001123567778877765332 234567999999999999999999999999999999999999999998
Q ss_pred HHh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|++||+++. .+.||+|++|++|+.
T Consensus 195 l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 864 38999999999975 578999999999864
No 251
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=8.7e-38 Score=345.59 Aligned_cols=201 Identities=24% Similarity=0.337 Sum_probs=157.7
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQ 582 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~ 582 (788)
|++++|++ +. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~-------------- 65 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR-------------- 65 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCc--------------
Confidence 78999953 33 5 999999999999999999999999999999999999999999654321110
Q ss_pred ccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChH
Q 040758 583 NMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD 661 (788)
Q Consensus 583 ~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 661 (788)
........++.++||+|++.+|.. |++||+.|+..... .....+
T Consensus 66 -----~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~------------------------------~~~~~~ 110 (354)
T TIGR02142 66 -----KGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR------------------------------PSERRI 110 (354)
T ss_pred -----cccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC------------------------------hhHHHH
Confidence 000011235679999999999964 99999987532100 000123
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----c
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----A 737 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~ 737 (788)
.+.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++ .
T Consensus 111 ~~~~~l~~~gL~~~~---------~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 111 SFERVIELLGIGHLL---------GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred HHHHHHHHcCChhHh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 466777777765433 234677999999999999999999999999999999999999999988864 3
Q ss_pred CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 738 GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 738 g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 182 g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 182 GIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 89999999998765 67999999999964
No 252
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-37 Score=332.24 Aligned_cols=207 Identities=22% Similarity=0.297 Sum_probs=159.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~i~--------- 72 (272)
T PRK15056 6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ---PTR--------- 72 (272)
T ss_pred eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---EhH---------
Confidence 5999999999963 467999999999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc---CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM---VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l---f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. ...++.++|+||++.+ +..++++|+.++.... . +.. ..
T Consensus 73 -------------~-~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~----------~~~-------------~~ 114 (272)
T PRK15056 73 -------------Q-ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGH-M----------GWL-------------RR 114 (272)
T ss_pred -------------H-hhccceEEEeccccccccCCCcchhhheecccccc-c----------ccc-------------cC
Confidence 0 0112459999999865 3457889887642110 0 000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|
T Consensus 115 ~~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L 185 (272)
T PRK15056 115 AKKRDRQIVTAALARVDMVEFR---------HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185 (272)
T ss_pred CCHHHHHHHHHHHHHcCChhHh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 0001123455677777765332 2345679999999999999999999999999999999999999999988
Q ss_pred Hh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++. .+.||+++.+ +|+.
T Consensus 186 ~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i 219 (272)
T PRK15056 186 RELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTV 219 (272)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEE
Confidence 64 58999999999865 5789999877 6764
No 253
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-37 Score=331.39 Aligned_cols=211 Identities=22% Similarity=0.317 Sum_probs=161.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++||+++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 6 ~~l~~~nl~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~---- 79 (261)
T PRK14258 6 PAIKVNNLSFYYD--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER---- 79 (261)
T ss_pred ceEEEeeEEEEeC--CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc----
Confidence 3699999999996 346999999999999999999999999999999999999986 79998854321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
..+....++.++|++|++.+|..|++||+.++.... +..
T Consensus 80 -----------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~------------~~~------------ 118 (261)
T PRK14258 80 -----------------RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIV------------GWR------------ 118 (261)
T ss_pred -----------------ccchHHhhccEEEEecCCccCcccHHHHHHHHHHhc------------CCC------------
Confidence 001123456799999999999999999997631100 000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+.+.++++.+++...+.. .....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 119 ---~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~ 190 (261)
T PRK14258 119 ---PKLEIDDIVESALKDADLWDEIKH-----KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE 190 (261)
T ss_pred ---cHHHHHHHHHHHHHHcCCcchhhh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 000011335566776665321110 123456789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|++ .|+|+|+|||+++.+ +.||+|++|++
T Consensus 191 ~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 191 SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 88864 489999999998765 68999999998
No 254
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-37 Score=341.67 Aligned_cols=220 Identities=20% Similarity=0.249 Sum_probs=163.4
Q ss_pred cEEEeeeEEEcCC--CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPT--SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~--~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~----p~~G~I~~~~~~~~~i~~~~ 571 (788)
.|+++||+++|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+.....
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~--- 79 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS--- 79 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC---
Confidence 5899999999963 23469999999999999999999999999999999999986 58999999654322211
Q ss_pred Cccchhhhcccccccchhcccc-cCcceEEEEcccccc--C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMN-RNSRGVFFLPQRPYM--V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~l--f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
..... ..++.|+||||++.. + ..|+.+|+..+...... .+. .
T Consensus 80 -----------------~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~---------~~~--~------ 125 (330)
T PRK15093 80 -----------------PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTY---------KGR--W------ 125 (330)
T ss_pred -----------------HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhc---------ccc--c------
Confidence 00111 123579999999963 3 35899888532000000 000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
. .......+++.++|+.+++..... .....+.+|||||||||+|||||+.+|++||||||||+||+.+.
T Consensus 126 ----~-~~~~~~~~~~~~~L~~~gL~~~~~------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~ 194 (330)
T PRK15093 126 ----W-QRFGWRKRRAIELLHRVGIKDHKD------AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQ 194 (330)
T ss_pred ----c-ccHHHHHHHHHHHHHHCCCCChHH------HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHH
Confidence 0 000001245678888888753211 12345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|++ .|.|+|+|||+++.+ ++||+|++|++|+.
T Consensus 195 ~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 195 AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999988864 389999999999877 67999999999865
No 255
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-37 Score=312.72 Aligned_cols=207 Identities=24% Similarity=0.419 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+++++||+..|+ +..+|+++||++++||+++|+|+||+|||||+|.|+|+.+|.+|+|.++|.|....
T Consensus 3 mL~v~~l~~~YG--~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~---------- 70 (237)
T COG0410 3 MLEVENLSAGYG--KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL---------- 70 (237)
T ss_pred ceeEEeEeeccc--ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC----------
Confidence 689999999996 46799999999999999999999999999999999999999999999965544332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.+.+..|..|+||||.-.+|.. ||+||+..|......+. ..
T Consensus 71 ------------p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~--------------------------~~ 112 (237)
T COG0410 71 ------------PPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE--------------------------AQ 112 (237)
T ss_pred ------------CHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc--------------------------cc
Confidence 1334567889999999999975 99999997643211000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+..+.+ . +....++.+|||||||.+||||||+.+|++|+|||||.+|-|.-.++|++.+++
T Consensus 113 ~~~~e~v~~lFP~L--k---------er~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 113 ERDLEEVYELFPRL--K---------ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred cccHHHHHHHChhH--H---------HHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence 01123333333321 1 112456788999999999999999999999999999999999999999998864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|.||+++-++... .+.+||.++|++|+.
T Consensus 182 l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gri 215 (237)
T COG0410 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRI 215 (237)
T ss_pred HHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEE
Confidence 37799999999765 578999999999975
No 256
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.8e-38 Score=350.96 Aligned_cols=214 Identities=28% Similarity=0.380 Sum_probs=168.8
Q ss_pred CCcEEEeeeEEEcCCC---------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc
Q 040758 496 QKLLDIEDLTLKTPTS---------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE 566 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~---------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~ 566 (788)
...++++||++.|... ...+++||||++++||++||||+||||||||.|+|+|+.+|++|+|.++|.+ .+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cc
Confidence 4578999999999731 2357999999999999999999999999999999999999999999997655 22
Q ss_pred cccCCCccchhhhcccccccchhcccccCcceEEEEccccccC---CCCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV---LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 567 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf---~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
++ .....+.|+.+-+|+|||+-. ..||.++|.-+-... .
T Consensus 357 ~~--------------------~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~---------------~--- 398 (539)
T COG1123 357 LT--------------------GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH---------------G--- 398 (539)
T ss_pred cc--------------------cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh---------------c---
Confidence 21 012234567788999999743 359998886532100 0
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
........+.+.+.++.+++.. +....++.+||||||||+||||||+.+|++||+|||||+||
T Consensus 399 ---------~~~~~~~~~rv~~ll~~VgL~~--------~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 399 ---------GGSGAERRARVAELLELVGLPP--------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred ---------ccchHHHHHHHHHHHHHcCCCH--------HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 0000112235777888888763 11245678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 724 EANEAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 724 ~~se~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.+.+.|.+.|++ .|.|.|+||||+.+++ .||||.||.+|+.
T Consensus 462 vsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 462 VSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 9999999998864 5999999999999875 6999999999975
No 257
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-37 Score=318.77 Aligned_cols=195 Identities=33% Similarity=0.360 Sum_probs=158.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~--------- 67 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---ID--------- 67 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe---Cc---------
Confidence 489999999996 3579999999999999999999999999999999999999999999996432 21
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. ..++.++|++|++.++ ..|++||+.+.....
T Consensus 68 -------------~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-------------------------------- 101 (207)
T PRK13539 68 -------------DP-DVAEACHYLGHRNAMKPALTVAENLEFWAAFL-------------------------------- 101 (207)
T ss_pred -------------ch-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc--------------------------------
Confidence 00 1355699999988776 579999997531100
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++....+ .....||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 102 GGEELDIAAALEAVGLAPLAH---------LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred CCcHHHHHHHHHHcCCHHHHc---------CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011234667777777654322 23457999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 737 ---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.|+|+|++||+.+.+.. |+++.++.
T Consensus 173 ~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 173 HLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred HHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 58999999999988776 99988854
No 258
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.3e-37 Score=329.25 Aligned_cols=195 Identities=24% Similarity=0.319 Sum_probs=155.9
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 37 ~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------- 98 (282)
T cd03291 37 DNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------- 98 (282)
T ss_pred CCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------
Confidence 456999999985 24699999999999999999999999999999999999999999998731
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.|+|++|++.+|+.|++||+.++.....
T Consensus 99 ----------------------~i~yv~q~~~l~~~tv~enl~~~~~~~~------------------------------ 126 (282)
T cd03291 99 ----------------------RISFSSQFSWIMPGTIKENIIFGVSYDE------------------------------ 126 (282)
T ss_pred ----------------------EEEEEeCcccccccCHHHHhhcccccCH------------------------------
Confidence 2899999999999999999987532100
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.++.+.++.+++...... +.++++. .+.+..||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 127 -----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 127 -----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred -----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 011112222222221111 1334443 456778999999999999999999999999999999999999988875
Q ss_pred H-Hh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 I-EA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L-~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ +. .+.|+|+|||+++.+..||++++|++|+.
T Consensus 202 ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i 236 (282)
T cd03291 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236 (282)
T ss_pred HHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEE
Confidence 4 32 58999999999988888999999999864
No 259
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-37 Score=328.57 Aligned_cols=207 Identities=24% Similarity=0.219 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.+.+++++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 8 ~~~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~---- 81 (261)
T PRK14263 8 VMDCKLDKIFYG--NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG---- 81 (261)
T ss_pred eEEEEeEEEEeC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc----
Confidence 489999999995 46799999999999999999999999999999999999987 7999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|+||++.+|..|+.||+.++......
T Consensus 82 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-------------------------- 118 (261)
T PRK14263 82 -----------------VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-------------------------- 118 (261)
T ss_pred -----------------cchHhhhhceEEEecCCccccccHHHHHHHHHhhcCc--------------------------
Confidence 0111345679999999999999999999875211000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+++.++++.+++..... +...+.+.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 119 ---~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~ 190 (261)
T PRK14263 119 ---KGDLGDRVKHALQGAALWDEVK-----DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190 (261)
T ss_pred ---hHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 0001234566777766542211 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEc
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRIS 761 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~ 761 (788)
.|++ +++|+|+|||+++. .++||++++|+
T Consensus 191 ~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 191 LMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9875 57899999999875 47899999996
No 260
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=329.73 Aligned_cols=216 Identities=23% Similarity=0.272 Sum_probs=164.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+.....
T Consensus 14 ~~~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~-- 89 (265)
T PRK14252 14 QQKSEVNKLNFYYG--GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS-- 89 (265)
T ss_pred CceEEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc--
Confidence 45799999999996 35799999999999999999999999999999999999875 7999999653311000
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. ......+++.++|++|++.+|.+|++||+.++......
T Consensus 90 ---------------~--~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~------------------------ 128 (265)
T PRK14252 90 ---------------P--EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGV------------------------ 128 (265)
T ss_pred ---------------c--ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCC------------------------
Confidence 0 00111345679999999999999999999874210000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
......++.+.++++.+++.. ++.. .......||||||||++|||||+.+|+++||||||++||+.+...
T Consensus 129 ---~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 199 (265)
T PRK14252 129 ---KRRSILEERVENALRNAALWD------EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATAS 199 (265)
T ss_pred ---ChHHHHHHHHHHHHHHcCCch------hhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 000001233455555554421 1111 234567899999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|++ .++|+|+|||+++.+ ++||++++|++|+.
T Consensus 200 l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i 238 (265)
T PRK14252 200 IEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGEL 238 (265)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9998875 478999999998765 68999999999875
No 261
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.5e-37 Score=316.64 Aligned_cols=193 Identities=31% Similarity=0.371 Sum_probs=152.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (198)
T TIGR01189 1 LAARNLACSRG--ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ----------- 67 (198)
T ss_pred CEEEEEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc-----------
Confidence 47899999996 45799999999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ...++.++|++|++.++. .|+.||+.+..... .
T Consensus 68 ------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------------~ 102 (198)
T TIGR01189 68 ------------R-DEPHRNILYLGHLPGLKPELSALENLHFWAAIH--------------------------------G 102 (198)
T ss_pred ------------h-HHhhhheEEeccCcccccCCcHHHHHHHHHHHc--------------------------------C
Confidence 1 123467999999998886 69999997531000 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.....+.++++.++++...+ ....+||||||||++||||++++|++|||||||++||+.+...+.+.|.+
T Consensus 103 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 103 GAQRTIEDALAAVGLTGFED---------LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred CcHHHHHHHHHHcCCHHHhc---------CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 01234566777776654322 23567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhhcCCEEEE
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
.|+|+|++||+..... |++.+.
T Consensus 174 ~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 174 LARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred HhCCCEEEEEEccccccc-ceEEee
Confidence 5899999999975443 467654
No 262
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-37 Score=325.91 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~----------- 66 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL----------- 66 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC-----------
Confidence 468999999963 389999999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. ..++.++|++|++.+|. .|+.||+.++...... ...
T Consensus 67 ------------~--~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~----------------------------~~~ 104 (235)
T cd03299 67 ------------P--PEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV----------------------------DKK 104 (235)
T ss_pred ------------C--hhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC----------------------------CHH
Confidence 0 12456999999999985 6999999764211000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+||||||||++||||++.+|++++|||||++||+.+.+.+.+.|++
T Consensus 105 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 105 EIERKVLEIAEMLGIDHLLN---------RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175 (235)
T ss_pred HHHHHHHHHHHHcCChhHHh---------cCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 01234566777777654332 33567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||++..+ +.||++++|++|+.
T Consensus 176 ~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i 208 (235)
T cd03299 176 RKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL 208 (235)
T ss_pred HHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 289999999998764 57999999998864
No 263
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.9e-37 Score=327.70 Aligned_cols=214 Identities=25% Similarity=0.299 Sum_probs=159.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc--cccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE--TDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~--i~~~~~~~~ 575 (788)
.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------- 73 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELY------- 73 (253)
T ss_pred eEEEeeeEEEeC--CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccc-------
Confidence 599999999996 3568999999999999999999999999999999999999999999997654221 11
Q ss_pred hhhhcccccccchhccc-ccCcceEEEEcccccc--C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSM-NRNSRGVFFLPQRPYM--V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~-~~~r~~i~~v~Q~~~l--f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+.. .... +..++.++|++|++.+ + ..|+.+|+.+..... ..
T Consensus 74 -------~~~---~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~------------~~------------- 118 (253)
T TIGR02323 74 -------QLS---EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI------------GA------------- 118 (253)
T ss_pred -------cCC---HHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh------------cc-------------
Confidence 000 0000 0123569999999852 2 348888875320000 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.+.++.+++.. +.....+..||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 119 --~~~~~~~~~~~~~l~~l~l~~--------~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~ 188 (253)
T TIGR02323 119 --RHYGNIRAAAHDWLEEVEIDP--------TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188 (253)
T ss_pred --cchHHHHHHHHHHHHHcCCCh--------hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 000001234556677766531 0123446789999999999999999999999999999999999999998
Q ss_pred HHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|++ .|.|+|++||+.+.+. .||++++|++|+.
T Consensus 189 ~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 189 DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 88754 3899999999987764 7999999999875
No 264
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-37 Score=327.62 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+..+.
T Consensus 3 ~l~~~~v~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~----- 75 (250)
T PRK14266 3 RIEVENLNTYFD--DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP----- 75 (250)
T ss_pred EEEEEeEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc-----
Confidence 488999999996 3579999999999999999999999999999999999864 4899999964332110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......++.++|+||++.+|..|+.||+.++.......
T Consensus 76 ----------------~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~------------------------- 114 (250)
T PRK14266 76 ----------------AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGED------------------------- 114 (250)
T ss_pred ----------------cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCC-------------------------
Confidence 001113456799999999999999999998742110000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++++.+++...+.. ..+..+..||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 115 --~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~ 187 (250)
T PRK14266 115 --DEDFIEERVEESLKAAALWDEVKD-----KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187 (250)
T ss_pred --CHHHHHHHHHHHHHHcCCchhHHH-----HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 000011334555666655321110 1134467899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++. ...||++++|++|+.
T Consensus 188 ~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 188 LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred HHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 8875 57999999999864 567999999999865
No 265
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.4e-37 Score=326.07 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=158.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD----GRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p----~~G~I~~~~~~~~~i~~~~~~ 573 (788)
.|+++||+++| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++.
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~---~i~----- 72 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK---PVA----- 72 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe---ecc-----
Confidence 59999999999 2 4699999999999999999999999999999999999999 9999999543 221
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccc-cCC--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVL--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....++.++||+|++. .|. .|+.+|+.+... ..+
T Consensus 73 -----------------~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~------------~~~------------- 110 (254)
T PRK10418 73 -----------------PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL------------ALG------------- 110 (254)
T ss_pred -----------------ccccccceEEEEecCCccccCccccHHHHHHHHHH------------HcC-------------
Confidence 00112356999999984 343 477777643100 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
....++++.+.++.+++..... ..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 111 -----~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l 179 (254)
T PRK10418 111 -----KPADDATLTAALEAVGLENAAR------VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179 (254)
T ss_pred -----CChHHHHHHHHHHHcCCCChhh------hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence 0012245677788777653100 11344678999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|++||+++.+ .+||++++|++|+.
T Consensus 180 ~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 180 LDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219 (254)
T ss_pred HHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 988864 389999999998765 68999999999875
No 266
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-37 Score=314.84 Aligned_cols=174 Identities=25% Similarity=0.385 Sum_probs=148.2
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
.|+++|+++.|+++ ++++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|. ++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~---~~~----- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR---PLD----- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE---ehH-----
Confidence 58999999999742 257999999999999999999999999999999999986 489999999533 220
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
...++.++|++|++.+|.. |++||+.++..
T Consensus 75 -------------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~------------------------------ 105 (192)
T cd03232 75 -------------------KNFQRSTGYVEQQDVHSPNLTVREALRFSAL------------------------------ 105 (192)
T ss_pred -------------------HHhhhceEEecccCccccCCcHHHHHHHHHH------------------------------
Confidence 1234579999999988875 99999975210
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
+. .||||||||++|||||+.+|++|||||||++||+++...+.+
T Consensus 106 --------------~~----------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~ 149 (192)
T cd03232 106 --------------LR----------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149 (192)
T ss_pred --------------Hh----------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH
Confidence 00 399999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcc--hhhcCCEEEEEcc-CC
Q 040758 733 QIEA---AGITYISVGHRRT--LYDFHKRVLRIST-VD 764 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~-g~ 764 (788)
.|++ .|+|+|++||+++ ..+.||++++|++ |+
T Consensus 150 ~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 8864 4899999999987 3678999999998 65
No 267
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-37 Score=330.70 Aligned_cols=212 Identities=23% Similarity=0.330 Sum_probs=160.8
Q ss_pred cEEEeeeEEEcCC-------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPT-------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~-------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+|.|++ .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~-- 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN-- 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccC--
Confidence 5899999999973 1367999999999999999999999999999999999999999999999654321110
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccc--cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.......++.++|++|++. ++ ..|+.+|+.++.... .+.
T Consensus 81 ------------------~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~-----------~~~--------- 122 (268)
T PRK10419 81 ------------------RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-----------LSL--------- 122 (268)
T ss_pred ------------------hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh-----------ccC---------
Confidence 0011123567999999983 43 469999986421000 000
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
........+.+.++.+++. .. .+..+..||||||||++|||||+.+|++|||||||++||+.+
T Consensus 123 -------~~~~~~~~~~~~l~~~gl~~~~---------~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~ 186 (268)
T PRK10419 123 -------DKAERLARASEMLRAVDLDDSV---------LDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL 186 (268)
T ss_pred -------CHHHHHHHHHHHHHHcCCChhH---------hhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 0000112455666666553 11 134467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+..+.+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 187 QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230 (268)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999888753 389999999998876 57999999999864
No 268
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-38 Score=316.83 Aligned_cols=220 Identities=25% Similarity=0.370 Sum_probs=171.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++++++++|+ +-.+++|+||++++||+++|+|||||||||++|+|+|+|+|++|+|.++|.|...+.
T Consensus 4 lL~v~~l~k~FG--Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~--------- 72 (250)
T COG0411 4 LLEVRGLSKRFG--GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP--------- 72 (250)
T ss_pred eeeeccceeecC--CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC---------
Confidence 478999999995 577999999999999999999999999999999999999999999999655443331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+..|..|+--||.+-+|.+ |+.||+..+.....- ....+.. +. ..+..
T Consensus 73 -------------p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-----------~~~~l~~-~~----~~~~e 123 (250)
T COG0411 73 -------------PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-----------LSGLLGR-PR----ARKEE 123 (250)
T ss_pred -------------HHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-----------hhhhhcc-cc----chhhH
Confidence 223456789999999999976 999999875321100 0000000 00 00001
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....++..+.|+.+++.... ++...+||+|||.|+.|||||+.+|++|+||||.++|.+....++.+.+++
T Consensus 124 ~~~~e~A~~~Le~vgL~~~a---------~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~ 194 (250)
T COG0411 124 REARERARELLEFVGLGELA---------DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194 (250)
T ss_pred HHHHHHHHHHHHHcCCchhh---------cchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHH
Confidence 11234566778887776443 345677999999999999999999999999999999999999998887764
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|.|+++|-||+.++ .+||||+||+.|+..
T Consensus 195 i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred HHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 469999999999875 789999999999753
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.3e-37 Score=357.22 Aligned_cols=203 Identities=17% Similarity=0.347 Sum_probs=164.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------- 79 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT--------- 79 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999643321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+..+|||+|++.++.. |++||+.++....
T Consensus 80 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------------------------------- 114 (510)
T PRK15439 80 -------------PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR-------------------------------- 114 (510)
T ss_pred -------------HHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc--------------------------------
Confidence 001123469999999988875 9999998753110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 115 QASMQKMKQLLAALGCQLDL---------DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred hHHHHHHHHHHHHcCCCccc---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 00123466777777765332 233567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ .+||+|++|++|+.
T Consensus 186 ~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 186 LLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218 (510)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999975
No 270
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-38 Score=299.18 Aligned_cols=193 Identities=27% Similarity=0.410 Sum_probs=162.0
Q ss_pred CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 511 ~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
++.++|+++||++++||.++|+||||||||||+|.++-+.+|++|.+++.|++..+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~----------------------- 70 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL----------------------- 70 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc-----------------------
Confidence 467899999999999999999999999999999999999999999999965543333
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
..+.+|.+|+|+.|.|.||.+||.||+.||-.-. ..+.+...+.+.|+++
T Consensus 71 ~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r------------------------------~rr~dr~aa~~llar~ 120 (223)
T COG4619 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR------------------------------NRRPDRAAALDLLARF 120 (223)
T ss_pred ChHHHHHHHHHHHcCccccccchhhccccchHHh------------------------------ccCCChHHHHHHHHHc
Confidence 2335688899999999999999999999973211 1233556677788887
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEec
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AAGITYISVGH 746 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~----~~g~TvI~IaH 746 (788)
++++-. ...+..+||||||||+||+|-|.--|+||+|||||||||+.+.+.|.+.+. ++++.++-|||
T Consensus 121 ~l~~~~--------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTH 192 (223)
T COG4619 121 ALPDSI--------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITH 192 (223)
T ss_pred CCchhh--------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEec
Confidence 765310 134567799999999999999999999999999999999999999888774 47999999999
Q ss_pred Ccch-hhcCCEEEEEccCC
Q 040758 747 RRTL-YDFHKRVLRISTVD 764 (788)
Q Consensus 747 r~~~-~~~~D~Ilvl~~g~ 764 (788)
+..- ++++|+++-+..|.
T Consensus 193 d~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 193 DKDQAIRHADKVITLQPGH 211 (223)
T ss_pred ChHHHhhhhheEEEeccCc
Confidence 9765 88999999999885
No 271
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=358.89 Aligned_cols=211 Identities=18% Similarity=0.312 Sum_probs=164.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--------- 72 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG--------- 72 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 599999999996 457999999999999999999999999999999999999999999999644321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++||+|++.++.. |++||+.++...... .+. . ..
T Consensus 73 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~---------~~~---~------------~~ 115 (501)
T PRK10762 73 -------------PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNR---------FGR---I------------DW 115 (501)
T ss_pred -------------HHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccc---------cCc---c------------CH
Confidence 001124569999999988864 999999886321000 000 0 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 116 KKMYAEADKLLARLNLRFSSD---------KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred HHHHHHHHHHHHHcCCCCCcc---------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 001234567788777654322 33567999999999999999999999999999999999999999887754
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 187 l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i 219 (501)
T PRK10762 187 LKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219 (501)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 589999999998765 68999999999864
No 272
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=5.5e-37 Score=323.76 Aligned_cols=185 Identities=28% Similarity=0.452 Sum_probs=153.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---------------- 65 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------------- 65 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------------
Confidence 599999999996 35799999999999999999999999999999999999999999999731
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+..++|+||++.++. .|+.+|+.+..
T Consensus 66 ------------------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~--------------------------------- 94 (251)
T PRK09544 66 ------------------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP--------------------------------- 94 (251)
T ss_pred ------------------ccCEEEeccccccccccChhHHHHHhccc---------------------------------
Confidence 124999999998764 36777764321
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
....+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 95 --~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 163 (251)
T PRK09544 95 --GTKKEDILPALKRVQAGHLID---------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163 (251)
T ss_pred --cccHHHHHHHHHHcCChHHHh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 011244566777776654322 235679999999999999999999999999999999999999999888
Q ss_pred Hh---c-CCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 735 EA---A-GITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 735 ~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
.+ . |+|+|++||+++.+ +.||++++|++
T Consensus 164 ~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 164 DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 54 3 89999999999875 68999999964
No 273
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.8e-38 Score=323.50 Aligned_cols=212 Identities=24% Similarity=0.290 Sum_probs=168.5
Q ss_pred cEEEeeeEEEcCCCC----------------------ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 498 LLDIEDLTLKTPTSK----------------------ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~----------------------~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
.|+++||++-|+... ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 478888887774311 1247999999999999999999999999999999999999999
Q ss_pred eEEEeeccCcccccCCCccchhhhcccccccchhccccc-CcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHH
Q 040758 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAA 633 (788)
Q Consensus 556 ~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa 633 (788)
+|+++|.|...++ . ..++. .|+.+++|||...|+ +.||.||..||-.-.-+.
T Consensus 84 ~ilv~g~di~~~~------------~--------~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~------ 137 (386)
T COG4175 84 EILVDGKDIAKLS------------A--------AELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP------ 137 (386)
T ss_pred eEEECCcchhcCC------------H--------HHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC------
Confidence 9999765543332 1 11222 246699999999988 479999999985321110
Q ss_pred HhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 040758 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIV 713 (788)
Q Consensus 634 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iL 713 (788)
.....+...++|+.+|++.+. ..++++||||+||||.|||||..+|+||
T Consensus 138 ----------------------~~er~~~a~~~l~~VgL~~~~---------~~yp~eLSGGMqQRVGLARAla~~~~Il 186 (386)
T COG4175 138 ----------------------KAEREERALEALELVGLEGYA---------DKYPNELSGGMQQRVGLARALANDPDIL 186 (386)
T ss_pred ----------------------HHHHHHHHHHHHHHcCchhhh---------hcCcccccchHHHHHHHHHHHccCCCEE
Confidence 011224567888888876543 3457789999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcc-hhhcCCEEEEEccCCCC
Q 040758 714 LLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRT-LYDFHKRVLRISTVDQN 766 (788)
Q Consensus 714 iLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~~ 766 (788)
++|||+|||||--..++|+.|.+ .++|+|+|||+++ .++..|||..|++|+..
T Consensus 187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~iv 244 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIV 244 (386)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEE
Confidence 99999999999999999988743 5999999999985 57899999999999753
No 274
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3e-37 Score=320.22 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=158.0
Q ss_pred cEEEeeeEEEcCC----C-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC-cccccCC
Q 040758 498 LLDIEDLTLKTPT----S-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR-EETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~----~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~-~~i~~~~ 571 (788)
+|+++||+++|+. + ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.+. .++.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~--- 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA--- 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh---
Confidence 3789999999963 1 24699999999999999999999999999999999999999999999963210 1221
Q ss_pred Cccchhhhcccccccchhccccc-CcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
.. . ...... .++.++|++|++.++.. |++||+.++.... +.
T Consensus 78 ------~~-----~---~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------------~~----------- 120 (224)
T TIGR02324 78 ------QA-----S---PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER------------GV----------- 120 (224)
T ss_pred ------hc-----C---HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc------------CC-----------
Confidence 00 0 000001 23569999999988864 9999997531100 00
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
......+++.++++.+++.... ....+.+||||||||++|||||+.+|++|||||||++||+.+...
T Consensus 121 -----~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 121 -----PREAARARARELLARLNIPERL--------WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred -----CHHHHHHHHHHHHHHcCCchhh--------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0000123455667776664311 122466799999999999999999999999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEc
Q 040758 730 LYEQIEA---AGITYISVGHRRTLY-DFHKRVLRIS 761 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~ 761 (788)
+.+.|++ .|+|+|++||+.+.+ ..||+++.+.
T Consensus 188 l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 188 VVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9998864 489999999998876 5899999874
No 275
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=357.58 Aligned_cols=210 Identities=21% Similarity=0.318 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+.....
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~------- 75 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN------- 75 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC-------
Confidence 699999999996 45799999999999999999999999999999999999996 8999999654321110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....++.+|||||++.+|. .|++||+.++...... +. .
T Consensus 76 ---------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~~---~------------ 115 (506)
T PRK13549 76 ---------------IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPG----------GI---M------------ 115 (506)
T ss_pred ---------------HHHHHHCCeEEEEeccccCCCCcHHHHhhhccccccc----------CC---c------------
Confidence 00112456999999998886 4999999876321000 00 0
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++.... .....+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (506)
T PRK13549 116 DYDAMYLRAQKLLAQLKLDINP---------ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186 (506)
T ss_pred CHHHHHHHHHHHHHHcCCCCCc---------ccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0000123466778877765332 2335679999999999999999999999999999999999999999887
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 187 ~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 187 RDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred HHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 54 589999999998765 67999999999874
No 276
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-37 Score=355.93 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~---------- 71 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFA---------- 71 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC----------
Confidence 599999999996 35799999999999999999999999999999999999999999999964332110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++++|+||+|++.+|.. |+.||+.++...... +. . ..
T Consensus 72 ------------~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~----------~~---~------------~~ 114 (501)
T PRK11288 72 ------------STTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKG----------GI---V------------NR 114 (501)
T ss_pred ------------CHHHHHhCCEEEEEechhccCCCCHHHHHHhccccccc----------CC---C------------CH
Confidence 0011235679999999988875 999999885321000 00 0 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 115 RLLNYEAREQLEHLGVDIDP---------DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred HHHHHHHHHHHHHcCCCCCc---------CCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 00123566778877765322 234567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|+|+|+|||+++.+ .+||+|++|++|+..
T Consensus 186 ~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 186 LRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 589999999998765 679999999999753
No 277
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=4.1e-37 Score=314.01 Aligned_cols=175 Identities=29% Similarity=0.410 Sum_probs=144.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+..+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~-------- 70 (200)
T cd03217 1 LEIKDLHVSVG--GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP-------- 70 (200)
T ss_pred CeEEEEEEEeC--CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC--------
Confidence 46899999996 35799999999999999999999999999999999999 5899999999654322110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.....+..++|+||++.+|.+ |+++|+..
T Consensus 71 --------------~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~------------------------------------ 100 (200)
T cd03217 71 --------------PEERARLGIFLAFQYPPEIPGVKNADFLRY------------------------------------ 100 (200)
T ss_pred --------------HHHHhhCcEEEeecChhhccCccHHHHHhh------------------------------------
Confidence 001123459999999988765 44444300
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....||||||||++|||||+.+|+++||||||++||+.+...+.+.|.
T Consensus 101 --------------------------------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~ 148 (200)
T cd03217 101 --------------------------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148 (200)
T ss_pred --------------------------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 012499999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchhh--cCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYD--FHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~--~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++... .||++++|++|+.
T Consensus 149 ~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 149 KLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRI 183 (200)
T ss_pred HHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEE
Confidence 4 4899999999998776 7999999998754
No 278
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-37 Score=357.32 Aligned_cols=214 Identities=17% Similarity=0.248 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~--------- 73 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD--------- 73 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++||+|++.++.. |++||+.++...... . .+. ..+ ..
T Consensus 74 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~------~~~-~~~------------~~ 119 (510)
T PRK09700 74 -------------HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKK--V------CGV-NII------------DW 119 (510)
T ss_pred -------------HHHHHHCCeEEEeecccccCCCcHHHHhhhccccccc--c------ccc-ccc------------CH
Confidence 000123569999999988865 999999875321000 0 000 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 120 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (510)
T PRK09700 120 REMRVRAAMMLLRVGLKVDL---------DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190 (510)
T ss_pred HHHHHHHHHHHHHcCCCCCc---------ccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 00123466778877765332 234567999999999999999999999999999999999999999988764
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 191 l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 191 LRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999874
No 279
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-37 Score=331.97 Aligned_cols=226 Identities=23% Similarity=0.311 Sum_probs=166.1
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
+..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 43 ~~~l~i~nl~~~~~--~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~-- 118 (305)
T PRK14264 43 DAKLSVEDLDVYYG--DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG-- 118 (305)
T ss_pred CceEEEEEEEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc--
Confidence 34799999999996 3579999999999999999999999999999999999986 68999999654321100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
......++.++|++|++.+|+.|++||+.++........ .+... . .
T Consensus 119 -------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-------~~~~~---~-----~ 164 (305)
T PRK14264 119 -------------------VNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN-------TGLLA---R-----L 164 (305)
T ss_pred -------------------ccHHHHhhceEEEccCCccccccHHHHHHhHHhhccccc-------ccccc---c-----c
Confidence 011123567999999999999999999987521100000 00000 0 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
.+........+.+.++++.+++... +.. ....+.+||||||||++|||||+++|++|||||||++||+.+...
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~ 238 (305)
T PRK14264 165 LGRDDKDAEDELVERSLRQAALWDE------VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSK 238 (305)
T ss_pred cccCchHHHHHHHHHHHHHcCCchh------hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0000000112346667777665321 112 245567899999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchh-hcCCEE-EEEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLY-DFHKRV-LRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~-~~~D~I-lvl~~g~~ 765 (788)
+.+.|++ .++|+|++||+++.+ ..||++ ++|++|+.
T Consensus 239 l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 239 IEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 9999875 468999999998775 679997 56798864
No 280
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.2e-37 Score=313.27 Aligned_cols=181 Identities=22% Similarity=0.331 Sum_probs=139.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.. .. ...
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~-~~--------------------~~~ 62 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD-YS--------------------RKG 62 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc-cc--------------------ccc
Confidence 457999999999999999999999999999999999999999999999654321 00 001
Q ss_pred cccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHh
Q 040758 592 MNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED 669 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (788)
....++.++|++|++ .+|..|++||+.++....... .....+++.++++.
T Consensus 63 ~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~----------------------------~~~~~~~~~~~l~~ 114 (190)
T TIGR01166 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLS----------------------------EAEVERRVREALTA 114 (190)
T ss_pred hHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCCC----------------------------HHHHHHHHHHHHHH
Confidence 112356799999998 477889999998742100000 00012345667777
Q ss_pred cccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEec
Q 040758 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGH 746 (788)
Q Consensus 670 ~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaH 746 (788)
+++.... .....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++ .|+|+|+|||
T Consensus 115 ~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH 185 (190)
T TIGR01166 115 VGASGLR---------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185 (190)
T ss_pred cCchhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 7665332 234567999999999999999999999999999999999999999998864 5899999999
Q ss_pred Ccch
Q 040758 747 RRTL 750 (788)
Q Consensus 747 r~~~ 750 (788)
+++.
T Consensus 186 ~~~~ 189 (190)
T TIGR01166 186 DVDL 189 (190)
T ss_pred cccc
Confidence 9764
No 281
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=4.1e-37 Score=321.95 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=148.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +. ..
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---~~---------------------~~ 88 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV---PW---------------------KR 88 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE---cc---------------------cc
Confidence 4579999999999999999999999999999999999999999999996432 21 00
Q ss_pred cccCcceEEEEc-cccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHh
Q 040758 592 MNRNSRGVFFLP-QRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED 669 (788)
Q Consensus 592 ~~~~r~~i~~v~-Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (788)
....++.++|++ |++.++ ..|++||+.+..... +. ......+.+.+.++.
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~~~~~~~~~~~l~~ 140 (236)
T cd03267 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY------------DL----------------PPARFKKRLDELSEL 140 (236)
T ss_pred chhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc------------CC----------------CHHHHHHHHHHHHHH
Confidence 113456799997 666776 469999986531100 00 000011234455666
Q ss_pred cccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEe
Q 040758 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVG 745 (788)
Q Consensus 670 ~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~Ia 745 (788)
+++.... ......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+ .++|+|++|
T Consensus 141 ~gl~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 211 (236)
T cd03267 141 LDLEELL---------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211 (236)
T ss_pred cCChhHh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 5554322 223567999999999999999999999999999999999999999998864 378999999
Q ss_pred cCcchh-hcCCEEEEEccCCC
Q 040758 746 HRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 746 Hr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|+++.+ +.||++++|++|+.
T Consensus 212 H~~~~~~~~~d~i~~l~~G~i 232 (236)
T cd03267 212 HYMKDIEALARRVLVIDKGRL 232 (236)
T ss_pred cCHHHHHHhCCEEEEEeCCEE
Confidence 998765 67999999998854
No 282
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=8.3e-37 Score=322.52 Aligned_cols=214 Identities=24% Similarity=0.302 Sum_probs=159.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+.....
T Consensus 7 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~------- 77 (252)
T CHL00131 7 ILEIKNLHASVN--ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE------- 77 (252)
T ss_pred eEEEEeEEEEeC--CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-------
Confidence 699999999996 35799999999999999999999999999999999998 6899999999654322110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....+..++|++|++.++.+ |+.+|+.+........ .+. ...
T Consensus 78 ---------------~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~--------~~~-------------~~~ 121 (252)
T CHL00131 78 ---------------PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKF--------QGL-------------PEL 121 (252)
T ss_pred ---------------hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcc--------ccc-------------ccc
Confidence 000112358999999998875 8889886531100000 000 000
Q ss_pred CCCCChHHHHHHHHhccccc-ccccCCCccccccCCC-CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSS-VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~-~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++++.+++.. .. ..... .||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 122 ~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 192 (252)
T CHL00131 122 DPLEFLEIINEKLKLVGMDPSFL---------SRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192 (252)
T ss_pred cHHHHHHHHHHHHHHcCCchhhh---------ccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00001134556677766641 11 22233 499999999999999999999999999999999999999998
Q ss_pred HHHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|++||+.+.+. . ||++++|++|+.
T Consensus 193 ~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i 230 (252)
T CHL00131 193 GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKI 230 (252)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEE
Confidence 8864 4899999999988765 4 899999999865
No 283
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.2e-37 Score=323.30 Aligned_cols=215 Identities=25% Similarity=0.339 Sum_probs=161.6
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-C----CCceEEEeeccCcccccCC
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-D----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p----~~G~I~~~~~~~~~i~~~~ 571 (788)
++++|++..|+..+ ..+++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|...++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~--- 78 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS--- 78 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC---
Confidence 68899999987533 368999999999999999999999999999999999998 3 5799999766543331
Q ss_pred CccchhhhcccccccchhcccccC-cceEEEEccccccC-C--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPYMV-L--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf-~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
....+.+ .+.|++|||||.-- + .||.+++. +..+...- .
T Consensus 79 -----------------~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~------------E~l~~h~~---~----- 121 (316)
T COG0444 79 -----------------EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA------------EVLRLHGK---G----- 121 (316)
T ss_pred -----------------HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH------------HHHHHhhc---c-----
Confidence 0111122 35699999998521 1 25555442 11111000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
...+...+.+.+.|+.+++..-..+ ...++.+|||||||||.||-||+.+|++||.||||+|||..++
T Consensus 122 ------~~~~ea~~~a~~~L~~Vgi~~~~~~------~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 122 ------LSKKEAKERAIELLELVGIPDPERR------LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred ------hhhHHHHHHHHHHHHHcCCCCHHHH------HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 0001123467888999888643222 2456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++|.+.|++ .|.|+|+||||+.++ +.||||+||..|+.
T Consensus 190 aqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~i 232 (316)
T COG0444 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232 (316)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEE
Confidence 999998864 599999999999875 68999999998854
No 284
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=9.7e-37 Score=321.15 Aligned_cols=215 Identities=24% Similarity=0.305 Sum_probs=152.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+....+
T Consensus 1 ~i~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~------- 71 (248)
T PRK09580 1 MLSIKDLHVSVE--DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS------- 71 (248)
T ss_pred CeEEEEEEEEeC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC-------
Confidence 378999999996 35799999999999999999999999999999999999 4799999999654322110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....++.++|++|++.++.. |..+++.+....... .+... .+
T Consensus 72 ---------------~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~------------ 115 (248)
T PRK09580 72 ---------------PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS------YRGQE---PL------------ 115 (248)
T ss_pred ---------------HHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhc------ccccc---cc------------
Confidence 001123569999999987654 444443211000000 00000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCC-CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS-SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g-~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......+.+.+.++.+++.. ++. .... ..||||||||++|||||+++|++|||||||++||+.+...+.+.
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~------~~~--~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~ 187 (248)
T PRK09580 116 DRFDFQDLMEEKIALLKMPE------DLL--TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADG 187 (248)
T ss_pred hHHHHHHHHHHHHHHcCCCh------hhc--ccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 00000123445566555421 111 1122 36999999999999999999999999999999999999999987
Q ss_pred HHh---cCCEEEEEecCcchhhc--CCEEEEEccCCC
Q 040758 734 IEA---AGITYISVGHRRTLYDF--HKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~~~--~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|++||+++.... ||+|++|++|+.
T Consensus 188 l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 224 (248)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeE
Confidence 754 58999999999887764 899999999864
No 285
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-36 Score=309.81 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=150.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~l~~~~l~~~~~--~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~---~i~--------- 65 (195)
T PRK13541 1 MLSLHQLQFNIE--QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC---NIN--------- 65 (195)
T ss_pred CeEEEEeeEEEC--CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc---ccC---------
Confidence 378999999995 344555 99999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. . ++.++|++|++.+ +..|++||+.+.....
T Consensus 66 -------------~~-~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-------------------------------- 98 (195)
T PRK13541 66 -------------NI-A-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-------------------------------- 98 (195)
T ss_pred -------------hh-h-hhhEEeccCCcCCCccCCHHHHHHHHHHhc--------------------------------
Confidence 00 0 2348999998755 5679999997632110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
...+++.++++.++++... ...+.+||||||||++||||++++|++|||||||++||+.+...+.+.++
T Consensus 99 -~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 99 -NSAETLYAAIHYFKLHDLL---------DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVM 168 (195)
T ss_pred -ccHHHHHHHHHHcCCHhhh---------ccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0123445566666554322 23466799999999999999999999999999999999999999998885
Q ss_pred --hcCCEEEEEecCcchhhcCCEEE
Q 040758 736 --AAGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 736 --~~g~TvI~IaHr~~~~~~~D~Il 758 (788)
+.|+|+|++||+.+.++.+|.+.
T Consensus 169 ~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 169 KANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred HHhCCCEEEEEeCCccccchhheec
Confidence 26899999999999988888753
No 286
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-37 Score=297.96 Aligned_cols=201 Identities=25% Similarity=0.310 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
++.+++++.+|++..+.+|+|+|++|.+||.++++||||||||||+|+++||.+|+.|+|.+|| +.++
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~---r~i~--------- 70 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG---RRIE--------- 70 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC---Eecc---------
Confidence 4677899999986555699999999999999999999999999999999999999999999954 3332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
++ -..=|+|+|++-|++- ++.||+.||-.-.-+...
T Consensus 71 gP----------------gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~--------------------------- 107 (259)
T COG4525 71 GP----------------GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA--------------------------- 107 (259)
T ss_pred CC----------------CccceeEeccCccchhhHHHHHHHHHHHhcCCCHH---------------------------
Confidence 11 1124899999999985 999999997432211110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
...+...+.|..+|++... +.+.-+||||||||+.|||||..+|++|+||||++|||.-+.+.+|+.|-
T Consensus 108 -~R~~~a~q~l~~VgL~~~~---------~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 108 -QRREIAHQMLALVGLEGAE---------HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred -HHHHHHHHHHHHhCccccc---------ccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 0113345566777665321 33456799999999999999999999999999999999999999999874
Q ss_pred ---hcCCEEEEEecCcch-hhcCCEEEEEccC
Q 040758 736 ---AAGITYISVGHRRTL-YDFHKRVLRISTV 763 (788)
Q Consensus 736 ---~~g~TvI~IaHr~~~-~~~~D~Ilvl~~g 763 (788)
+.|+.+++|||+.+. +-.+++++||+.|
T Consensus 178 lw~~tgk~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred HHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence 369999999999764 4569999999876
No 287
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.3e-37 Score=342.01 Aligned_cols=213 Identities=21% Similarity=0.331 Sum_probs=168.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++++|+ +-++|+|+||++++||+.||+|+||||||||+|+|+|.|+|++|+|.++|+ ....
T Consensus 8 ll~~~~i~K~Fg--gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~---~~~~-------- 74 (500)
T COG1129 8 LLELRGISKSFG--GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK---PVAF-------- 74 (500)
T ss_pred eeeeecceEEcC--CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE---EccC--------
Confidence 589999999997 467999999999999999999999999999999999999999999999643 3310
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+.+.....|++|+||..|++. ||.|||.+|.....- .+..+ .
T Consensus 75 -----------~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~---------~g~id---------------~ 119 (500)
T COG1129 75 -----------SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRR---------FGLID---------------R 119 (500)
T ss_pred -----------CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccC---------CCccC---------------H
Confidence 01222345679999999999964 999999987643210 01000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
+.-.++..++|..+++.. + ......+||+||||.|+|||||..++++||||||||+|+....+.+++.++
T Consensus 120 ~~m~~~A~~~l~~lg~~~--------~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 120 KAMRRRARELLARLGLDI--------D-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred HHHHHHHHHHHHHcCCCC--------C-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 111234556677665541 1 234466799999999999999999999999999999999999988887765
Q ss_pred --hcCCEEEEEecCc-chhhcCCEEEEEccCCCCC
Q 040758 736 --AAGITYISVGHRR-TLYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 736 --~~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~ 767 (788)
++|.++|+||||+ +..+.||||.||.||+...
T Consensus 191 Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 191 LKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 4799999999998 4668999999999997543
No 288
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-37 Score=301.43 Aligned_cols=213 Identities=26% Similarity=0.339 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+.+|++++.. ++.+|+++||+++|||++||+||||||||||+|.|+|...|++|++.++|.+....
T Consensus 1 mi~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~---------- 68 (259)
T COG4559 1 MIRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW---------- 68 (259)
T ss_pred CeeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC----------
Confidence 478999999985 57799999999999999999999999999999999999999999999965443222
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+...+.+.-+++||+..| |.-|+.|-+.+|..... .+.
T Consensus 69 -------------~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~----------------------------~g~ 107 (259)
T COG4559 69 -------------PPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR----------------------------SGR 107 (259)
T ss_pred -------------CHHHHHHHhhhcccCcccccceEHHHHHHhcccccc----------------------------cCC
Confidence 122334557899999887 67899999988754310 011
Q ss_pred CCChHH--HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHH
Q 040758 657 KPSTDD--LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS------KPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 657 ~~~~~~--~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~------~p~iLiLDEpTSaLD~~se~ 728 (788)
.+.+++ ..++|..+++..+..+ ....|||||||||.+||+|.+ ++++|+||||||+||...+.
T Consensus 108 ~~~e~~~i~~~ala~~d~~~la~R---------~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~ 178 (259)
T COG4559 108 EPEEDERIAAQALAATDLSGLAGR---------DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178 (259)
T ss_pred CchhhHHHHHHHHHHcChhhhhcc---------chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHH
Confidence 112233 5577777766544333 245699999999999999986 45699999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCCe
Q 040758 729 HLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSNW 772 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~~ 772 (788)
.+++..++ .|..|++|-||+++. .|||||++|.+|+..-+..-|
T Consensus 179 ~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 98887664 789999999999875 699999999999875554444
No 289
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.5e-36 Score=299.83 Aligned_cols=156 Identities=26% Similarity=0.436 Sum_probs=130.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~---------- 68 (163)
T cd03216 1 LELRGITKRFG--GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS---------- 68 (163)
T ss_pred CEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC----------
Confidence 47899999996 357999999999999999999999999999999999999999999999543211100
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
..+..++.++|++|
T Consensus 69 ------------~~~~~~~~i~~~~q------------------------------------------------------ 82 (163)
T cd03216 69 ------------PRDARRAGIAMVYQ------------------------------------------------------ 82 (163)
T ss_pred ------------HHHHHhcCeEEEEe------------------------------------------------------
Confidence 00012234555443
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|++
T Consensus 83 ---------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 83 ---------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999998864
Q ss_pred -cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+. .+.||++++|++|+.
T Consensus 130 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 130 AQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999875 467999999998853
No 290
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=351.20 Aligned_cols=207 Identities=19% Similarity=0.342 Sum_probs=160.4
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 ~~nl~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------------ 66 (491)
T PRK10982 1 MSNISKSFP--GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS------------ 66 (491)
T ss_pred CCceEEEeC--CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC------------
Confidence 368999996 457999999999999999999999999999999999999999999999644321110
Q ss_pred ccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
.....++.++||||++.++. .|++||+.++..... +. .. .....
T Consensus 67 ----------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-----------~~--~~------------~~~~~ 111 (491)
T PRK10982 67 ----------SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK-----------GM--FV------------DQDKM 111 (491)
T ss_pred ----------HHHHHhCCEEEEecccccccCCCHHHHhhccccccc-----------cc--cc------------CHHHH
Confidence 01123456999999998775 599999987532100 00 00 00001
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.+++.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~l~~~~l~~~~---------~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 182 (491)
T PRK10982 112 YRDTKAIFDELDIDIDP---------RAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182 (491)
T ss_pred HHHHHHHHHHcCCCCCc---------cCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 23456677776664322 234677999999999999999999999999999999999999999888754
Q ss_pred cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 183 ~g~tvii~tH~~~~~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 183 RGCGIVYISHKMEEIFQLCDEITILRDGQW 212 (491)
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999964
No 291
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=359.51 Aligned_cols=213 Identities=24% Similarity=0.364 Sum_probs=164.3
Q ss_pred CcEEEeeeEEEcCCC---------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 497 KLLDIEDLTLKTPTS---------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~---------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
..|+++||++.|+.+ ...+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+....
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 469999999999621 24689999999999999999999999999999999999999999999965432211
Q ss_pred ccCCCccchhhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhh
Q 040758 568 DAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTS 644 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~ 644 (788)
. ......++++|+||||+++ ++. .|+.||+.++.... +.
T Consensus 392 ~--------------------~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~------------~~------ 433 (623)
T PRK10261 392 S--------------------PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH------------GL------ 433 (623)
T ss_pred C--------------------HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc------------CC------
Confidence 0 0011124567999999983 664 59999996531000 00
Q ss_pred hhhhhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 645 AQKLENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
.......+++.+.|+.+++. ... ..+..+|||||||||+|||||+.+|++||||||||+||
T Consensus 434 ---------~~~~~~~~~~~~~L~~~gL~~~~~---------~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 434 ---------LPGKAAAARVAWLLERVGLLPEHA---------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred ---------CCHHHHHHHHHHHHHHcCCCHHHh---------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 00000124566778877764 221 23467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 724 EANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 724 ~~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+...+.+.|++ .|.|+|+|||+++.+ .+||+|++|++|+.
T Consensus 496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999998853 489999999998765 67999999999875
No 292
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.6e-36 Score=316.37 Aligned_cols=187 Identities=24% Similarity=0.296 Sum_probs=146.4
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++. . .
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~----------------------~---~ 52 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGK---QIT----------------------E---P 52 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE---ECC----------------------C---C
Confidence 57999999999999999999999999999999999999999999543 221 0 0
Q ss_pred cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 596 SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
....+|++|++.+|. .|+.||+.++.... .. +. ......+.+.+.++.+++..
T Consensus 53 ~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~-~~---------~~----------------~~~~~~~~~~~~l~~~~l~~ 106 (230)
T TIGR01184 53 GPDRMVVFQNYSLLPWLTVRENIALAVDRV-LP---------DL----------------SKSERRAIVEEHIALVGLTE 106 (230)
T ss_pred ChhheEEecCcccCCCCCHHHHHHHHHHhc-cc---------CC----------------CHHHHHHHHHHHHHHcCCHH
Confidence 112489999999987 59999997641100 00 00 00001234566677766653
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcch
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTL 750 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~ 750 (788)
.. .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+ .|+|+|+|||+++.
T Consensus 107 ~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 177 (230)
T TIGR01184 107 AA---------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDE 177 (230)
T ss_pred HH---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 22 234567999999999999999999999999999999999999999998864 38999999999876
Q ss_pred -hhcCCEEEEEccCCC
Q 040758 751 -YDFHKRVLRISTVDQ 765 (788)
Q Consensus 751 -~~~~D~Ilvl~~g~~ 765 (788)
.+.||++++|++|+.
T Consensus 178 ~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 178 ALLLSDRVVMLTNGPA 193 (230)
T ss_pred HHHhcCEEEEEeCCcE
Confidence 468999999999975
No 293
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=8.5e-37 Score=306.48 Aligned_cols=171 Identities=35% Similarity=0.472 Sum_probs=136.9
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~------------ 66 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL------------ 66 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC------------
Confidence 47899999963 5799999999999999999999999999999999999999999999964432111
Q ss_pred cccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
+...+++.++|++| +
T Consensus 67 -----------~~~~~~~~i~~~~q--------~---------------------------------------------- 81 (180)
T cd03214 67 -----------SPKELARKIAYVPQ--------A---------------------------------------------- 81 (180)
T ss_pred -----------CHHHHHHHHhHHHH--------H----------------------------------------------
Confidence 01122345888888 0
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
++.+++... ....+..||||||||++|||||+.+|+++||||||++||+++...+.+.|++
T Consensus 82 -------l~~~gl~~~---------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 82 -------LELLGLAHL---------ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred -------HHHcCCHhH---------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 011111110 0123456999999999999999999999999999999999999999988864
Q ss_pred c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ ++|+|++||+++.+ +.||++++|++|+.
T Consensus 146 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3 89999999998875 78999999998864
No 294
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-36 Score=349.30 Aligned_cols=211 Identities=16% Similarity=0.240 Sum_probs=162.2
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 2 l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~-------- 71 (500)
T TIGR02633 2 LEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN-------- 71 (500)
T ss_pred EEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC--------
Confidence 78999999996 45799999999999999999999999999999999999997 7999999644321110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.....++.++||||++.++.. |+.||+.++....... +. . .
T Consensus 72 --------------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~---------~~---~------------~ 113 (500)
T TIGR02633 72 --------------IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG---------GR---M------------A 113 (500)
T ss_pred --------------HHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc---------cc---c------------C
Confidence 001124569999999988864 9999998753210000 00 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++..... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~--------~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (500)
T TIGR02633 114 YNAMYLRAKNLLRELQLDADNV--------TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185 (500)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc--------cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0001234566777776643210 12356799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ ..||+|++|++|+.
T Consensus 186 ~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 186 DLKAHGVACVYISHKLNEVKAVCDTICVIRDGQH 219 (500)
T ss_pred HHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeE
Confidence 4 589999999998765 67999999999874
No 295
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.6e-36 Score=350.06 Aligned_cols=198 Identities=22% Similarity=0.231 Sum_probs=156.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~---------- 70 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL---------- 70 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC----------
Confidence 589999999996 34699999999999999999999999999999999999999999999854321111
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc--C-------CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM--V-------LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL 648 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l--f-------~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~ 648 (788)
+....++.++|++|++.+ + ..|+++|+.++.
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 110 (490)
T PRK10938 71 -------------SFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------------------------- 110 (490)
T ss_pred -------------CHHHHHHHhceeccCcchhhcccchhhccccHHHhcccch---------------------------
Confidence 001123459999998753 1 235666554320
Q ss_pred hhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 649 ENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
...+++.++++.++++...+ ....+||||||||++|||||+.+|++|||||||++||+.+.+
T Consensus 111 ---------~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 172 (490)
T PRK10938 111 ---------KDPARCEQLAQQFGITALLD---------RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172 (490)
T ss_pred ---------hHHHHHHHHHHHcCCHhhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 01234566777776654322 345679999999999999999999999999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 729 HLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++ .|+|+|+|||+++.+ +.||++++|++|+.
T Consensus 173 ~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 173 QLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL 213 (490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 99998864 489999999998755 68999999999974
No 296
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=339.45 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=165.3
Q ss_pred cEEEeeeEEEcCCCCc--cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPTSKA--TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG----RGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~--~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~----~G~I~~~~~~~~~i~~~~ 571 (788)
.++++|++..|...+. .+++|+||+|.+||++||||+|||||||+.+.|+|+.++. +|+|.++|.|...+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~--- 81 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS--- 81 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC---
Confidence 6999999999865433 4899999999999999999999999999999999999988 899999765433321
Q ss_pred CccchhhhcccccccchhcccccC-cceEEEEccccc-cCC--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPY-MVL--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~-lf~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
....+.. .+.|+||||+|. .++ -||.++|. ++.+..+-
T Consensus 82 -----------------~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~------------E~~~~h~~--------- 123 (539)
T COG1123 82 -----------------EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR------------EALRLHGK--------- 123 (539)
T ss_pred -----------------HHHHHHhccccEEEEecCchhhcCchhhHHHHHH------------HHHHHhcc---------
Confidence 1111222 356999999984 333 36665553 11111110
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
.......+++.+.|+.+++.+-..+ ..++.+||||||||+.||+||+.+|++||+||||+|||+.++
T Consensus 124 ------~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q 190 (539)
T COG1123 124 ------GSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190 (539)
T ss_pred ------ccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 0001123567888998888653221 346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++|.+.|++ .|.++|+|||+++++ ..||||+||.+|+.
T Consensus 191 ~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 191 AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 999998864 699999999999986 57999999999964
No 297
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=2.8e-36 Score=318.00 Aligned_cols=198 Identities=27% Similarity=0.309 Sum_probs=153.3
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|.+....
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~------------ 62 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAW------------ 62 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcC------------
Confidence 46777774 279999999999999999999999999999999999965 99999965432111
Q ss_pred cccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+...+++.++|+||++.++ ..|+++|+.++...... ...
T Consensus 63 -----------~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~-----------------------------~~~ 102 (248)
T PRK03695 63 -----------SAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTR-----------------------------TEA 102 (248)
T ss_pred -----------CHHHHhhheEEecccCccCCCccHHHHHHhcCccCCC-----------------------------cHH
Confidence 1112245699999998655 57999999875311000 000
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHHHHHHHH
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS-------KPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~-------~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
..+++.++++.+++.... ......||||||||++|||||+. +|++|||||||++||+.+...+.
T Consensus 103 ~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~ 173 (248)
T PRK03695 103 VASALNEVAEALGLDDKL---------GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD 173 (248)
T ss_pred HHHHHHHHHHHcCCHhHh---------cCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH
Confidence 123456677776664322 23456799999999999999997 77999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++ ..++||++++|++|+.
T Consensus 174 ~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i 211 (248)
T PRK03695 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKL 211 (248)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 88864 5899999999987 5578999999999975
No 298
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-36 Score=356.02 Aligned_cols=227 Identities=21% Similarity=0.275 Sum_probs=165.5
Q ss_pred CcEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.+|+++|+++.|+.+ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+..+- +.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~-----~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRR-----SR 85 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccc-----cc
Confidence 379999999999632 24699999999999999999999999999999999999999999999865321000 00
Q ss_pred chhhhcccccccchhcccccC-cceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
+. .++........... ++.||||+|+| .++. .|+.||+.++.... .+.
T Consensus 86 ~~-----~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~-----------~~~------------ 137 (623)
T PRK10261 86 QV-----IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH-----------QGA------------ 137 (623)
T ss_pred cc-----cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHh-----------cCC------------
Confidence 00 00000000011112 24699999998 5665 59999998741100 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+++.++|+.+++.... +.......+|||||||||+|||||+.+|++|||||||++||+.+.+.+
T Consensus 138 ----~~~~~~~~~~~~l~~~gL~~~~------~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l 207 (623)
T PRK10261 138 ----SREEAMVEAKRMLDQVRIPEAQ------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207 (623)
T ss_pred ----CHHHHHHHHHHHHHHCCCCChh------hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHH
Confidence 0001124567778888774210 011345678999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.+.|++ .|+|+|+|||+++.+ .+||||++|++|+..
T Consensus 208 ~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 888764 389999999998765 689999999999763
No 299
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=2.7e-36 Score=313.32 Aligned_cols=194 Identities=22% Similarity=0.248 Sum_probs=148.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
+.++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 23 l~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~---~~---------- 87 (224)
T cd03220 23 LGILGRKGEVG--EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV---SS---------- 87 (224)
T ss_pred hhhhhhhhhcC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---ch----------
Confidence 77889999995 4679999999999999999999999999999999999999999999995432 10
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
......+ +.++.|++||+.++....... ...
T Consensus 88 ---------------~~~~~~~------~~~~~tv~enl~~~~~~~~~~----------------------------~~~ 118 (224)
T cd03220 88 ---------------LLGLGGG------FNPELTGRENIYLNGRLLGLS----------------------------RKE 118 (224)
T ss_pred ---------------hhccccc------CCCCCcHHHHHHHHHHHcCCC----------------------------HHH
Confidence 0000111 123569999997642100000 000
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 119 ~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~ 189 (224)
T cd03220 119 IDEKIDEIIEFSELGDFI---------DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189 (224)
T ss_pred HHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 112345566665554322 233567999999999999999999999999999999999999999988864
Q ss_pred -cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+.+.+ .+||++++|++|+.
T Consensus 190 ~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 579999999998765 67999999998863
No 300
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-36 Score=347.98 Aligned_cols=214 Identities=21% Similarity=0.334 Sum_probs=162.3
Q ss_pred cEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++||+++|+. +++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.....
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~------- 331 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN------- 331 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC-------
Confidence 6999999999953 23569999999999999999999999999999999999999 59999999643321100
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....++.++||+|++ .++. .|+.||+.++.... .. . .
T Consensus 332 ---------------~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-~~---------~-------------~ 373 (506)
T PRK13549 332 ---------------PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR-FT---------G-------------G 373 (506)
T ss_pred ---------------HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh-hc---------c-------------C
Confidence 0012245699999996 3554 59999998752100 00 0 0
Q ss_pred ccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
+........+++.+.++.+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+
T Consensus 374 ~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 374 SRIDDAAELKTILESIQRLKVKTASP---------ELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred cccChHHHHHHHHHHHHhcCccCCCc---------ccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 0000000123466777777663 221 334677999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 445 ~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i 483 (506)
T PRK13549 445 YKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483 (506)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 888753 699999999998765 68999999999875
No 301
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.2e-36 Score=348.86 Aligned_cols=215 Identities=24% Similarity=0.356 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+++|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-- 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS-- 82 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC--
Confidence 69999999999632 25799999999999999999999999999999999999987 7999999654322110
Q ss_pred CCccchhhhcccccccchhcccccC-cceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
....... ++.+|||||++. ++. .|+.+|+.++.... .+.
T Consensus 83 ------------------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------- 125 (529)
T PRK15134 83 ------------------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH-----------RGM-------- 125 (529)
T ss_pred ------------------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh-----------cCC--------
Confidence 0000112 246999999985 443 48888875421000 000
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
......+++.++++.+++..... .......+||||||||++|||||+.+|++||||||||+||+.+
T Consensus 126 --------~~~~~~~~~~~~l~~~gl~~~~~------~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~ 191 (529)
T PRK15134 126 --------RREAARGEILNCLDRVGIRQAAK------RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191 (529)
T ss_pred --------CHHHHHHHHHHHHHHCCCCChHH------HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH
Confidence 00011245677888877753110 0123467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
...+.+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 192 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 192 QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 9999988864 389999999998765 68999999999864
No 302
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=8.6e-36 Score=346.44 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=163.7
Q ss_pred CcEEEeeeEEEcCC---CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe-eccCcccccCCC
Q 040758 497 KLLDIEDLTLKTPT---SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY-VKDREETDAHTS 572 (788)
Q Consensus 497 ~~I~~~nvsf~y~~---~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~-~~~~~~i~~~~~ 572 (788)
.+|+++||+++|++ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+..++.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~---- 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT---- 353 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc----
Confidence 36999999999953 23569999999999999999999999999999999999999999999995 32211111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
..........++.|+||||++.+|. .|+.||+.++... ...
T Consensus 354 -------------~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~------------------------ 395 (520)
T TIGR03269 354 -------------KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELP------------------------ 395 (520)
T ss_pred -------------ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCC------------------------
Confidence 0000000123456999999998886 4999999753100 000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+++.++++.+++..... -+.......+||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 396 ----~~~~~~~~~~~l~~~~l~~~~~----~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~ 467 (520)
T TIGR03269 396 ----DELARMKAVITLKMVGFDEEKA----EEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVT 467 (520)
T ss_pred ----HHHHHHHHHHHHHhCCCCCccc----hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0001234566777776642100 00113446779999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 468 ~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 468 HSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506 (520)
T ss_pred HHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98853 489999999998765 68999999998864
No 303
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-35 Score=347.75 Aligned_cols=223 Identities=23% Similarity=0.281 Sum_probs=162.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~---------------- 68 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP---------------- 68 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------------
Confidence 6999999999962 36799999999999999999999999999999999999999999998731
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccc-cchhhH-HHHhcC-Cccchh----hhhhhh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEE-VKPASD-AAKSAG-LVPFLT----SAQKLE 649 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~-~~~~~~-aa~~~~-~~~~i~----~~~~~~ 649 (788)
+..||||+|++.+++. |+.||+.++..... ...... ...... ..+... ....+.
T Consensus 69 ------------------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (556)
T PRK11819 69 ------------------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQ 130 (556)
T ss_pred ------------------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 1349999999998865 99999987521100 000000 000000 000000 000000
Q ss_pred -hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 -NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 -~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
............++.++++.+++.. ......+|||||||||+|||||+.+|++||||||||+||+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~ 200 (556)
T PRK11819 131 EIIDAADAWDLDSQLEIAMDALRCPP----------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200 (556)
T ss_pred HHHHhcCccchHHHHHHHHHhCCCCc----------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHH
Confidence 0000000111345666777766632 12345679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 729 HLYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++.+.|+|+|||+++.+ ..||+|++|++|+.
T Consensus 201 ~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 99999988667999999998765 57999999999875
No 304
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=5e-36 Score=312.54 Aligned_cols=192 Identities=26% Similarity=0.288 Sum_probs=147.1
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD----GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p----~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~---~~~---------------------- 55 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR---PLL---------------------- 55 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCE---ech----------------------
Confidence 57999999999999999999999999999999999999 8999999543 331
Q ss_pred ccccCcceEEEEccccc-cCC--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHH
Q 040758 591 SMNRNSRGVFFLPQRPY-MVL--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~-lf~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 667 (788)
.....++.++|++|++. .|. .|+.+|+.+.... .+. ......+++.+.+
T Consensus 56 ~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~------------~~~----------------~~~~~~~~~~~~l 107 (230)
T TIGR02770 56 PLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS------------LGK----------------LSKQARALILEAL 107 (230)
T ss_pred hhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHH------------cCc----------------cHHHHHHHHHHHH
Confidence 00112356999999985 343 5888888542100 000 0001124566777
Q ss_pred HhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEE
Q 040758 668 EDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYIS 743 (788)
Q Consensus 668 ~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~ 743 (788)
+.+++... -+.....+..||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|+
T Consensus 108 ~~~~l~~~------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 181 (230)
T TIGR02770 108 EAVGLPDP------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181 (230)
T ss_pred HHcCCCch------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 77766421 0112345678999999999999999999999999999999999999999888864 3899999
Q ss_pred EecCcchh-hcCCEEEEEccCCC
Q 040758 744 VGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+||+++.+ ..||++++|++|+.
T Consensus 182 ~sH~~~~~~~~~d~i~~l~~G~i 204 (230)
T TIGR02770 182 ITHDLGVVARIADEVAVMDDGRI 204 (230)
T ss_pred EeCCHHHHHHhCCEEEEEECCEE
Confidence 99998765 68999999999874
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.3e-36 Score=348.18 Aligned_cols=218 Identities=22% Similarity=0.328 Sum_probs=161.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEeecc-------------
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGRGKITFYVKD------------- 563 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~G~I~~~~~~------------- 563 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+++..
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFD--GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEEC--CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 57899999995 457999999999999999999999999999999999996 7999999996311
Q ss_pred -------CcccccCCCccchhhhcccccccchhcccccCcceEEEEccc-cccCC-CCHHHHhcCCCCccccchhhHHHH
Q 040758 564 -------REETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR-PYMVL-GSLRQQLIYPTWTEEVKPASDAAK 634 (788)
Q Consensus 564 -------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~-~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~ 634 (788)
|.++.. ...+............++.++||+|+ +.+|. .|++||+.++....
T Consensus 79 g~~~~~~g~~~~~----------~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---------- 138 (520)
T TIGR03269 79 GEPCPVCGGTLEP----------EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---------- 138 (520)
T ss_pred ccccccccccccc----------cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc----------
Confidence 111100 00000000000111235679999998 56775 59999997641100
Q ss_pred hcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040758 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVL 714 (788)
Q Consensus 635 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLi 714 (788)
+. ......+++.++++.++++...+ ....+|||||||||+|||||+.+|++||
T Consensus 139 --~~----------------~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGq~qrv~iA~al~~~p~lll 191 (520)
T TIGR03269 139 --GY----------------EGKEAVGRAVDLIEMVQLSHRIT---------HIARDLSGGEKQRVVLARQLAKEPFLFL 191 (520)
T ss_pred --CC----------------CHHHHHHHHHHHHHHcCChhhhh---------cCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 00001235667788877754322 3457799999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 715 LDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 715 LDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 192 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i 247 (520)
T TIGR03269 192 ADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247 (520)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 9999999999999999887753 489999999999876 67999999999875
No 306
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-36 Score=345.56 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=160.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+....
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~---------- 330 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR---------- 330 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC----------
Confidence 699999998762 389999999999999999999999999999999999999999999964321110
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.+|||||++ .+|. .|+.||+.++...... +.... .+.
T Consensus 331 ------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~---------~~~ 379 (510)
T PRK09700 331 ------------SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDG----------GYKGA---------MGL 379 (510)
T ss_pred ------------CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccc----------ccccc---------ccc
Confidence 00112345699999984 4665 5999999875321000 00000 000
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.......+++.++++.+++. ... .....+|||||||||+|||||+.+|++||||||||+||+.+...+.+
T Consensus 380 ~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 380 FHEVDEQRTAENQRELLALKCHSV---------NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred cChHHHHHHHHHHHHhcCCCCCCc---------cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 00000123456777777663 222 33467799999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++. .++||++++|++|+.
T Consensus 451 ~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 487 (510)
T PRK09700 451 VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487 (510)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 8864 58999999999865 468999999999864
No 307
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=315.96 Aligned_cols=215 Identities=29% Similarity=0.394 Sum_probs=167.6
Q ss_pred CCcEEEeeeEEEcCCC---------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc
Q 040758 496 QKLLDIEDLTLKTPTS---------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE 566 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~---------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~ 566 (788)
...++.+||.+.||-. ...+++++||++++||++||||+||||||||-..|.|+.+++ |+|.++|.+...
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 4478999999998742 124789999999999999999999999999999999999987 999995444322
Q ss_pred cccCCCccchhhhcccccccchhcccccCcceEEEEccccccC---CCCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV---LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 567 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf---~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
. .....+.+|+.+-+||||||=- ..||.+-|.-|-.- |+
T Consensus 353 ~--------------------~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v---------------h~--- 394 (534)
T COG4172 353 L--------------------SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV---------------HE--- 394 (534)
T ss_pred c--------------------ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh---------------cC---
Confidence 2 1223446788899999999731 13555544322110 00
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
........++.+.++|+.+|++. ++.+.++.++|||||||||||||++-+|++++|||||||||
T Consensus 395 --------~~ls~~eR~~rv~~aL~EVGLDp--------~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 395 --------PKLSAAERDQRVIEALEEVGLDP--------ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred --------CCCCHHHHHHHHHHHHHHcCCCh--------hHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 00011123456889999988764 23456788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 724 EANEAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 724 ~~se~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.....+|.+.|++ .|.+.++||||+.+++ .||+++||.+|+.
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gki 505 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI 505 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEE
Confidence 9999999998864 5999999999999875 7999999999975
No 308
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=9.4e-36 Score=344.56 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=162.2
Q ss_pred cEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++|++++|+. +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+....
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~-------- 328 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR-------- 328 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC--------
Confidence 6999999999943 135699999999999999999999999999999999999995 899999964332100
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++++|||+|++ .++. .|+++|+.++.... .. ..
T Consensus 329 --------------~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~-~~---------~~------------- 371 (500)
T TIGR02633 329 --------------NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS-FC---------FK------------- 371 (500)
T ss_pred --------------CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh-hc---------cC-------------
Confidence 00112356799999996 3565 59999998753210 00 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.........+++.+.++.+++... ........||||||||++|||||+.+|++|||||||++||+.+...++
T Consensus 372 ~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 443 (500)
T TIGR02633 372 MRIDAAAELQIIGSAIQRLKVKTA--------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIY 443 (500)
T ss_pred CcCCHHHHHHHHHHHHHhcCccCC--------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH
Confidence 000000012346677887766321 112345679999999999999999999999999999999999999998
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 444 ~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 444 KLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 77653 689999999998755 68999999998864
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.9e-35 Score=344.08 Aligned_cols=223 Identities=24% Similarity=0.307 Sum_probs=159.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~i~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------------- 66 (552)
T ss_pred EEEEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------------
Confidence 6999999999962 35799999999999999999999999999999999999999999998731
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccc--cchhhHHHHhcCC-ccch----hhhhhhh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEE--VKPASDAAKSAGL-VPFL----TSAQKLE 649 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~--~~~~~~aa~~~~~-~~~i----~~~~~~~ 649 (788)
+..||||+|++.++. .|++||+.++..... ............. .... .....+.
T Consensus 67 ------------------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (552)
T TIGR03719 67 ------------------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128 (552)
T ss_pred ------------------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 135999999999886 599999987531100 0000000000000 0000 0000000
Q ss_pred h-hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 N-VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 ~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
. +...+.......+.++++.+++.. ......+||||||||++|||||+.+|++|||||||++||+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~ 198 (552)
T TIGR03719 129 EIIDAADAWDLDRKLEIAMDALRCPP----------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVA 198 (552)
T ss_pred HHHHhcCcchhHHHHHHHHhhCCCCc----------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHH
Confidence 0 000000000123444555544421 13346789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 729 HLYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++.+.|+|+|||+++.+ ..||++++|++|+.
T Consensus 199 ~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 199 WLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 99999988667999999998766 57999999999874
No 310
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=1.2e-35 Score=345.94 Aligned_cols=212 Identities=24% Similarity=0.356 Sum_probs=161.7
Q ss_pred cEEEeeeEEEcCC---------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccc
Q 040758 498 LLDIEDLTLKTPT---------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETD 568 (788)
Q Consensus 498 ~I~~~nvsf~y~~---------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~ 568 (788)
+|+++||+++|+. +++++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+.....
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 6999999999962 13579999999999999999999999999999999999995 8999999654322110
Q ss_pred cCCCccchhhhcccccccchhcccccCcceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhh
Q 040758 569 AHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645 (788)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~ 645 (788)
......+++.++||||++ .++. .|+.||+.++..... . .
T Consensus 354 --------------------~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-----------~---~---- 395 (529)
T PRK15134 354 --------------------RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-----------P---T---- 395 (529)
T ss_pred --------------------hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-----------c---c----
Confidence 000112345799999998 3665 599999976411000 0 0
Q ss_pred hhhhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040758 646 QKLENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE 724 (788)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~ 724 (788)
.......+.+.+.++.+++. ... .....+||||||||++|||||+.+|++|||||||++||+
T Consensus 396 --------~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 396 --------LSAAQREQQVIAVMEEVGLDPETR---------HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred --------CChHHHHHHHHHHHHHcCCCHHHH---------hcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 00000123456777777664 121 234677999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 725 ANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 725 ~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+...+.+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 459 ~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 459 TVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999998863 389999999998765 67999999999875
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=342.76 Aligned_cols=224 Identities=18% Similarity=0.227 Sum_probs=163.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ml~i~~ls~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------- 62 (530)
T PRK15064 1 MLSTANITMQFG--AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP---------------- 62 (530)
T ss_pred CEEEEEEEEEeC--CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------------
Confidence 378999999996 45799999999999999999999999999999999999999999999831
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCcc-ccchhhHHH-H--hcCCccchhhhhhhhhhc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTE-EVKPASDAA-K--SAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~-~~~~~~~aa-~--~~~~~~~i~~~~~~~~~~ 652 (788)
+..|||++|++.+|.. |++||+.++.... ......+.+ . .....+.+...+..+...
T Consensus 63 ------------------~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (530)
T PRK15064 63 ------------------NERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFA 124 (530)
T ss_pred ------------------CCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHH
Confidence 1249999999988864 9999998753110 000000000 0 000000000000000011
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
........+++.++++.+++..... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 125 ~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~ 196 (530)
T PRK15064 125 EMDGYTAEARAGELLLGVGIPEEQH--------YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLED 196 (530)
T ss_pred hcCchhHHHHHHHHHHhCCCChhHh--------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH
Confidence 1111112345667788777643111 12356799999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.+.|.|+|+|||+++.+ +.||+|++|++|+.
T Consensus 197 ~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 197 VLNERNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred HHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 9988899999999998765 68999999999875
No 312
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.1e-36 Score=289.38 Aligned_cols=220 Identities=25% Similarity=0.304 Sum_probs=168.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|+.++|+ ...+|+++||+.++|+.+.|+|.|||||||++++|.=+..|+.|+|.++ |+++.++.+.....
T Consensus 6 ~l~v~dlHK~~G--~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~---geei~~k~~~~G~l 80 (256)
T COG4598 6 ALEVEDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN---GEEIRLKRDKDGQL 80 (256)
T ss_pred ceehhHHHhhcc--cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEEC---CeEEEeeeCCCCCe
Confidence 488999999996 4679999999999999999999999999999999999999999999995 55555433221111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...+.....++|.+.|+|+|+..|.+ .|+.||+.-.-... ++ ..+
T Consensus 81 -------~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--------------------------Lg-~~k 126 (256)
T COG4598 81 -------KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--------------------------LG-VSK 126 (256)
T ss_pred -------eeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--------------------------hc-CCH
Confidence 11122334467788999999999984 69999985321100 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH--
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI-- 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L-- 734 (788)
....+..+..|.++|+.+ ....++..|||||+||+||||||..+|+++++|||||||||+-.-++.+.+
T Consensus 127 ~ea~e~Ae~~L~kVGi~e---------k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~ 197 (256)
T COG4598 127 AEAIERAEKYLAKVGIAE---------KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD 197 (256)
T ss_pred HHHHHHHHHHHHHhCchh---------hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHH
Confidence 111233455666666543 234567889999999999999999999999999999999999988776655
Q ss_pred -HhcCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 735 -EAAGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.++|+|.+++||.+.+.+ .+.+++.|++|..
T Consensus 198 LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 198 LAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred HHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 458999999999998875 5899999999964
No 313
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.6e-35 Score=321.46 Aligned_cols=210 Identities=21% Similarity=0.301 Sum_probs=167.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++++++.|| +-.+++||||+|++||+.||.|+||||||||+++|.|+|+|++|+|.++| +.+..
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G---~~v~~-------- 70 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRI-------- 70 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECC---EEecc--------
Confidence 489999999998 56789999999999999999999999999999999999999999999954 44321
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+.+..+..||+|+|.+.|++. |+.|||..|...... .. ...
T Consensus 71 -----------~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~-------------~~------------~~~ 114 (501)
T COG3845 71 -----------KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKG-------------GL------------IDR 114 (501)
T ss_pred -----------CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccc-------------cc------------cCH
Confidence 11333567789999999999976 999999988643100 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+..++.|+.-. .......||-||||||.|-+||+++|++||||||||-|-|...+++++.|++
T Consensus 115 ~~~~~~i~~l~~~yGl~vd---------p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 115 RQARARIKELSERYGLPVD---------PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred HHHHHHHHHHHHHhCCCCC---------ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0112345555555544321 2345677999999999999999999999999999999999999999888764
Q ss_pred ---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|+|||+|||++. ..+.|||+-||..|+-
T Consensus 186 l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv 218 (501)
T COG3845 186 LAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV 218 (501)
T ss_pred HHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeE
Confidence 7999999999985 5678999999999964
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=1.1e-34 Score=280.73 Aligned_cols=143 Identities=31% Similarity=0.491 Sum_probs=129.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~----------------- 61 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS----------------- 61 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC-----------------
Confidence 468999999963 4799999999999999999999999999999999999999999999842
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+..++|++|
T Consensus 62 -----------------~~~i~~~~~------------------------------------------------------ 70 (144)
T cd03221 62 -----------------TVKIGYFEQ------------------------------------------------------ 70 (144)
T ss_pred -----------------eEEEEEEcc------------------------------------------------------
Confidence 123677655
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAG 738 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g 738 (788)
||+||+||++|||||+++|+++||||||++||+.+...+.+.+++.+
T Consensus 71 ---------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 117 (144)
T cd03221 71 ---------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP 117 (144)
T ss_pred ---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999998878
Q ss_pred CEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 739 ITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 739 ~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+|+|++||+.+.+ ..||++++|++|+
T Consensus 118 ~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 118 GTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 8999999998766 6799999999875
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-35 Score=303.59 Aligned_cols=173 Identities=30% Similarity=0.455 Sum_probs=143.9
Q ss_pred cEEEeeeEEEcCCCC-------ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTSK-------ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~-------~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
.++++|+++.|+.+. ..+++||||+|++||+++|||+||||||||-|+|+|+++|++|+|+++|.|+..+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~--- 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL--- 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc---
Confidence 589999999997532 2689999999999999999999999999999999999999999999964432111
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. + .
T Consensus 81 -------------------------~-----------------~--------~--------------------------- 83 (268)
T COG4608 81 -------------------------S-----------------K--------E--------------------------- 83 (268)
T ss_pred -------------------------c-----------------h--------h---------------------------
Confidence 0 0 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
...+++.+.|+.+|+.. +....++.+|||||||||+|||||+-+|+++++|||||+||...+++|
T Consensus 84 -------~~~~~v~elL~~Vgl~~--------~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI 148 (268)
T COG4608 84 -------ERRERVLELLEKVGLPE--------EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI 148 (268)
T ss_pred -------HHHHHHHHHHHHhCCCH--------HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH
Confidence 01245777888877542 112455788999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.+.|.+ .|.|.++|||++++++ .||||.||..|+.
T Consensus 149 lnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 149 LNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred HHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCce
Confidence 988753 5999999999999886 5999999999975
No 316
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.6e-35 Score=306.93 Aligned_cols=181 Identities=25% Similarity=0.296 Sum_probs=143.2
Q ss_pred EEcCCCCccceeeeeEEEe-----CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 506 LKTPTSKATLVRDLSLVIN-----EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 506 f~y~~~~~~vL~~isl~i~-----~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
|+||+ ..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 ~~y~~-~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g------------------- 60 (246)
T cd03237 1 YTYPT-MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL------------------- 60 (246)
T ss_pred CCCcc-cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC-------------------
Confidence 56764 3457888888887 7999999999999999999999999999999999831
Q ss_pred ccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
..|+|++|++.. +..|++||+.+..... ...
T Consensus 61 ----------------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~ 92 (246)
T cd03237 61 ----------------DTVSYKPQYIKADYEGTVRDLLSSITKDF--------------------------------YTH 92 (246)
T ss_pred ----------------ceEEEecccccCCCCCCHHHHHHHHhhhc--------------------------------ccc
Confidence 138999999874 5789999986421100 000
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.....++++.+++.... .....+||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 93 ~~~~~~~l~~l~l~~~~---------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 93 PYFKTEIAKPLQIEQIL---------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163 (246)
T ss_pred HHHHHHHHHHcCCHHHh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 12234456655554322 234567999999999999999999999999999999999999999888764
Q ss_pred -cCCEEEEEecCcchhh-cCCEEEEEccC
Q 040758 737 -AGITYISVGHRRTLYD-FHKRVLRISTV 763 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~-~~D~Ilvl~~g 763 (788)
.|+|+|+|||+++.+. .||++++|+++
T Consensus 164 ~~~~tiiivsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 164 NNEKTAFVVEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence 3899999999987764 79999999753
No 317
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.1e-34 Score=301.09 Aligned_cols=183 Identities=26% Similarity=0.332 Sum_probs=142.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++. ..++.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~---~~~-------------------------~~~~~i~ 52 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA---SPG-------------------------KGWRHIG 52 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc---cch-------------------------HhhCcEE
Confidence 578999999999999999999999999999999999999543 221 1245699
Q ss_pred EEcccccc---CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 601 FLPQRPYM---VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 601 ~v~Q~~~l---f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
|+||++.+ +..|+.||+.++..... +. .. .......+++.++++.+++....
T Consensus 53 ~v~q~~~~~~~~~~tv~~~l~~~~~~~~-----------~~------------~~-~~~~~~~~~~~~~l~~~~l~~~~- 107 (223)
T TIGR03771 53 YVPQRHEFAWDFPISVAHTVMSGRTGHI-----------GW------------LR-RPCVADFAAVRDALRRVGLTELA- 107 (223)
T ss_pred EecccccccCCCCccHHHHHHhcccccc-----------cc------------cc-CCcHHHHHHHHHHHHHhCCchhh-
Confidence 99999876 35799999987522100 00 00 00001124566778877765332
Q ss_pred cCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchh-hc
Q 040758 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLY-DF 753 (788)
Q Consensus 678 ~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~-~~ 753 (788)
.....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++ .|+|+|++||+++.+ +.
T Consensus 108 --------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~ 179 (223)
T TIGR03771 108 --------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMAT 179 (223)
T ss_pred --------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 234567999999999999999999999999999999999999999998864 589999999998754 68
Q ss_pred CCEEEEEccCCC
Q 040758 754 HKRVLRISTVDQ 765 (788)
Q Consensus 754 ~D~Ilvl~~g~~ 765 (788)
||+++++ +|+.
T Consensus 180 ~d~i~~l-~G~i 190 (223)
T TIGR03771 180 CDRVVLL-NGRV 190 (223)
T ss_pred CCEEEEE-CCEE
Confidence 9999999 6764
No 318
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-34 Score=335.67 Aligned_cols=192 Identities=23% Similarity=0.335 Sum_probs=158.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 318 ~~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------- 380 (530)
T PRK15064 318 NALEVENLTKGFD--NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE--------------- 380 (530)
T ss_pred ceEEEEeeEEeeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------
Confidence 4799999999996 35699999999999999999999999999999999999999999999831
Q ss_pred hhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
++.+||++|++. ++. .|+++|+.+....
T Consensus 381 -------------------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~------------------------------ 411 (530)
T PRK15064 381 -------------------NANIGYYAQDHAYDFENDLTLFDWMSQWRQE------------------------------ 411 (530)
T ss_pred -------------------ceEEEEEcccccccCCCCCcHHHHHHHhccC------------------------------
Confidence 135999999974 443 5999988531100
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
....+++.+.++.+++. .. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 412 ---~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 412 ---GDDEQAVRGTLGRLLFSQDD---------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred ---CccHHHHHHHHHHcCCChhH---------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 01224566677776652 11 133467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 733 QIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 733 ~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|++.+.|+|+|||+.+.+ .+||++++|++|+..
T Consensus 480 ~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 480 ALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9988777999999998765 579999999998754
No 319
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-34 Score=367.95 Aligned_cols=208 Identities=22% Similarity=0.261 Sum_probs=168.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~d---I~-------- 995 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD---IE-------- 995 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEE---Cc--------
Confidence 4699999999996445679999999999999999999999999999999999999999999996443 31
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. .....|+.+||+||++.+|+. |++||+.++.... +. .
T Consensus 996 ---------~----~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk------------g~----------------~ 1034 (2272)
T TIGR01257 996 ---------T----NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK------------GR----------------S 1034 (2272)
T ss_pred ---------c----hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc------------CC----------------C
Confidence 0 111345679999999999964 9999998631100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.+.++.++++... +....+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+
T Consensus 1035 ~~~~~~~v~~lL~~vgL~~~~---------~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257 1035 WEEAQLEMEAMLEDTGLHHKR---------NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred HHHHHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 001124567778887765432 34467899999999999999999999999999999999999999999887
Q ss_pred h--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ +|+|+|++||+++.+ ..||||++|++|+.
T Consensus 1106 ~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257 1106 KYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138 (2272)
T ss_pred HHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 5 589999999998766 57999999999975
No 320
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=344.07 Aligned_cols=211 Identities=26% Similarity=0.318 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.+.....
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~------- 76 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLD------- 76 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCC-------
Confidence 69999999999642 246999999999999999999999999999999999999999999999654322110
Q ss_pred hhhhcccccccchhcccc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
..... ..++.++|++|++.+|+ .|+.||+.++.... +.
T Consensus 77 -------------~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~------------~~--------------- 116 (648)
T PRK10535 77 -------------ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA------------GL--------------- 116 (648)
T ss_pred -------------HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc------------CC---------------
Confidence 00000 12467999999999996 59999998632100 00
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....++++.+.++.++++... +..+.+|||||+||++|||||+++|++|||||||++||+.+.+.+.+.
T Consensus 117 -~~~~~~~~~~~~l~~lgl~~~~---------~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 117 -ERKQRLLRAQELLQRLGLEDRV---------EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred -CHHHHHHHHHHHHHHCCChhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 0001123456677777665432 233567999999999999999999999999999999999999999988
Q ss_pred HHh---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++ .|+|+|++||+++..+.||++++|++|+.
T Consensus 187 l~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i 221 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221 (648)
T ss_pred HHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEE
Confidence 864 58999999999998888999999999975
No 321
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-34 Score=306.00 Aligned_cols=181 Identities=21% Similarity=0.208 Sum_probs=140.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g------------------------------ 85 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------------------------------ 85 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC------------------------------
Confidence 34689999999999999999999999999999999999999999999842
Q ss_pred cccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
.+++++|++.++. .|+.+|+.++....... .....+.+.++++.+
T Consensus 86 ------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~ 131 (264)
T PRK13546 86 ------EVSVIAISAGLSGQLTGIENIEFKMLCMGFK----------------------------RKEIKAMTPKIIEFS 131 (264)
T ss_pred ------EEeEEecccCCCCCCcHHHHHHHHHHHcCCC----------------------------HHHHHHHHHHHHHHc
Confidence 1455677776654 59999997631100000 000011233445544
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHR 747 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr 747 (788)
+++... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+ .|+|+|++||+
T Consensus 132 ~l~~~~---------~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 132 ELGEFI---------YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred CCchhh---------cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 443322 234667999999999999999999999999999999999999999888754 58999999999
Q ss_pred cchh-hcCCEEEEEccCCC
Q 040758 748 RTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 748 ~~~~-~~~D~Ilvl~~g~~ 765 (788)
++.+ ..||+|++|++|+.
T Consensus 203 ~~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 203 LGQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred HHHHHHHcCEEEEEECCEE
Confidence 8765 67999999999864
No 322
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.4e-34 Score=342.33 Aligned_cols=205 Identities=24% Similarity=0.332 Sum_probs=158.2
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--CceEEEeeccCcccccCCCccchhh
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG--RGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~--~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
.+|++++|+ ++.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||.+ +.
T Consensus 71 ~~~l~~~~~--~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~---~~---------- 135 (659)
T PLN03211 71 ISDETRQIQ--ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRK---PT---------- 135 (659)
T ss_pred cccccccCC--CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEE---Cc----------
Confidence 445555564 457999999999999999999999999999999999999985 8999996432 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...++.+|||+|++.++. .|++||+.+...... + ......
T Consensus 136 --------------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~--------------~-----------~~~~~~ 176 (659)
T PLN03211 136 --------------KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRL--------------P-----------KSLTKQ 176 (659)
T ss_pred --------------hhhccceEEECcccccCCcCCHHHHHHHHHHhCC--------------C-----------CCCCHH
Confidence 012346999999999996 599999987421000 0 000000
Q ss_pred CChHHHHHHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.+.++.+++.... ++. + .....||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+
T Consensus 177 ~~~~~v~~~l~~lgL~~~~------~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~ 250 (659)
T PLN03211 177 EKILVAESVISELGLTKCE------NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG 250 (659)
T ss_pred HHHHHHHHHHHHcCChhhc------CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 0113456677777775432 332 2 3467799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcc--hhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+++|+++ ..+.+|++++|++|+.
T Consensus 251 ~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~i 285 (659)
T PLN03211 251 SLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285 (659)
T ss_pred HHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcE
Confidence 4 6999999999986 4678999999999864
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=334.66 Aligned_cols=209 Identities=20% Similarity=0.301 Sum_probs=158.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~--------- 320 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS--------- 320 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC---------
Confidence 689999984 3699999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....++++|||||++ .++ ..|+.||+.++.... .. ... +.
T Consensus 321 -------------~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-~~---------~~~------------~~ 365 (501)
T PRK10762 321 -------------PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY-FS---------RAG------------GS 365 (501)
T ss_pred -------------HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh-hc---------ccc------------cc
Confidence 0012345699999997 355 469999998752100 00 000 00
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.......+++.+.++.+++. .. ......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+
T Consensus 366 ~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 436 (501)
T PRK10762 366 LKHADEQQAVSDFIRLFNIKTPS---------MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436 (501)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCC---------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 00000123466777777663 22 234466799999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 733 QIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|++ +|+|+|++||+++.+ ++||++++|++|+..
T Consensus 437 ~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 437 LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 8864 589999999998754 689999999998753
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=334.22 Aligned_cols=209 Identities=17% Similarity=0.268 Sum_probs=157.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~--------- 321 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS--------- 321 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC---------
Confidence 5899999832 4899999999999999999999999999999999999999999999644321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccc---cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY---MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~---lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....++.++|+||++. +| ..|+.||+.++....... .+ +.
T Consensus 322 -------------~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~--------~~---~~----------- 366 (501)
T PRK11288 322 -------------PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLR--------AG---CL----------- 366 (501)
T ss_pred -------------HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcc--------cc---cc-----------
Confidence 01123456999999973 55 479999998743110000 00 00
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.......+++.+.++.+++. .. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 367 ~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 437 (501)
T PRK11288 367 INNRWEAENADRFIRSLNIKTPS---------REQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN 437 (501)
T ss_pred cChHHHHHHHHHHHHhcCcccCC---------ccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 00000123456677777662 22 233466799999999999999999999999999999999999999998
Q ss_pred HHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .|.|+|++||+++.+ ++||++++|++|+.
T Consensus 438 ~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i 474 (501)
T PRK11288 438 VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474 (501)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEE
Confidence 8753 689999999998755 78999999999864
No 325
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7e-35 Score=292.90 Aligned_cols=202 Identities=25% Similarity=0.346 Sum_probs=162.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++++|+++|+ ++.+++|+||++++|++.+++|||||||||.+++|+|+.+|++|+|.++| .+++
T Consensus 2 ~L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g---~~~~--------- 67 (300)
T COG4152 2 ALEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG---GPLS--------- 67 (300)
T ss_pred ceEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC---cchh---------
Confidence 489999999995 57899999999999999999999999999999999999999999999954 3332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...+..|||+|.+-.|+. .|+.|.+.|-..-..+ ..
T Consensus 68 ---------------~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm----------------------------~~ 104 (300)
T COG4152 68 ---------------QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGM----------------------------PK 104 (300)
T ss_pred ---------------hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCC----------------------------cH
Confidence 123456999999999996 4999999883111000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
+....++...|+++++. +....+..+||-|.+|+|.+--+++++|+++|||||+|+|||.+.+.+-+.+.
T Consensus 105 ~e~~~~~~~wLer~~i~---------~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~ 175 (300)
T COG4152 105 AEIQKKLQAWLERLEIV---------GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175 (300)
T ss_pred HHHHHHHHHHHHhcccc---------ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHH
Confidence 01112344555555443 33345567899999999999999999999999999999999999998888764
Q ss_pred --hcCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 --AAGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 --~~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+.|.|+|+.+||++ ..+.||+++.|++|..
T Consensus 176 lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~ 208 (300)
T COG4152 176 LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT 208 (300)
T ss_pred HHhcCCEEEEecchHHHHHHHhhhhheecCCce
Confidence 47999999999986 5578999999999964
No 326
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-35 Score=297.55 Aligned_cols=188 Identities=24% Similarity=0.395 Sum_probs=155.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
-=++||+.+.-.++||-|+||||||||+|+|+|+..|++|+|.+||.-..|-. + ......-
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~-------------k------~i~lp~~ 74 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE-------------K------GIFLPPE 74 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeeccc-------------C------CcccChh
Confidence 35788999887999999999999999999999999999999999654333321 0 1112234
Q ss_pred cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 596 SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
++.|||||||.-||. -||+-|++||.+.. ..+++.++...+|+++
T Consensus 75 ~RriGYVFQDARLFpH~tVrgNL~YG~~~~----------------------------------~~~~fd~iv~lLGI~h 120 (352)
T COG4148 75 KRRIGYVFQDARLFPHYTVRGNLRYGMWKS----------------------------------MRAQFDQLVALLGIEH 120 (352)
T ss_pred hheeeeEeeccccccceEEecchhhhhccc----------------------------------chHhHHHHHHHhCcHH
Confidence 677999999999995 69999999986532 2346667777778887
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCc-c
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRR-T 749 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~-~ 749 (788)
++++ ++.+|||||||||||+|||+.+|++|+||||.|+||....++++-.|++ -+.-++.+||.+ +
T Consensus 121 LL~R---------~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 121 LLDR---------YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HHhh---------CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 7665 4678999999999999999999999999999999999999999877753 488999999997 5
Q ss_pred hhhcCCEEEEEccCCC
Q 040758 750 LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 750 ~~~~~D~Ilvl~~g~~ 765 (788)
+.+.||++++|++|+.
T Consensus 192 v~RLAd~vV~le~GkV 207 (352)
T COG4148 192 VLRLADRVVVLENGKV 207 (352)
T ss_pred HHhhhheEEEecCCeE
Confidence 6789999999999975
No 327
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.4e-34 Score=332.00 Aligned_cols=212 Identities=18% Similarity=0.273 Sum_probs=157.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEEeeccCcccccCCCccc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
..|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|.+ +.
T Consensus 259 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~---~~------- 326 (490)
T PRK10938 259 PRIVLNNGVVSYN--DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR---RG------- 326 (490)
T ss_pred ceEEEeceEEEEC--CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc---CC-------
Confidence 4699999999996 35699999999999999999999999999999999999876 79999996542 10
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+ ......+++|+|++|++.++. .|+.+++.++.... . +...
T Consensus 327 ---------~~---~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~------------ 371 (490)
T PRK10938 327 ---------SG---ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS-I----------GIYQ------------ 371 (490)
T ss_pred ---------CC---CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc-c----------cccc------------
Confidence 00 000123467999999986642 36666664331100 0 0000
Q ss_pred cCCCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+++.++++.+++.. .. .....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 372 -~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 441 (490)
T PRK10938 372 -AVSDRQQKLAQQWLDILGIDKRTA---------DAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR 441 (490)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhc---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 000001234667788777653 22 2345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cC-CEEEEEecCcchhh--cCCEEEEEccCCC
Q 040758 732 EQIEA---AG-ITYISVGHRRTLYD--FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g-~TvI~IaHr~~~~~--~~D~Ilvl~~g~~ 765 (788)
+.|++ .+ .|+|+|||+++.+. .||++++|++|+.
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDI 481 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCce
Confidence 98864 44 57999999998764 4899999999863
No 328
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-34 Score=321.89 Aligned_cols=196 Identities=17% Similarity=0.239 Sum_probs=151.0
Q ss_pred CcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 497 KLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+++++|++|+|+++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~---~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA---A-------- 88 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe---e--------
Confidence 3699999999997532 469999999999999999999999999999999999999999999985321 0
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
++.+.+.++ ..|++||+.+........
T Consensus 89 -------------------------~i~~~~~l~~~lTV~EnL~l~~~~~~~~--------------------------- 116 (549)
T PRK13545 89 -------------------------LIAISSGLNGQLTGIENIELKGLMMGLT--------------------------- 116 (549)
T ss_pred -------------------------eEEeccccCCCCcHHHHHHhhhhhcCCC---------------------------
Confidence 111223333 359999997632100000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.+.++++.++++...+ ..+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 117 -~~e~~e~i~elLe~lgL~~~ld---------~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL 186 (549)
T PRK13545 117 -KEKIKEIIPEIIEFADIGKFIY---------QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186 (549)
T ss_pred -HHHHHHHHHHHHHHcCChhHhh---------CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0000123445666666653322 345679999999999999999999999999999999999999998888
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|++||+++.+ ..||++++|++|+.
T Consensus 187 ~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkI 221 (549)
T PRK13545 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQV 221 (549)
T ss_pred HHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 54 589999999998765 67999999999864
No 329
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-34 Score=271.94 Aligned_cols=214 Identities=27% Similarity=0.332 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++|.|+ ...+|.||+|+.+.||++.+.||||+|||||++.|.=+.-|.+|+..+.|+ ..+....
T Consensus 2 sirv~~in~~yg--~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~---~fd~s~~----- 71 (242)
T COG4161 2 SIQLNGINCFYG--AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN---HFDFSKT----- 71 (242)
T ss_pred ceEEcccccccc--cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccc---ccccccC-----
Confidence 388999999996 457999999999999999999999999999999999999999999998432 2211000
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++|+++|+|+|.-.|.+ .|+-||+.-. -+|..+. .+
T Consensus 72 ---------~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-----------p~kv~gl----------------~~ 115 (242)
T COG4161 72 ---------PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-----------PCRVLGL----------------SK 115 (242)
T ss_pred ---------ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-----------hHHHhCC----------------CH
Confidence 001123357889999999998874 6999998521 0111111 01
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.....+..+.|+.+.+..+.+ .++-.|||||+||+||||||+.+|++|++||||++|||+-...+.+.+++
T Consensus 116 ~qa~~~a~ellkrlrl~~~ad---------r~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iike 186 (242)
T COG4161 116 DQALARAEKLLKRLRLKPYAD---------RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186 (242)
T ss_pred HHHHHHHHHHHHHhccccccc---------cCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence 112245667777777765544 45677999999999999999999999999999999999999998887765
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|.|-+++||..++. +.|.+++.|++|+..
T Consensus 187 l~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 187 LAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 699999999998876 569999999999753
No 330
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.2e-34 Score=303.09 Aligned_cols=206 Identities=19% Similarity=0.192 Sum_probs=146.7
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQ 582 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~ 582 (788)
||+++|++ ++.+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|...+. .+.. ...+++.
T Consensus 5 ~~~~~y~~-~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~--~~~~-------~~~~~g~ 73 (255)
T cd03236 5 EPVHRYGP-NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPD--WDEI-------LDEFRGS 73 (255)
T ss_pred CcceeecC-cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccc--cchh-------hhhccCc
Confidence 68899963 3468999994 9999999999999999999999999999999999972100 0000 0001111
Q ss_pred ccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHH
Q 040758 583 NMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD 662 (788)
Q Consensus 583 ~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 662 (788)
++.... ....+....+++++|++.++..++.+|+...... ....+.
T Consensus 74 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~---------------------------------~~~~~~ 119 (255)
T cd03236 74 ELQNYF-TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK---------------------------------KDERGK 119 (255)
T ss_pred hhhhhh-HHhhhcccceeeecchhccCchHHHHHHHHHhch---------------------------------hHHHHH
Confidence 111000 0000111247899998887776666666432000 001234
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCC
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGI 739 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~ 739 (788)
+.++++.+++.... ...+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.|++ .++
T Consensus 120 ~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~ 190 (255)
T cd03236 120 LDELVDQLELRHVL---------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190 (255)
T ss_pred HHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 56667776654322 234567999999999999999999999999999999999999988888764 589
Q ss_pred EEEEEecCcchhh-cCCEEEEEcc
Q 040758 740 TYISVGHRRTLYD-FHKRVLRIST 762 (788)
Q Consensus 740 TvI~IaHr~~~~~-~~D~Ilvl~~ 762 (788)
|+|+|||+++.+. +||+|++|++
T Consensus 191 tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 191 YVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred EEEEEECCHHHHHHhCCEEEEECC
Confidence 9999999998765 7999999965
No 331
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5e-34 Score=362.13 Aligned_cols=209 Identities=19% Similarity=0.228 Sum_probs=165.8
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++||+++|+++++.+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+ +.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~---i~------- 2004 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKS---IL------- 2004 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE---Cc-------
Confidence 34799999999996433679999999999999999999999999999999999999999999996443 21
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
......++.|||+||++.++. .|++||+.+.... .+.
T Consensus 2005 --------------~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l------------~g~---------------- 2042 (2272)
T TIGR01257 2005 --------------TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL------------RGV---------------- 2042 (2272)
T ss_pred --------------chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh------------cCC----------------
Confidence 001123567999999999886 5999999752100 000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..+...+.+.+.++.+++....+ ....+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|
T Consensus 2043 ~~~~~~~~v~~lLe~lgL~~~~d---------k~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL 2113 (2272)
T TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYAD---------RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 00001133456677777654332 345679999999999999999999999999999999999999999987
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ +|+|+|++||+++.+ +.||||++|++|+.
T Consensus 2114 ~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2114 VSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 589999999998655 68999999999964
No 332
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-33 Score=331.01 Aligned_cols=193 Identities=20% Similarity=0.222 Sum_probs=155.7
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 321 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~--------------- 383 (552)
T TIGR03719 321 KVIEAENLSKGFG--DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE--------------- 383 (552)
T ss_pred eEEEEeeEEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC---------------
Confidence 4799999999996 35799999999999999999999999999999999999999999998720
Q ss_pred hhhcccccccchhcccccCcceEEEEccccc-cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...|||++|++. ++. .|+.||+.++......
T Consensus 384 -------------------~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---------------------------- 416 (552)
T TIGR03719 384 -------------------TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQL---------------------------- 416 (552)
T ss_pred -------------------ceEEEEEeCCccccCCCCcHHHHHHhhcccccc----------------------------
Confidence 014999999973 554 5999999875311000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+..+.++.+++... .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 417 --~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 486 (552)
T TIGR03719 417 --GKREVPSRAYVGRFNFKGS--------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486 (552)
T ss_pred --CcchHHHHHHHHhCCCChh--------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0011233456666655311 012345779999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 735 EAAGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
++.+.|+|+|||+++.+ ++||+|++|++|
T Consensus 487 ~~~~~~viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 487 LEFAGCAVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred HHCCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 88656999999998765 579999999875
No 333
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-33 Score=330.91 Aligned_cols=193 Identities=20% Similarity=0.223 Sum_probs=155.3
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 323 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------- 385 (556)
T PRK11819 323 KVIEAENLSKSFG--DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE--------------- 385 (556)
T ss_pred eEEEEEeEEEEEC--CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------
Confidence 4799999999996 35799999999999999999999999999999999999999999998720
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc-ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...|||+||++ .++. .|+.||+.++......
T Consensus 386 -------------------~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---------------------------- 418 (556)
T PRK11819 386 -------------------TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---------------------------- 418 (556)
T ss_pred -------------------ceEEEEEeCchhhcCCCCCHHHHHHhhcccccc----------------------------
Confidence 01399999997 5554 5999999875211000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+..++++.+++... .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 419 --~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 488 (556)
T PRK11819 419 --GNREIPSRAYVGRFNFKGG--------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488 (556)
T ss_pred --cccHHHHHHHHHhCCCChh--------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 0011233456666655310 012345679999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 735 EAAGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
.+.+.|+|+|||+++.+ .+||+|++|++|
T Consensus 489 ~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~ 518 (556)
T PRK11819 489 LEFPGCAVVISHDRWFLDRIATHILAFEGD 518 (556)
T ss_pred HhCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 88555999999998765 679999999874
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-34 Score=330.24 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=157.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|+++.| +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+....
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 315 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH---------- 315 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCC----------
Confidence 69999999974 2589999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccc---cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY---MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~---lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.++|+||++. +|. .|+.+|+.+..... .+...+.
T Consensus 316 ------------~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------- 361 (491)
T PRK10982 316 ------------NANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN-------YKNKVGL--------------- 361 (491)
T ss_pred ------------CHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh-------hcccccc---------------
Confidence 011123456999999963 554 58887754421100 0000000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......+.+.+.++.+++.. +.......+||||||||++||||++.+|+||||||||++||+.+...+++.
T Consensus 362 ~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~ 433 (491)
T PRK10982 362 LDNSRMKSDTQWVIDSMRVKT--------PGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQL 433 (491)
T ss_pred cCcHHHHHHHHHHHHhcCccC--------CCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHH
Confidence 000001234556677665531 112345678999999999999999999999999999999999999999888
Q ss_pred HH---hcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 734 IE---AAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 734 L~---~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
++ +.|+|+|+|||+++.+ ++||++++|++|+..
T Consensus 434 l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 434 IAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 74 3699999999998755 689999999998764
No 335
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-34 Score=282.37 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=171.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++.+++|+|++|++|.+++|+||||||||||+.+++|+.++++|+|.++|.+....
T Consensus 1 MI~i~nv~K~y~--~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~---------- 68 (252)
T COG4604 1 MITIENVSKSYG--TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTST---------- 68 (252)
T ss_pred CeeehhhhHhhC--CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccC----------
Confidence 478999999995 57899999999999999999999999999999999999999999999965544332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+-+.+.+.++++-|+..+-.. ||+|-+.||....+- .+..
T Consensus 69 -------------~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq--------------------------GRlt 109 (252)
T COG4604 69 -------------PSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ--------------------------GRLT 109 (252)
T ss_pred -------------ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC--------------------------CCCc
Confidence 122345668889999887654 999999998654221 0111
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+...+.++++.+++..+.++ +-.+||||||||.-||..++++.+.++||||.++||-.....+++.|++
T Consensus 110 ~eD~~~I~~aieyl~L~~l~dr---------yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 110 KEDRRIINEAIEYLHLEDLSDR---------YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred hHHHHHHHHHHHHhcccchHHH---------hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHH
Confidence 2233446788888877765544 2356999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+++|-|+..++ .|+|+|+-|++|+.
T Consensus 181 la~el~KtiviVlHDINfAS~YsD~IVAlK~G~v 214 (252)
T COG4604 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKV 214 (252)
T ss_pred HHHHhCCeEEEEEecccHHHhhhhheeeecCCEE
Confidence 599999999999887 58999999999975
No 336
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.7e-33 Score=321.94 Aligned_cols=228 Identities=25% Similarity=0.294 Sum_probs=169.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+
T Consensus 3 ~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~---------------- 64 (530)
T COG0488 3 MITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------------- 64 (530)
T ss_pred eEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC----------------
Confidence 589999999995 67899999999999999999999999999999999999999999998620
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCcc-ccchhhHHHHhcCCccchhhhhhhhh-hccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTE-EVKPASDAAKSAGLVPFLTSAQKLEN-VGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~-~~~~~~~aa~~~~~~~~i~~~~~~~~-~~~~ 654 (788)
-..++|++|++.+.+. |+.+.+.-+.... ......+++......+.......++. ..+.
T Consensus 65 ------------------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 126 (530)
T COG0488 65 ------------------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126 (530)
T ss_pred ------------------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhh
Confidence 0239999999999965 9999998764331 11111111111000010011111111 1111
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.++..+|..+++... .....+||||||-|++|||||+.+|++|+|||||++||.++..++.+.|
T Consensus 127 ~~~~~e~~~~~~L~gLg~~~~----------~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L 196 (530)
T COG0488 127 DGWTLEARAEEALLGLGFPDE----------DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL 196 (530)
T ss_pred cccchHHHHHHHHhcCCCCcc----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 112233456666665554432 2345679999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCCe
Q 040758 735 EA-AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSNW 772 (788)
Q Consensus 735 ~~-~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~~ 772 (788)
.+ .| |+|+||||..++ +.|++|+.++.|+...-.|||
T Consensus 197 ~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 197 KRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 87 56 999999999877 579999999999775555554
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.5e-33 Score=332.52 Aligned_cols=201 Identities=22% Similarity=0.303 Sum_probs=158.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ . +
T Consensus 318 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~-~---~---------- 381 (635)
T PRK11147 318 IVFEMENVNYQID--GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG-T---K---------- 381 (635)
T ss_pred ceEEEeeeEEEEC--CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC-C---C----------
Confidence 3699999999996 4579999999999999999999999999999999999999999999872 1 0
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc-ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
-.|||++|++ .++. .|+.||+.++......
T Consensus 382 --------------------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~---------------------------- 413 (635)
T PRK11147 382 --------------------LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMV---------------------------- 413 (635)
T ss_pred --------------------cEEEEEeCcccccCCCCCHHHHHHhhcccccc----------------------------
Confidence 1399999986 3554 5999999764211000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....++.+.+..+++.. +........||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 414 --~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 483 (635)
T PRK11147 414 --NGRPRHVLGYLQDFLFHP--------KRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELL 483 (635)
T ss_pred --cchHHHHHHHHHhcCCCH--------HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 001234555666555421 0112345679999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchh-hcCCEEEEEc-cCCCCCCCCC
Q 040758 735 EAAGITYISVGHRRTLY-DFHKRVLRIS-TVDQNSSQSN 771 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~-~~~D~Ilvl~-~g~~~~~~~~ 771 (788)
++.+.|+|+|||+.+.+ ..||+|++|+ +|+...-.|+
T Consensus 484 ~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 484 DSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCC
Confidence 88677999999998765 6799999997 7865433333
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=332.08 Aligned_cols=220 Identities=18% Similarity=0.195 Sum_probs=158.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 ~i~i~nls~~~g--~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--------------- 63 (638)
T PRK10636 1 MIVFSSLQIRRG--VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--------------- 63 (638)
T ss_pred CEEEEEEEEEeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------
Confidence 388999999995 467999999999999999999999999999999999999999999998421
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhH---HHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD---AAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~---aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
..++|++|++..+..|+.+.+.-+... ...... ..........+..... .....
T Consensus 64 -------------------~~i~~~~q~~~~~~~~~~~~v~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 120 (638)
T PRK10636 64 -------------------WQLAWVNQETPALPQPALEYVIDGDRE--YRQLEAQLHDANERNDGHAIATIHG--KLDAI 120 (638)
T ss_pred -------------------CEEEEEecCCCCCCCCHHHHHHHhhHH--HHHHHHHHHHHhccCCHHHHHHHHH--HHHhc
Confidence 128899997655555666655321100 000000 0000000000000000 00000
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......++.++|+.+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 121 ~~~~~~~~~~~~L~~lgl~~~~~---------~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~ 191 (638)
T PRK10636 121 DAWTIRSRAASLLHGLGFSNEQL---------ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191 (638)
T ss_pred CCcchHHHHHHHHHhCCCCchhh---------cCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH
Confidence 1112234677778877764 121 234567999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
|.+.+.|+|+|||++..+ ..||+|++|++|+..
T Consensus 192 L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 192 LKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred HHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 988788999999998765 579999999998763
No 339
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.2e-33 Score=327.42 Aligned_cols=207 Identities=23% Similarity=0.323 Sum_probs=156.6
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+.....
T Consensus 267 ~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-------- 331 (510)
T PRK15439 267 PVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALS-------- 331 (510)
T ss_pred ceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCC--------
Confidence 3699999983 1599999999999999999999999999999999999999999999643321110
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+.+|+|+||++ .+|. .|+.+|+....... . .+ .
T Consensus 332 --------------~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~-~-------------~~----------~ 373 (510)
T PRK15439 332 --------------TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR-R-------------GF----------W 373 (510)
T ss_pred --------------HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh-h-------------cc----------c
Confidence 0011245699999985 3564 49999985321000 0 00 0
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.+.++.+++. ... ......||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 374 -~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~ 443 (510)
T PRK15439 374 -IKPARENAVLERYRRALNIKFNHA---------EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443 (510)
T ss_pred -cChHHHHHHHHHHHHHcCCCCCCc---------cCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHH
Confidence 00000123456777777664 222 3346779999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
+.|++ .|.|+|+|||+++.+ ++||++++|++|+..
T Consensus 444 ~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 444 QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482 (510)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 98864 589999999998765 689999999998653
No 340
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.2e-33 Score=333.96 Aligned_cols=197 Identities=25% Similarity=0.349 Sum_probs=156.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||. ++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~---~~~-------------------- 93 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM---PID-------------------- 93 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE---ECC--------------------
Confidence 567999999999999999999999999999999999999885 799999643 221
Q ss_pred hcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHH
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 667 (788)
....++.+|||+|++.++. .||+||+.|+........ + ......+.+.+.+
T Consensus 94 ---~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~-------------~------------~~~~~~~~v~~~l 145 (617)
T TIGR00955 94 ---AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR-------------V------------TKKEKRERVDEVL 145 (617)
T ss_pred ---HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC-------------C------------CHHHHHHHHHHHH
Confidence 0124567999999999995 599999987532110000 0 0001123567778
Q ss_pred HhcccccccccCCCcccc-cc--CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEE
Q 040758 668 EDVKLGYILPRLNSLDTT-YE--WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITY 741 (788)
Q Consensus 668 ~~~~l~~~~~~~~g~~t~-~e--~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~Tv 741 (788)
+.+++.+. .|+. ++ .+..||||||||++|||+|+.+|++|+||||||+||+.+...+.+.|++ .|+|+
T Consensus 146 ~~lgL~~~------~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tv 219 (617)
T TIGR00955 146 QALGLRKC------ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219 (617)
T ss_pred HHcCchhc------CcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEE
Confidence 88777643 3454 44 2467999999999999999999999999999999999999999998875 59999
Q ss_pred EEEecCcc--hhhcCCEEEEEccCCC
Q 040758 742 ISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 742 I~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
|+++|+++ +.+.+|++++|++|+.
T Consensus 220 i~~~hq~~~~i~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 220 ICTIHQPSSELFELFDKIILMAEGRV 245 (617)
T ss_pred EEEeCCCCHHHHHHhceEEEeeCCeE
Confidence 99999975 5689999999999864
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-33 Score=280.02 Aligned_cols=142 Identities=25% Similarity=0.282 Sum_probs=124.5
Q ss_pred eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcc
Q 040758 502 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNS 581 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~ 581 (788)
.||+++|+ ++++++| +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~~--~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------------- 60 (177)
T cd03222 4 PDCVKRYG--VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-------------------- 60 (177)
T ss_pred CCeEEEEC--CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC--------------------
Confidence 57889995 4578888 499999999999999999999999999999999999999842
Q ss_pred cccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChH
Q 040758 582 QNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD 661 (788)
Q Consensus 582 ~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 661 (788)
..++|++|++.
T Consensus 61 ---------------~~i~~~~q~~~------------------------------------------------------ 71 (177)
T cd03222 61 ---------------ITPVYKPQYID------------------------------------------------------ 71 (177)
T ss_pred ---------------EEEEEEcccCC------------------------------------------------------
Confidence 12788877530
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---A- 737 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~- 737 (788)
||||||||++|||||+.+|++++|||||++||+.+...+.+.+.+ .
T Consensus 72 ------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~ 121 (177)
T cd03222 72 ------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG 121 (177)
T ss_pred ------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999888864 3
Q ss_pred CCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 738 GITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 738 g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
++|+|++||+++.+. .||++++|+++..
T Consensus 122 ~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 122 KKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 489999999987664 7999999997643
No 342
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.7e-33 Score=330.56 Aligned_cols=194 Identities=20% Similarity=0.254 Sum_probs=153.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|++ ++++|+|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.+++
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~--------------- 570 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--------------- 570 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC---------------
Confidence 46999999999963 44699999999999999999999999999999999999999999998721
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+..|||++|++. ...++.+|.... ..+ ...
T Consensus 571 -------------------~~~igyv~Q~~~-~~l~~~~~~~~~-----------~~~-------------------~~~ 600 (718)
T PLN03073 571 -------------------KVRMAVFSQHHV-DGLDLSSNPLLY-----------MMR-------------------CFP 600 (718)
T ss_pred -------------------ceeEEEEecccc-ccCCcchhHHHH-----------HHH-------------------hcC
Confidence 134999999862 222344432110 000 000
Q ss_pred CCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++.+.|+.+++.. .. ...+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|.
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~---------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~ 671 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLA---------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV 671 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHh---------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 112356677788777642 11 23467799999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 AAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|+|+|||++..+ ..||++++|++|+.
T Consensus 672 ~~~gtvIivSHd~~~i~~~~drv~~l~~G~i 702 (718)
T PLN03073 672 LFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702 (718)
T ss_pred HcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 7555999999998766 57999999999865
No 343
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-33 Score=329.06 Aligned_cols=191 Identities=21% Similarity=0.270 Sum_probs=153.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 311 ~~l~~~~l~~~y~--~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 373 (638)
T PRK10636 311 PLLKMEKVSAGYG--DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK--------------- 373 (638)
T ss_pred ceEEEEeeEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC---------------
Confidence 3699999999996 46799999999999999999999999999999999999999999999730
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
...+||++|++ .+.. .|+.+++....
T Consensus 374 -------------------~~~igy~~Q~~~~~l~~~~~~~~~~~~~~-------------------------------- 402 (638)
T PRK10636 374 -------------------GIKLGYFAQHQLEFLRADESPLQHLARLA-------------------------------- 402 (638)
T ss_pred -------------------CEEEEEecCcchhhCCccchHHHHHHHhC--------------------------------
Confidence 02499999985 2332 35555542100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......++.+.|+.+++... ........|||||||||+|||+|+.+|++|||||||++||+.+...+.+.
T Consensus 403 --~~~~~~~~~~~L~~~~l~~~--------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~ 472 (638)
T PRK10636 403 --PQELEQKLRDYLGGFGFQGD--------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA 472 (638)
T ss_pred --chhhHHHHHHHHHHcCCChh--------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00112445667777655310 11234567999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|.+.+.|+|+|||++..+ +.||+|++|++|+.
T Consensus 473 L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i 505 (638)
T PRK10636 473 LIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505 (638)
T ss_pred HHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 988666999999998765 57999999999975
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.5e-33 Score=325.07 Aligned_cols=185 Identities=24% Similarity=0.237 Sum_probs=152.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---------------- 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---------------- 399 (590)
T ss_pred eEEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------------
Confidence 36999999999953 35999999999999999999999999999999999999999999862
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..++|+||++.++ +.|++||+.++....
T Consensus 400 --------------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~------------------------------- 428 (590)
T PRK13409 400 --------------------LKISYKPQYIKPDYDGTVEDLLRSITDDL------------------------------- 428 (590)
T ss_pred --------------------eeEEEecccccCCCCCcHHHHHHHHhhhc-------------------------------
Confidence 1389999998765 569999997641100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.......++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 429 --~~~~~~~~~L~~l~l~~~~---------~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 429 --GSSYYKSEIIKPLQLERLL---------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred --ChHHHHHHHHHHCCCHHHH---------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0112345667776664322 23467799999999999999999999999999999999999999999886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||++++|++
T Consensus 498 ~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 498 RIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 4 389999999998765 57999999975
No 345
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=4.9e-33 Score=352.43 Aligned_cols=208 Identities=19% Similarity=0.293 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCC--CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPT--SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~--~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.++++||++.|+. +++.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||.+ +.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~---~~---- 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP---LD---- 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE---CC----
Confidence 5899999999852 34579999999999999999999999999999999999998 788999996432 21
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
...|+.+|||+|++.++ ..|++||+.++..... +.
T Consensus 832 --------------------~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~--------------~~---------- 867 (1394)
T TIGR00956 832 --------------------SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQ--------------PK---------- 867 (1394)
T ss_pred --------------------hhhhcceeeecccccCCCCCCHHHHHHHHHHhCC--------------CC----------
Confidence 12456799999987654 5799999987421000 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCC-EEEEecCCCCCCHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQ-IVLLDESTSALDEANEAH 729 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~-iLiLDEpTSaLD~~se~~ 729 (788)
........+.+.++++.+++.... |+. ++.+..||||||||++|||||+.+|+ +|+||||||+||+.+...
T Consensus 868 -~~~~~~~~~~v~~~l~~l~L~~~~------d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~ 940 (1394)
T TIGR00956 868 -SVSKSEKMEYVEEVIKLLEMESYA------DAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 940 (1394)
T ss_pred -CCCHHHHHHHHHHHHHHcCChhhC------CCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Confidence 000000123466788888776443 333 55566899999999999999999997 999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcch--hhcCCEEEEEccC
Q 040758 730 LYEQIEA---AGITYISVGHRRTL--YDFHKRVLRISTV 763 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~--~~~~D~Ilvl~~g 763 (788)
+.+.|++ .|+|+|+++|+++. .+.+|++++|++|
T Consensus 941 i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 941 ICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 9998865 58999999999875 3679999999987
No 346
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=2e-33 Score=307.43 Aligned_cols=173 Identities=28% Similarity=0.383 Sum_probs=135.6
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCC
Q 040758 531 VMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610 (788)
Q Consensus 531 IvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~ 610 (788)
|+||||||||||+++|+|+++|++|+|.++|.+..+. ...+++++|++|++.+|.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~-------------------------~~~~~~i~~v~q~~~l~~ 55 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV-------------------------PPHLRHINMVFQSYALFP 55 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC-------------------------CHHHCCEEEEecCccccC
Confidence 6899999999999999999999999999965432111 012456999999999996
Q ss_pred C-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCC
Q 040758 611 G-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689 (788)
Q Consensus 611 ~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g 689 (788)
. |++||+.|+...... ......+++.++++.+++....+ ...
T Consensus 56 ~~tv~enl~~~~~~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~---------~~~ 98 (325)
T TIGR01187 56 HMTVEENVAFGLKMRKV----------------------------PRAEIKPRVLEALRLVQLEEFAD---------RKP 98 (325)
T ss_pred CCcHHHHHHHHHhhcCC----------------------------CHHHHHHHHHHHHHHcCCcchhc---------CCh
Confidence 5 999999875210000 00001234667777777654332 345
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcch-hhcCCEEEEEccCC
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTL-YDFHKRVLRISTVD 764 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~ 764 (788)
.+||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|+|||+++. ...||+|++|++|+
T Consensus 99 ~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~ 178 (325)
T TIGR01187 99 HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178 (325)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 67999999999999999999999999999999999999999988864 38999999999865 56899999999996
Q ss_pred C
Q 040758 765 Q 765 (788)
Q Consensus 765 ~ 765 (788)
.
T Consensus 179 i 179 (325)
T TIGR01187 179 I 179 (325)
T ss_pred E
Confidence 4
No 347
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.8e-33 Score=281.29 Aligned_cols=214 Identities=20% Similarity=0.312 Sum_probs=161.4
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++||+++|. ++++|+|+|++|++||+++|+||||||||||+++++|.++|++|.+.+.|+.-...
T Consensus 29 ~~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~-------- 98 (257)
T COG1119 29 EPLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG-------- 98 (257)
T ss_pred cceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC--------
Confidence 34699999999995 67899999999999999999999999999999999999999999999864421111
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc---ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
... .++|++||+|+-+- +.-+.+++|-+.-|-.. .+ ++.
T Consensus 99 -------------~~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~-----------------si-------G~y 140 (257)
T COG1119 99 -------------ETI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFA-----------------SI-------GIY 140 (257)
T ss_pred -------------cch-HHHHHHhCccCHHHHhhcccccccceeeeecccc-----------------cc-------ccc
Confidence 111 35678899997532 22334555555432111 00 011
Q ss_pred c-CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 R-KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~-~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
. .......+++...++.+++....++ .-..||-|||||+-|||||+++|++|||||||++||....+.+.
T Consensus 141 ~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll 211 (257)
T COG1119 141 QEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211 (257)
T ss_pred ccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 0 1111223456677888777665544 34579999999999999999999999999999999999999988
Q ss_pred HHHHh-----cCCEEEEEecCcc-hhhcCCEEEEEccCCCC
Q 040758 732 EQIEA-----AGITYISVGHRRT-LYDFHKRVLRISTVDQN 766 (788)
Q Consensus 732 ~~L~~-----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~~ 766 (788)
+.|.+ .+.|+|+|||..+ +....++++.+++|+..
T Consensus 212 ~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred HHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 88864 3788999999975 55778999999998754
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=292.85 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcC--CCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTP--TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~--~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.++++|+++.|. ++...++++|||+|++||++||||+||||||-..+.++|+++. -+|+|.++|.|.-...
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s-- 83 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS-- 83 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC--
Confidence 589999988774 3345799999999999999999999999999999999999875 3699999655433221
Q ss_pred CCccchhhhcccccccchhcccccCc-ceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNS-RGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
+..++..| ..|+++||||.--- -||..+|. +..+ .|.
T Consensus 84 ------------------e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~------------E~l~---~Hr------ 124 (534)
T COG4172 84 ------------------ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLA------------EVLR---LHR------ 124 (534)
T ss_pred ------------------HHHHhhhcccceEEEecccccccCcHhHHHHHHH------------HHHH---HHh------
Confidence 12233344 45999999995321 14433332 1100 000
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
+ ....+..+++.+.|+.+|+.+-..++ ..++.+|||||||||.||.||+.+|++||.||||.|||...
T Consensus 125 ---g---~~~~~Ar~r~lelL~~VgI~~p~~rl------~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtv 192 (534)
T COG4172 125 ---G---LSRAAARARALELLELVGIPEPEKRL------DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192 (534)
T ss_pred ---c---ccHHHHHHHHHHHHHHcCCCchhhhh------hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhh
Confidence 0 01122346788889999887544433 34577899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|.+.|++ .|..+++|||+++++ ++||||+||.+|+.
T Consensus 193 QaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 193 QAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred HHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999998864 599999999999987 57999999999975
No 349
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=1.1e-32 Score=284.23 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=132.3
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-EeeccCcccccCCCccchhhhcccccccchhcccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT-FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMN 593 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (788)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +++ ..+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~---~~~-------------------------- 52 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG---DAL-------------------------- 52 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecC---cee--------------------------
Confidence 78999999999999999999999999999999999999999997 521 110
Q ss_pred cCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHH-HHhcc
Q 040758 594 RNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVK 671 (788)
Q Consensus 594 ~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 671 (788)
.+.|++.+|+. |++||+.+....... ...++.+. .+..+
T Consensus 53 -------~~~~~~~l~~~ltv~enl~~~~~~~~~--------------------------------~~~~~~~~~~~~~~ 93 (213)
T PRK15177 53 -------PLGANSFILPGLTGEENARMMASLYGL--------------------------------DGDEFSHFCYQLTQ 93 (213)
T ss_pred -------ccccccccCCcCcHHHHHHHHHHHcCC--------------------------------CHHHHHHHHHHHhC
Confidence 12356667764 999999763110000 01111111 12222
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
++.. .......||||||||++|||||+++|+++||||||+++|+.+...+.+.+.+ +++|+|++||+++
T Consensus 94 l~~~---------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~ 164 (213)
T PRK15177 94 LEQC---------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR 164 (213)
T ss_pred hhHH---------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH
Confidence 2211 1233456999999999999999999999999999999999999999987743 5789999999987
Q ss_pred hh-hcCCEEEEEccCCC
Q 040758 750 LY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 750 ~~-~~~D~Ilvl~~g~~ 765 (788)
.+ ++||++++|++|+.
T Consensus 165 ~~~~~~d~i~~l~~G~i 181 (213)
T PRK15177 165 LIKEHCHAFGVLLHGKI 181 (213)
T ss_pred HHHHhcCeeEEEECCeE
Confidence 66 58999999999864
No 350
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-32 Score=268.02 Aligned_cols=152 Identities=38% Similarity=0.552 Sum_probs=127.1
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
++|++|+|++ +++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~------------- 66 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL------------- 66 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC-------------
Confidence 6899999963 4799999999999999999999999999999999999999999999954321110
Q ss_pred ccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCCh
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST 660 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~ 660 (788)
.....++.++|++|
T Consensus 67 ----------~~~~~~~~i~~~~q-------------------------------------------------------- 80 (157)
T cd00267 67 ----------PLEELRRRIGYVPQ-------------------------------------------------------- 80 (157)
T ss_pred ----------CHHHHHhceEEEee--------------------------------------------------------
Confidence 00012233555443
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---A 737 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~ 737 (788)
|||||+||++||||++.+|++++|||||++||.++...+.+.+.+ .
T Consensus 81 -------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 81 -------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred -------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 799999999999999999999999999999999999999988864 4
Q ss_pred CCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 738 GITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 738 g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
++|+|++||+++.+. .||++++|++|+
T Consensus 130 ~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 130 GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 689999999987765 579999999864
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3e-32 Score=323.29 Aligned_cols=222 Identities=22% Similarity=0.243 Sum_probs=155.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~ls~~~~--~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--------------- 65 (635)
T PRK11147 3 LISIHGAWLSFS--DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--------------- 65 (635)
T ss_pred EEEEeeEEEEeC--CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC---------------
Confidence 589999999996 457999999999999999999999999999999999999999999998420
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCcc-ccchhhHHHH-hcCC---ccchhhhhhh-hh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTE-EVKPASDAAK-SAGL---VPFLTSAQKL-EN 650 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~-~~~~~~~aa~-~~~~---~~~i~~~~~~-~~ 650 (788)
..+++++|++... .+++.+++..+.... .......... .... ...+.....+ ..
T Consensus 66 -------------------~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (635)
T PRK11147 66 -------------------LIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQ 126 (635)
T ss_pred -------------------CEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 1267778765432 356666653221000 0000000000 0000 0000000000 00
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
...........++.++++.+++.. .....+|||||||||+|||||+.+|++|||||||++||+.+...+
T Consensus 127 ~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L 195 (635)
T PRK11147 127 LDHHNLWQLENRINEVLAQLGLDP-----------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL 195 (635)
T ss_pred HHhcCcccHHHHHHHHHHhCCCCC-----------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHH
Confidence 000111122345677787776531 223567999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 731 YEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 731 ~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.+.|.+.+.|+|+|||+...+ ..||+|++|++|+..
T Consensus 196 ~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 196 EGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999988667999999998766 579999999998754
No 352
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=5.5e-32 Score=253.19 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=158.3
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~ 573 (788)
+++.++||+.+.| ++.+|.++||+|.+||++-|+||||||||||+.-+.|...++ +|++++|+++ ++
T Consensus 1 ~~l~l~nvsl~l~--g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~---l~----- 70 (213)
T COG4136 1 GMLCLKNVSLRLP--GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR---LD----- 70 (213)
T ss_pred CceeeeeeeecCC--CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCee---cc-----
Confidence 3588999999886 567899999999999999999999999999999999999876 7999995433 21
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+...++++|+++||+.||+ -+|-+|+.|.-+. ++ ++
T Consensus 71 -----------------~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~-~~----------------KG-------- 108 (213)
T COG4136 71 -----------------MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPA-TL----------------KG-------- 108 (213)
T ss_pred -----------------ccchhhhheeeeecccccccccccccceEEecCc-cc----------------cc--------
Confidence 12244678999999999996 5999999985432 11 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH--
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL-- 730 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i-- 730 (788)
.+.......+|++.+++... +..+.+||||||-|||+-|+|+..|+.++||||+|.||..-....
T Consensus 109 ----~aRr~~a~aAL~~~gL~g~f---------~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~ 175 (213)
T COG4136 109 ----NARRNAANAALERSGLDGAF---------HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ 175 (213)
T ss_pred ----HHHHhhHHHHHHHhccchhh---------hcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHH
Confidence 01223456678877665432 334678999999999999999999999999999999999877654
Q ss_pred --HHHHHhcCCEEEEEecCcchhhcCCEEEEEc
Q 040758 731 --YEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 731 --~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
+..++..|..+|.+||+..-+....|++.|-
T Consensus 176 wVFs~~r~agiPtv~VTHD~~DvpagsrVie~~ 208 (213)
T COG4136 176 WVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEMA 208 (213)
T ss_pred HHHHHHHhcCCCeEEEecccccCCCCCeeeeee
Confidence 4455668999999999987776667887764
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.1e-31 Score=265.77 Aligned_cols=155 Identities=28% Similarity=0.327 Sum_probs=123.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
..++|+|+||+|++|++++|+||||||||||+|++. +++|++.+++.. -
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~---~------------------------ 55 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL---P------------------------ 55 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc---c------------------------
Confidence 457899999999999999999999999999999986 369999884210 0
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
...++.++|++| .+ .++.++
T Consensus 56 -~~~~~~~~~~~q---------~~--------------------------------------------------~l~~~~ 75 (176)
T cd03238 56 -KFSRNKLIFIDQ---------LQ--------------------------------------------------FLIDVG 75 (176)
T ss_pred -ccccccEEEEhH---------HH--------------------------------------------------HHHHcC
Confidence 011234778777 01 122222
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccC--CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEec
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK--PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGH 746 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~--p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaH 746 (788)
+.+ .+...+..+||||||||++|||||+++ |+++||||||++||+++.+.+.+.|++ .|+|+|+|||
T Consensus 76 L~~--------~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 76 LGY--------LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred CCc--------cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 211 012344677999999999999999999 999999999999999999999988865 5999999999
Q ss_pred CcchhhcCCEEEEEccCCC
Q 040758 747 RRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 747 r~~~~~~~D~Ilvl~~g~~ 765 (788)
+++.+..||++++|++|..
T Consensus 148 ~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 148 NLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHhCCEEEEECCCCC
Confidence 9988889999999998743
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=1.7e-31 Score=337.56 Aligned_cols=211 Identities=21% Similarity=0.271 Sum_probs=161.3
Q ss_pred cEEEeeeEEEcCC-----------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccC
Q 040758 498 LLDIEDLTLKTPT-----------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDR 564 (788)
Q Consensus 498 ~I~~~nvsf~y~~-----------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~ 564 (788)
.+.++||++..+. +++.+|+|+|++++||+++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~- 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP- 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc-
Confidence 6999999998742 134699999999999999999999999999999999999874 68999995432
Q ss_pred cccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 565 EETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 565 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
.. ....++.+|||+|++.++. .|++||+.|+.... .....
T Consensus 946 --~~-----------------------~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr-------------~~~~~- 986 (1470)
T PLN03140 946 --KK-----------------------QETFARISGYCEQNDIHSPQVTVRESLIYSAFLR-------------LPKEV- 986 (1470)
T ss_pred --CC-----------------------hHHhhhheEEEccccccCCCCcHHHHHHHHHHhC-------------CCCCC-
Confidence 21 0123456999999988775 59999998742100 00000
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccccc-CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYE-WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e-~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaL 722 (788)
......+.+.+.++.+++....+.. .+. ....||||||||++|||+|+.+|++|+||||||+|
T Consensus 987 -----------~~~~~~~~v~~vl~~lgL~~~~~~~-----vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 987 -----------SKEEKMMFVDEVMELVELDNLKDAI-----VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred -----------CHHHHHHHHHHHHHHCCChhHhCCc-----cCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 0000123466778888776543321 122 23579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEcc-CC
Q 040758 723 DEANEAHLYEQIEA---AGITYISVGHRRT--LYDFHKRVLRIST-VD 764 (788)
Q Consensus 723 D~~se~~i~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~-g~ 764 (788)
|+.+...+.+.|++ .|+|+|+++|+++ ..+.+|++++|++ |+
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 99999999998865 5999999999987 3578999999997 54
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=5.2e-32 Score=316.88 Aligned_cols=192 Identities=22% Similarity=0.237 Sum_probs=146.7
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------EeeccCcccccCC
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT-----------FYVKDREETDAHT 571 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~-----------~~~~~~~~i~~~~ 571 (788)
+++++|+. +..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.+..+.
T Consensus 78 ~~~~~yg~-~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~---- 151 (590)
T PRK13409 78 EPVHRYGV-NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY---- 151 (590)
T ss_pred CceEEecC-CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH----
Confidence 37888963 346899999 9999999999999999999999999999999999997 532221110
Q ss_pred CccchhhhcccccccchhcccccCcce----EEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRG----VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~----i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.. .....+.. +.+++|.|.+|.+|++||+.+..
T Consensus 152 ----------------~~-~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-------------------------- 188 (590)
T PRK13409 152 ----------------FK-KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-------------------------- 188 (590)
T ss_pred ----------------HH-HHhccCcceeecccchhhhhhhhcchHHHHHHhhh--------------------------
Confidence 00 00011122 44555666777789999885310
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
..+++.++++.+++.... .....+||||||||++|||||+++|++||||||||+||+.+.
T Consensus 189 -----------~~~~~~~~l~~l~l~~~~---------~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~ 248 (590)
T PRK13409 189 -----------ERGKLDEVVERLGLENIL---------DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248 (590)
T ss_pred -----------HHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 113456677777665332 234567999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 728 AHLYEQIEAA--GITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 728 ~~i~~~L~~~--g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
..+.+.|++. |+|+|+|+|+++.+ ..||++++|.++
T Consensus 249 ~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 249 LNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999888653 99999999998765 579999999763
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=99.97 E-value=1.8e-31 Score=317.74 Aligned_cols=237 Identities=18% Similarity=0.182 Sum_probs=158.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEEeeccC--cccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW---SDGRGKITFYVKDR--EETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~---~p~~G~I~~~~~~~--~~i~~~~ 571 (788)
..|+++|++|+|+ ++++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+...+. .+.+
T Consensus 176 ~~I~i~nls~~y~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t--- 250 (718)
T PLN03073 176 KDIHMENFSISVG--GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT--- 250 (718)
T ss_pred eeEEEceEEEEeC--CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC---
Confidence 4699999999996 456999999999999999999999999999999999864 58899998742211 0000
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcc-ccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTE-EVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~-~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
+ .+ .+..........+++.+++++|++.+...+..+|...+.... +.+++.+.. .. -++.
T Consensus 251 --~----~~--~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~--~~---------~~~~ 311 (718)
T PLN03073 251 --A----LQ--CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRL--EE---------IYKR 311 (718)
T ss_pred --H----HH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHH--HH---------HHHH
Confidence 0 00 000000000011234478888887654334444432221100 000000000 00 0111
Q ss_pred hccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
++........+++.++|..+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+...
T Consensus 312 ~~~~~~~~~~~r~~~~L~~lgl~~~~~---------~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~ 382 (718)
T PLN03073 312 LELIDAYTAEARAASILAGLSFTPEMQ---------VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLW 382 (718)
T ss_pred HHhcCcchHHHHHHHHHHHCCCChHHH---------hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 11111222345677777777664 111 22356799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 730 LYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 730 i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
+.+.|++.+.|+|+|||+++.+ ..||+|++|++|+..
T Consensus 383 l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i~ 420 (718)
T PLN03073 383 LETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLV 420 (718)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999998899999999998776 569999999998753
No 357
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-30 Score=259.99 Aligned_cols=213 Identities=27% Similarity=0.359 Sum_probs=166.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+++++|++.+-.+ ++++|+++||+|++||+.+|.||||||||||.+.|+|. |.+++|+|.++|.|..++.
T Consensus 3 ~L~I~dLhv~v~~-~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~------- 74 (251)
T COG0396 3 MLEIKDLHVEVEG-KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS------- 74 (251)
T ss_pred eeEEeeeEEEecC-chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC-------
Confidence 5899999999853 25899999999999999999999999999999999997 6899999999776665552
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+.++.|..|.+.+|.|.=++| |+.+-++.... +.+...- +
T Consensus 75 ---------------~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n---------~~~~~~~---~------------ 115 (251)
T COG0396 75 ---------------PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMN---------ARRGARG---I------------ 115 (251)
T ss_pred ---------------HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHH---------hhhcccc---c------------
Confidence 223567889999999998887 77766643211 0000000 0
Q ss_pred CCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......++.++++.++++. +++|. + ...+|||||.|..|+.+++-+|++.|||||-|+||.++-+.|-+.
T Consensus 116 -~~~~~~~~~e~~~~l~~~~~~l~R~-----v---N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~ 186 (251)
T COG0396 116 -LPEFIKELKEKAELLGLDEEFLERY-----V---NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186 (251)
T ss_pred -cHHHHHHHHHHHHHcCCCHHHhhcc-----c---CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHH
Confidence 0012345677788887764 33331 1 123999999999999999999999999999999999999988776
Q ss_pred HH---hcCCEEEEEecCcchhhcC--CEEEEEccCCCC
Q 040758 734 IE---AAGITYISVGHRRTLYDFH--KRVLRISTVDQN 766 (788)
Q Consensus 734 L~---~~g~TvI~IaHr~~~~~~~--D~Ilvl~~g~~~ 766 (788)
++ +.|.++++|||...++.+. |++.+|-+|+..
T Consensus 187 i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 187 INALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred HHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 54 5799999999998888775 999999999763
No 358
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.5e-30 Score=249.04 Aligned_cols=220 Identities=25% Similarity=0.360 Sum_probs=163.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++++|+.|. +..-.+|+||++.|||.++|||+||||||||+++|++-..|+.|+|.+...++....+.
T Consensus 6 LL~V~~lsk~Yg--~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~------- 76 (258)
T COG4107 6 LLSVSGLSKLYG--PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY------- 76 (258)
T ss_pred ceeehhhhhhhC--CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh-------
Confidence 689999999996 34578999999999999999999999999999999999999999999976655443210
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.+ .+ .....-.|...|+|.|+| +|-+++.-... ++.-+.++ .++.+...
T Consensus 77 ~m-----sE--aeRR~L~RTeWG~VhQnP-------~DGLRm~VSAG-----------~NiGERlm------a~G~RHYG 125 (258)
T COG4107 77 TM-----SE--AERRRLLRTEWGFVHQNP-------RDGLRMQVSAG-----------GNIGERLM------AIGARHYG 125 (258)
T ss_pred hh-----ch--HHHHHHhhhccceeecCc-------cccceeeeccC-----------CccchhHH------hhhhhhhh
Confidence 00 00 001112356689999999 34444321110 11111111 12222222
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.-.++..+.|+++.++. +..++.+..+|||++||+.|||-|+..|+++++||||-+||...++.+.+.++.
T Consensus 126 ~iR~~a~~WL~~VEI~~--------~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgL 197 (258)
T COG4107 126 NIRAEAQDWLEEVEIDL--------DRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred hHHHHHHHHHHhcccCc--------ccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHH
Confidence 22355667788776652 234566788999999999999999999999999999999999999999988763
Q ss_pred ---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|..++++||++..++ .+||..||.+|..
T Consensus 198 v~~l~la~viVTHDl~VarLla~rlmvmk~g~v 230 (258)
T COG4107 198 VRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230 (258)
T ss_pred HHhcCceEEEEechhHHHHHhhhcceeecCCCE
Confidence 6999999999999886 5899999999864
No 359
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=261.84 Aligned_cols=201 Identities=26% Similarity=0.355 Sum_probs=151.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++|+++||+|++|+++-|+|.||||||||++.|+|-..|++|+|.+||.|.....
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~----------------------- 74 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS----------------------- 74 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCC-----------------------
Confidence 568999999999999999999999999999999999999999999999655433221
Q ss_pred cccCcceEEEEcccccc--C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH
Q 040758 592 MNRNSRGVFFLPQRPYM--V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~l--f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (788)
.......++-|+|||-. + +.||.||+....... +.-++..-+ ...-.+.+.+.+.
T Consensus 75 ~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg---------~~rgl~~~l-------------n~~~~~~f~~~l~ 132 (263)
T COG1101 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRG---------KKRGLSSAL-------------NERRRSSFRERLA 132 (263)
T ss_pred HHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC---------cccccchhh-------------hHHHHHHHHHHHh
Confidence 11112348889999954 2 459999997632110 001111100 0111244566666
Q ss_pred hcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH----HhcCCEEEE
Q 040758 669 DVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYIS 743 (788)
Q Consensus 669 ~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L----~~~g~TvI~ 743 (788)
.++++ ++- ...+..-|||||||-++++-|-++.|+||+|||=|+||||.+...|++.- .+.+.|.++
T Consensus 133 ~l~lg--------LenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlM 204 (263)
T COG1101 133 RLGLG--------LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM 204 (263)
T ss_pred hcccc--------hhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEE
Confidence 65543 222 24455679999999999999999999999999999999999999988753 446899999
Q ss_pred EecCcc-hhhcCCEEEEEccCCC
Q 040758 744 VGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
|||.++ .++|.+|.++|++|+.
T Consensus 205 VTHnm~~Al~yG~RlImLh~G~I 227 (263)
T COG1101 205 VTHNMEDALDYGNRLIMLHSGKI 227 (263)
T ss_pred EeccHHHHHhhCCeEEEEeCCeE
Confidence 999974 6799999999999985
No 360
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=253.60 Aligned_cols=216 Identities=19% Similarity=0.290 Sum_probs=167.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|+ +-.+|+|+||++.+||.-+|+|||||||||++..|+|--+|+.|+++++| ..|+.
T Consensus 5 iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g--~~dl~--------- 71 (249)
T COG4674 5 ILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG--DTDLT--------- 71 (249)
T ss_pred eEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcC--chhhc---------
Confidence 589999999996 56799999999999999999999999999999999999999999999964 13332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. ...+..|..||-=||.|..|.. |++||+....... .-+ +..+..+..
T Consensus 72 --------~~--~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~---------------k~v-----~a~L~~r~~ 121 (249)
T COG4674 72 --------KL--PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRD---------------KSV-----FASLFARLR 121 (249)
T ss_pred --------cC--CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCC---------------cch-----HHHhhhhcC
Confidence 00 0112346789999999999975 9999996532110 000 001111222
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.|...++.+..++ ....||-||||++.|+..++++|++|+||||++++-.+.....-+.|+.
T Consensus 122 ~~e~~ride~La~igL~~~~~~---------~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~ 192 (249)
T COG4674 122 AEERRRIDELLATIGLGDERDR---------LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192 (249)
T ss_pred hhHHHHHHHHHHHcccchhhhh---------hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHH
Confidence 3344578888988887654443 3456999999999999999999999999999999976666666666664
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++++++|-||+.++ .+||+|-||+.|..
T Consensus 193 la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred HhcCceEEEEeccHHHHHHhhheeEEEeccce
Confidence 578999999999887 57999999999864
No 361
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.96 E-value=5.5e-30 Score=324.74 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=152.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEEeeccCcccccCCCccchhhhcccccccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW----SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGE 587 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~----~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 587 (788)
++++|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.++|.+..+.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~-------------------- 132 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI-------------------- 132 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH--------------------
Confidence 456999999999999999999999999999999999986 57999999965432111
Q ss_pred hhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC-hHH-HH
Q 040758 588 LTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS-TDD-LI 664 (788)
Q Consensus 588 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~ 664 (788)
. ...|+.++||+|++.++. .|++||+.|+..... +.. . ........ .+. ..
T Consensus 133 ---~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~--------------~~~-------~-~~~~~~~~~~~~~~~ 186 (1394)
T TIGR00956 133 ---K-KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT--------------PQN-------R-PDGVSREEYAKHIAD 186 (1394)
T ss_pred ---H-hhcCceeEEeccccccCCCCCHHHHHHHHHHhCC--------------CCC-------C-CCCCCHHHHHHHHHH
Confidence 1 124567999999988886 599999987421000 000 0 00000000 112 23
Q ss_pred HHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cC
Q 040758 665 KALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AG 738 (788)
Q Consensus 665 ~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g 738 (788)
++++.+++.+.. ++. + +....|||||||||+|||||+.+|++++||||||+||+.+...+.+.|++ .|
T Consensus 187 ~~l~~lgL~~~~------~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g 260 (1394)
T TIGR00956 187 VYMATYGLSHTR------NTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILD 260 (1394)
T ss_pred HHHHHcCccccc------CceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence 467777776543 332 2 34567999999999999999999999999999999999999999998864 38
Q ss_pred CEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 739 ITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 739 ~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
+|+|+++|++ +..+.+|++++|++|+.
T Consensus 261 ~tvii~~Hq~~~~i~~l~D~v~~L~~G~i 289 (1394)
T TIGR00956 261 TTPLVAIYQCSQDAYELFDKVIVLYEGYQ 289 (1394)
T ss_pred CEEEEEecCCCHHHHHhhceEEEEeCCeE
Confidence 9999999996 35678999999999964
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.96 E-value=3.2e-29 Score=286.95 Aligned_cols=190 Identities=25% Similarity=0.324 Sum_probs=155.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...++++|+++.|++ ++++++++||.|++|+++|||||||+|||||+|+|+|-..|.+|+|.+. ..
T Consensus 319 ~~vl~~~~~~~~y~~-~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g----~~--------- 384 (530)
T COG0488 319 KLVLEFENVSKGYDG-GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG----ET--------- 384 (530)
T ss_pred CeeEEEeccccccCC-CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC----Cc---------
Confidence 347999999999974 4689999999999999999999999999999999999999999999871 11
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccc-cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
-.+||.+|+.. ++ +.|+.|++.-..+.
T Consensus 385 ---------------------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~------------------------------ 413 (530)
T COG0488 385 ---------------------VKIGYFDQHRDELDPDKTVLEELSEGFPD------------------------------ 413 (530)
T ss_pred ---------------------eEEEEEEehhhhcCccCcHHHHHHhhCcc------------------------------
Confidence 23999999873 23 33666666432111
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
....++...|..++... +........||||||-|+++|+.++.+|.+|||||||++||.++...+.++
T Consensus 414 ----~~e~~~r~~L~~f~F~~--------~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~a 481 (530)
T COG0488 414 ----GDEQEVRAYLGRFGFTG--------EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEA 481 (530)
T ss_pred ----ccHHHHHHHHHHcCCCh--------HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 11345666777665432 112345677999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
|.+-..|+|+||||..++ +.|++|+.+++
T Consensus 482 L~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 482 LLDFEGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 999889999999999887 46999999996
No 363
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=1.7e-29 Score=319.32 Aligned_cols=221 Identities=20% Similarity=0.264 Sum_probs=154.1
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
++.+|+|+|++|+|||+++|+||||||||||+|+|+|..+|+ +|+|.+||.+..+.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--------------------- 235 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--------------------- 235 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh---------------------
Confidence 356999999999999999999999999999999999999998 99999965432111
Q ss_pred hcccccCcceEEEEccccccCC-CCHHHHhcCCCCcccc-------chhhHHHHhcCCccchhhhhhhhhhccCCCCCCh
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEV-------KPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST 660 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~-------~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~ 660 (788)
..++.++||+|++.++. .|++||+.|+...... .+.....+..+..+.-. ...+............
T Consensus 236 -----~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~-i~~~~~~~~~~~~~~~ 309 (1470)
T PLN03140 236 -----VPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAE-VDLFMKATAMEGVKSS 309 (1470)
T ss_pred -----cccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchh-hHHHHHHhhhhcchhh
Confidence 12467999999987775 5999999874211000 00000001110000000 0000000000000001
Q ss_pred HHHHHHHHhcccccccccCCCcccc--ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTT--YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~--~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..+.+.++.+|+++. .+|. ++....|||||||||+|||+|+.+|++|+|||||++||+.+...+.+.|++
T Consensus 310 ~~~~~~L~~lGL~~~------~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la 383 (1470)
T PLN03140 310 LITDYTLKILGLDIC------KDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV 383 (1470)
T ss_pred HHHHHHHHHcCCccc------cCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHH
Confidence 123456777777543 2332 344567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+++|++ ++.+.+|+|++|++|+.
T Consensus 384 ~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 384 HLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred HhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 489999999985 56788999999999964
No 364
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.9e-29 Score=243.40 Aligned_cols=187 Identities=28% Similarity=0.375 Sum_probs=146.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++.+|++...+ ++.++.++||++.+||.+-|+||||||||||+|+|+|+.+|++|+|.++|.++...
T Consensus 3 L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~----------- 69 (209)
T COG4133 3 LEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV----------- 69 (209)
T ss_pred chhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-----------
Confidence 45667766653 56899999999999999999999999999999999999999999999964443222
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.++.++.+-|+...+-+= ..|+.||+.|=.. +. ..
T Consensus 70 -------------~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~----------------------------~~---~~ 105 (209)
T COG4133 70 -------------RESYHQALLYLGHQPGIKTELTALENLHFWQR----------------------------FH---GS 105 (209)
T ss_pred -------------hhhHHHHHHHhhccccccchhhHHHHHHHHHH----------------------------Hh---CC
Confidence 011234566776666555 4599999987210 00 01
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.+.+.+.++++.+++....+. ...+||-|||.||||||..+..+|+-||||||++||.+.+..+-..+..
T Consensus 106 ~~~~~i~~Al~~vgL~g~~dl---------p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H 176 (209)
T COG4133 106 GNAATIWEALAQVGLAGLEDL---------PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176 (209)
T ss_pred CchhhHHHHHHHcCccccccc---------chhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHH
Confidence 245678899999988765443 3567999999999999999999999999999999999999988877754
Q ss_pred --cCCEEEEEecCcchh
Q 040758 737 --AGITYISVGHRRTLY 751 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~ 751 (788)
.|..||..||..--.
T Consensus 177 ~~~GGiVllttHq~l~~ 193 (209)
T COG4133 177 AAQGGIVLLTTHQPLPI 193 (209)
T ss_pred hcCCCEEEEecCCccCC
Confidence 689999999985433
No 365
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=5.2e-29 Score=292.29 Aligned_cols=212 Identities=26% Similarity=0.354 Sum_probs=168.1
Q ss_pred CcEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEEeeccCcccccC
Q 040758 497 KLLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD---GRGKITFYVKDREETDAH 570 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p---~~G~I~~~~~~~~~i~~~ 570 (788)
-.++++|++...++. .+.+|+|||.+++|||.+||+||||||||||+++|+|..+. .+|+|++||. ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~--- 97 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PR--- 97 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cC---
Confidence 358999999988654 36799999999999999999999999999999999999975 6899999642 11
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
..+..++..|||+||..++. .||+|++.|...-. +..
T Consensus 98 --------------------~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lr-------------lp~--------- 135 (613)
T KOG0061|consen 98 --------------------DSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLR-------------LPS--------- 135 (613)
T ss_pred --------------------chhhhhheeEEEcccccccccccHHHHHHHHHHhc-------------CCC---------
Confidence 12345778999999999886 49999998732110 000
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccc-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
+...+..++.+.+.++++++....+.. .+ .....+|||||+|++||.-|++||+||+||||||+||+.+..
T Consensus 136 ---~~~~~~k~~~V~~vi~~LgL~~~~~t~-----ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~ 207 (613)
T KOG0061|consen 136 ---SLSKEEKRERVEEVISELGLEKCADTL-----IGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSAL 207 (613)
T ss_pred ---CCCHHHHHHHHHHHHHHcCChhhccce-----ecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHH
Confidence 000112235677888888887544332 12 222569999999999999999999999999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEccCC
Q 040758 729 HLYEQIEA---AGITYISVGHRRT--LYDFHKRVLRISTVD 764 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~ 764 (788)
.+.+.|++ .|+|||+.=|.++ +.+..|++++|.+|+
T Consensus 208 ~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 208 QVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGE 248 (613)
T ss_pred HHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCc
Confidence 99999875 6999999999975 567899999999985
No 366
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.96 E-value=9e-29 Score=238.55 Aligned_cols=214 Identities=23% Similarity=0.347 Sum_probs=151.4
Q ss_pred cEEEeeeEEEcCC-------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPT-------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~-------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
.++++|+++.|.. ....+++.+||++++|+++||+|.||||||||.|+|+|..+|++|+|++|| ..+.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~---~~L~~- 79 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND---HPLHF- 79 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECC---ccccc-
Confidence 3677788765532 123488999999999999999999999999999999999999999999953 33320
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. ......+.|-+++|||.-- -.-|-||. . +.++ | +..
T Consensus 80 -----------~--------Dy~~R~k~IRMiFQDpnts-~NPRl~iG--q-------iLd~-------P-------L~l 116 (267)
T COG4167 80 -----------G--------DYSFRSKRIRMIFQDPNTS-LNPRLRIG--Q-------ILDF-------P-------LRL 116 (267)
T ss_pred -----------c--------chHhhhhheeeeecCCccc-cChhhhhh--h-------Hhcc-------h-------hhh
Confidence 0 0111235699999999421 01122221 0 0000 0 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.-+.......+.+.+.|..+|+-. |...-++..||.|||||||+||||+-+|+|+|.|||..+||.....++
T Consensus 117 ~T~~~~~~R~~~i~~TL~~VGL~P--------dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl 188 (267)
T COG4167 117 NTDLEPEQRRKQIFETLRMVGLLP--------DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188 (267)
T ss_pred cccCChHHHHHHHHHHHHHhccCc--------cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHH
Confidence 000001112345677788777632 222334677999999999999999999999999999999999999888
Q ss_pred HHHHH----hcCCEEEEEecCcchhh-cCCEEEEEccCCCC
Q 040758 731 YEQIE----AAGITYISVGHRRTLYD-FHKRVLRISTVDQN 766 (788)
Q Consensus 731 ~~~L~----~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~~ 766 (788)
.+..- +.|...|.++..+..++ .+|+|+||+.|+..
T Consensus 189 ~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 189 INLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred HHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCcee
Confidence 77542 36999999999999886 59999999999753
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.96 E-value=2.3e-29 Score=240.46 Aligned_cols=136 Identities=37% Similarity=0.590 Sum_probs=107.0
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.+..+. +....
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~-----------------------~~~~~ 57 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI-----------------------DIEEL 57 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS-----------------------HHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc-----------------------ccccc
Confidence 7899999999999999999999999999999999999999999954432221 11234
Q ss_pred cceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 596 SRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
++.++|++|++.++.+ |++||. .++++.++++.+++..
T Consensus 58 ~~~i~~~~~~~~~~~~~tv~~~~-----------------------------------------~~~~~~~~l~~l~~~~ 96 (137)
T PF00005_consen 58 RRRIGYVPQDPQLFPGLTVRENE-----------------------------------------SDERIEEVLKKLGLED 96 (137)
T ss_dssp HHTEEEEESSHCHHTTSBHHHHH-----------------------------------------HHHHHHHHHHHTTHGG
T ss_pred ccccccccccccccccccccccc-----------------------------------------cccccccccccccccc
Confidence 5679999999999876 699981 0134555666665543
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS 720 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTS 720 (788)
.... ..+.....||||||||++|||||+++|+++|||||||
T Consensus 97 ~~~~-----~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 97 LLDR-----KIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GTGS-----BGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccc-----ccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2221 1244457899999999999999999999999999997
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1e-29 Score=242.60 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=145.0
Q ss_pred cEEEeeeEEEcC-----CCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTP-----TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~-----~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.+.++||+++|. +-.-++++|+||+++.||++++-||||+|||||+|+|.+-|.|++|+|++.-. |.-++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~-g~~vd---- 78 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHE-GEWVD---- 78 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeC-cchhh----
Confidence 377888877652 11237999999999999999999999999999999999999999999998421 11110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
... -..+. -++-.|+.||||+|---.... .+..+.-+++ +.
T Consensus 79 ---l~~---a~pr~----vl~vRr~TiGyVSQFLRviPR-------V~aLdVvaeP----------------------ll 119 (235)
T COG4778 79 ---LVT---AEPRE----VLEVRRTTIGYVSQFLRVIPR-------VSALDVVAEP----------------------LL 119 (235)
T ss_pred ---hhc---cChHH----HHHHHHhhhHHHHHHHHhccC-------cchHHHHHhH----------------------HH
Confidence 000 00000 111234569999995321111 0100000000 00
Q ss_pred cCCCCCC--hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPS--TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~--~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.++...+ .+.....|.++++...+ ..-.+.++|||||||+.|||.|+-|-|||+|||||++||..+.+.+
T Consensus 120 ~~gv~~~~a~~~a~~Ll~rLnlperL--------W~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vV 191 (235)
T COG4778 120 ARGVPREVARAKAADLLTRLNLPERL--------WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191 (235)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCHHH--------hcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHH
Confidence 1111111 12344556665553211 1223678999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 731 YEQIEA---AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
.+.+.+ .|..+|=|-||.+.- ..|||++.+..
T Consensus 192 veli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 192 VELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999864 699999999998875 46999998864
No 369
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.7e-29 Score=255.44 Aligned_cols=189 Identities=24% Similarity=0.282 Sum_probs=132.8
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
.++++|+||+|++|++++++|||||||||++|+|.|+..|++|.|.++|.+ .- + ..
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~---Pf--------------~-------~~ 92 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD---PF--------------R-------RR 92 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcC---cc--------------h-------hH
Confidence 358999999999999999999999999999999999999999999996432 21 0 00
Q ss_pred ccCcceEEEEc-cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH---
Q 040758 593 NRNSRGVFFLP-QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE--- 668 (788)
Q Consensus 593 ~~~r~~i~~v~-Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~--- 668 (788)
+..-+++++|+ |...+. +..+..+.-.+.++ +. ...++++.+.++
T Consensus 93 ~~~~~~~~~v~gqk~ql~---------Wdlp~~ds~~v~~~------------------Iy----~Ipd~~F~~r~~~l~ 141 (325)
T COG4586 93 EEYLRSIGLVMGQKLQLW---------WDLPALDSLEVLKL------------------IY----EIPDDEFAERLDFLT 141 (325)
T ss_pred HHHHHHHHHHhhhhheee---------eechhhhhHHHHHH------------------HH----hCCHHHHHHHHHHHH
Confidence 01113355543 322211 11110000001111 11 112233333332
Q ss_pred -hcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEE
Q 040758 669 -DVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYIS 743 (788)
Q Consensus 669 -~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~ 743 (788)
.++++.++ ..+...||-|||.|..||-||+++|++|+|||||=+||......|.+.|++ .+.||+.
T Consensus 142 eiLdl~~~l---------k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll 212 (325)
T COG4586 142 EILDLEGFL---------KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212 (325)
T ss_pred HHhcchhhh---------hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE
Confidence 22222221 234677999999999999999999999999999999999999999999874 5999999
Q ss_pred EecCc-chhhcCCEEEEEccCCC
Q 040758 744 VGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
.||.+ ++...||||+.|++|+.
T Consensus 213 TTH~~~di~~lc~rv~~I~~Gql 235 (325)
T COG4586 213 TTHIFDDIATLCDRVLLIDQGQL 235 (325)
T ss_pred EecchhhHHHhhhheEEeeCCcE
Confidence 99997 56789999999999975
No 370
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.5e-28 Score=249.59 Aligned_cols=183 Identities=24% Similarity=0.331 Sum_probs=139.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
..++|+||||++++||.+||||+||||||||+|+|+|.|+|++|+|.++|+- . +
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-~-------------------------~ 92 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-A-------------------------P 92 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-e-------------------------h
Confidence 3469999999999999999999999999999999999999999999985321 0 0
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
+ +--..|+-|| .|-||||.+-.. ..|+ ..+..++.+.+..+.+.
T Consensus 93 l--i~lg~Gf~pe------lTGreNi~l~~~------------~~G~----------------~~~ei~~~~~eIieFaE 136 (249)
T COG1134 93 L--IELGAGFDPE------LTGRENIYLRGL------------ILGL----------------TRKEIDEKVDEIIEFAE 136 (249)
T ss_pred h--hhcccCCCcc------cchHHHHHHHHH------------HhCc----------------cHHHHHHHHHHHHHHHH
Confidence 0 0112444332 478999965100 0000 00112234455566666
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCc
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRR 748 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~ 748 (788)
++++++. +..++|-|++-|+|+|-|.-.+|+|||+||..+.-|+.=.++-.+.+. ++++|+|+|||++
T Consensus 137 LG~fi~~---------PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 137 LGDFIDQ---------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHhhC---------chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 6655544 367899999999999999999999999999999999998887776664 3689999999999
Q ss_pred chh-hcCCEEEEEccCCC
Q 040758 749 TLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 749 ~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+ ++||++++|++|..
T Consensus 208 ~~I~~~Cd~~i~l~~G~i 225 (249)
T COG1134 208 GAIKQYCDRAIWLEHGQI 225 (249)
T ss_pred HHHHHhcCeeEEEeCCEE
Confidence 876 68999999999965
No 371
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=3.3e-28 Score=253.08 Aligned_cols=90 Identities=30% Similarity=0.376 Sum_probs=76.2
Q ss_pred HHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cC
Q 040758 664 IKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AG 738 (788)
Q Consensus 664 ~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g 738 (788)
.+.++.+++.+. .....+.+||||||||++|||||+.+| ++|||||||++||+.+...+.+.|++ .|
T Consensus 118 ~~~l~~~~l~~~--------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g 189 (226)
T cd03270 118 LGFLVDVGLGYL--------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG 189 (226)
T ss_pred HHHHHHCCCCcc--------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCC
Confidence 456777665421 123456789999999999999999998 59999999999999999999888754 58
Q ss_pred CEEEEEecCcchhhcCCEEEEEc
Q 040758 739 ITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|+|+|||+++.+.+||++++|+
T Consensus 190 ~tii~itH~~~~~~~~d~i~~l~ 212 (226)
T cd03270 190 NTVLVVEHDEDTIRAADHVIDIG 212 (226)
T ss_pred CEEEEEEeCHHHHHhCCEEEEeC
Confidence 99999999998888999999993
No 372
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.95 E-value=1.5e-24 Score=239.81 Aligned_cols=301 Identities=23% Similarity=0.372 Sum_probs=266.0
Q ss_pred cccccChhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 142 APYWFSDDKVQARLQL--AAVFALTFATTGISVGFNFLGRDFYNALAD-------KDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 142 ~p~~~~~~~~~~~~~l--~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-------~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
..+|.++++|..+..+ +++++++...+.+++.+..+.+.++|++.+ .|.+.|+..+..++.+.++.+++.+
T Consensus 77 ~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v 156 (409)
T PRK11098 77 FWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISV 156 (409)
T ss_pred hhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888877 567777788888999999999999999887 4878888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY 292 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~ 292 (788)
+..++...+..+||.|++++++.+|++.+ ..+||||||.+|+..+.+....+..+++..+++++.+..+|+
T Consensus 157 ~~~~~~~~l~irWR~wLT~~yl~~Wl~~r---------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW 227 (409)
T PRK11098 157 LNNFFVSHYVFRWRTAMNEYYMAHWQKLR---------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLV 227 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999988543 346899999999999999888899999999999999999999
Q ss_pred hhhhh-------------HHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHH
Q 040758 293 GIYPP-------------LFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQ 359 (788)
Q Consensus 293 ~~~~~-------------L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~ 359 (788)
.++.. |+++++++.+++.+++.++++++.+++.++++.|++++..++...+|.| +.|.+
T Consensus 228 ~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~ 299 (409)
T PRK11098 228 TLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPP 299 (409)
T ss_pred HhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHH
Confidence 98764 6778888899999999999999999999999999999999999999987 45667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 360 LLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAI 439 (788)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l 439 (788)
.+.++|++..+++.+.......+..+...+..+..+++.+++++.++.|.+|+|.+++...+|.++.+.+++++..+..+
T Consensus 300 ~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~l 379 (409)
T PRK11098 300 TVRELFSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTI 379 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999998888878888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhhcccc
Q 040758 440 SAFSAVIDRLGEFDDVLDSS 459 (788)
Q Consensus 440 ~~~~~~~~rl~~~~~i~~~~ 459 (788)
.+..+..+|+.++.+.++..
T Consensus 380 ael~A~~~RL~~F~~~l~~~ 399 (409)
T PRK11098 380 VELLSIYKRLRSFEAALDGE 399 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998776543
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.95 E-value=9e-28 Score=244.52 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=123.2
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCc
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS 596 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 596 (788)
+++++++++| +++|+||||||||||+++|+|+.+|..|...- +....++. ..+++.. . ...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~-~~~~~~~~----------~~~~~~~-----~-~~~~ 75 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLR-GEKMSDVI----------FAGSETR-----K-PANF 75 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhc-ccCHHHHh----------ccCCCCC-----C-CCce
Confidence 7899999999 99999999999999999999998777543221 11111110 0111110 1 1234
Q ss_pred ceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccc
Q 040758 597 RGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYIL 676 (788)
Q Consensus 597 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 676 (788)
+.|++|+|++..+ |+.. ..+++.++++. ..
T Consensus 76 ~~v~~vfq~~~~~---------~~~~------------------------------------~~~~~~~~l~~---~~-- 105 (197)
T cd03278 76 AEVTLTFDNSDGR---------YSII------------------------------------SQGDVSEIIEA---PG-- 105 (197)
T ss_pred EEEEEEEEcCCCc---------eeEE------------------------------------ehhhHHHHHhC---CC--
Confidence 6799999999765 2110 01223333332 10
Q ss_pred ccCCCccccccCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcch
Q 040758 677 PRLNSLDTTYEWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTL 750 (788)
Q Consensus 677 ~~~~g~~t~~e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~ 750 (788)
....+...||||||||++|||+++ .+|++++|||||++||+.....+.+.|++ .+.|+|+|||+++.
T Consensus 106 -------~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~ 178 (197)
T cd03278 106 -------KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGT 178 (197)
T ss_pred -------ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence 012345679999999999999986 56799999999999999999999998875 47999999999988
Q ss_pred hhcCCEEEEEcc
Q 040758 751 YDFHKRVLRIST 762 (788)
Q Consensus 751 ~~~~D~Ilvl~~ 762 (788)
+..||+++.|..
T Consensus 179 ~~~~d~v~~~~~ 190 (197)
T cd03278 179 MEAADRLYGVTM 190 (197)
T ss_pred HhhcceEEEEEe
Confidence 889999999975
No 374
>PRK12369 putative transporter; Reviewed
Probab=99.95 E-value=2.1e-24 Score=234.49 Aligned_cols=293 Identities=26% Similarity=0.433 Sum_probs=255.9
Q ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 150 KVQARLQLA--AVFALTFATTGISVGFNFLGRDFYNALADK-------DQEQFAKQLLYYLGAFAGGIPFFVLRDYARET 220 (788)
Q Consensus 150 ~~~~~~~l~--~~~~l~~~~~~l~~~~~~l~~~iid~l~~~-------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 220 (788)
+|.++..++ +++++.+..+.+++.+..+.+.++|++.++ +.+.|+..+..++++.++.+++.++..++...
T Consensus 10 ~~~~~~ll~~~~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~ 89 (326)
T PRK12369 10 KWALWAYGGLFFILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASH 89 (326)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666 567778888899999999999999999885 57788887777776666667777778889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 040758 221 LALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYP---- 296 (788)
Q Consensus 221 l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~---- 296 (788)
+..+||.|++++++++|+.. .+..|||||||++|+..+.+....+..+++..+++++.+.++|+.++.
T Consensus 90 l~i~WR~wLT~~~l~~wl~~--------~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~ 161 (326)
T PRK12369 90 YAFRWREAMTFSYLKFWRNK--------RDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSL 161 (326)
T ss_pred HHHHHHHHHHHHHHHHHhcC--------CCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 99999999999999999862 234699999999999999998888999999999999999999998763
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 297 --------PLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 297 --------~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
.+.++++++.+++.+++.++++++.+++.++++.|++++..++...+|.+. + .|.+.+.++|.+.
T Consensus 162 ~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v 234 (326)
T PRK12369 162 PFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGL 234 (326)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHH
Confidence 356666888889999999999999999999999999999999999998877 3 4556778999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDR 448 (788)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~r 448 (788)
.+++.+..........+...+..+..+++.+++++.++.|.+++|.+.+...+|.++.+.+++++..+..+++..+..+|
T Consensus 235 ~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~R 314 (326)
T PRK12369 235 RFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKR 314 (326)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhcc
Q 040758 449 LGEFDDVLD 457 (788)
Q Consensus 449 l~~~~~i~~ 457 (788)
+.++.+.++
T Consensus 315 L~~f~~~l~ 323 (326)
T PRK12369 315 LKEFEKNIE 323 (326)
T ss_pred HHHHHHHhh
Confidence 998876543
No 375
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.95 E-value=1.2e-24 Score=233.54 Aligned_cols=274 Identities=45% Similarity=0.717 Sum_probs=246.6
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
...++++|.+++++| ++.++..+..+++++++.++.+.+++.++.+.+.++|++..+|.+.|+..+..++++.+...++
T Consensus 4 ~~flr~f~~L~~~~~-~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l 82 (281)
T PF06472_consen 4 RQFLRRFWRLARIYW-PSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALL 82 (281)
T ss_pred hHHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999 6788888888888888888899999999999999999999999999988877777776666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI-IDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSN 289 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~-~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~ 289 (788)
.....|+...+..+||.|++.+++.+|+.+..||+++..+- .|||||||++|++.+.+....+..+++..+++++.+..
T Consensus 83 ~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~ 162 (281)
T PF06472_consen 83 NSILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSV 162 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999998766 89999999999999999888899999999999999999
Q ss_pred HHHhhhhhHHH-HHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 290 ILYGIYPPLFV-VLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 290 il~~~~~~L~l-~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
+++.+.+++.. +++++.++..+++.++++++.++..++++.|++++..+.+..+|.|.|+.+++|+.|.+++.++|.+.
T Consensus 163 ~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l 242 (281)
T PF06472_consen 163 ILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDAL 242 (281)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99998888776 77888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISSRNLEFFTSGY-RYLIQILPAAVVAPMY 405 (788)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 405 (788)
.++..+..........+...+ .++..+++.+++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~ 280 (281)
T PF06472_consen 243 IDNWRRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPY 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999888877777777888777 7777777777776554
No 376
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=3.3e-26 Score=240.39 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=69.2
Q ss_pred ccCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
.+.+..||||||||++|||||+ ++|+++||||||++||+.+.+.+.+.|++ .++|+|+++|+.+..+.||++++
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~ 232 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYG 232 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEE
Confidence 4557789999999999999996 46899999999999999999999998876 47899999999888899999999
Q ss_pred Ecc
Q 040758 760 IST 762 (788)
Q Consensus 760 l~~ 762 (788)
|+-
T Consensus 233 l~~ 235 (243)
T cd03272 233 VKF 235 (243)
T ss_pred EEE
Confidence 974
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.93 E-value=1.6e-25 Score=230.77 Aligned_cols=187 Identities=17% Similarity=0.139 Sum_probs=129.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEe-CCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVIN-EKEHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~-~Ge~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++|+. +|.+ + ++++|+.. +|++++|+||||||||||+++|++ +|.+..+....+ +..+.
T Consensus 5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~--~~~~~-------- 68 (213)
T cd03279 5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE--NLRSV-------- 68 (213)
T ss_pred EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch--hHHHH--------
Confidence 48899988 7642 2 66777654 589999999999999999999994 666665555431 00000
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
......+..|++++|++.. ...+..++.
T Consensus 69 --------------~~~~~~~~~v~~~f~~~~~----~~~~~r~~g---------------------------------- 96 (213)
T cd03279 69 --------------FAPGEDTAEVSFTFQLGGK----KYRVERSRG---------------------------------- 96 (213)
T ss_pred --------------hcCCCccEEEEEEEEECCe----EEEEEEecC----------------------------------
Confidence 0112334569999998721 111222211
Q ss_pred CCCChHHHHHH--HHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHcc----------CCCEEEEecCCCCC
Q 040758 656 SKPSTDDLIKA--LEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLS----------KPQIVLLDESTSAL 722 (788)
Q Consensus 656 ~~~~~~~~~~~--l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~----------~p~iLiLDEpTSaL 722 (788)
.+.+++.+. ++.. +++.. ...+.+||||||||++|||||+. +|+++||||||++|
T Consensus 97 --l~~~~~~~~~~l~~g----------~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~l 164 (213)
T cd03279 97 --LDYDQFTRIVLLPQG----------EFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTL 164 (213)
T ss_pred --CCHHHHHHhhhhhhc----------chHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccC
Confidence 111222221 1211 12222 44567899999999999999974 67899999999999
Q ss_pred CHHHHHHHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 723 DEANEAHLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 723 D~~se~~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
|+.+...+.+.|++ .++|+|+|||+++.+ ..||+++++++|.
T Consensus 165 D~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 165 DPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 99999999888764 489999999998765 5789999999874
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.92 E-value=2.1e-25 Score=235.65 Aligned_cols=190 Identities=16% Similarity=0.203 Sum_probs=130.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
..+++||||||||||||+++|+++..++ .|++...+. .++- . . . ......+..+++++|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~--~~li-----------~-~--~----~~~~~~~~~v~~~fq 84 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL--QDLI-----------Y-K--R----GQAGITKASVTIVFD 84 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH--HHHh-----------h-c--C----CCCCCcEEEEEEEEE
Confidence 5689999999999999999999999876 457776322 1110 0 0 0 000112347999999
Q ss_pred cccc---------C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 605 RPYM---------V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 605 ~~~l---------f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
++.. . .-||.+|+.++..... + + .......+++.+.|+.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~---------------~---------i--n~~~~~~~~v~~~L~~vgL~~ 138 (251)
T cd03273 85 NSDKSQSPIGFENYPEITVTRQIVLGGTNKY---------------L---------I--NGHRAQQQRVQDLFQSVQLNV 138 (251)
T ss_pred cCCcccCcccccCCceEEEEEEEEcCCceEE---------------E---------E--CCEEeeHHHHHHHHHHcCCCC
Confidence 8631 1 2366666655321100 0 0 001123466777788777641
Q ss_pred -----cccc------CCCccccccCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--c
Q 040758 675 -----ILPR------LNSLDTTYEWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--A 737 (788)
Q Consensus 675 -----~~~~------~~g~~t~~e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~ 737 (788)
++.+ .+..+.....+.+||||||||++|||||+ .+|++++|||||++||+.+...+.+.|++ +
T Consensus 139 ~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~ 218 (251)
T cd03273 139 NNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK 218 (251)
T ss_pred CCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC
Confidence 0000 00111223556789999999999999997 58899999999999999999999998875 6
Q ss_pred CCEEEEEecCcchhhcCCEEEEEc
Q 040758 738 GITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
|.|+|+|||+.+..+.||+++-+.
T Consensus 219 g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 219 GSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred CCEEEEEECCHHHHHhCCEEEEEE
Confidence 899999999999999999998875
No 379
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.92 E-value=2.1e-25 Score=272.41 Aligned_cols=209 Identities=23% Similarity=0.293 Sum_probs=164.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..+..+|+++.|+.... +++++|+.|++||+.|+.|+|||||||++|+|.|..+|++|++.++|.+...-
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~--------- 632 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVS--------- 632 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccc---------
Confidence 46899999999975333 99999999999999999999999999999999999999999999954432211
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.+....++++||+||+..++.. |.||.+.+- |+.-|+.+
T Consensus 633 -------------~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~------------arlrG~~~--------------- 672 (885)
T KOG0059|consen 633 -------------TDFQQVRKQLGYCPQFDALWEELTGREHLEFY------------ARLRGLPR--------------- 672 (885)
T ss_pred -------------cchhhhhhhcccCCchhhhhhhccHHHHHHHH------------HHHcCCCh---------------
Confidence 0112356789999999988865 999988541 11111100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
..-.+.+.+.++.+++.+..+. ....+|||+|.|+++|-|++.+|++++|||||+|+||.+++.+.+.+.
T Consensus 673 -~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~ 742 (885)
T KOG0059|consen 673 -SDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIA 742 (885)
T ss_pred -hHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 0011345677777777543332 356799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+.+|++||-++.. ..|||+..|.+|+.
T Consensus 743 ~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 743 RLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQL 776 (885)
T ss_pred HHHhcCCEEEEEcCCHHHHHHHhhhhheeecCee
Confidence 4 466999999998765 57999999999975
No 380
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=3e-25 Score=234.37 Aligned_cols=94 Identities=27% Similarity=0.390 Sum_probs=79.1
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK---PQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~---p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.+..+.|+.+++++. ..+....+||||||||++|||+|+++ |+++||||||++||+.....+.+.|++
T Consensus 147 ~~~~~~L~~vgL~~l--------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l 218 (261)
T cd03271 147 ARKLQTLCDVGLGYI--------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218 (261)
T ss_pred HHHHHHHHHcCCchh--------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 345567777766542 12345678999999999999999996 799999999999999999999888764
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.|.|+|+|+|+++.++.||++++|..
T Consensus 219 ~~~g~tvIiitH~~~~i~~aD~ii~Lgp 246 (261)
T cd03271 219 VDKGNTVVVIEHNLDVIKCADWIIDLGP 246 (261)
T ss_pred HhCCCEEEEEeCCHHHHHhCCEEEEecC
Confidence 58999999999998889999999953
No 381
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=2.6e-25 Score=245.04 Aligned_cols=195 Identities=21% Similarity=0.273 Sum_probs=148.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..+.++||+|.|++ +..+++++||-|..++.+|+|||||||||||+|+++|...|..|.|.-.
T Consensus 388 pvi~~~nv~F~y~~-~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~---------------- 450 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD-NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH---------------- 450 (614)
T ss_pred CeEEEeccccCCCC-cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc----------------
Confidence 46999999999975 3378899999999999999999999999999999999999999999741
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
....+++-.|.. .|.+.|..+. .+++. ....
T Consensus 451 ------------------~H~~~~~y~Qh~-------~e~ldl~~s~---------------le~~~---------~~~~ 481 (614)
T KOG0927|consen 451 ------------------SHNKLPRYNQHL-------AEQLDLDKSS---------------LEFMM---------PKFP 481 (614)
T ss_pred ------------------ccccchhhhhhh-------HhhcCcchhH---------------HHHHH---------Hhcc
Confidence 011244334432 1222221110 00110 0011
Q ss_pred -CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 -KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 -~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++...|...|+.... ..-...+||+|||.||.+||++++.|.+|+|||||++||.++...+-++|.
T Consensus 482 ~~~~~e~~r~ilgrfgLtgd~--------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN 553 (614)
T KOG0927|consen 482 DEKELEEMRSILGRFGLTGDA--------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN 553 (614)
T ss_pred ccchHHHHHHHHHHhCCCccc--------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh
Confidence 12346777888888775211 123356799999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 AAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+...++|++||+.-++ ..+++|++.++|..
T Consensus 554 e~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 554 EFPGGVVLVSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred ccCCceeeeechhhHHHHHHHHhHhhccCce
Confidence 9888999999998776 57899998888754
No 382
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.92 E-value=2.6e-24 Score=220.39 Aligned_cols=163 Identities=23% Similarity=0.242 Sum_probs=121.7
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHh----cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccccc
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMA----GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR 594 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~----gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (788)
.++++.+| +++|+||||||||||+++|. |...|++|.+.. +...+ ....
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~---~~~~i-----------------------~~~~ 68 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAH---DPKLI-----------------------REGE 68 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccc---hHHHH-----------------------hCCC
Confidence 34567777 99999999999999999994 998888887752 11111 1112
Q ss_pred CcceEEEEcccc-----ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH
Q 040758 595 NSRGVFFLPQRP-----YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668 (788)
Q Consensus 595 ~r~~i~~v~Q~~-----~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (788)
.+..+++++|++ .+.. -|+.+|+.++.. +++.+.+
T Consensus 69 ~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~--------------------------------------~~~~~~~- 109 (204)
T cd03240 69 VRAQVKLAFENANGKKYTITRSLAILENVIFCHQ--------------------------------------GESNWPL- 109 (204)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEhhHhhceeeech--------------------------------------HHHHHHH-
Confidence 345699999998 2222 277777755310 1111111
Q ss_pred hcccccccccCCCccccccCCCCCChhHHHH------HHHHHHHccCCCEEEEecCCCCCCHHHHH-HHHHHHHh---c-
Q 040758 669 DVKLGYILPRLNSLDTTYEWSSVLSLGEQQR------LAFARLLLSKPQIVLLDESTSALDEANEA-HLYEQIEA---A- 737 (788)
Q Consensus 669 ~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQR------iaIARALl~~p~iLiLDEpTSaLD~~se~-~i~~~L~~---~- 737 (788)
.+.+..||+||+|| ++||||++.+|++++|||||++||+.+.. .+.+.+++ .
T Consensus 110 -----------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~ 172 (204)
T cd03240 110 -----------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172 (204)
T ss_pred -----------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc
Confidence 12345699999996 79999999999999999999999999999 88888754 3
Q ss_pred CCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 738 GITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++|+|+|||+++....||++++|++.+
T Consensus 173 ~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 173 NFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred CCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 789999999998888899999997653
No 383
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.91 E-value=4e-25 Score=227.61 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=124.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|... +| .+..
T Consensus 5 ~l~l~nfk-~~~--~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G---~~~~--------- 54 (212)
T cd03274 5 KLVLENFK-SYA--GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FG---FRAS--------- 54 (212)
T ss_pred EEEEECcc-cCC--CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hc---cCHH---------
Confidence 37777775 674 4568999988 89999999999999999999722 11 1110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. ..++++++++|+..+++. |.++++.+-...... +.+. ..++.....
T Consensus 55 -------------~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~----~~g~~~~~~ 102 (212)
T cd03274 55 -------------K--MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDK-------------PLLK----SKGIDLDHN 102 (212)
T ss_pred -------------H--hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCH-------------HHHH----HCCcCCCCC
Confidence 0 012457888888766543 555554432110000 0000 000000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.. .-...++++.+++. ++. ......||+|||||++||||++. +|++++|||||++||+.+...+.+
T Consensus 103 ~~-~v~~~~~~~~~~L~------~~~---~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~ 172 (212)
T cd03274 103 RF-LILQGEVEQIAQMP------KKS---WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVAN 172 (212)
T ss_pred ce-EEcCCcEEEeeccc------ccc---ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 00 00001111222221 111 22356799999999999999963 589999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 733 QIEA--AGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
.+++ .+.|+|++||+.+..+.||++++|..-
T Consensus 173 ~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~~ 205 (212)
T cd03274 173 YIKERTKNAQFIVISLRNNMFELADRLVGIYKT 205 (212)
T ss_pred HHHHHcCCCEEEEEECcHHHHHhCCEEEEEEec
Confidence 9876 578999999999889999999999763
No 384
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.91 E-value=6.9e-24 Score=237.65 Aligned_cols=225 Identities=20% Similarity=0.298 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++.. ..++|+||++++||+++|.|--|||+|-|+++|.|..++.+|+|.+|| +.+..+
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G---~~v~~~------- 326 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG---KPVRIR------- 326 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECC---EEccCC-------
Confidence 5788888742 258999999999999999999999999999999999999999999954 433210
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.+.+..+..|+|||.|- -+| ..+|++|+.++..... .... ++..
T Consensus 327 ------------sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~----------~~~~-~i~~--------- 374 (500)
T COG1129 327 ------------SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF----------SRRG-LIDR--------- 374 (500)
T ss_pred ------------CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh----------cccc-ccCh---------
Confidence 12234567899999865 345 5699999987622110 0000 1100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
....+...+..+.+++.. ........+||||-||++.|||.|..+|++|||||||.++|.-+..+|++.
T Consensus 375 ---~~e~~~~~~~~~~l~Ik~--------~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~l 443 (500)
T COG1129 375 ---RKERALAERYIRRLRIKT--------PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443 (500)
T ss_pred ---HHHHHHHHHHHHhcCccc--------CCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHH
Confidence 011122333444433321 011244678999999999999999999999999999999999999999998
Q ss_pred HHh---cCCEEEEEecCc-chhhcCCEEEEEccCCCCCCCCCeEEEecCcccccc
Q 040758 734 IEA---AGITYISVGHRR-TLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYN 784 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~~~~~~~~~~~~~~~~~~ 784 (788)
+++ +|+++|+||-.+ +++..||||+||.+|+...+..+= .++++.++.
T Consensus 444 i~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~---~~tee~im~ 495 (500)
T COG1129 444 IRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE---EATEEAIMA 495 (500)
T ss_pred HHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc---cCCHHHHHH
Confidence 875 799999999996 677899999999999765433221 155555544
No 385
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.90 E-value=2.4e-23 Score=229.57 Aligned_cols=215 Identities=23% Similarity=0.289 Sum_probs=138.1
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...+.++|+++.|+ +..+++|..|++.+|+++||+|+|||||||++++|.|-..|..-++-+
T Consensus 73 s~dvk~~sls~s~~--g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~---------------- 134 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH--GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF---------------- 134 (614)
T ss_pred cccceeeeeeeccC--CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----------------
Confidence 34699999999997 568999999999999999999999999999999999988886544432
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccc------cchhhHHHHhcCCccchhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEE------VKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~------~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
..+.++..--..+..+-+........ .++...+++......+.. -++
T Consensus 135 ------------------------y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~---~~~ 187 (614)
T KOG0927|consen 135 ------------------------YLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDE---LYE 187 (614)
T ss_pred ------------------------hhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHH---HHH
Confidence 11111110000111111111100000 000000000000000000 011
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccc--cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT--TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t--~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
...+.....-+.++.++|..+ |+.. ...+...||||||.|+|+||||+.+|++|+|||||++||.++.
T Consensus 188 r~~~~d~~~~~~k~~~il~gl----------gf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~ 257 (614)
T KOG0927|consen 188 RLDEMDNDTFEAKAAKILHGL----------GFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAI 257 (614)
T ss_pred HHHhhCchhHHHHHHHHHHhc----------CCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHH
Confidence 111111111112233333322 2222 2456778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-EEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEAAGI-TYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~~g~-TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|.+..+ |+++++|.-+++ ..|.+|+.+++++.
T Consensus 258 ~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 258 VWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred HHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccce
Confidence 999999998777 899999998876 57999999998864
No 386
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.89 E-value=2.8e-24 Score=206.33 Aligned_cols=198 Identities=26% Similarity=0.298 Sum_probs=143.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+... -|-.+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.+.+..
T Consensus 3 l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~---------- 65 (248)
T COG4138 3 LMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAW---------- 65 (248)
T ss_pred eeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHH----------
Confidence 46777877542 378899999999999999999999999999999986 5689999965543322
Q ss_pred hhcccccccchhcccccCcceEEEEcccc-ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+...+.++-+|+.|.. ..|..-|..-+....+..
T Consensus 66 -------------~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~-------------------------------- 100 (248)
T COG4138 66 -------------SATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDK-------------------------------- 100 (248)
T ss_pred -------------hHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchH--------------------------------
Confidence 1112334446665543 345445555444432211
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS-------KPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~-------~p~iLiLDEpTSaLD~~se~~ 729 (788)
.-..++.++...+++++.+ +...+.|||||+|||-+|-.+++ ..++|+||||.++||...+..
T Consensus 101 -~~a~~i~~i~~~L~l~DKL---------~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a 170 (248)
T COG4138 101 -TRTELLNDVAGALALDDKL---------GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA 170 (248)
T ss_pred -HHHHHHHHHHhhhcccchh---------hhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH
Confidence 1113344555555555433 33457799999999999988886 347999999999999999987
Q ss_pred HHHHHH---hcCCEEEEEecCc-chhhcCCEEEEEccCCCCC
Q 040758 730 LYEQIE---AAGITYISVGHRR-TLYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 730 i~~~L~---~~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~ 767 (788)
+.+.|. +.|.|||+.+||+ .+++.||+++.+..|+..-
T Consensus 171 Ldrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 171 LDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred HHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence 776654 5899999999997 5889999999999997643
No 387
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.88 E-value=1.1e-23 Score=252.34 Aligned_cols=211 Identities=22% Similarity=0.226 Sum_probs=159.2
Q ss_pred cEEEeeeEEEc--CCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKT--PTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--DGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y--~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
....+|+.+.- .++.+.+|+||+=-++||..+||+|+||||||||+++|+|--. ..+|+|+++|.. .
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p---~------ 857 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFP---K------ 857 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCee---C------
Confidence 45556666543 3345679999999999999999999999999999999999653 236888885432 1
Q ss_pred cchhhhcccccccchhcccccCcceEEEEcccc-ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
+.+..+|.+|||.|+. ++..-||||-+.|...-.-. ..+
T Consensus 858 -----------------~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp-------------~~v---------- 897 (1391)
T KOG0065|consen 858 -----------------DQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLP-------------KEV---------- 897 (1391)
T ss_pred -----------------chhhhccccceeecccccCcccchHHHHHHHHHHcCC-------------CcC----------
Confidence 1124567799998865 45567999999884321100 000
Q ss_pred cCCCCCCh-HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC-CEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPST-DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP-QIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~~-~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p-~iLiLDEpTSaLD~~se~~i 730 (788)
...+. +-++++++.++++...+.+ +|..|..||..||+|+.||=-|+.|| .||+|||||||||+.+...|
T Consensus 898 ---~~~ek~~yVe~Vi~lleL~~~~dai-----VG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i 969 (1391)
T KOG0065|consen 898 ---SDEEKYEYVEEVIELLELKEYADAL-----VGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIV 969 (1391)
T ss_pred ---CHHHHHHHHHHHHHHhCchhhhhhh-----ccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHH
Confidence 00111 3356677777776544322 36667889999999999999999999 99999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
.+.+++ .|+||+..=|.++ +.+..|+++.|++|++
T Consensus 970 ~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq 1009 (1391)
T KOG0065|consen 970 MRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ 1009 (1391)
T ss_pred HHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe
Confidence 999876 6999999999986 4677899999999864
No 388
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5e-23 Score=225.95 Aligned_cols=193 Identities=24% Similarity=0.367 Sum_probs=130.5
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|..++.+.+|+ ++.+|++-++++..|.++||||+||+|||||+|+|+. |.|... ..
T Consensus 78 ~~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-----~v-------- 136 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-----HV-------- 136 (582)
T ss_pred ccceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-----Cc--------
Confidence 44799999999995 5789999999999999999999999999999999998 555321 00
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.++.++.... .-|+ .+-.+|-+..+.... + .+.
T Consensus 137 -----eqE~~g~~t~-----------~~~~-~l~~D~~~~dfl~~e------------------------~---~l~--- 169 (582)
T KOG0062|consen 137 -----EQEVRGDDTE-----------ALQS-VLESDTERLDFLAEE------------------------K---ELL--- 169 (582)
T ss_pred -----hhheeccchH-----------HHhh-hhhccHHHHHHHHhh------------------------h---hhh---
Confidence 0000000000 0010 011111111111100 0 000
Q ss_pred CCCChHHHHH-HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 656 SKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 656 ~~~~~~~~~~-~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..-+.+++.. +|..+|....+ .......||||-|-|+|+||||+.+|+||+|||||+.||..+..++.+.|
T Consensus 170 ~~~~l~ei~~~~L~glGFt~em--------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL 241 (582)
T KOG0062|consen 170 AGLTLEEIYDKILAGLGFTPEM--------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYL 241 (582)
T ss_pred ccchHHHHHHHHHHhCCCCHHH--------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHH
Confidence 0002244444 55554432211 12345679999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 735 EAAGITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
.....|+|+|||+..++. .|.-|+.+++-+
T Consensus 242 ~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 242 QTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 998899999999988764 577787777543
No 389
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=2.2e-22 Score=212.14 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCCCChhHHHHHHHHHHHccC----CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 689 SSVLSLGEQQRLAFARLLLSK----PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~----p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
..+||||||||++||||++.+ |+++||||||++||+.+...+.+.+.+ .|.|+|+|||+.++.+.||++++|.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 378999999999999999864 899999999999999999999988865 4899999999999999999999998
Q ss_pred cCC
Q 040758 762 TVD 764 (788)
Q Consensus 762 ~g~ 764 (788)
+-.
T Consensus 233 ~~~ 235 (247)
T cd03275 233 RDQ 235 (247)
T ss_pred ecC
Confidence 643
No 390
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=5.3e-22 Score=212.46 Aligned_cols=191 Identities=24% Similarity=0.305 Sum_probs=142.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.+-+.||+|.||+ .++++++++|-|.=-.++|||||||.|||||++||.|-++|+.|+.+-+
T Consensus 585 PvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---------------- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---------------- 647 (807)
T ss_pred CeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------------
Confidence 46889999999985 7789999999999999999999999999999999999999999988631
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|-+||+.-|.. .|.+....... +++.. .-
T Consensus 648 ------------------hrL~iG~FdQh~-------~E~L~~Eetp~---------------EyLqr----------~F 677 (807)
T KOG0066|consen 648 ------------------HRLRIGWFDQHA-------NEALNGEETPV---------------EYLQR----------KF 677 (807)
T ss_pred ------------------ceeeeechhhhh-------HHhhccccCHH---------------HHHHH----------hc
Confidence 133489877764 23332211100 01100 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.-...+....|-.+|+.... .| -....||||||-||++|-.-+..|++|||||||++||.++-..+-+++.+
T Consensus 678 Nlpyq~ARK~LG~fGL~sHA------HT--ikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGLASHA------HT--IKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred CCChHHHHHHhhhhhhhhcc------ce--EeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 11234555556555553211 11 12346999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCcchhh--cCCEEEEEccC
Q 040758 737 AGITYISVGHRRTLYD--FHKRVLRISTV 763 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~--~~D~Ilvl~~g 763 (788)
.+..||+|||+..++. .| ..+|+++-
T Consensus 750 y~GgVi~VsHDeRLi~eT~C-~LwVvE~Q 777 (807)
T KOG0066|consen 750 YNGGVIMVSHDERLIVETDC-NLWVVENQ 777 (807)
T ss_pred ccCcEEEEecccceeeecCc-eEEEEccC
Confidence 8889999999977654 35 56677654
No 391
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=1.3e-21 Score=246.10 Aligned_cols=89 Identities=31% Similarity=0.375 Sum_probs=75.7
Q ss_pred HHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc---cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cC
Q 040758 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL---SKPQIVLLDESTSALDEANEAHLYEQIEA---AG 738 (788)
Q Consensus 665 ~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl---~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g 738 (788)
+.|+.+++.+. ..+....+||||||||++|||||+ ++|+++||||||++||+.+.+.+.+.|++ .|
T Consensus 791 ~~L~~vGL~~l--------~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G 862 (1809)
T PRK00635 791 HALCSLGLDYL--------PLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862 (1809)
T ss_pred HHHHHcCCcch--------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 45666665543 123446789999999999999998 69999999999999999999999988764 69
Q ss_pred CEEEEEecCcchhhcCCEEEEEc
Q 040758 739 ITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|+|+|+|+++.++.||++++|.
T Consensus 863 ~TVIiIsHdl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 863 HTVVIIEHNMHVVKVADYVLELG 885 (1809)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEc
Confidence 99999999998889999999996
No 392
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.86 E-value=3.5e-21 Score=233.30 Aligned_cols=91 Identities=27% Similarity=0.398 Sum_probs=77.0
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
..+.|+.+++++. ..+....+||||||||++|||+|+++| +++||||||++||+.+...+.+.|++
T Consensus 810 ~l~~L~~vgL~~l--------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~ 881 (943)
T PRK00349 810 KLQTLVDVGLGYI--------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD 881 (943)
T ss_pred HHHHHHHCCCCcc--------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3455666655432 224456789999999999999999999 99999999999999999999888764
Q ss_pred cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|+|+|+|+++.++.||+|++|.
T Consensus 882 ~G~TVIiitH~~~~i~~aD~ii~Lg 906 (943)
T PRK00349 882 KGNTVVVIEHNLDVIKTADWIIDLG 906 (943)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEec
Confidence 5899999999999888999999995
No 393
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=2.9e-21 Score=212.13 Aligned_cols=198 Identities=20% Similarity=0.277 Sum_probs=157.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.+++.+|+|.|+.++-+.+.++++.++.-.++++||+||+||||++|++.+-..|.+|-+.+.
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~---------------- 424 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH---------------- 424 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec----------------
Confidence 4699999999997643368899999999999999999999999999999999999999988651
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|.+|+|-.|...=+ .. +..+..++++. ...
T Consensus 425 ------------------~r~ri~~f~Qhhvd~---l~-------------------~~v~~vd~~~~---------~~p 455 (582)
T KOG0062|consen 425 ------------------PRLRIKYFAQHHVDF---LD-------------------KNVNAVDFMEK---------SFP 455 (582)
T ss_pred ------------------ccceecchhHhhhhH---HH-------------------HHhHHHHHHHH---------hCC
Confidence 245699988865322 00 00111111111 112
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++++.+.|..+|++..+.. .....||||||-||++|-....+|.+|+|||||+.||.++-..+-++|+.
T Consensus 456 G~~~ee~r~hl~~~Gl~g~la~--------~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~ 527 (582)
T KOG0062|consen 456 GKTEEEIRRHLGSFGLSGELAL--------QSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN 527 (582)
T ss_pred CCCHHHHHHHHHhcCCCchhhh--------ccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHh
Confidence 2367899999999988632221 11356999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCcchhh-cCCEEEEEccCCCCC
Q 040758 737 AGITYISVGHRRTLYD-FHKRVLRISTVDQNS 767 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~~~ 767 (788)
-+..||+|||+.++++ .|+.+++.++|+...
T Consensus 528 F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 528 FNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 8889999999999875 699999999997543
No 394
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.86 E-value=5.5e-21 Score=194.86 Aligned_cols=82 Identities=17% Similarity=0.063 Sum_probs=71.3
Q ss_pred cCCCCCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c--C-CEEEEEecCcchhhcCCE
Q 040758 687 EWSSVLSLGEQQRLAFARLL----LSKPQIVLLDESTSALDEANEAHLYEQIEA---A--G-ITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARAL----l~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~--g-~TvI~IaHr~~~~~~~D~ 756 (788)
....+||+|||||++||||+ +.+|+++||||||++||+.+...+.+.|.+ . + .|+|+++|+++.+..+|+
T Consensus 105 ~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~ 184 (198)
T cd03276 105 RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDD 184 (198)
T ss_pred CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccc
Confidence 44667999999999999999 699999999999999999999999887754 1 3 589999999988777799
Q ss_pred EEEEccCCCCCC
Q 040758 757 VLRISTVDQNSS 768 (788)
Q Consensus 757 Ilvl~~g~~~~~ 768 (788)
|-+|..+++.++
T Consensus 185 v~~~~~~~~~~~ 196 (198)
T cd03276 185 VKVFRMKDPRGP 196 (198)
T ss_pred eeEEEecCCCCC
Confidence 999999877654
No 395
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=1.6e-20 Score=227.31 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=70.5
Q ss_pred cccCCCCCChhHHHHHHHHHHHcc---CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEE
Q 040758 685 TYEWSSVLSLGEQQRLAFARLLLS---KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 685 ~~e~g~~LSGGQrQRiaIARALl~---~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Il 758 (788)
.+....+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|++ .|.|+|+|+|+++.++.||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 356678899999999999999997 5999999999999999999999988864 5899999999999888999999
Q ss_pred EEc
Q 040758 759 RIS 761 (788)
Q Consensus 759 vl~ 761 (788)
+|.
T Consensus 902 ~Lg 904 (924)
T TIGR00630 902 DLG 904 (924)
T ss_pred Eec
Confidence 995
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=203.31 Aligned_cols=183 Identities=24% Similarity=0.273 Sum_probs=127.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++..++++.|++ ..|.-=.=+|..||+++++||||-||||++++|+|...|++|. .. +
T Consensus 342 lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~------~----------- 400 (591)
T COG1245 342 LVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EE------D----------- 400 (591)
T ss_pred eeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cc------c-----------
Confidence 3455555555531 1232223345677899999999999999999999999999997 21 1
Q ss_pred hhcccccccchhcccccCcceEEEEccccc-cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
-.++|=||-.. -|++||++-+.-.... .+.
T Consensus 401 -------------------~~vSyKPQyI~~~~~gtV~~~l~~~~~~-------------~~~----------------- 431 (591)
T COG1245 401 -------------------LKVSYKPQYISPDYDGTVEDLLRSAIRS-------------AFG----------------- 431 (591)
T ss_pred -------------------ceEeecceeecCCCCCcHHHHHHHhhhh-------------hcc-----------------
Confidence 12778888431 2677887765421110 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
+..--.+.++-+++++++++ +..+|||||.||||||-||.+++++.+||||++.||.+..-.+-+.+++
T Consensus 432 --~s~~~~ei~~pl~l~~i~e~---------~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 432 --SSYFKTEIVKPLNLEDLLER---------PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred --cchhHHhhcCccchHHHHhc---------ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 00011123333444444333 3556999999999999999999999999999999999988776666653
Q ss_pred ----cCCEEEEEecCcchhhc-CCEEEEEc
Q 040758 737 ----AGITYISVGHRRTLYDF-HKRVLRIS 761 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~~-~D~Ilvl~ 761 (788)
.++|.++|-|++-.+.+ +||++|.+
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 68999999999988875 89999997
No 397
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.82 E-value=1.3e-19 Score=199.65 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=161.9
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC-cccccCCCcc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR-EETDAHTSDV 574 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~-~~i~~~~~~~ 574 (788)
...++++|++..-+. +-+.++|+||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.|. ...+
T Consensus 255 ~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~------ 327 (501)
T COG3845 255 EVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS------ 327 (501)
T ss_pred CeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC------
Confidence 346999999987643 45689999999999999999999999999999999999999999999976553 1111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccc----cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY----MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~----lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....+..++|||.|.. ..+.|+.||+.++..... ||....
T Consensus 328 ----------------~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~--------------~~~~~g----- 372 (501)
T COG3845 328 ----------------PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK--------------PFSRGG----- 372 (501)
T ss_pred ----------------HHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc--------------cccccc-----
Confidence 11233567999999873 345699999987644311 111100
Q ss_pred hccCCCCCChH----HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 651 VGRKSSKPSTD----DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 651 ~~~~~~~~~~~----~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
--+.. ...+..+++.+.. .........||||.+||+-+||-|.++|++||..+||-+||..+
T Consensus 373 ------~l~~~~i~~~a~~li~~fdVr~--------~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA 438 (501)
T COG3845 373 ------FLDRRAIRKFARELIEEFDVRA--------PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438 (501)
T ss_pred ------ccCHHHHHHHHHHHHHHcCccC--------CCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHH
Confidence 00111 1223333332210 01123456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---cCCEEEEEecCcc-hhhcCCEEEEEccCCCCC
Q 040758 727 EAHLYEQIEA---AGITYISVGHRRT-LYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 727 e~~i~~~L~~---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~~~ 767 (788)
.+.|.+.|.+ .|+.|++||-+++ +...||||.||.+|+..+
T Consensus 439 ~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 439 IEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred HHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 9999988753 7999999999985 568999999999998644
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=1.9e-20 Score=184.65 Aligned_cols=218 Identities=21% Similarity=0.297 Sum_probs=148.4
Q ss_pred EEEeeeEEEc--CCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEEeeccCcccccCCC
Q 040758 499 LDIEDLTLKT--PTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 499 I~~~nvsf~y--~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+.++|++..+ +.+.-.+++++|+++..||+-++||+||||||-+.|.|+|..+ .+.-+..+++.|.-.+.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~---- 79 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS---- 79 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC----
Confidence 4556666544 3334468999999999999999999999999999999999754 34445555322221111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhh-hhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTS-AQKL 648 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~-~~~~ 648 (788)
++. ..+-.-+.|++++|+|.--- .+|--++.-. .|+-+- ...+
T Consensus 80 ------Pr~---------RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~------------------IP~wTfkgrWW 126 (330)
T COG4170 80 ------PRE---------RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN------------------IPAWTYKGRWW 126 (330)
T ss_pred ------hHH---------hhhhhccchhhhhcCchhhcChHHHHHHHHHhh------------------CccccccchHh
Confidence 100 00112356899999995321 1222222100 011000 0001
Q ss_pred hhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 649 ENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
+..+. ...+.++.|.++|+.+..+ -...++.+|--||-|+|.||-|+..+|++||.||||+++|+.+..
T Consensus 127 q~F~W-----rKrrAIeLLHrVGIKdHkD------IM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~ 195 (330)
T COG4170 127 QRFGW-----RKRRAIELLHRVGIKDHKD------IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195 (330)
T ss_pred hhhch-----hHHHHHHHHHHhccccHHH------HHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHH
Confidence 11111 2346788899998865432 223456679999999999999999999999999999999999999
Q ss_pred HHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 729 HLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 729 ~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+|++.|.+ .|.|+++|+|++..+ +.||+|-||-=|.
T Consensus 196 QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 196 QIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ 236 (330)
T ss_pred HHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence 99998864 589999999998655 6899999997764
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=2.8e-20 Score=190.03 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=65.8
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH-HH---HhcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE-QI---EAAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~-~L---~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.+++|+|+||+..|++++ .+|+++++||||++||+.....+.. .+ .+.|.|+|++||+.++.+.||++++|++|.
T Consensus 89 ~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 89 LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENAS 167 (200)
T ss_pred cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEE
Confidence 356999999999999885 8999999999999999999887743 33 346899999999988888999999999886
Q ss_pred C
Q 040758 765 Q 765 (788)
Q Consensus 765 ~ 765 (788)
.
T Consensus 168 l 168 (200)
T cd03280 168 M 168 (200)
T ss_pred E
Confidence 5
No 400
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=1.4e-18 Score=171.12 Aligned_cols=213 Identities=21% Similarity=0.280 Sum_probs=141.0
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|++.++.|+|+. ..|++-|+|++++.|....+||.||||||||+|+|+|-.-...|.|.+.|.+ .- ++.
T Consensus 11 ~~aievsgl~f~y~~-~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrs---aF-hDt--- 82 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV-SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS---AF-HDT--- 82 (291)
T ss_pred cceEEEeccEEeccc-CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcC---cc-ccc---
Confidence 346999999999986 4589999999999999999999999999999999999988888999985433 10 000
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
++. ......|+.-+=. .+..+.. +...+ -.+...+-.-+++...
T Consensus 83 ---------------~l~-~Sgdl~YLGgeW~-------~~~~~ag-evplq------------~D~sae~mifgV~g~d 126 (291)
T KOG2355|consen 83 ---------------SLE-SSGDLSYLGGEWS-------KTVGIAG-EVPLQ------------GDISAEHMIFGVGGDD 126 (291)
T ss_pred ---------------ccc-ccCceeEeccccc-------ccccccc-ccccc------------ccccHHHHHhhccCCC
Confidence 000 0111333322110 0000000 00000 0000000000111100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
. ...+.++..|+ ++ ..-+-..+|-|||.||.||..|++.=++|+|||-|--||.-....+.+.++
T Consensus 127 p-~Rre~LI~iLD---Id-----------l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlk 191 (291)
T KOG2355|consen 127 P-ERREKLIDILD---ID-----------LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLK 191 (291)
T ss_pred h-hHhhhhhhhee---cc-----------ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHH
Confidence 0 11123333332 11 011245699999999999999999999999999999999999999999997
Q ss_pred h----cCCEEEEEecCc-chhhcCCEEEEEccCCCCC
Q 040758 736 A----AGITYISVGHRR-TLYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 736 ~----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~ 767 (788)
+ .|.|++..||-- .+...+.+++.|.+|+...
T Consensus 192 eEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 192 EECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 4 599999999985 4667899999999997643
No 401
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.78 E-value=1.5e-18 Score=173.88 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 692 LSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 692 LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
||||||||++|||+++ .+|+++++||||++||+.....+.+.|.+ .|+|+|+|||+.+....+|+++.+++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999995 79999999999999999999999888864 47999999999988889999999986
No 402
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=3.3e-18 Score=183.37 Aligned_cols=89 Identities=10% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCCChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 689 SSVLSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
...|||||+||+++||+++. +|++++|||||++||+.+...+.+.+++ .+.|+|+|||++++...||+++.|++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEE
Confidence 34699999999999997653 9999999999999999999999999875 57899999999988899999999998
Q ss_pred CCCCCCCCCeEEEecCccc
Q 040758 763 VDQNSSQSNWKLEFIDQES 781 (788)
Q Consensus 763 g~~~~~~~~~~~~~~~~~~ 781 (788)
+ +.++|....+++.+
T Consensus 248 ~----~~~~~~~~~~~~~~ 262 (276)
T cd03241 248 E----VEGGRTVTKVRELD 262 (276)
T ss_pred e----cCCCeEEEEhhhcC
Confidence 5 55779888887754
No 403
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.77 E-value=5.8e-18 Score=174.53 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=64.8
Q ss_pred ccCCCCCChhHHHHHHHHHH----HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-C-CEEEEEecCc-chhhcCC
Q 040758 686 YEWSSVLSLGEQQRLAFARL----LLSKPQIVLLDESTSALDEANEAHLYEQIEA---A-G-ITYISVGHRR-TLYDFHK 755 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARA----Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~-g-~TvI~IaHr~-~~~~~~D 755 (788)
...+.+||||||||+.+|++ ++.+|+++|+||||++||+.+...+.+.+.+ . | .|+|+|||++ ....+||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 34567899999999887755 4589999999999999999999999988854 3 4 5799999996 4555665
Q ss_pred --EEEEEccCC
Q 040758 756 --RVLRISTVD 764 (788)
Q Consensus 756 --~Ilvl~~g~ 764 (788)
+|++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 889999885
No 404
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.76 E-value=3.4e-18 Score=183.31 Aligned_cols=177 Identities=26% Similarity=0.381 Sum_probs=129.4
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--------CCCCCceEEEeeccCcccccCCCccchhhhccccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--------WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNM 584 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--------~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~ 584 (788)
..+++|+||+|+||+.++|||+|||||||++++|+|. |.|++|.|.+--+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n---------------------- 453 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN---------------------- 453 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc----------------------
Confidence 3689999999999999999999999999999999986 6799999986210
Q ss_pred ccchhcccccCcceEEEEcc--ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHH
Q 040758 585 NGELTRSMNRNSRGVFFLPQ--RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD 662 (788)
Q Consensus 585 ~~~~~~~~~~~r~~i~~v~Q--~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 662 (788)
+. -+++|- ||.+=.-|+-|.+.-. ..+...
T Consensus 454 ------t~------~a~iPge~Ep~f~~~tilehl~s~------------------------------------tGD~~~ 485 (593)
T COG2401 454 ------TV------SALIPGEYEPEFGEVTILEHLRSK------------------------------------TGDLNA 485 (593)
T ss_pred ------ch------hhccCcccccccCchhHHHHHhhc------------------------------------cCchhH
Confidence 00 122332 2222222555544211 112233
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----hcC
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AAG 738 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~----~~g 738 (788)
..+.|..+|+.+..-. -...+.||-|||-|..||+++...|.+++.||.-|.||+.|...+...+. +.|
T Consensus 486 AveILnraGlsDAvly-------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g 558 (593)
T COG2401 486 AVEILNRAGLSDAVLY-------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG 558 (593)
T ss_pred HHHHHHhhccchhhhh-------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence 4566777766532111 12245699999999999999999999999999999999999988876654 469
Q ss_pred CEEEEEecCcchhhc--CCEEEEEccCCCC
Q 040758 739 ITYISVGHRRTLYDF--HKRVLRISTVDQN 766 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~--~D~Ilvl~~g~~~ 766 (788)
.|+++||||.++.+- -|+++.+.-|...
T Consensus 559 iTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 559 ITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred CeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 999999999998753 6999888776543
No 405
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.75 E-value=9.8e-15 Score=151.89 Aligned_cols=262 Identities=16% Similarity=0.127 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040758 159 AVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYL 238 (788)
Q Consensus 159 ~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~L 238 (788)
+.+++.++...+.+..|++.+.++|.+..++.........+.++++++.. .......... .+ .......+...+
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~-~~~~~~~~~~~l 76 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFL-LIFLFSYIYF----YL-SSRISQRIRKDL 76 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH-HHHHHHHHHH----HH-HHHHHHHHHHHH
Confidence 34455566667777899999999998765543211111111111111111 1111111100 11 111122345667
Q ss_pred hhhhHHHHhcCCCC--C-Cc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 239 KDQTFYKIQSQSII--D-NP----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 239 r~~~f~~l~~~~~~--~-~~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
|.++|+|+.+.+.. + ++ .+|+++|++.+.+........++..+..++..+++++.++|++++++++..++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~ 156 (275)
T PF00664_consen 77 RKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFL 156 (275)
T ss_dssp HHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHh
Confidence 77777777766542 2 11 37999999999988777777777778877777788889999999999988888999
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRY 391 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (788)
+..++.++..+..++.+++.++..+.+.|..+|+++||+|+.|+.+.+++.+..++..+...+.................
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (275)
T PF00664_consen 157 ISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISY 236 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888999999999999999999999999988766555554444433332222222233333333
Q ss_pred HHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHH
Q 040758 392 LIQILPAAVVAPM-YFSGKIEFGVINQSVSAFNHIL 426 (788)
Q Consensus 392 ~~~~~~~~~~~~l-~~~G~it~G~l~~~~~~~~~~~ 426 (788)
+..++.+.+++++ +..|.+|+|.+..+..++..+.
T Consensus 237 ~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~ 272 (275)
T PF00664_consen 237 LSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLI 272 (275)
T ss_dssp HHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 3344445556777 8899999999876665544443
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.74 E-value=4.5e-18 Score=167.99 Aligned_cols=71 Identities=28% Similarity=0.365 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 692 LSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 692 LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
||+||+||+++||+|.. +|+++|||||++++|+.....+.+.+.+ .+.|+|++||+.++...+|+++.|+.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999999999987 7899999999999999999988887754 36899999999999889999999976
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.70 E-value=9.7e-18 Score=173.92 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCChhHHHHHHHHHHH--ccCCCEEEEecC---CCCCCHHHHHHHH-HHHHh-cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 690 SVLSLGEQQRLAFARLL--LSKPQIVLLDES---TSALDEANEAHLY-EQIEA-AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 690 ~~LSGGQrQRiaIARAL--l~~p~iLiLDEp---TSaLD~~se~~i~-~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
..+|.|++|+..+++++ +.+|+++||||| |++||+....... +.+.+ .|.|+|++||..++.+.||++..+++
T Consensus 88 ~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~ 167 (222)
T cd03285 88 KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKN 167 (222)
T ss_pred cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEE
Confidence 34999999999999999 999999999999 9999999886544 66654 58999999998778889999998888
Q ss_pred CCC
Q 040758 763 VDQ 765 (788)
Q Consensus 763 g~~ 765 (788)
|..
T Consensus 168 g~~ 170 (222)
T cd03285 168 LHV 170 (222)
T ss_pred EEE
Confidence 764
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=2.1e-17 Score=179.33 Aligned_cols=90 Identities=29% Similarity=0.310 Sum_probs=71.1
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCC
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGI 739 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~ 739 (788)
+.+..+.++++..++ ....+|||||-||+|||-|+++++++.++|||||-||....-..-+.+++ .++
T Consensus 194 ~devve~l~L~nvl~---------r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k 264 (591)
T COG1245 194 FDEVVERLGLENVLD---------RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGK 264 (591)
T ss_pred HHHHHHHhcchhhhh---------hhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCC
Confidence 334455555554433 34677999999999999999999999999999999999988666555543 589
Q ss_pred EEEEEecCcchhhc-CCEEEEEc
Q 040758 740 TYISVGHRRTLYDF-HKRVLRIS 761 (788)
Q Consensus 740 TvI~IaHr~~~~~~-~D~Ilvl~ 761 (788)
+||+|-|++.++.+ +|-|-++-
T Consensus 265 ~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 265 YVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred eEEEEechHHHHHHhhheeEEEe
Confidence 99999999998875 78776663
No 409
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=3.4e-17 Score=175.88 Aligned_cols=212 Identities=19% Similarity=0.246 Sum_probs=134.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC---CCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL---WSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl---~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|.++|.+.+-. ++.++.|-||.|-.|.++++|||||-|||||++-|+.- ++|.
T Consensus 264 DIKiEnF~ISA~--Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--------------------- 320 (807)
T KOG0066|consen 264 DIKIENFDISAQ--GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--------------------- 320 (807)
T ss_pred cceeeeeeeecc--cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---------------------
Confidence 488888888874 56788999999999999999999999999999998742 1111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccc--hhhhhhhhh--
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPF--LTSAQKLEN-- 650 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~--i~~~~~~~~-- 650 (788)
-.+-++-|+..--+.|--+.+.-.+.. ....+.++++..+-++- .+..+.+..
T Consensus 321 ----------------------IDvLlCEQEvvad~t~Ai~tvl~aD~k-Rl~lLeee~~L~~q~e~Gd~taaErl~~v~ 377 (807)
T KOG0066|consen 321 ----------------------IDVLLCEQEVVADSTSAIDTVLKADKK-RLALLEEEAKLMSQIEEGDTTAAERLKEVA 377 (807)
T ss_pred ----------------------CceEeeeeeeeecCcHHHHHHHHhhHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 114556666544333333333211100 01111111111110000 000000000
Q ss_pred --hccCCCCCChHHHHHHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 651 --VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 651 --~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
+..-+.........++|.-+ |++.. . .....+|||-|-||++||||+-+|-+|.|||||++||...
T Consensus 378 ~ELraiGA~sAEarARRILAGL----------GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNA 447 (807)
T KOG0066|consen 378 DELRAIGADSAEARARRILAGL----------GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA 447 (807)
T ss_pred HHHHHhccccchhHHHHHHhhc----------CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccce
Confidence 00001111112233333322 33332 2 3356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.-++-+.|..-.+|.++|+|+-.++ ..|..|+.|++-++
T Consensus 448 VIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 448 VIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred eeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 8888888887889999999998877 46999999987554
No 410
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.67 E-value=4.5e-17 Score=166.65 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=58.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH----HHHhcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE----QIEAAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~----~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
+.+|++++| +..+.+++.+|+++||||||+++|+.....+.. .+.+.+.++|++||+.+..+.++++..++.+.
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLH 167 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEE
Confidence 457777776 666678889999999999999999987766543 33346899999999999988888877776654
No 411
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=99.67 E-value=1.8e-13 Score=144.71 Aligned_cols=274 Identities=24% Similarity=0.406 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 164 TFATTGISVGFNFLGRDFYNALADK-------DQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 164 ~~~~~~l~~~~~~l~~~iid~l~~~-------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
+.....+++...-+.+.++|.+... +.++++...+.++.+.++.+.+.++..++......|||..++.+++.+
T Consensus 19 ~~~~v~v~V~iN~W~~~Fyd~iQ~al~~~~~~t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~ 98 (315)
T PF05992_consen 19 TWFQVQVSVAINEWYGPFYDLIQKALSKPGSVTIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSH 98 (315)
T ss_pred HHHHHheeeeehHhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444445667788888888866532 335666655555444444445556666776777789999999999987
Q ss_pred HhhhhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHH
Q 040758 237 YLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIY-------------PPLFVVLL 303 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~-------------~~L~l~~l 303 (788)
| +...-.+-..||+.+|+..+...+..+...++..+++++.+..+|+.++ ..|..+++
T Consensus 99 W---------~~~r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai 169 (315)
T PF05992_consen 99 W---------PKLRHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAI 169 (315)
T ss_pred H---------HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHH
Confidence 6 2232234446899999999999888889999999999999988887754 23677778
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 040758 304 VYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE 383 (788)
Q Consensus 304 l~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (788)
++.++++++....+.|+..+..+.|+.|+.++..++-..++.. . .+. ..+.+.|.+..+++.+........+
T Consensus 170 ~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeLV~gED~~~----r-a~~---~tl~eLF~~Vr~Ny~rly~hy~yfn 241 (315)
T PF05992_consen 170 IWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKELVYGEDDAN----R-AQP---PTLRELFSNVRRNYFRLYFHYMYFN 241 (315)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHHHhcCcccc----c-CCc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999987654444421 1 111 2244677777777777666555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 040758 384 FFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDD 454 (788)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~ 454 (788)
.....+..+..+.+.++.++-++.|.+|+|.+.+...+|.++.+.+..++..+..+.+..+...|+.+++.
T Consensus 242 i~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~tivEL~Si~kRL~~FE~ 312 (315)
T PF05992_consen 242 IARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTTIVELRSIYKRLRAFEA 312 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66666677777788888899999999999999999999999999999999999999999999999988754
No 412
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.67 E-value=1.2e-16 Score=192.68 Aligned_cols=197 Identities=26% Similarity=0.346 Sum_probs=150.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
...+|+|+|.-++||+.+.+.||.|||||||++.|+|-.+-. .|+|.+||.+..+..
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~-------------------- 186 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFV-------------------- 186 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccc--------------------
Confidence 456899999999999999999999999999999999987642 569999765543331
Q ss_pred hcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChH-----H
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-----D 662 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~ 662 (788)
. ++.++|.+|....+. .|++|-+.|...... .+.+....++. -
T Consensus 187 -----~-~~~~aY~~e~DvH~p~lTVreTldFa~rck~-------------------------~~~r~~~~~R~e~~~~~ 235 (1391)
T KOG0065|consen 187 -----P-KKTVAYNSEQDVHFPELTVRETLDFAARCKG-------------------------PGSRYDEVSRREKLAAM 235 (1391)
T ss_pred -----c-CceEEeccccccccceeEEeehhhHHHhccC-------------------------CccccccccHHHHHHHH
Confidence 1 466999999877764 599998877321110 11111111112 2
Q ss_pred HHHHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----
Q 040758 663 LIKALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---- 736 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---- 736 (788)
....++.+|+++ ..||. | +.....|||||.||.+|-+++.+|+++.+||+|.|||..|.-++.+.|++
T Consensus 236 ~d~~lkilGL~~------~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~ 309 (1391)
T KOG0065|consen 236 TDYLLKILGLDH------CADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHI 309 (1391)
T ss_pred HHHHHHHhCchh------hccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhh
Confidence 335677777774 45664 4 45567999999999999999999999999999999999999999999875
Q ss_pred cCCEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 737 AGITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~g~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
.+.|.++.=|.. ++....|.|++|.+|.+
T Consensus 310 ~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~ 340 (1391)
T KOG0065|consen 310 TGATALVSILQPSPEIYDLFDDVILLSEGYQ 340 (1391)
T ss_pred hcceEEEEeccCChHHHHhhhheeeeeccce
Confidence 488888888874 56788899999999965
No 413
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=6.1e-16 Score=178.17 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=72.7
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCC
Q 040758 682 LDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHK 755 (788)
Q Consensus 682 ~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D 755 (788)
|-+.|....+|||||.|||-+|.-|.++. -+.||||||.+|-.+-.+++++.|.+ .|-|||+|-|.+++++.||
T Consensus 813 Yi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD 892 (935)
T COG0178 813 YIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTAD 892 (935)
T ss_pred eEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecC
Confidence 33457778899999999999999999988 99999999999999999888887764 7999999999999999999
Q ss_pred EEEEEcc
Q 040758 756 RVLRIST 762 (788)
Q Consensus 756 ~Ilvl~~ 762 (788)
+|+-|-.
T Consensus 893 ~IIDLGP 899 (935)
T COG0178 893 WIIDLGP 899 (935)
T ss_pred EEEEcCC
Confidence 9998853
No 414
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.63 E-value=1.4e-15 Score=192.25 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=74.2
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcC
Q 040758 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSK---PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFH 754 (788)
Q Consensus 681 g~~t~~e~g~~LSGGQrQRiaIARALl~~---p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~ 754 (788)
||-+.+....+|||||.|||-||.-|.++ +.++||||||.+|++...+.+.+.|++ .|.|+|+|.|++++++.|
T Consensus 1689 gYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~a 1768 (1809)
T PRK00635 1689 GYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQA 1768 (1809)
T ss_pred CeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhC
Confidence 34445778889999999999999999876 789999999999999999999888654 799999999999999999
Q ss_pred CEEEEEccC
Q 040758 755 KRVLRISTV 763 (788)
Q Consensus 755 D~Ilvl~~g 763 (788)
|+|+.|..|
T Consensus 1769 D~iidlgp~ 1777 (1809)
T PRK00635 1769 DYLIEMGPG 1777 (1809)
T ss_pred CEEEEcCCC
Confidence 999999754
No 415
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2e-15 Score=161.40 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=63.7
Q ss_pred CCCCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcC---CE
Q 040758 689 SSVLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFH---KR 756 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~---D~ 756 (788)
...+|+||||+++|||+|+ .+|++++|||||++||+.....+.+.+.+.+.++|+++|+..+..+| ++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~ 260 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQ 260 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCcc
Confidence 4458999999999999984 79999999999999999999999999987665555555555655666 78
Q ss_pred EEEEccCC
Q 040758 757 VLRISTVD 764 (788)
Q Consensus 757 Ilvl~~g~ 764 (788)
++.+++|+
T Consensus 261 i~~l~~g~ 268 (270)
T cd03242 261 IFRVDAGT 268 (270)
T ss_pred EEEEeCcE
Confidence 99999875
No 416
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.61 E-value=1.4e-15 Score=159.89 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=73.5
Q ss_pred CCcccc-ccCCCCCChhH--------HHHHHHHHHHccCCCEEEEecCCCCCCHHHHH--HHHHHHHhcCCEEEEEecCc
Q 040758 680 NSLDTT-YEWSSVLSLGE--------QQRLAFARLLLSKPQIVLLDESTSALDEANEA--HLYEQIEAAGITYISVGHRR 748 (788)
Q Consensus 680 ~g~~t~-~e~g~~LSGGQ--------rQRiaIARALl~~p~iLiLDEpTSaLD~~se~--~i~~~L~~~g~TvI~IaHr~ 748 (788)
+++++. ++.|..+|||| +||+++||+++++++|.+| ||+.+|+.++. -+.+.++..+.|.|+++||+
T Consensus 117 ~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~l 194 (249)
T cd01128 117 RAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRL 194 (249)
T ss_pred hhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHH
Confidence 567776 68889999999 9999999999999999999 99999976665 34555665789999999999
Q ss_pred chhhcCCEEEEEccCCC
Q 040758 749 TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 749 ~~~~~~D~Ilvl~~g~~ 765 (788)
....++|.|.||+.|..
T Consensus 195 a~~~~~paI~vl~s~sr 211 (249)
T cd01128 195 AERRIFPAIDILKSGTR 211 (249)
T ss_pred hhCCCCCeEEEcCCCCc
Confidence 99999999999999865
No 417
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.61 E-value=8.8e-16 Score=156.72 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=87.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++++|++|+. |++++|+||||||||||+|+|++..-. .. .|.++.
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~---~G~~v~----------------------- 59 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQ---AGAPVC----------------------- 59 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HH---cCCEEe-----------------------
Confidence 346778887775 799999999999999999999874321 11 111110
Q ss_pred cccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
. -.+++|...+| ..|+.||+..+..... ....++.++++.+
T Consensus 60 ----a--~~~~~q~~~l~~~~~~~d~l~~~~s~~~--------------------------------~e~~~~~~iL~~~ 101 (199)
T cd03283 60 ----A--SSFELPPVKIFTSIRVSDDLRDGISYFY--------------------------------AELRRLKEIVEKA 101 (199)
T ss_pred ----c--CccCcccceEEEeccchhccccccChHH--------------------------------HHHHHHHHHHHhc
Confidence 0 12455654455 4588888876531100 0012233333322
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH----HHHhcCCEEEEEec
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE----QIEAAGITYISVGH 746 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~----~L~~~g~TvI~IaH 746 (788)
+ ..+|+++|+||||+++|+.....+.. .+.+.|.|+|++||
T Consensus 102 ~-----------------------------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH 146 (199)
T cd03283 102 K-----------------------------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTH 146 (199)
T ss_pred c-----------------------------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 1 16999999999999999998765543 33446899999999
Q ss_pred Ccchhhc
Q 040758 747 RRTLYDF 753 (788)
Q Consensus 747 r~~~~~~ 753 (788)
+++.+..
T Consensus 147 ~~~~~~~ 153 (199)
T cd03283 147 DLELADL 153 (199)
T ss_pred cHHHHHh
Confidence 9876543
No 418
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.57 E-value=1.2e-14 Score=148.74 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=50.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH----HHHHHHhcCCEEEEEecCcchhhc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGHRRTLYDF 753 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~----i~~~L~~~g~TvI~IaHr~~~~~~ 753 (788)
.+++|+|++|+. .+-+++.+|+++|||||++++|+..... +.+.+.+.|.++|++||+.++.+.
T Consensus 89 ~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 89 LSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred hhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 456999999764 5556789999999999999999976443 344455579999999999887654
No 419
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.56 E-value=7.9e-15 Score=151.62 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=49.2
Q ss_pred HHHHHH--ccCCCEEEEecC---CCCCCHHHH-HHHHHHHHhc-CCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 701 AFARLL--LSKPQIVLLDES---TSALDEANE-AHLYEQIEAA-GITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 701 aIARAL--l~~p~iLiLDEp---TSaLD~~se-~~i~~~L~~~-g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.+++++ +.+|+++||||| |+++|.... ..+.+.|.+. +.|+|++||+.++.+.+|++..+++|.
T Consensus 99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~ 169 (216)
T cd03284 99 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFH 169 (216)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEE
Confidence 455555 469999999999 999998763 5566777665 899999999988877777765555543
No 420
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.53 E-value=1.4e-14 Score=131.97 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=63.1
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
..+|++++|++++||.++|+||||||||||+++++ +|++.++|.|...+ +.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~-----------------------~~ 52 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEI-----------------------RE 52 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHh-----------------------hh
Confidence 46899999999999999999999999999999987 89999965543322 11
Q ss_pred ccCcceEEEEccccccCCCCHHHHhcCC
Q 040758 593 NRNSRGVFFLPQRPYMVLGSLRQQLIYP 620 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~ 620 (788)
+..++.++++||+ +|.+||+|||.++
T Consensus 53 ~~~~~~~~~~~q~--lf~~ti~~Ni~~~ 78 (107)
T cd00820 53 DSKDELIGRNPEL--GLEIRLRLNIFLI 78 (107)
T ss_pred hhcCCEEEEechh--cchhhHHhhceee
Confidence 2334557888888 9999999999984
No 421
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=3.9e-14 Score=172.16 Aligned_cols=75 Identities=27% Similarity=0.304 Sum_probs=69.1
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+....+|||||+|||+|||||..+| +++||||||++||+.....+.+.|++ .|.|||+|+|+++.+..||+|++|
T Consensus 482 ~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~L 561 (924)
T TIGR00630 482 SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDI 561 (924)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEe
Confidence 4457789999999999999999986 89999999999999999999888764 699999999999988899999999
No 422
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.50 E-value=4.4e-14 Score=172.00 Aligned_cols=75 Identities=27% Similarity=0.315 Sum_probs=68.8
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+....+|||||||||+|||||..+| +++||||||++||+.....+.+.|++ .|.|||+|+|+++.+..||+|++|
T Consensus 484 ~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 484 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred CCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 3456789999999999999999997 99999999999999999999888764 699999999999888889999999
No 423
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.48 E-value=1.8e-13 Score=145.53 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=34.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
+.++|+||||||||||+++|+|++.|++|+|.++|.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEE
Confidence 6899999999999999999999999999999996443
No 424
>COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism]
Probab=99.48 E-value=4.4e-10 Score=116.37 Aligned_cols=275 Identities=25% Similarity=0.408 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHHHHh----hcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040758 167 TTGISVGFNFLGRDFYNAL----ADKD---QEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLK 239 (788)
Q Consensus 167 ~~~l~~~~~~l~~~iid~l----~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr 239 (788)
..-+++....+.+.+.|-+ ..+. ..+|......+..+.++++...++..++...-.-|||..++.+++.+|
T Consensus 100 ~vqvsvain~wy~pf~d~~q~als~~~~~t~~~fY~~~~vF~~IA~~~v~i~vln~ffvShyiFrWRtAMn~~ym~~W-- 177 (405)
T COG1133 100 LVQVSVAVNAWYGPFYDLIQNALSSPPKVTAGQFYSLVGVFLGIALIAVVISVLNNFFVSHYIFRWRTAMNEYYMANW-- 177 (405)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHhh--
Confidence 3345666677777777743 3322 245655555555555555555666666666666799999999988876
Q ss_pred hhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHHHHH
Q 040758 240 DQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIY-------------PPLFVVLLVYS 306 (788)
Q Consensus 240 ~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~-------------~~L~l~~ll~~ 306 (788)
+++.-.+-..||+.+|..++...+..+..+++..+++++.+..+|+.++ -.|.++.+++.
T Consensus 178 -------~klrhIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~ws 250 (405)
T COG1133 178 -------QKLRHIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWS 250 (405)
T ss_pred -------hhhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHH
Confidence 3333344446899999999999888888999999999999988887754 34677788888
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT 386 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (788)
+.++.+....+-|+-.+..+.|+.|+.++..++-..++.+ ...-. ...+.|.....++.+...-..-.+...
T Consensus 251 lfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgEDh~d----rA~p~----T~~ELf~nvr~NYfRLyfHY~YFNiar 322 (405)
T COG1133 251 LFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGEDHAD----RATPP----TVRELFSNVRKNYFRLYFHYMYFNIAR 322 (405)
T ss_pred HhchHHHHhhhccCCCcccccHHHHHHHHhhhhccCCchh----hcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888988888888889999999876643333311 01111 112344444444444332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhccc
Q 040758 387 SGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDS 458 (788)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~ 458 (788)
-.+-..-.+.++.+.++-...|++|+|.+.+...+|.++-+.+..++..+..+.+..+...|+.+++..++.
T Consensus 323 i~ylQ~dnif~llil~PsivAgkitlG~~~QI~n~FgqVr~SfqylinsWTTIveL~SIyKRLraFE~~i~~ 394 (405)
T COG1133 323 ILYLQVDNIFGLLILFPSIVAGKITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRAFEAALDG 394 (405)
T ss_pred HHHHHHHHHHHHHHHhhHHHhchhhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 223334445566677788899999999999999999999999999999998888899999999988766554
No 425
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.44 E-value=4.4e-13 Score=144.87 Aligned_cols=178 Identities=26% Similarity=0.337 Sum_probs=124.5
Q ss_pred EEcCCCCccceeeeeEEEeCCC-----EEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEEeeccCcccccCCCccchhhh
Q 040758 506 LKTPTSKATLVRDLSLVINEKE-----HLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 506 f~y~~~~~~vL~~isl~i~~Ge-----~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
++||+ .+..+.+..|.|+.|+ ++..+|+||-||||++++++|..+|++| +|-.
T Consensus 343 y~Yp~-m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-------------------- 401 (592)
T KOG0063|consen 343 YSYPK-MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-------------------- 401 (592)
T ss_pred eccCc-ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--------------------
Confidence 67885 5567899999999985 6889999999999999999999999876 2211
Q ss_pred cccccccchhcccccCcceEEEEccccc-cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPY-MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
-+++|=||... -+.+|+|+-+. +..+.+..|+..
T Consensus 402 -----------------lnVSykpqkispK~~~tvR~ll~------------~kIr~ay~~pqF---------------- 436 (592)
T KOG0063|consen 402 -----------------LNVSYKPQKISPKREGTVRQLLH------------TKIRDAYMHPQF---------------- 436 (592)
T ss_pred -----------------cceeccccccCccccchHHHHHH------------HHhHhhhcCHHH----------------
Confidence 12667777542 34567765442 111122222211
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH----HHH
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY----EQI 734 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~----~~L 734 (788)
+-+.++-+.++++. +....+|||||.||+|+|-+|=+.+++.+.|||.+-||.+.+...- +.+
T Consensus 437 ----~~dvmkpL~ie~i~---------dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfi 503 (592)
T KOG0063|consen 437 ----VNDVMKPLQIENII---------DQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI 503 (592)
T ss_pred ----HHhhhhhhhHHHHH---------hHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHH
Confidence 11223333333222 2234569999999999999999999999999999999998875433 334
Q ss_pred HhcCCEEEEEecCcchhh-cCCEEEEEcc
Q 040758 735 EAAGITYISVGHRRTLYD-FHKRVLRIST 762 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~~-~~D~Ilvl~~ 762 (788)
-..++|-.++.|+.-... .+||++|.+.
T Consensus 504 lhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 504 LHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 457899999999964443 4899999874
No 426
>PRK00064 recF recombination protein F; Reviewed
Probab=99.41 E-value=1.7e-12 Score=144.29 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=64.8
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh-hc--CCEE
Q 040758 690 SVLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY-DF--HKRV 757 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~-~~--~D~I 757 (788)
..+|.||+|+++||++|. .+||+|+||||+|+||+.....+.+.+.+.+.++++++|+...+ .. .+++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~i 351 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAKI 351 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCcE
Confidence 579999999999999885 79999999999999999999999999876567889999986543 22 4589
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
+.|++|+.
T Consensus 352 ~~v~~G~i 359 (361)
T PRK00064 352 FHVEQGKI 359 (361)
T ss_pred EEEeCCEE
Confidence 99998854
No 427
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.41 E-value=4.3e-12 Score=131.36 Aligned_cols=72 Identities=26% Similarity=0.436 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 691 VLSLGEQQRLAFARLL----LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 691 ~LSGGQrQRiaIARAL----l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.||||||-+++||--| +.++|++||||+.++||......+.+.|++ .+.-+|++||+..+...||+.+.+..
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~~ 213 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVTM 213 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6999999999998544 468999999999999999999999999987 35889999999999999999988754
No 428
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=8.2e-13 Score=168.89 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=93.9
Q ss_pred cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccccc
Q 040758 608 MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYE 687 (788)
Q Consensus 608 lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e 687 (788)
.|+||++|||.+ .++.+.+ ..+++.++.+.|+.. .+.| ++...
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~---------------------------------~~~~-~~~~~ 1195 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVV---------------------------------MLKG-DTALD 1195 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhc---------------------------------cCCC-CeecC
Confidence 478999999999 5443322 344444444333221 2245 56544
Q ss_pred CCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--------cCCEEEEEecCcchhh-
Q 040758 688 WSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--------AGITYISVGHRRTLYD- 752 (788)
Q Consensus 688 ~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--------~g~TvI~IaHr~~~~~- 752 (788)
....||||||| |++|||||+.+|++|+|||||++||+.+...+.+.|.. .|.|+|+|||++..+.
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 44589999999 99999999999999999999999999999988876642 3789999999987542
Q ss_pred -----cCCEEEEEccCCCCCCCCCeEEEecCccc
Q 040758 753 -----FHKRVLRISTVDQNSSQSNWKLEFIDQES 781 (788)
Q Consensus 753 -----~~D~Ilvl~~g~~~~~~~~~~~~~~~~~~ 781 (788)
+||+.+.+.. +..+.=.++..+|+.
T Consensus 1276 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 1305 (1311)
T TIGR00606 1276 LGRSEYVEKFYRLKK----NEDQCSEIVKCSPSS 1305 (1311)
T ss_pred Hhhccccceeeeeee----ccccCceeEeeCCcc
Confidence 4678787765 233334444445543
No 429
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.39 E-value=3e-13 Score=136.53 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=49.8
Q ss_pred CCCCChhHHHHHHHHHHHcc--CCCEEEEecCCCCCCHHHHHHHHH----HHHh-cCCEEEEEecCcchhhcCCE
Q 040758 689 SSVLSLGEQQRLAFARLLLS--KPQIVLLDESTSALDEANEAHLYE----QIEA-AGITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~--~p~iLiLDEpTSaLD~~se~~i~~----~L~~-~g~TvI~IaHr~~~~~~~D~ 756 (788)
.++||+|++| +++++.. +|+++|+||||+++|+.....+.. .+.+ .+.++|++||..++.+.+|+
T Consensus 59 ~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 59 LSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred ccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 4568888887 4555555 999999999999999997766543 3334 38899999999987777764
No 430
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.37 E-value=3e-12 Score=132.16 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH----HHHHHhc---CCEEEEEecCcchhhc
Q 040758 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL----YEQIEAA---GITYISVGHRRTLYDF 753 (788)
Q Consensus 694 GGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i----~~~L~~~---g~TvI~IaHr~~~~~~ 753 (788)
.-+-||+++|++++.+|+++|||||++++|+.....+ .+.+.+. +.++|++||..++.+.
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 3467999999999999999999999999998654333 3333333 3589999999887654
No 431
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.37 E-value=7e-13 Score=159.59 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH----HHHhcCCEEEEEecCcchhhc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE----QIEAAGITYISVGHRRTLYDF 753 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~----~L~~~g~TvI~IaHr~~~~~~ 753 (788)
.++||+|++|+..|++++ .+|+++|||||++++|+..-..+.. .+.+.|.++|++||..++..+
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 356999999999999887 7899999999999999999887743 333468999999999776443
No 432
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.31 E-value=3.7e-12 Score=150.00 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHHHc----------cCCCEEEEecCC-CCCCHHHHHHHHHHHHh-cCCEEEEEecCcchhhcCCEE
Q 040758 690 SVLSLGEQQRLAFARLLL----------SKPQIVLLDEST-SALDEANEAHLYEQIEA-AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl----------~~p~iLiLDEpT-SaLD~~se~~i~~~L~~-~g~TvI~IaHr~~~~~~~D~I 757 (788)
..||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|.+ .|.|+|+|||+......||++
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~ 546 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRH 546 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcE
Confidence 679999999999999987 599999999998 78999999999998877 688999999998888889999
Q ss_pred EEEcc
Q 040758 758 LRIST 762 (788)
Q Consensus 758 lvl~~ 762 (788)
++|++
T Consensus 547 ~~l~~ 551 (562)
T PHA02562 547 LKMEK 551 (562)
T ss_pred EEEEE
Confidence 99987
No 433
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.26 E-value=1.2e-11 Score=145.35 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=74.6
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 690 SVLSLGEQQRLAFARLLLSK----PQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~----p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|++ .++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 45999999999999999985 699999999999999999999998875 589999999999988899999999987
Q ss_pred CCCCCCCCeEEEecCcc
Q 040758 764 DQNSSQSNWKLEFIDQE 780 (788)
Q Consensus 764 ~~~~~~~~~~~~~~~~~ 780 (788)
.. ++..-=++..++.+
T Consensus 519 ~~-~~~t~s~i~~L~~~ 534 (563)
T TIGR00634 519 GL-DGRTATRVRPLSGE 534 (563)
T ss_pred cC-CCcEEEEEEECCcc
Confidence 42 11122445555543
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.25 E-value=5.2e-12 Score=126.09 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEec--CCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDE--STSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDE--pTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
...+||+++-++.+++..+.+|+++++|| |+..+|....+.+.+.+ +.++++|+++|+.....++|+|..+.+|..
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i- 153 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRV- 153 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEE-
Confidence 34599999999999999999999999999 66677766666666666 678999999999777788999999988754
Q ss_pred CCCCCeEEEecCcccccc
Q 040758 767 SSQSNWKLEFIDQESLYN 784 (788)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~ 784 (788)
..+..-+-|+|||
T Consensus 154 -----~~~~~~~r~~~~~ 166 (174)
T PRK13695 154 -----YELTPENRDSLPF 166 (174)
T ss_pred -----EEEcchhhhhHHH
Confidence 3344444455554
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.24 E-value=2.3e-11 Score=126.12 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=43.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEE
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITF 559 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~ 559 (788)
++.+.+|++|.+++|++++|+||||+||||+++.+++ .+.++.|....
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3568899999999999999999999999999999999 77888887764
No 436
>PRK10869 recombination and repair protein; Provisional
Probab=99.21 E-value=3.5e-11 Score=140.60 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=68.5
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 691 VLSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.|||||+|||+|||+++. +|+++||||||++||..+...+.+.|++ .+.|+|+|||++.+..+||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 499999999999999996 6899999999999999999999998875 5799999999999999999999999863
No 437
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.20 E-value=1.9e-11 Score=126.09 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHccCCCEEEEecCC-----CCCCHHHHHHHHHHHHh
Q 040758 696 EQQRLAFARLLLSKPQIVLLDEST-----SALDEANEAHLYEQIEA 736 (788)
Q Consensus 696 QrQRiaIARALl~~p~iLiLDEpT-----SaLD~~se~~i~~~L~~ 736 (788)
|++++.|||+++.+|++++||||| ++||+.+.+.+.+.+.+
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~ 202 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA 202 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999998875
No 438
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.13 E-value=7.7e-11 Score=127.80 Aligned_cols=186 Identities=22% Similarity=0.224 Sum_probs=113.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
+||+..++||.||-||||-++.++|-.+|.-|.--- +-+.+++ +...| |-=-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~i------------------------l~~fr---gsel 149 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEI------------------------LTYFR---GSEL 149 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHH------------------------hhhhh---hHHH
Confidence 589999999999999999999999999998875421 0011110 00000 0001
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD 683 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 683 (788)
|+ .|..-+.+|+.-......+..+-+++|.+- .. .+..+... ....++.+...++...+
T Consensus 150 q~--yftk~le~~lk~~~kpQyvd~ipr~~k~~v-------~~---~l~~~~~r---~~~~~~~~~~~L~~~~~------ 208 (592)
T KOG0063|consen 150 QN--YFTKILEDNLKAIIKPQYVDQIPRAVKGTV-------GS---LLDRKDER---DNKEEVCDQLDLNNLLD------ 208 (592)
T ss_pred hh--hhhhhccccccCcCChHHHHHHHHHHHHHH-------HH---HHHHHhhc---ccHHHHHHHHHHhhHHH------
Confidence 11 122223444433222222333333333210 00 01111111 12334444444443332
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhc-CCEEEE
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDF-HKRVLR 759 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~-~D~Ilv 759 (788)
.....|||||-||.|||.+.++++++.++|||.|-||.+....--..++ ..++=+|+|-|+++++.+ .|-|..
T Consensus 209 ---re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc 285 (592)
T KOG0063|consen 209 ---REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC 285 (592)
T ss_pred ---hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE
Confidence 2345699999999999999999999999999999999998865544444 468899999999998875 677766
Q ss_pred Ec
Q 040758 760 IS 761 (788)
Q Consensus 760 l~ 761 (788)
+-
T Consensus 286 LY 287 (592)
T KOG0063|consen 286 LY 287 (592)
T ss_pred Ee
Confidence 64
No 439
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.13 E-value=6.3e-10 Score=125.85 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=50.6
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.++.++
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev 199 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREV 199 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccH
Confidence 45689999 99999999999999999999999999999999999999987777655
No 440
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.09 E-value=9.4e-10 Score=114.98 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHHcc----CCCEEEEecCCCCC----CHHHHHHHHHHHH---hcCCEEEEEecCcch-------h-h
Q 040758 692 LSLGEQQRLAFARLLLS----KPQIVLLDESTSAL----DEANEAHLYEQIE---AAGITYISVGHRRTL-------Y-D 752 (788)
Q Consensus 692 LSGGQrQRiaIARALl~----~p~iLiLDEpTSaL----D~~se~~i~~~L~---~~g~TvI~IaHr~~~-------~-~ 752 (788)
+|+++.++-.+++.+-. +|+++++||||+.+ |+...+.+.+.++ +.|.|+++++|.... . -
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~ 175 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT 175 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence 67777666555554443 69999999999999 7776677777665 457777665553221 1 2
Q ss_pred cCCEEEEEcc
Q 040758 753 FHKRVLRIST 762 (788)
Q Consensus 753 ~~D~Ilvl~~ 762 (788)
.||-|+.|+.
T Consensus 176 ~~DgvI~L~~ 185 (230)
T PRK08533 176 AATMLIRLEV 185 (230)
T ss_pred eeeEEEEEEE
Confidence 3788888874
No 441
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.09 E-value=2.6e-10 Score=137.93 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=54.4
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH----HHhcCCEEEEEecCcchhhc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ----IEAAGITYISVGHRRTLYDF 753 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~----L~~~g~TvI~IaHr~~~~~~ 753 (788)
.+++|+|++|++.|++++ .+|+++|||||++++|+.....+... +.+.|.++|++||..++..+
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 456999999999999998 89999999999999999987766443 34468999999999887654
No 442
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.06 E-value=7.8e-10 Score=111.05 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCC---HHHHHHHHHHH---HhcCCEEEEEecCcc------
Q 040758 688 WSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALD---EANEAHLYEQI---EAAGITYISVGHRRT------ 749 (788)
Q Consensus 688 ~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD---~~se~~i~~~L---~~~g~TvI~IaHr~~------ 749 (788)
....+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.+ ++.|.|+|+++|...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34568999999 4444444567999999999999999 66565555544 457999999999854
Q ss_pred ----hhhcCCEEEEEccC
Q 040758 750 ----LYDFHKRVLRISTV 763 (788)
Q Consensus 750 ----~~~~~D~Ilvl~~g 763 (788)
+...||.|+.|+.-
T Consensus 148 ~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 148 GGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred CcCceeEeeeEEEEEEEE
Confidence 34569999999853
No 443
>PRK03918 chromosome segregation protein; Provisional
Probab=99.02 E-value=4.7e-10 Score=139.15 Aligned_cols=76 Identities=33% Similarity=0.356 Sum_probs=67.0
Q ss_pred CCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEE
Q 040758 688 WSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 688 ~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Il 758 (788)
.+..|||||+| |+||||+++.+|+++||||||++||+.....+.+.|.. .+.|+|+|||+.++...||+++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 35679999999 56666789999999999999999999999999888754 4789999999998888999999
Q ss_pred EEccC
Q 040758 759 RISTV 763 (788)
Q Consensus 759 vl~~g 763 (788)
+|+.+
T Consensus 865 ~l~~~ 869 (880)
T PRK03918 865 RVSLE 869 (880)
T ss_pred EEEec
Confidence 99864
No 444
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.02 E-value=5.5e-10 Score=140.41 Aligned_cols=76 Identities=21% Similarity=0.157 Sum_probs=68.2
Q ss_pred CCCCCChhHHHHHHHHHHHcc----------CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchh-hc
Q 040758 688 WSSVLSLGEQQRLAFARLLLS----------KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLY-DF 753 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIARALl~----------~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~-~~ 753 (788)
...+|||||++|++||+||+. +|++|||||||++||+++...+.+.|.+ .|+||++|||..++. .+
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 457899999999999999985 7999999999999999999999888864 689999999998765 67
Q ss_pred CCEEEEEccC
Q 040758 754 HKRVLRISTV 763 (788)
Q Consensus 754 ~D~Ilvl~~g 763 (788)
+|+|.|+..+
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999765
No 445
>PRK01156 chromosome segregation protein; Provisional
Probab=99.00 E-value=7.4e-10 Score=137.58 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=66.0
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----hc-C-CEEEEEecCcchhhcCC
Q 040758 688 WSSVLSLGEQQRLAF------ARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AA-G-ITYISVGHRRTLYDFHK 755 (788)
Q Consensus 688 ~g~~LSGGQrQRiaI------ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~----~~-g-~TvI~IaHr~~~~~~~D 755 (788)
.+..||||||||++| ||+|+.+|++++|||||++||+.....+.+.+. .. + .|+|+|||+.++...||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999998887764 22 3 48999999999989999
Q ss_pred EEEEEcc
Q 040758 756 RVLRIST 762 (788)
Q Consensus 756 ~Ilvl~~ 762 (788)
+|+.+..
T Consensus 878 ~ii~~~~ 884 (895)
T PRK01156 878 VAYEVKK 884 (895)
T ss_pred eEEEEEe
Confidence 9999984
No 446
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.96 E-value=1.8e-09 Score=121.26 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=51.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.++-++++..|++ +..+++++ |++.+||+++|+|+||+|||||+++|+|..+|+.|.|.+.
T Consensus 130 ~~~r~~i~~~l~T-GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~i 190 (432)
T PRK06793 130 AFEREEITDVFET-GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLV 190 (432)
T ss_pred chheechhhccCC-CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeC
Confidence 3666777777764 45688885 9999999999999999999999999999999998877653
No 447
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.95 E-value=1.5e-09 Score=118.32 Aligned_cols=41 Identities=29% Similarity=0.548 Sum_probs=38.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+++.+++|+.++|+||+|||||||+++|++++++..|.+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE
Confidence 56789999999999999999999999999999999998877
No 448
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.89 E-value=1.9e-09 Score=137.36 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=67.2
Q ss_pred cCCCCCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 687 EWSSVLSLGEQQRLAFARLL----LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARAL----l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
..+..||||||||++|||++ +++|+++||||||++||+.+...+.+.|.. .+.|+|+|||+++....||+++.+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 34578999999999999998 477899999999999999999999988865 468999999999988899999876
Q ss_pred cc
Q 040758 761 ST 762 (788)
Q Consensus 761 ~~ 762 (788)
..
T Consensus 1165 ~~ 1166 (1179)
T TIGR02168 1165 TM 1166 (1179)
T ss_pred ee
Confidence 53
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.88 E-value=1.6e-08 Score=104.73 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.6
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++.+-+|++|++++|++++|.||||+||||+++.++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 35688999999999999999999999999999998754
No 450
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.87 E-value=5.9e-09 Score=106.49 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEc
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
+++++|..+|+++++||+. |.++...+.+.. ..|.+++.++|..+.....||++.+-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhHHHhhc
Confidence 4788999999999999996 666554444433 36899999999988777778887664
No 451
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.85 E-value=8.7e-10 Score=123.61 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=43.9
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEEeeccC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITFYVKDR 564 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~~~~~~ 564 (788)
.+|+++|+++++||+++|+||||||||||++ .|+..|++| +|.++|.+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 5899999999999999999999999999999 788888888 799965543
No 452
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.80 E-value=9.6e-09 Score=128.85 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=64.6
Q ss_pred cCCCCCChhHHHHHHHHHHHcc--------CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhh-cC
Q 040758 687 EWSSVLSLGEQQRLAFARLLLS--------KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYD-FH 754 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl~--------~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~-~~ 754 (788)
....+|||||+|+++|||||.. +|++|||||||++||+.+...+.+.|.. .|+||++|||...+.. ..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 3467899999999999999995 8999999999999999999999888754 6999999999777654 45
Q ss_pred CEEEEEcc
Q 040758 755 KRVLRIST 762 (788)
Q Consensus 755 D~Ilvl~~ 762 (788)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 56666653
No 453
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.80 E-value=4.8e-08 Score=108.12 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=52.2
Q ss_pred CCCcEEEeeeEEEcCCCCcccee-----------eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVR-----------DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~-----------~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
..+.+.|+||+|.||+ ++.+|+ |+++.|.+||+++||||+|||||||+++|++.+...
T Consensus 127 ~~~ri~Fe~LTf~YP~-er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 127 AKNRVLFENLTPLYPN-ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred cCCCeEEEEeeecCCC-ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 4568999999999996 557897 999999999999999999999999999999987643
No 454
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.77 E-value=9.3e-09 Score=131.12 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=67.7
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 689 SSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
...||||||++++||++|+ .+||++||||||++||+.....+.+.|.+ .+.++|+|||+..++..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 4579999999999999997 47899999999999999999999998875 46789999999988899999998875
Q ss_pred C
Q 040758 763 V 763 (788)
Q Consensus 763 g 763 (788)
.
T Consensus 1152 ~ 1152 (1164)
T TIGR02169 1152 R 1152 (1164)
T ss_pred e
Confidence 3
No 455
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=98.77 E-value=5.8e-08 Score=118.86 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred HccCCCEEEEecCCCCC-CHHHHHHHHHHHH---hcCCEEEEEecCcchh----------hcCCEEEEEccCCC
Q 040758 706 LLSKPQIVLLDESTSAL-DEANEAHLYEQIE---AAGITYISVGHRRTLY----------DFHKRVLRISTVDQ 765 (788)
Q Consensus 706 Ll~~p~iLiLDEpTSaL-D~~se~~i~~~L~---~~g~TvI~IaHr~~~~----------~~~D~Ilvl~~g~~ 765 (788)
+..+|+++++|||+++| |+...+.+.+.++ +.|.++|++||+++.+ ..||+.++|.+|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 36799999999999999 6888888887775 4699999999998643 57999999988753
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.77 E-value=4.8e-08 Score=94.78 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCH----------HHHHHHHHHH---HhcCCEEEEEecCcc
Q 040758 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDE----------ANEAHLYEQI---EAAGITYISVGHRRT 749 (788)
Q Consensus 692 LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~----------~se~~i~~~L---~~~g~TvI~IaHr~~ 749 (788)
.+.++.++++.+++...+|+++++||+++-++. ...+.+.+.+ ++.+.|+|+++|...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 455666788899999999999999999965544 3334444433 235999999999753
No 457
>PRK02224 chromosome segregation protein; Provisional
Probab=98.70 E-value=2.3e-08 Score=124.25 Aligned_cols=75 Identities=31% Similarity=0.417 Sum_probs=65.1
Q ss_pred CCCCChhHHH------HHHHHHHHccC-----C-CEEEEecCCCCCCHHHHHHHHHHHHh---cC-CEEEEEecCcchhh
Q 040758 689 SSVLSLGEQQ------RLAFARLLLSK-----P-QIVLLDESTSALDEANEAHLYEQIEA---AG-ITYISVGHRRTLYD 752 (788)
Q Consensus 689 g~~LSGGQrQ------RiaIARALl~~-----p-~iLiLDEpTSaLD~~se~~i~~~L~~---~g-~TvI~IaHr~~~~~ 752 (788)
+..||||||| |+|+||++..+ | +++||||||++||+.....+.+.|.. .| .++|+|||+.+++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4689999999 99999999864 3 67999999999999999998887754 35 48999999999888
Q ss_pred cCCEEEEEccC
Q 040758 753 FHKRVLRISTV 763 (788)
Q Consensus 753 ~~D~Ilvl~~g 763 (788)
.||+++.|.+.
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999754
No 458
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.67 E-value=2.5e-07 Score=96.85 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHHHHcc--CCCEEEEecCCCCCC---HHHHHHHHHHH---HhcCCEEEEEecCcch--------hhcC
Q 040758 691 VLSLGEQQRLAFARLLLS--KPQIVLLDESTSALD---EANEAHLYEQI---EAAGITYISVGHRRTL--------YDFH 754 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~--~p~iLiLDEpTSaLD---~~se~~i~~~L---~~~g~TvI~IaHr~~~--------~~~~ 754 (788)
..|.++++.+...+.++. +|+++++||||+.+| ......+.+.+ .+.|.|+++++|.... ...+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 367789999999999998 999999999996544 44444443334 3468999999997542 3457
Q ss_pred CEEEEEccC
Q 040758 755 KRVLRISTV 763 (788)
Q Consensus 755 D~Ilvl~~g 763 (788)
|-++.|+..
T Consensus 180 DgvI~L~~~ 188 (234)
T PRK06067 180 DVYLKLRAE 188 (234)
T ss_pred EEEEEEEee
Confidence 888888753
No 459
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.64 E-value=5.4e-08 Score=109.70 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+.++.++++..|.+ +..+++.++ +|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.+++++
T Consensus 138 ~~~~r~~v~~~l~T-Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev 206 (450)
T PRK06002 138 PAMTRARVETGLRT-GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREV 206 (450)
T ss_pred CCeEeecceEEcCC-CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccH
Confidence 46899999999975 567899996 9999999999999999999999999999999999998866666655
No 460
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.63 E-value=1.5e-07 Score=95.19 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=41.9
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+=+.+.+++|+.++|+||||||||||++.|+++++|+.|.|.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie 59 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE 59 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence 4566678899999999999999999999999999999999999873
No 461
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.52 E-value=2.6e-07 Score=108.00 Aligned_cols=80 Identities=26% Similarity=0.304 Sum_probs=68.4
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccC--CCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhcCCEEE
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSK--PQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~--p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|......+|||||.|||-+|.-+=.+ -=+.+||||+.+|=+.--..+.+.|+ ..|-|+|+|.||.++++.||+|+
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 34556789999999999999988765 34779999999998887777777664 47999999999999999999999
Q ss_pred EEccC
Q 040758 759 RISTV 763 (788)
Q Consensus 759 vl~~g 763 (788)
-|-.|
T Consensus 554 DiGPg 558 (935)
T COG0178 554 DIGPG 558 (935)
T ss_pred eeCCC
Confidence 98655
No 462
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.49 E-value=1.2e-07 Score=113.32 Aligned_cols=28 Identities=43% Similarity=0.673 Sum_probs=23.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+++| ++|+||+|+||||+.+.+++...
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 55666 99999999999999999987543
No 463
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.47 E-value=4.2e-07 Score=103.80 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=34.1
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
++++.++.+++|+++++|||||+||||++..|++.+....|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 34556666778999999999999999999999988766555
No 464
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.47 E-value=0.00019 Score=73.95 Aligned_cols=154 Identities=17% Similarity=0.004 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 156 QLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 156 ~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 235 (788)
++.+.+.+.++.+.+.+..|++.|..||.+.+++... +..+.++.++..++...+.......-.+.+..+....+.
T Consensus 11 kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~~----~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~la~~vi~ 86 (237)
T PF13748_consen 11 KLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVWQ----ALMYAALVLLMWAIGAARRIYDTRVFSRIYAELAVPVIL 86 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhHHHHH
Confidence 5778888888999999999999999999998887422 223323332222233333322222212222222222111
Q ss_pred HHhhhhhHHHHhcCCCCCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSIIDNPDQRIVDD---LSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAI 312 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~~~~~~~Ri~~D---v~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i 312 (788)
+ |+.. ..++++++.- ...+.+++..-+..++.+++++++.+++++.++.|+.+.++....+..++
T Consensus 87 ---------~-qr~~--~~~~S~i~ARv~lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i 154 (237)
T PF13748_consen 87 ---------S-QRQQ--GLSVSTIAARVALSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLI 154 (237)
T ss_pred ---------H-HHHh--CCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2111 1122333333 34455566666778889999999999999999999998888777777777
Q ss_pred HHHHhhhhhhHhH
Q 040758 313 SIYLGKGLVTLNF 325 (788)
Q Consensus 313 ~~~~~~~l~~~~~ 325 (788)
...+.++..+++.
T Consensus 155 ~~~f~~~~~~L~~ 167 (237)
T PF13748_consen 155 LPRFARRNYRLYR 167 (237)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665543
No 465
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=2.6e-07 Score=103.09 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=56.5
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcch
Q 040758 690 SVLSLGEQQRLAFARLLLS---------KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTL 750 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~---------~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~ 750 (788)
..+|.||+++++||.+|+. +||||+||||+|.||+.....+.+.|.+.|.++++++|+++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~ 343 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDH 343 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhh
Confidence 4699999999999999999 999999999999999999999999997667899999998753
No 466
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.44 E-value=5.3e-07 Score=99.95 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEE
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
++++||-.+|+++++||+. |+++.....++ ...|.+++.+.|..+.....+|++.|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a-a~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA-AETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH-HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 3677888999999999997 88887665554 24689999999997765555665433
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.42 E-value=1.9e-07 Score=105.33 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=63.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
+..+++++ |+|.+||+++|+|+||||||||+++|+|+++++.+.+-..|.++.++. .. .......
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~---------ef-----~~~~l~~ 206 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVK---------EF-----IEHSLQA 206 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHH---------HH-----HHHHhhh
Confidence 45689999 999999999999999999999999999999998654433333333331 00 0000011
Q ss_pred cccCcceEEEEccccccCCC-CHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLG-SLRQQLI 618 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~ 618 (788)
....|..+++++|+...+.. ++.++..
T Consensus 207 ~gl~rsvvv~~~~d~s~~~rl~a~e~a~ 234 (434)
T PRK07196 207 AGMAKSVVVAAPADESPLMRIKATELCH 234 (434)
T ss_pred cccceEEEEEecCCCChhhhHHHHHHHH
Confidence 11234569999999877754 6666664
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.36 E-value=4.8e-06 Score=77.59 Aligned_cols=57 Identities=33% Similarity=0.264 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH-------H--HHhcCCEEEEEecC
Q 040758 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE-------Q--IEAAGITYISVGHR 747 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~-------~--L~~~g~TvI~IaHr 747 (788)
...+++.++..+++|-..+|.++++||+....+......... . ....+..+|.++|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 378888899999999988899999999999999998876653 1 12357888888883
No 469
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.36 E-value=1.7e-07 Score=95.87 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=26.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999986
No 470
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.34 E-value=1.7e-06 Score=90.93 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=33.7
Q ss_pred HHccCCCEEEEecCCCC------CCHHHHHHHHHHHHh----cCCEEEEEecCc
Q 040758 705 LLLSKPQIVLLDESTSA------LDEANEAHLYEQIEA----AGITYISVGHRR 748 (788)
Q Consensus 705 ALl~~p~iLiLDEpTSa------LD~~se~~i~~~L~~----~g~TvI~IaHr~ 748 (788)
+..++|+++|+| |+++ +|+.....+.+.|.+ .|.|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 335799999999 7654 688877777776643 599999999975
No 471
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=3e-06 Score=83.79 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhc-CCEEEEEccCC
Q 040758 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDF-HKRVLRISTVD 764 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~-~D~Ilvl~~g~ 764 (788)
.-|-||-=---+.|.+ ++.-|.|||||-|+|.+.-+-.+...|++ .|.-+|+.||.+=++.+ .-.|+.++.+.
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g 205 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESG 205 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCC
Confidence 3688887655566655 46789999999999999999888877764 68899999999876655 45889998764
No 472
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.30 E-value=8.6e-07 Score=90.32 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+++|+||||||||||.+.|.+++ ..|.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v 30 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVI 30 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEE
Confidence 48999999999999999999987 3444544
No 473
>PRK14079 recF recombination protein F; Provisional
Probab=98.29 E-value=1.5e-06 Score=96.59 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEE
Q 040758 690 SVLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.-+|+||++++++|+.|+ .+||+++||||||.||......+.+.|.+...++|..+ +....+|+++.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t---~~~~~~~~~~~~ 338 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGT---EAPPGAALTLRI 338 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcC---CCCCCCceEEEE
Confidence 458999999999999998 89999999999999999999999998865444444433 345678999999
Q ss_pred ccCCCC
Q 040758 761 STVDQN 766 (788)
Q Consensus 761 ~~g~~~ 766 (788)
++|..+
T Consensus 339 ~~~~~~ 344 (349)
T PRK14079 339 EAGVFT 344 (349)
T ss_pred eccEec
Confidence 987543
No 474
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.29 E-value=2.7e-06 Score=104.61 Aligned_cols=65 Identities=25% Similarity=0.236 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHHcc--CCCEEEEecC---CCCCCHHHHH-HHHHHHHhc-CCEEEEEecCcchhhcCCE
Q 040758 692 LSLGEQQRLAFARLLLS--KPQIVLLDES---TSALDEANEA-HLYEQIEAA-GITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 692 LSGGQrQRiaIARALl~--~p~iLiLDEp---TSaLD~~se~-~i~~~L~~~-g~TvI~IaHr~~~~~~~D~ 756 (788)
+|--+.....++++|-+ ++.++||||| ||.+|...-. .+.+.|.+. +.++|++||..++...+++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence 66666677777777765 8999999999 9999976643 466777665 6899999999777666553
No 475
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.28 E-value=1.7e-06 Score=107.78 Aligned_cols=78 Identities=27% Similarity=0.301 Sum_probs=66.4
Q ss_pred cCCCCCChhHHHHHHHHH------HHccC--CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCC
Q 040758 687 EWSSVLSLGEQQRLAFAR------LLLSK--PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHK 755 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIAR------ALl~~--p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D 755 (788)
....+|||||+=.++||- .+..+ =++|+|||||..||+++...+.+.|.+ .+++||||||+.++...+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 345789999998666554 44556 699999999999999999999988865 5899999999999999999
Q ss_pred EEEEEccCC
Q 040758 756 RVLRISTVD 764 (788)
Q Consensus 756 ~Ilvl~~g~ 764 (788)
+++.++..+
T Consensus 891 ~~i~V~k~~ 899 (908)
T COG0419 891 VRIRVKKDG 899 (908)
T ss_pred eEEEEEecC
Confidence 999998753
No 476
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.2e-06 Score=112.48 Aligned_cols=61 Identities=26% Similarity=0.429 Sum_probs=55.5
Q ss_pred CCCCCChhHHHHHH----HHHH--------HccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc
Q 040758 688 WSSVLSLGEQQRLA----FARL--------LLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR 748 (788)
Q Consensus 688 ~g~~LSGGQrQRia----IARA--------Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~ 748 (788)
....||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.+.|.++|++||++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccch
Confidence 45789999999997 6765 5589999999999999999999999999999999999999985
No 477
>PRK01889 GTPase RsgA; Reviewed
Probab=98.25 E-value=6.2e-07 Score=99.79 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=64.8
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR 594 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (788)
-++.+.-.+++|++++|+|+||+|||||++.|+|...+..|+|.+++..+... .
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t--------------------------t 237 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT--------------------------T 237 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch--------------------------h
Confidence 36667777889999999999999999999999999999999999854322211 1
Q ss_pred CcceEEEEccccccCCCCHHHHhcCCC
Q 040758 595 NSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 595 ~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
.++++++++|+.++++.....|+.+..
T Consensus 238 ~~~~l~~l~~~~~l~DtpG~~~~~l~~ 264 (356)
T PRK01889 238 THRELHPLPSGGLLIDTPGMRELQLWD 264 (356)
T ss_pred hhccEEEecCCCeecCCCchhhhcccC
Confidence 235699999999999887777776653
No 478
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.24 E-value=9.1e-06 Score=100.21 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHHHHccCCCEEEEecCCCCC-CHHHHHHHHHHHH---hcCCEEEEEecCcch
Q 040758 702 FARLLLSKPQIVLLDESTSAL-DEANEAHLYEQIE---AAGITYISVGHRRTL 750 (788)
Q Consensus 702 IARALl~~p~iLiLDEpTSaL-D~~se~~i~~~L~---~~g~TvI~IaHr~~~ 750 (788)
|+|++..+|+++++|||+++| |+...+.+.+.++ +.|.+++++||+++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 688999999999999999999 7888888777664 468999999999754
No 479
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.06 E-value=7.1e-06 Score=89.67 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=50.7
Q ss_pred EcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 507 ~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
.+.+ +..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.+..-|.+++++
T Consensus 52 ~l~t-Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev 110 (326)
T cd01136 52 VLPT-GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREV 110 (326)
T ss_pred EcCC-CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccH
Confidence 4443 45689999 99999999999999999999999999999999999887766655554
No 480
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.02 E-value=5.2e-06 Score=93.73 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=58.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
.++.++++..+.+ +..+++++ |++.+||+++|+|+||+|||||+++|+|..+++.|.+.+.|..+.++
T Consensus 129 ~~~r~~v~~~l~t-Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 129 AMVRQPITQPLMT-GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred ceeccCHhheeCC-Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 4777788877764 56799999 99999999999999999999999999999999999888766655544
No 481
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.02 E-value=5.8e-06 Score=95.84 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHH--HHHccCCCEEEEecCCCCCCHHHHHHHHHH---HHhcCCEEEEEecCcch----------hhcCC
Q 040758 691 VLSLGEQQRLAFA--RLLLSKPQIVLLDESTSALDEANEAHLYEQ---IEAAGITYISVGHRRTL----------YDFHK 755 (788)
Q Consensus 691 ~LSGGQrQRiaIA--RALl~~p~iLiLDEpTSaLD~~se~~i~~~---L~~~g~TvI~IaHr~~~----------~~~~D 755 (788)
.+|+|++|||.|+ .+|..+|+.. ....+.+.+. +++.|+|+|+++|+.+. .-.||
T Consensus 115 ~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laD 184 (484)
T TIGR02655 115 AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSD 184 (484)
T ss_pred HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeee
Confidence 4999999999999 6776665544 3444445544 45579999999998642 23589
Q ss_pred EEEEEc
Q 040758 756 RVLRIS 761 (788)
Q Consensus 756 ~Ilvl~ 761 (788)
.|+.|+
T Consensus 185 gVI~L~ 190 (484)
T TIGR02655 185 NVVILR 190 (484)
T ss_pred eEEEEE
Confidence 999887
No 482
>PRK08149 ATP synthase SpaL; Validated
Probab=98.00 E-value=7.3e-06 Score=92.46 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=43.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEEee
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR---GKITFYV 561 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~---G~I~~~~ 561 (788)
+..+++++ +++.+||+++|+|+||+|||||+++|++..+++. |.|-.++
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg 189 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERG 189 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCC
Confidence 45689999 9999999999999999999999999999999886 7776643
No 483
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.95 E-value=9.8e-06 Score=91.92 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=49.5
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ |++.+|++++|+|+||+|||||+++|+|..+|+.|.+...|..+.++
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev 186 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREV 186 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCH
Confidence 45689999 99999999999999999999999999999999999998866666554
No 484
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=97.95 E-value=0.0001 Score=82.21 Aligned_cols=86 Identities=26% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC-----CHHHHHHH-------------HHHH-HhcCCE
Q 040758 680 NSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL-----DEANEAHL-------------YEQI-EAAGIT 740 (788)
Q Consensus 680 ~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaL-----D~~se~~i-------------~~~L-~~~g~T 740 (788)
.|.||..---.+=||-.-|=-.|..||=..+++||+||=|||- |...++.| ...| ++.|.+
T Consensus 311 ~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvS 390 (448)
T PF09818_consen 311 GGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVS 390 (448)
T ss_pred CCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCce
Confidence 4555542122347999999999999999999999999999986 55555554 2233 336888
Q ss_pred EEEEecCc-chhhcCCEEEEEccCCC
Q 040758 741 YISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 741 vI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
+|+|+--. .....||+|++|++-+.
T Consensus 391 tIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 391 TILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred EEEEeccchhhHhhCCEEEEecCccc
Confidence 88887655 46788999999998754
No 485
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.95 E-value=0.055 Score=65.49 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 040758 257 QRIVDDLSSFTGTALSFS----LTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEA 332 (788)
Q Consensus 257 ~Ri~~Dv~~v~~~~~~~~----~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 332 (788)
+|-++|+..-........ ..++..+++++.+++++..+.+ ....+++.++..+.+...+.-......++..++..
T Consensus 247 ~r~~Ge~~sR~~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~-ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~ 325 (709)
T COG2274 247 KRSVGEIISRVRELEQIREFLTGSILTLIIDLLFALIFLAVMFL-YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLI 325 (709)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888766544333322 2344555555555444444433 23333333333333333333333333333333332
Q ss_pred HHHhH-HHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040758 333 DFRYG-LVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSG 408 (788)
Q Consensus 333 ~~~~~-~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 408 (788)
+.... -.-..|.+..|+.-.....| .++..+|++.+.+..+...+..+.......+..+++- +..++.+|++.
T Consensus 326 ~~~a~~~s~lvE~i~gi~tvK~~~~e-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~v~iL~~G~ 399 (709)
T COG2274 326 EESAEQQSFLVETIKGIETVKALAAE-PRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQ--LSSVLILWFGA 399 (709)
T ss_pred HHHHHHhhHHHHHHhhhHHHHHhhhh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 22211 13344444445555444454 3455666666666555544444443333332222222 22334566654
No 486
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.91 E-value=3.3e-05 Score=85.97 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++|..++|+||+||||||+++.|++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999999985
No 487
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=97.88 E-value=0.00013 Score=90.00 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=39.5
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
-+||.+.++..++|+|+||||||||++.|++......++|.+-+.+
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~ 483 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKD 483 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 3568888899999999999999999999999888888888875433
No 488
>PRK15494 era GTPase Era; Provisional
Probab=97.88 E-value=9.1e-06 Score=89.97 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=50.4
Q ss_pred CCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCC-------EEEEEcCCCCcHHHHHHHHhcC
Q 040758 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKE-------HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 494 ~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge-------~iaIvG~sGsGKSTLl~lL~gl 549 (788)
...|.+++++++|+|| ...+.++++++++++|+ .++|+|++|+|||||++.|.|-
T Consensus 14 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 14 EFKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hhCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567899999999999 46779999999999999 9999999999999999999875
No 489
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.87 E-value=1.2e-05 Score=91.09 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=44.9
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEeeccCccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFYVKDREET 567 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~~~~~~~i 567 (788)
-.+++++ |++.+||+++|+|+||||||||+++|+|..+ .+.|.|.+.|..++++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev 206 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV 206 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHH
Confidence 4578888 9999999999999999999999999999884 4456777666555555
No 490
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.85 E-value=6.4e-06 Score=85.82 Aligned_cols=39 Identities=28% Similarity=0.230 Sum_probs=29.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHh-cCCCCCCceEEEe
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMA-GLWSDGRGKITFY 560 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~-gl~~p~~G~I~~~ 560 (788)
=+++|+.++|.||+|||||||...++ ....+.++.+++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 48899999999999999999988654 2334555556663
No 491
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.85 E-value=1.5e-05 Score=89.91 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=49.3
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ +++.+||+++|+|+||+|||||+++|++..+++.|.|.+.|..+++.
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev 178 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREV 178 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHH
Confidence 45689999 99999999999999999999999999999999999998876665544
No 492
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.84 E-value=1.8e-05 Score=64.99 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=29.6
Q ss_pred eeeeeEEEeC-CCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 516 VRDLSLVINE-KEHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 516 L~~isl~i~~-Ge~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
+++-++++.+ |+.+.|.||||||||||+.++.=..-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3456677775 5799999999999999999987654443
No 493
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.84 E-value=1.5e-05 Score=91.85 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=54.1
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
++|++..|+ .+.+++++++.+..|+.++|+||||||||||++.|.|+.+|.+|++.+++..
T Consensus 187 ~~d~~~v~G--q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~ 247 (506)
T PRK09862 187 QHDLSDVIG--QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAA 247 (506)
T ss_pred ccCeEEEEC--cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecch
Confidence 457887774 4568999999999999999999999999999999999999999999985443
No 494
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.83 E-value=5.4e-05 Score=96.77 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=35.1
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEEe
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITFY 560 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~~ 560 (788)
=+++..+++++++|+|++|+|||||++.+.+ +.+..+|.++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 3466778899999999999999999999955 445568888873
No 495
>PRK09099 type III secretion system ATPase; Provisional
Probab=97.81 E-value=2.1e-05 Score=89.17 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=49.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ +++.+||+++|+|+||+|||||+++++|..+++.|.|.+.|..++++
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev 204 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREV 204 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHH
Confidence 45689999 99999999999999999999999999999999999998876655554
No 496
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=97.81 E-value=3.5e-05 Score=68.61 Aligned_cols=48 Identities=40% Similarity=0.512 Sum_probs=36.0
Q ss_pred CCCCChhHHHH-H------HHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 689 SSVLSLGEQQR-L------AFARLLLS------KPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 689 g~~LSGGQrQR-i------aIARALl~------~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+||||||. + |+|..+-. .|.+++|||||+.||+++.+.+.+.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35699999954 2 33333333 3799999999999999999999988863
No 497
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.80 E-value=4.5e-05 Score=73.84 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=33.0
Q ss_pred CCCCChhHHHHHHHHHH-----HccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 689 SSVLSLGEQQRLAFARL-----LLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 689 g~~LSGGQrQRiaIARA-----Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+|++++++...... ....|+++ |||++|.....++.+.|.+
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHH
Confidence 44578898887765554 24556766 9999999999999888754
No 498
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=9.8e-05 Score=88.45 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=35.5
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
++++.++.+++|+++++|||||+||||++..|++.+....|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 56777888888999999999999999999999998765544
No 499
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.78 E-value=2e-05 Score=79.64 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
|+.++|+||||||||||+++|++...+ .+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~ 32 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLV 32 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEE
Confidence 789999999999999999999998876 4554
No 500
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.76 E-value=2.4e-05 Score=89.05 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ |++.+||+++|+|+||+|||||+++|+|..+++.|.+...|..++++
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev 204 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREV 204 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHH
Confidence 45689999 99999999999999999999999999999999999887766666554
Done!