Query 040758
Match_columns 788
No_of_seqs 465 out of 2499
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 18:40:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040758.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040758hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qf4_A ABC transporter, ATP-bi 100.0 1.9E-70 6.5E-75 642.8 58.0 533 134-765 11-555 (587)
2 4f4c_A Multidrug resistance pr 100.0 6.2E-71 2.1E-75 697.6 56.8 449 234-765 167-630 (1321)
3 3qf4_B Uncharacterized ABC tra 100.0 3E-70 1E-74 642.7 56.5 535 130-765 21-567 (598)
4 3b5x_A Lipid A export ATP-bind 100.0 4.6E-69 1.6E-73 631.2 65.7 535 131-765 10-556 (582)
5 4a82_A Cystic fibrosis transme 100.0 3E-70 1E-74 640.5 54.6 537 134-765 2-553 (578)
6 3b60_A Lipid A export ATP-bind 100.0 7.2E-69 2.5E-73 629.5 61.8 535 131-765 10-556 (582)
7 2yl4_A ATP-binding cassette SU 100.0 4.2E-68 1.4E-72 624.6 62.2 538 132-765 5-559 (595)
8 4f4c_A Multidrug resistance pr 100.0 8.5E-69 2.9E-73 678.2 49.1 536 133-765 739-1293(1321)
9 3g5u_A MCG1178, multidrug resi 100.0 1.8E-65 6.1E-70 646.4 51.2 448 234-765 139-602 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 3.8E-61 1.3E-65 607.0 51.5 540 134-765 693-1247(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.3E-51 4.3E-56 444.5 20.6 212 496-765 51-266 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 1.8E-47 6.2E-52 401.2 22.8 211 498-765 7-221 (247)
13 1mv5_A LMRA, multidrug resista 100.0 6.3E-47 2.2E-51 396.3 19.3 212 498-766 1-216 (243)
14 2ixe_A Antigen peptide transpo 100.0 4.3E-46 1.5E-50 395.9 21.7 214 496-765 14-234 (271)
15 2ghi_A Transport protein; mult 100.0 6.4E-46 2.2E-50 392.3 21.7 211 497-765 16-231 (260)
16 3tif_A Uncharacterized ABC tra 100.0 1.1E-45 3.7E-50 384.9 18.7 215 498-765 1-223 (235)
17 3tui_C Methionine import ATP-b 100.0 4.1E-45 1.4E-49 400.7 19.4 213 496-765 22-242 (366)
18 3gfo_A Cobalt import ATP-bindi 100.0 7.1E-45 2.4E-49 386.8 20.4 209 498-765 7-222 (275)
19 3gd7_A Fusion complex of cysti 100.0 5.6E-45 1.9E-49 404.5 19.9 211 496-765 17-231 (390)
20 2pze_A Cystic fibrosis transme 100.0 1.7E-44 5.9E-49 374.5 22.1 198 497-765 5-207 (229)
21 2pcj_A ABC transporter, lipopr 100.0 9.7E-45 3.3E-49 375.1 18.4 209 498-765 4-217 (224)
22 2cbz_A Multidrug resistance-as 100.0 2.8E-44 9.7E-49 374.7 21.0 197 498-765 3-206 (237)
23 3fvq_A Fe(3+) IONS import ATP- 100.0 3.4E-44 1.2E-48 393.2 22.3 208 498-765 4-217 (359)
24 1ji0_A ABC transporter; ATP bi 100.0 3.4E-44 1.2E-48 374.9 19.9 206 498-765 6-217 (240)
25 1g6h_A High-affinity branched- 100.0 2.9E-44 9.8E-49 379.2 18.8 220 498-765 7-231 (257)
26 4g1u_C Hemin import ATP-bindin 100.0 3.4E-44 1.2E-48 380.2 19.1 205 497-765 10-226 (266)
27 2olj_A Amino acid ABC transpor 100.0 3.1E-44 1.1E-48 379.6 17.7 209 498-765 24-237 (263)
28 3rlf_A Maltose/maltodextrin im 100.0 5.7E-44 1.9E-48 393.9 20.3 204 498-765 3-212 (381)
29 2yz2_A Putative ABC transporte 100.0 2.6E-43 9E-48 373.6 21.7 204 498-765 2-216 (266)
30 1b0u_A Histidine permease; ABC 100.0 5.7E-44 2E-48 377.8 16.0 220 498-765 6-231 (262)
31 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-43 4.9E-48 373.3 18.9 207 496-765 13-224 (256)
32 2yyz_A Sugar ABC transporter, 100.0 3.2E-43 1.1E-47 386.4 20.7 204 498-765 3-212 (359)
33 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-43 5.7E-48 377.3 17.6 211 497-765 20-241 (279)
34 1z47_A CYSA, putative ABC-tran 100.0 4.5E-43 1.5E-47 384.4 20.2 207 496-765 12-224 (355)
35 2onk_A Molybdate/tungstate ABC 100.0 4.6E-43 1.6E-47 366.1 18.5 198 499-765 2-205 (240)
36 1v43_A Sugar-binding transport 100.0 1E-42 3.5E-47 384.2 21.9 204 498-765 11-220 (372)
37 2it1_A 362AA long hypothetical 100.0 5.9E-43 2E-47 384.7 19.6 204 498-765 3-212 (362)
38 3d31_A Sulfate/molybdate ABC t 100.0 4.7E-43 1.6E-47 383.8 18.2 200 498-765 1-206 (348)
39 1oxx_K GLCV, glucose, ABC tran 100.0 6.7E-43 2.3E-47 383.8 18.9 209 498-765 3-219 (353)
40 2nq2_C Hypothetical ABC transp 100.0 3.8E-42 1.3E-46 362.0 21.8 197 498-764 4-206 (253)
41 1g29_1 MALK, maltose transport 100.0 1.6E-42 5.4E-47 383.2 19.5 210 498-765 3-218 (372)
42 2qi9_C Vitamin B12 import ATP- 100.0 2.4E-42 8.2E-47 362.5 19.0 196 498-765 4-211 (249)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-42 3.7E-47 365.7 16.1 210 498-765 3-222 (250)
44 2zu0_C Probable ATP-dependent 100.0 6.4E-42 2.2E-46 363.1 18.2 215 497-765 19-243 (267)
45 1sgw_A Putative ABC transporte 100.0 2.3E-41 7.7E-46 347.1 18.1 194 497-761 9-207 (214)
46 2pjz_A Hypothetical protein ST 100.0 2.9E-41 9.9E-46 356.9 19.2 198 498-765 1-204 (263)
47 2bbs_A Cystic fibrosis transme 100.0 4.4E-41 1.5E-45 360.2 17.7 193 497-765 39-236 (290)
48 3ozx_A RNAse L inhibitor; ATP 100.0 2.1E-34 7E-39 333.1 18.7 189 497-763 268-462 (538)
49 2iw3_A Elongation factor 3A; a 100.0 4.7E-34 1.6E-38 345.3 18.5 235 497-773 670-984 (986)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 4E-34 1.4E-38 331.3 16.1 186 497-762 286-477 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 6.7E-34 2.3E-38 332.9 17.8 186 497-762 356-547 (607)
52 3bk7_A ABC transporter ATP-bin 100.0 9.2E-34 3.1E-38 331.8 14.0 206 498-763 83-304 (607)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 7.4E-34 2.5E-38 329.1 12.7 205 499-763 21-234 (538)
54 3j16_B RLI1P; ribosome recycli 100.0 2.2E-32 7.6E-37 319.6 16.2 183 502-762 350-543 (608)
55 2iw3_A Elongation factor 3A; a 100.0 7.1E-31 2.4E-35 317.6 20.2 186 497-765 434-623 (986)
56 3ux8_A Excinuclease ABC, A sub 100.0 2.1E-31 7.3E-36 317.0 13.3 201 513-761 31-277 (670)
57 3ozx_A RNAse L inhibitor; ATP 100.0 5.4E-31 1.8E-35 304.5 10.4 204 503-764 4-214 (538)
58 3j16_B RLI1P; ribosome recycli 100.0 8.1E-31 2.8E-35 306.4 11.7 206 503-764 82-298 (608)
59 3ux8_A Excinuclease ABC, A sub 100.0 9.6E-30 3.3E-34 302.8 9.6 91 662-760 522-618 (670)
60 2npi_A Protein CLP1; CLP1-PCF1 100.0 7.3E-31 2.5E-35 297.8 -5.4 188 496-766 116-329 (460)
61 2v9p_A Replication protein E1; 99.9 3.8E-31 1.3E-35 284.2 -11.8 156 497-766 100-256 (305)
62 3pih_A Uvrabc system protein A 99.9 5.9E-27 2E-31 283.2 19.0 93 661-761 783-881 (916)
63 4aby_A DNA repair protein RECN 99.9 1.7E-27 5.8E-32 267.2 12.4 70 692-761 296-369 (415)
64 2vf7_A UVRA2, excinuclease ABC 99.9 2.1E-26 7.4E-31 276.2 14.9 93 661-761 708-806 (842)
65 2r6f_A Excinuclease ABC subuni 99.9 4.1E-26 1.4E-30 274.1 15.2 92 662-761 824-921 (972)
66 2ygr_A Uvrabc system protein A 99.9 1.4E-25 4.7E-30 270.5 16.8 92 662-761 842-939 (993)
67 3b85_A Phosphate starvation-in 99.9 6.9E-27 2.3E-31 238.6 -4.1 157 512-764 12-171 (208)
68 4gp7_A Metallophosphoesterase; 99.9 6.1E-26 2.1E-30 224.3 2.1 69 689-757 81-168 (171)
69 1e69_A Chromosome segregation 99.9 1.3E-24 4.4E-29 236.4 12.1 77 688-764 216-300 (322)
70 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.8E-23 9.6E-28 229.6 14.5 79 687-765 275-362 (365)
71 1z6g_A Guanylate kinase; struc 99.9 2E-26 6.9E-31 236.8 -10.8 173 514-761 11-192 (218)
72 1ye8_A Protein THEP1, hypothet 99.9 8.5E-24 2.9E-28 210.5 4.4 76 687-762 72-162 (178)
73 1tq4_A IIGP1, interferon-induc 99.9 5.2E-25 1.8E-29 245.9 -7.5 166 513-758 36-248 (413)
74 2pt7_A CAG-ALFA; ATPase, prote 99.9 5.9E-24 2E-28 231.8 0.6 142 501-765 151-292 (330)
75 3aez_A Pantothenate kinase; tr 99.8 2.5E-23 8.6E-28 225.0 -5.4 182 495-764 40-246 (312)
76 2dpy_A FLII, flagellum-specifi 99.8 2.7E-23 9.4E-28 234.4 -6.1 190 497-765 130-333 (438)
77 3b9q_A Chloroplast SRP recepto 99.8 8.2E-23 2.8E-27 220.0 -2.2 178 516-765 90-284 (302)
78 3sop_A Neuronal-specific septi 99.8 8.6E-22 2.9E-26 208.8 1.9 148 528-750 4-152 (270)
79 2og2_A Putative signal recogni 99.8 6.9E-22 2.3E-26 217.0 -1.1 179 517-765 148-341 (359)
80 2o5v_A DNA replication and rep 99.8 3E-19 1E-23 196.3 14.3 72 691-765 265-345 (359)
81 1znw_A Guanylate kinase, GMP k 99.8 1.9E-22 6.4E-27 205.1 -10.8 182 512-761 8-202 (207)
82 2eyu_A Twitching motility prot 99.8 8.9E-21 3E-25 200.1 1.1 141 499-762 6-147 (261)
83 3qkt_A DNA double-strand break 99.8 9.1E-19 3.1E-23 191.6 12.8 76 687-762 244-328 (339)
84 1ewq_A DNA mismatch repair pro 99.8 4.9E-19 1.7E-23 211.6 7.2 146 496-754 548-704 (765)
85 2obl_A ESCN; ATPase, hydrolase 99.7 3.7E-20 1.3E-24 202.9 -2.6 189 497-765 44-244 (347)
86 2i3b_A HCR-ntpase, human cance 99.7 1.5E-20 5.1E-25 188.9 -5.4 141 526-749 1-150 (189)
87 1tf7_A KAIC; homohexamer, hexa 99.7 3.9E-19 1.3E-23 205.7 5.6 166 499-764 258-444 (525)
88 1cr0_A DNA primase/helicase; R 99.7 4.5E-19 1.6E-23 189.8 4.1 179 513-765 22-237 (296)
89 4a74_A DNA repair and recombin 99.7 7.9E-19 2.7E-23 179.6 4.2 145 522-764 21-201 (231)
90 2o8b_B DNA mismatch repair pro 99.7 1.1E-18 3.9E-23 214.4 5.3 159 497-761 749-926 (1022)
91 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 1.3E-17 4.4E-22 160.8 10.6 76 687-762 53-137 (148)
92 1tf7_A KAIC; homohexamer, hexa 99.7 9.3E-19 3.2E-23 202.5 2.7 177 501-765 15-212 (525)
93 2jeo_A Uridine-cytidine kinase 99.7 1E-18 3.6E-23 182.2 0.5 153 512-747 11-164 (245)
94 2ehv_A Hypothetical protein PH 99.7 1.2E-18 4.2E-23 180.5 1.0 180 498-762 6-207 (251)
95 3thx_A DNA mismatch repair pro 99.7 2.5E-17 8.4E-22 200.3 11.9 74 692-765 722-802 (934)
96 3asz_A Uridine kinase; cytidin 99.7 9.8E-20 3.4E-24 184.8 -7.8 141 523-748 3-161 (211)
97 2ewv_A Twitching motility prot 99.7 6.2E-20 2.1E-24 203.3 -12.5 194 514-749 126-352 (372)
98 3jvv_A Twitching mobility prot 99.7 1.8E-17 6.1E-22 182.1 4.1 147 502-763 92-246 (356)
99 3szr_A Interferon-induced GTP- 99.7 1.7E-18 5.9E-23 203.3 -4.6 183 498-767 10-228 (608)
100 3thx_B DNA mismatch repair pro 99.7 1.1E-16 3.8E-21 194.1 10.3 66 690-756 734-804 (918)
101 1rj9_A FTSY, signal recognitio 99.7 3E-17 1E-21 176.7 4.5 171 525-765 101-285 (304)
102 2gza_A Type IV secretion syste 99.7 1.1E-17 3.9E-22 184.4 1.1 154 500-764 137-303 (361)
103 1lw7_A Transcriptional regulat 99.6 1.5E-19 5.2E-24 199.7 -14.6 85 515-621 157-248 (365)
104 2qnr_A Septin-2, protein NEDD5 99.6 1.6E-17 5.6E-22 178.7 1.3 163 502-749 2-168 (301)
105 1pui_A ENGB, probable GTP-bind 99.6 3.5E-18 1.2E-22 172.4 -4.6 177 498-736 3-195 (210)
106 2qag_C Septin-7; cell cycle, c 99.6 4.2E-17 1.4E-21 182.6 2.9 165 497-750 10-179 (418)
107 1lvg_A Guanylate kinase, GMP k 99.6 2.1E-19 7.2E-24 181.6 -14.4 156 524-762 2-173 (198)
108 1pzn_A RAD51, DNA repair and r 99.6 7.3E-17 2.5E-21 177.1 3.6 139 514-749 118-287 (349)
109 3kta_B Chromosome segregation 99.6 9.8E-16 3.4E-20 151.4 10.0 75 687-761 60-140 (173)
110 3pih_A Uvrabc system protein A 99.6 1.1E-15 3.7E-20 185.1 10.4 90 663-760 444-538 (916)
111 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.8E-15 6.2E-20 154.4 10.2 167 512-763 8-192 (235)
112 2f1r_A Molybdopterin-guanine d 99.6 3E-18 1E-22 169.3 -11.6 37 527-563 3-42 (171)
113 2ygr_A Uvrabc system protein A 99.6 4.8E-15 1.6E-19 179.1 11.5 89 665-761 503-596 (993)
114 2r6f_A Excinuclease ABC subuni 99.6 3.7E-15 1.3E-19 179.5 10.4 89 665-761 486-579 (972)
115 1wb9_A DNA mismatch repair pro 99.5 1.2E-15 4.1E-20 183.4 4.5 73 691-764 669-746 (800)
116 2vf7_A UVRA2, excinuclease ABC 99.5 9.2E-15 3.2E-19 175.7 10.9 77 686-762 374-455 (842)
117 4ad8_A DNA repair protein RECN 99.5 2.1E-14 7E-19 165.8 8.6 76 689-764 394-474 (517)
118 1s96_A Guanylate kinase, GMP k 99.5 3.2E-15 1.1E-19 153.4 1.4 128 520-752 10-144 (219)
119 2cvh_A DNA repair and recombin 99.5 1.5E-14 5.1E-19 146.8 6.2 72 692-763 85-185 (220)
120 1nlf_A Regulatory protein REPA 99.5 8.5E-14 2.9E-18 147.7 11.5 149 522-750 26-183 (279)
121 1zp6_A Hypothetical protein AT 99.5 2.9E-15 1E-19 149.0 0.1 164 522-758 5-170 (191)
122 2qag_B Septin-6, protein NEDD5 99.5 1E-14 3.5E-19 162.9 3.8 189 498-747 16-218 (427)
123 1odf_A YGR205W, hypothetical 3 99.5 1.1E-15 3.8E-20 163.4 -5.2 131 525-726 30-169 (290)
124 1n0w_A DNA repair protein RAD5 99.4 2.6E-13 9E-18 139.7 7.4 40 522-561 20-66 (243)
125 1nij_A Hypothetical protein YJ 99.4 5.7E-15 2E-19 160.0 -5.6 169 527-748 5-189 (318)
126 1htw_A HI0065; nucleotide-bind 99.4 5.9E-15 2E-19 143.8 -5.2 89 501-620 10-99 (158)
127 2qm8_A GTPase/ATPase; G protei 99.4 3.8E-15 1.3E-19 162.7 -7.8 92 498-610 29-120 (337)
128 2yhs_A FTSY, cell division pro 99.4 8.7E-14 3E-18 157.3 2.1 88 516-620 283-371 (503)
129 3auy_A DNA double-strand break 99.4 1.3E-12 4.4E-17 144.5 10.7 75 689-763 278-361 (371)
130 3c8u_A Fructokinase; YP_612366 99.3 1.3E-14 4.4E-19 147.3 -5.9 149 523-748 19-183 (208)
131 1w1w_A Structural maintenance 99.3 1.8E-12 6.3E-17 146.0 9.2 73 690-762 332-411 (430)
132 3e70_C DPA, signal recognition 99.3 2.3E-13 7.8E-18 147.9 0.2 170 522-765 125-306 (328)
133 2rcn_A Probable GTPase ENGC; Y 99.3 9.2E-13 3.1E-17 144.2 4.8 75 515-617 205-282 (358)
134 1p9r_A General secretion pathw 99.3 2.7E-14 9.3E-19 159.9 -9.8 62 498-563 143-204 (418)
135 3lda_A DNA repair protein RAD5 99.3 3.1E-12 1E-16 142.5 6.5 40 522-561 174-220 (400)
136 2oap_1 GSPE-2, type II secreti 99.2 5.1E-14 1.7E-18 161.7 -10.6 193 513-755 247-458 (511)
137 3ec2_A DNA replication protein 99.2 4.9E-12 1.7E-16 124.8 3.5 42 707-748 98-143 (180)
138 2bbw_A Adenylate kinase 4, AK4 99.2 1.6E-13 5.6E-18 142.7 -7.9 36 525-560 26-64 (246)
139 1sxj_E Activator 1 40 kDa subu 99.2 2.4E-11 8.3E-16 132.4 8.9 136 527-749 37-175 (354)
140 2bdt_A BH3686; alpha-beta prot 99.2 5.1E-14 1.8E-18 140.1 -12.9 67 693-765 96-173 (189)
141 1udx_A The GTP-binding protein 99.1 4.5E-11 1.5E-15 133.7 7.5 36 516-551 147-182 (416)
142 1sq5_A Pantothenate kinase; P- 99.1 2.5E-13 8.7E-18 146.4 -12.0 60 496-559 35-115 (308)
143 2kjq_A DNAA-related protein; s 99.1 1.2E-10 4.2E-15 112.0 7.1 35 515-555 30-64 (149)
144 2x8a_A Nuclear valosin-contain 99.0 9.9E-13 3.4E-17 139.4 -10.5 146 513-736 33-192 (274)
145 2yv5_A YJEQ protein; hydrolase 99.0 1.1E-10 3.7E-15 125.5 4.6 132 521-704 160-300 (302)
146 1ls1_A Signal recognition part 99.0 3.4E-10 1.2E-14 121.2 8.1 56 499-560 77-132 (295)
147 1vma_A Cell division protein F 99.0 1.9E-10 6.4E-15 123.7 5.1 43 518-560 96-138 (306)
148 3euj_A Chromosome partition pr 98.9 6.4E-10 2.2E-14 126.1 5.9 61 500-565 8-68 (483)
149 1u0l_A Probable GTPase ENGC; p 98.9 7.3E-10 2.5E-14 118.9 4.2 39 521-559 164-202 (301)
150 1in4_A RUVB, holliday junction 98.9 9E-12 3.1E-16 135.7 -11.6 93 499-617 19-122 (334)
151 3k1j_A LON protease, ATP-depen 98.8 3.8E-10 1.3E-14 132.6 0.0 158 512-736 46-227 (604)
152 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 9.7E-11 3.3E-15 129.9 -8.2 62 709-773 139-209 (392)
153 3tr0_A Guanylate kinase, GMP k 98.7 1.2E-09 4.1E-14 109.4 0.1 72 520-618 1-73 (205)
154 2dr3_A UPF0273 protein PH0284; 98.7 8.6E-08 2.9E-12 98.3 13.0 65 698-762 115-196 (247)
155 2px0_A Flagellar biosynthesis 98.7 2.7E-08 9.3E-13 106.4 8.3 35 524-558 103-138 (296)
156 1qhl_A Protein (cell division 98.7 8.4E-10 2.9E-14 113.6 -4.0 56 498-563 9-64 (227)
157 2ius_A DNA translocase FTSK; n 98.6 4.9E-09 1.7E-13 119.7 1.4 46 518-563 159-206 (512)
158 1t9h_A YLOQ, probable GTPase E 98.6 7.8E-09 2.7E-13 111.0 1.5 76 521-618 168-248 (307)
159 1iy2_A ATP-dependent metallopr 98.6 9.2E-11 3.2E-15 124.1 -13.5 57 499-561 50-106 (278)
160 1oix_A RAS-related protein RAB 98.6 4.4E-09 1.5E-13 104.5 -0.7 36 699-736 153-188 (191)
161 3lnc_A Guanylate kinase, GMP k 98.6 1.5E-08 5E-13 104.0 2.5 39 514-552 15-54 (231)
162 1ixz_A ATP-dependent metallopr 98.5 1.7E-10 5.9E-15 120.1 -14.0 57 499-561 26-82 (254)
163 2zr9_A Protein RECA, recombina 98.5 1.1E-07 3.8E-12 104.0 7.6 38 522-559 57-94 (349)
164 4e22_A Cytidylate kinase; P-lo 98.5 4.8E-09 1.6E-13 109.5 -3.5 80 515-619 19-115 (252)
165 3nwj_A ATSK2; P loop, shikimat 98.5 1.6E-08 5.6E-13 105.5 -0.9 53 497-550 16-72 (250)
166 2r6a_A DNAB helicase, replicat 98.4 2.9E-07 9.9E-12 104.3 8.7 48 512-559 189-237 (454)
167 2dy1_A Elongation factor G; tr 98.3 7.7E-08 2.6E-12 114.0 0.8 74 520-617 3-78 (665)
168 3ney_A 55 kDa erythrocyte memb 98.3 2.3E-08 7.9E-13 100.5 -3.7 30 522-551 15-44 (197)
169 2f9l_A RAB11B, member RAS onco 98.3 1.9E-07 6.4E-12 93.0 1.9 34 700-735 130-163 (199)
170 1cke_A CK, MSSA, protein (cyti 98.3 8.1E-09 2.8E-13 105.1 -8.6 34 526-559 5-41 (227)
171 1jjv_A Dephospho-COA kinase; P 98.2 6.7E-07 2.3E-11 89.6 5.0 70 692-763 60-133 (206)
172 2ce7_A Cell division protein F 98.2 2.3E-06 7.8E-11 97.2 9.0 68 694-761 93-184 (476)
173 3kta_A Chromosome segregation 98.2 1.3E-06 4.6E-11 85.5 5.5 41 517-558 18-58 (182)
174 3uie_A Adenylyl-sulfate kinase 98.2 1.3E-07 4.5E-12 94.7 -1.9 49 512-561 11-61 (200)
175 1zu4_A FTSY; GTPase, signal re 98.2 1.2E-06 4.3E-11 94.5 5.4 49 515-563 94-142 (320)
176 2e87_A Hypothetical protein PH 98.1 4.7E-06 1.6E-10 91.2 9.7 59 690-749 230-293 (357)
177 2j41_A Guanylate kinase; GMP, 98.1 9.5E-07 3.2E-11 88.1 3.7 35 521-555 1-35 (207)
178 3ice_A Transcription terminati 98.1 3.5E-07 1.2E-11 100.0 0.3 56 494-550 129-198 (422)
179 3a00_A Guanylate kinase, GMP k 98.1 7.3E-07 2.5E-11 88.2 2.3 31 526-556 1-31 (186)
180 3t34_A Dynamin-related protein 98.1 5.9E-06 2E-10 90.5 9.6 43 513-558 24-68 (360)
181 2qtf_A Protein HFLX, GTP-bindi 98.1 8.6E-07 2.9E-11 97.5 2.6 45 688-736 301-350 (364)
182 3vaa_A Shikimate kinase, SK; s 98.1 1.2E-06 4.1E-11 87.6 3.3 39 512-550 11-49 (199)
183 2qt1_A Nicotinamide riboside k 98.1 4.5E-06 1.6E-10 83.6 7.2 32 520-551 15-46 (207)
184 1kgd_A CASK, peripheral plasma 98.0 1.6E-06 5.3E-11 85.4 2.3 36 524-559 3-39 (180)
185 4eun_A Thermoresistant glucoki 98.0 2.3E-06 7.8E-11 85.6 3.1 42 516-561 19-60 (200)
186 3hr8_A Protein RECA; alpha and 98.0 6.7E-06 2.3E-10 89.9 6.8 38 522-559 57-94 (356)
187 4a1f_A DNAB helicase, replicat 97.9 2.2E-05 7.5E-10 85.2 8.9 36 514-549 34-69 (338)
188 2dhr_A FTSH; AAA+ protein, hex 97.9 2.6E-07 9E-12 105.5 -7.4 57 499-561 41-97 (499)
189 1rz3_A Hypothetical protein rb 97.8 5.2E-06 1.8E-10 83.2 2.2 41 523-563 19-59 (201)
190 3tqc_A Pantothenate kinase; bi 97.8 9.9E-07 3.4E-11 95.2 -3.4 59 504-564 66-132 (321)
191 2xau_A PRE-mRNA-splicing facto 97.8 1.2E-05 4.2E-10 96.8 5.6 66 690-755 189-260 (773)
192 2vp4_A Deoxynucleoside kinase; 97.8 6.8E-06 2.3E-10 84.1 2.8 39 521-563 15-53 (230)
193 3tau_A Guanylate kinase, GMP k 97.8 1.2E-05 4.1E-10 81.0 3.8 29 524-552 6-34 (208)
194 2ffh_A Protein (FFH); SRP54, s 97.8 2.8E-05 9.5E-10 87.0 7.1 55 501-561 79-133 (425)
195 1svm_A Large T antigen; AAA+ f 97.7 6E-06 2.1E-10 91.1 0.5 43 514-559 157-199 (377)
196 1knq_A Gluconate kinase; ALFA/ 97.6 1.6E-05 5.3E-10 77.3 2.6 34 524-561 6-39 (175)
197 1v5w_A DMC1, meiotic recombina 97.6 3.7E-05 1.3E-09 83.7 5.6 28 522-549 118-145 (343)
198 3lxx_A GTPase IMAP family memb 97.6 0.0002 6.7E-09 73.3 10.2 30 528-557 31-60 (239)
199 3kl4_A SRP54, signal recogniti 97.6 0.00013 4.5E-09 81.6 9.5 35 525-559 96-130 (433)
200 1fnn_A CDC6P, cell division co 97.6 0.00026 8.7E-09 77.2 11.5 42 708-750 124-171 (389)
201 3cr8_A Sulfate adenylyltranfer 97.6 1.1E-05 3.9E-10 93.1 0.6 42 520-561 363-406 (552)
202 1w1w_A Structural maintenance 97.6 2.7E-05 9.1E-10 87.4 3.5 51 498-556 6-56 (430)
203 3bh0_A DNAB-like replicative h 97.5 0.0001 3.4E-09 79.3 7.4 37 512-548 54-90 (315)
204 2z43_A DNA repair and recombin 97.5 0.00029 1E-08 75.9 10.8 28 522-549 103-130 (324)
205 3b9p_A CG5977-PA, isoform A; A 97.5 0.0003 1E-08 74.2 10.5 69 693-761 97-187 (297)
206 2qby_A CDC6 homolog 1, cell di 97.4 9.3E-05 3.2E-09 80.4 4.9 29 524-552 43-71 (386)
207 2p67_A LAO/AO transport system 97.4 2.2E-05 7.6E-10 85.4 -0.1 50 513-562 43-92 (341)
208 1kag_A SKI, shikimate kinase I 97.4 5.5E-05 1.9E-09 73.1 2.7 32 525-560 3-34 (173)
209 2z4s_A Chromosomal replication 97.2 0.00021 7E-09 80.5 5.6 41 708-748 193-237 (440)
210 1ypw_A Transitional endoplasmi 97.2 0.00035 1.2E-08 84.5 7.9 32 521-552 233-264 (806)
211 2pez_A Bifunctional 3'-phospho 97.2 7.9E-05 2.7E-09 72.7 1.9 36 524-560 3-40 (179)
212 4eaq_A DTMP kinase, thymidylat 97.2 0.00012 4.1E-09 75.0 2.8 43 516-559 13-58 (229)
213 2www_A Methylmalonic aciduria 97.2 0.0001 3.5E-09 80.4 2.3 40 524-563 72-111 (349)
214 1f6b_A SAR1; gtpases, N-termin 97.2 8.9E-05 3E-09 73.6 1.2 42 505-548 6-47 (198)
215 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.0002 6.9E-09 68.3 3.6 30 517-547 15-44 (149)
216 4fcw_A Chaperone protein CLPB; 97.1 0.00074 2.5E-08 71.4 7.7 33 526-558 47-79 (311)
217 4dcu_A GTP-binding protein ENG 97.1 0.00055 1.9E-08 77.3 6.9 59 693-751 86-144 (456)
218 1m7g_A Adenylylsulfate kinase; 97.1 7.4E-05 2.5E-09 75.1 -0.3 40 521-560 20-61 (211)
219 3cf0_A Transitional endoplasmi 96.9 0.003 1E-07 67.1 10.5 30 521-550 44-73 (301)
220 3m6a_A ATP-dependent protease 96.9 0.00013 4.4E-09 84.4 -0.6 57 501-560 86-142 (543)
221 1l8q_A Chromosomal replication 96.9 0.00092 3.1E-08 71.6 6.1 28 525-552 36-63 (324)
222 1j8m_F SRP54, signal recogniti 96.9 0.00017 5.9E-09 76.9 0.3 44 517-561 89-133 (297)
223 2qag_A Septin-2, protein NEDD5 96.9 0.00015 5.1E-09 79.5 -0.2 54 496-557 15-68 (361)
224 3lxw_A GTPase IMAP family memb 96.9 0.0018 6.2E-08 66.8 8.0 57 693-750 86-151 (247)
225 1y63_A LMAJ004144AAA protein; 96.9 0.00045 1.5E-08 67.8 3.1 32 518-549 2-33 (184)
226 2qor_A Guanylate kinase; phosp 96.8 0.00038 1.3E-08 69.5 2.4 30 522-551 8-37 (204)
227 2b8t_A Thymidine kinase; deoxy 96.8 0.0016 5.5E-08 66.4 6.9 51 709-761 89-150 (223)
228 4ad8_A DNA repair protein RECN 96.8 0.00029 9.8E-09 81.0 1.2 34 515-549 50-83 (517)
229 1m2o_B GTP-binding protein SAR 96.8 0.00073 2.5E-08 66.3 3.9 34 514-548 12-45 (190)
230 2yvu_A Probable adenylyl-sulfa 96.7 0.00041 1.4E-08 67.9 1.8 37 523-559 10-46 (186)
231 2gj8_A MNME, tRNA modification 96.7 0.00068 2.3E-08 65.5 3.2 27 524-550 2-28 (172)
232 1u94_A RECA protein, recombina 96.6 0.0037 1.2E-07 68.3 8.6 36 513-549 48-86 (356)
233 3h4m_A Proteasome-activating n 96.6 0.0022 7.4E-08 67.0 6.5 28 523-550 48-75 (285)
234 2q6t_A DNAB replication FORK h 96.6 0.0043 1.5E-07 69.7 9.3 37 514-550 188-224 (444)
235 3qks_A DNA double-strand break 96.6 0.00096 3.3E-08 66.9 3.6 29 518-547 16-44 (203)
236 1njg_A DNA polymerase III subu 96.6 0.00066 2.3E-08 67.8 2.2 41 708-749 125-167 (250)
237 4ag6_A VIRB4 ATPase, type IV s 96.6 0.001 3.5E-08 73.3 3.7 55 506-561 13-70 (392)
238 2zej_A Dardarin, leucine-rich 96.5 0.0012 4.2E-08 64.2 3.4 26 528-553 4-29 (184)
239 2if2_A Dephospho-COA kinase; a 96.5 0.0011 3.7E-08 65.8 2.9 22 528-549 3-24 (204)
240 2ohf_A Protein OLA1, GTP-bindi 96.5 0.0011 3.9E-08 73.1 3.3 39 522-560 18-67 (396)
241 1mky_A Probable GTP-binding pr 96.5 0.0015 5E-08 73.4 4.3 35 527-561 181-227 (439)
242 2ewv_A Twitching motility prot 96.4 0.0009 3.1E-08 73.6 2.2 58 699-760 199-256 (372)
243 3t61_A Gluconokinase; PSI-biol 96.4 0.00095 3.2E-08 66.2 2.1 31 526-560 18-48 (202)
244 1sxj_C Activator 1 40 kDa subu 96.4 0.00021 7.1E-09 77.3 -3.1 48 512-559 30-79 (340)
245 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00058 2E-08 74.2 -0.2 37 514-550 10-48 (359)
246 2wji_A Ferrous iron transport 96.2 0.0026 9.1E-08 60.6 4.0 24 528-551 5-28 (165)
247 2p5t_B PEZT; postsegregational 96.2 0.0012 4E-08 68.4 1.4 37 522-560 28-64 (253)
248 3cm0_A Adenylate kinase; ATP-b 96.2 0.0019 6.5E-08 62.8 2.8 26 524-549 2-27 (186)
249 3r20_A Cytidylate kinase; stru 96.2 0.00092 3.1E-08 68.7 0.4 32 526-557 9-43 (233)
250 2wjg_A FEOB, ferrous iron tran 96.2 0.0021 7.3E-08 62.2 2.9 22 528-549 9-30 (188)
251 2eyu_A Twitching motility prot 96.1 3.7E-06 1.3E-10 88.1 -18.3 67 681-749 161-241 (261)
252 2orw_A Thymidine kinase; TMTK, 96.1 0.01 3.5E-07 58.4 7.6 53 709-763 76-139 (184)
253 1ega_A Protein (GTP-binding pr 96.1 0.0018 6E-08 69.0 2.0 25 525-549 7-31 (301)
254 1qhx_A CPT, protein (chloramph 96.1 0.0031 1.1E-07 60.8 3.6 26 526-551 3-28 (178)
255 2jaq_A Deoxyguanosine kinase; 96.0 0.0027 9.2E-08 62.5 2.9 22 528-549 2-23 (205)
256 1np6_A Molybdopterin-guanine d 96.0 0.0017 6E-08 63.5 1.4 34 526-559 6-42 (174)
257 1q3t_A Cytidylate kinase; nucl 96.0 0.0031 1.1E-07 64.3 3.3 26 523-548 13-38 (236)
258 2v1u_A Cell division control p 96.0 0.0071 2.4E-07 65.4 6.2 27 524-550 42-68 (387)
259 3kb2_A SPBC2 prophage-derived 96.0 0.0034 1.2E-07 59.9 3.2 23 528-550 3-25 (173)
260 1lv7_A FTSH; alpha/beta domain 95.9 0.0024 8.3E-08 65.8 2.2 35 515-551 36-70 (257)
261 1uf9_A TT1252 protein; P-loop, 95.9 0.0041 1.4E-07 61.2 3.5 30 526-560 8-37 (203)
262 1kht_A Adenylate kinase; phosp 95.9 0.0043 1.5E-07 60.3 3.5 26 525-550 2-27 (192)
263 1gtv_A TMK, thymidylate kinase 95.9 0.0011 3.7E-08 66.0 -0.8 31 528-558 2-32 (214)
264 3trf_A Shikimate kinase, SK; a 95.7 0.0049 1.7E-07 59.9 3.4 26 525-550 4-29 (185)
265 2rhm_A Putative kinase; P-loop 95.7 0.0046 1.6E-07 60.3 3.0 27 524-550 3-29 (193)
266 3io5_A Recombination and repai 95.7 0.0097 3.3E-07 63.7 5.6 26 523-549 26-52 (333)
267 3auy_A DNA double-strand break 95.7 0.0098 3.4E-07 65.1 5.8 31 516-547 16-46 (371)
268 2v54_A DTMP kinase, thymidylat 95.7 0.0058 2E-07 60.2 3.6 26 525-550 3-28 (204)
269 3lw7_A Adenylate kinase relate 95.6 0.0054 1.9E-07 58.3 3.2 20 527-546 2-21 (179)
270 3dm5_A SRP54, signal recogniti 95.6 0.052 1.8E-06 60.7 11.5 35 525-559 99-133 (443)
271 1ex7_A Guanylate kinase; subst 95.6 0.0052 1.8E-07 60.8 3.0 22 529-550 4-25 (186)
272 1vht_A Dephospho-COA kinase; s 95.6 0.0054 1.9E-07 61.4 3.2 31 525-560 3-33 (218)
273 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.022 7.5E-07 61.1 7.6 28 521-548 118-145 (331)
274 1jal_A YCHF protein; nucleotid 95.5 0.0086 2.9E-07 65.4 4.5 35 526-560 2-47 (363)
275 3iij_A Coilin-interacting nucl 95.5 0.0064 2.2E-07 58.9 3.1 26 524-549 9-34 (180)
276 3bgw_A DNAB-like replicative h 95.5 0.015 5.1E-07 65.4 6.5 35 514-548 185-219 (444)
277 2c95_A Adenylate kinase 1; tra 95.4 0.0073 2.5E-07 59.0 3.4 27 524-550 7-33 (196)
278 2wwf_A Thymidilate kinase, put 95.4 0.0077 2.6E-07 59.7 3.5 26 524-549 8-33 (212)
279 1xp8_A RECA protein, recombina 95.4 0.023 7.8E-07 62.2 7.3 27 522-548 70-96 (366)
280 1nn5_A Similar to deoxythymidy 95.4 0.0083 2.8E-07 59.5 3.5 27 523-549 6-32 (215)
281 1xx6_A Thymidine kinase; NESG, 95.3 0.034 1.2E-06 55.1 7.9 51 709-761 81-142 (191)
282 2plr_A DTMP kinase, probable t 95.3 0.0082 2.8E-07 59.3 3.3 28 525-552 3-30 (213)
283 1via_A Shikimate kinase; struc 95.3 0.0072 2.5E-07 58.3 2.8 23 528-550 6-28 (175)
284 2ze6_A Isopentenyl transferase 95.3 0.0072 2.5E-07 62.5 2.8 23 528-550 3-25 (253)
285 3ihw_A Centg3; RAS, centaurin, 95.2 0.014 4.8E-07 56.7 4.6 28 528-555 22-54 (184)
286 1ly1_A Polynucleotide kinase; 95.2 0.0093 3.2E-07 57.3 3.2 22 527-548 3-24 (181)
287 2iut_A DNA translocase FTSK; n 95.1 0.11 3.8E-06 59.8 12.3 41 519-559 207-251 (574)
288 3k53_A Ferrous iron transport 95.1 0.0097 3.3E-07 62.0 3.2 24 528-551 5-28 (271)
289 1gvn_B Zeta; postsegregational 95.1 0.0092 3.2E-07 63.0 3.0 33 525-559 32-64 (287)
290 1tev_A UMP-CMP kinase; ploop, 95.0 0.011 3.8E-07 57.4 3.2 24 526-549 3-26 (196)
291 2bwj_A Adenylate kinase 5; pho 95.0 0.0093 3.2E-07 58.4 2.7 28 523-550 9-36 (199)
292 1nks_A Adenylate kinase; therm 95.0 0.011 3.8E-07 57.3 3.2 24 528-551 3-26 (194)
293 2erx_A GTP-binding protein DI- 95.0 0.02 6.9E-07 53.8 4.9 21 528-548 5-25 (172)
294 2vli_A Antibiotic resistance p 94.9 0.0091 3.1E-07 57.7 2.3 27 524-550 3-29 (183)
295 1aky_A Adenylate kinase; ATP:A 94.9 0.013 4.6E-07 58.7 3.6 27 524-550 2-28 (220)
296 3q72_A GTP-binding protein RAD 94.9 0.012 4.2E-07 55.3 3.1 24 528-551 4-27 (166)
297 1ko7_A HPR kinase/phosphatase; 94.9 0.016 5.6E-07 61.8 4.2 35 513-548 132-166 (314)
298 1xjc_A MOBB protein homolog; s 94.8 0.013 4.4E-07 57.1 2.9 27 527-553 5-31 (169)
299 3llm_A ATP-dependent RNA helic 94.8 0.01 3.4E-07 60.4 2.2 25 523-547 73-97 (235)
300 2ged_A SR-beta, signal recogni 94.8 0.013 4.5E-07 56.8 2.9 25 526-550 48-72 (193)
301 2nzj_A GTP-binding protein REM 94.8 0.015 5.2E-07 55.0 3.3 23 528-550 6-28 (175)
302 1z2a_A RAS-related protein RAB 94.8 0.013 4.5E-07 54.9 2.9 22 528-549 7-28 (168)
303 3ake_A Cytidylate kinase; CMP 94.7 0.013 4.5E-07 57.7 2.9 23 528-550 4-26 (208)
304 2z0h_A DTMP kinase, thymidylat 94.7 0.015 5E-07 56.8 3.2 23 528-550 2-24 (197)
305 1zd8_A GTP:AMP phosphotransfer 94.7 0.016 5.3E-07 58.5 3.4 27 524-550 5-31 (227)
306 2cdn_A Adenylate kinase; phosp 94.7 0.018 6.1E-07 56.8 3.7 25 526-550 20-44 (201)
307 3q85_A GTP-binding protein REM 94.7 0.016 5.6E-07 54.5 3.3 23 528-550 4-26 (169)
308 2ce2_X GTPase HRAS; signaling 94.7 0.014 4.9E-07 54.3 2.8 22 528-549 5-26 (166)
309 1zuh_A Shikimate kinase; alpha 94.7 0.017 5.7E-07 55.2 3.3 24 526-549 7-30 (168)
310 1kao_A RAP2A; GTP-binding prot 94.6 0.015 5.2E-07 54.3 2.9 21 528-548 5-25 (167)
311 2dyk_A GTP-binding protein; GT 94.6 0.016 5.3E-07 54.1 2.9 23 528-550 3-25 (161)
312 1fzq_A ADP-ribosylation factor 94.6 0.016 5.5E-07 56.0 3.1 23 527-549 17-39 (181)
313 3fb4_A Adenylate kinase; psych 94.6 0.016 5.5E-07 57.7 3.2 23 528-550 2-24 (216)
314 2lkc_A Translation initiation 94.6 0.021 7E-07 54.3 3.7 25 525-549 7-31 (178)
315 1zak_A Adenylate kinase; ATP:A 94.6 0.016 5.4E-07 58.2 3.0 26 525-550 4-29 (222)
316 3b1v_A Ferrous iron uptake tra 94.6 0.017 5.8E-07 60.5 3.3 23 528-550 5-27 (272)
317 3tw8_B RAS-related protein RAB 94.6 0.017 5.9E-07 54.9 3.2 22 528-549 11-32 (181)
318 1u8z_A RAS-related protein RAL 94.6 0.016 5.5E-07 54.2 2.9 22 528-549 6-27 (168)
319 1e6c_A Shikimate kinase; phosp 94.5 0.017 5.6E-07 55.3 2.9 23 527-549 3-25 (173)
320 1z0j_A RAB-22, RAS-related pro 94.5 0.017 5.8E-07 54.3 2.9 23 528-550 8-30 (170)
321 2iyv_A Shikimate kinase, SK; t 94.5 0.016 5.5E-07 56.2 2.9 25 526-550 2-26 (184)
322 1z08_A RAS-related protein RAB 94.5 0.017 5.8E-07 54.4 2.9 22 528-549 8-29 (170)
323 1g16_A RAS-related protein SEC 94.5 0.016 5.6E-07 54.4 2.8 22 528-549 5-26 (170)
324 1svi_A GTP-binding protein YSX 94.5 0.017 5.8E-07 56.0 3.0 24 526-549 23-46 (195)
325 3pqc_A Probable GTP-binding pr 94.5 0.017 5.9E-07 55.7 3.0 23 528-550 25-47 (195)
326 1c1y_A RAS-related protein RAP 94.5 0.017 5.9E-07 54.1 2.9 21 528-548 5-25 (167)
327 1ky3_A GTP-binding protein YPT 94.4 0.018 6E-07 54.9 2.9 22 528-549 10-31 (182)
328 2pt5_A Shikimate kinase, SK; a 94.4 0.019 6.6E-07 54.5 3.2 22 528-549 2-23 (168)
329 1ek0_A Protein (GTP-binding pr 94.4 0.018 6.1E-07 54.1 2.9 22 528-549 5-26 (170)
330 2fn4_A P23, RAS-related protei 94.4 0.018 6E-07 54.8 2.9 22 528-549 11-32 (181)
331 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.018 6.3E-07 54.7 2.9 22 528-549 9-30 (177)
332 3dl0_A Adenylate kinase; phosp 94.4 0.019 6.5E-07 57.2 3.2 23 528-550 2-24 (216)
333 3t1o_A Gliding protein MGLA; G 94.4 0.019 6.5E-07 55.5 3.0 25 528-552 16-40 (198)
334 2pbr_A DTMP kinase, thymidylat 94.4 0.02 6.8E-07 55.6 3.2 23 528-550 2-24 (195)
335 1ukz_A Uridylate kinase; trans 94.4 0.02 6.7E-07 56.5 3.2 25 526-550 15-39 (203)
336 3t5d_A Septin-7; GTP-binding p 94.3 0.019 6.5E-07 59.9 3.1 23 528-550 10-32 (274)
337 1qf9_A UMP/CMP kinase, protein 94.3 0.02 6.8E-07 55.5 3.1 25 526-550 6-30 (194)
338 2cxx_A Probable GTP-binding pr 94.3 0.02 6.8E-07 55.1 3.0 22 528-549 3-24 (190)
339 1r2q_A RAS-related protein RAB 94.3 0.02 6.9E-07 53.7 2.9 21 528-548 8-28 (170)
340 3euj_A Chromosome partition pr 94.2 0.082 2.8E-06 59.8 8.2 71 689-761 377-464 (483)
341 4dsu_A GTPase KRAS, isoform 2B 94.2 0.021 7.2E-07 54.8 2.9 22 528-549 6-27 (189)
342 2orv_A Thymidine kinase; TP4A 94.2 0.18 6E-06 51.5 9.8 51 708-761 89-150 (234)
343 3bos_A Putative DNA replicatio 94.2 0.024 8E-07 56.8 3.3 28 525-552 51-78 (242)
344 3clv_A RAB5 protein, putative; 94.2 0.021 7.3E-07 55.2 2.9 22 528-549 9-30 (208)
345 3bc1_A RAS-related protein RAB 94.2 0.022 7.4E-07 54.8 2.9 21 528-548 13-33 (195)
346 2grj_A Dephospho-COA kinase; T 94.1 0.023 8E-07 56.3 3.2 24 526-549 12-35 (192)
347 2hxs_A RAB-26, RAS-related pro 94.1 0.025 8.5E-07 53.8 3.3 22 528-549 8-29 (178)
348 1moz_A ARL1, ADP-ribosylation 94.1 0.017 5.8E-07 55.3 2.1 23 526-548 18-40 (183)
349 1m7b_A RND3/RHOE small GTP-bin 94.1 0.033 1.1E-06 53.6 4.2 22 528-549 9-30 (184)
350 3qf4_B Uncharacterized ABC tra 94.1 10 0.00035 43.8 26.0 10 501-510 371-380 (598)
351 2oil_A CATX-8, RAS-related pro 94.1 0.022 7.5E-07 55.3 2.9 22 528-549 27-48 (193)
352 3e1s_A Exodeoxyribonuclease V, 94.1 0.055 1.9E-06 62.7 6.7 35 525-559 203-237 (574)
353 3tlx_A Adenylate kinase 2; str 94.1 0.024 8.2E-07 58.1 3.3 26 525-550 28-53 (243)
354 1r8s_A ADP-ribosylation factor 94.1 0.023 7.9E-07 53.2 2.9 21 528-548 2-22 (164)
355 1upt_A ARL1, ADP-ribosylation 94.1 0.023 8E-07 53.5 2.9 22 527-548 8-29 (171)
356 2y8e_A RAB-protein 6, GH09086P 94.1 0.023 7.8E-07 53.9 2.8 21 528-548 16-36 (179)
357 2w58_A DNAI, primosome compone 94.1 0.022 7.4E-07 56.1 2.8 32 527-558 55-86 (202)
358 1a7j_A Phosphoribulokinase; tr 94.0 0.014 4.8E-07 61.7 1.4 26 525-550 4-29 (290)
359 1qvr_A CLPB protein; coiled co 94.0 0.062 2.1E-06 65.3 7.2 29 527-555 589-617 (854)
360 3iby_A Ferrous iron transport 94.0 0.025 8.5E-07 58.6 3.2 23 528-550 3-25 (256)
361 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.026 8.9E-07 58.4 3.3 25 525-549 3-27 (260)
362 3t5g_A GTP-binding protein RHE 94.0 0.045 1.5E-06 52.2 4.8 20 528-547 8-27 (181)
363 2g6b_A RAS-related protein RAB 94.0 0.025 8.5E-07 53.9 2.9 22 528-549 12-33 (180)
364 2dby_A GTP-binding protein; GD 94.0 0.019 6.6E-07 62.8 2.3 22 528-549 3-24 (368)
365 1uj2_A Uridine-cytidine kinase 94.0 0.026 8.8E-07 58.0 3.2 24 527-550 23-46 (252)
366 1z0f_A RAB14, member RAS oncog 93.9 0.026 8.8E-07 53.5 2.9 22 528-549 17-38 (179)
367 3cbq_A GTP-binding protein REM 93.9 0.023 7.9E-07 55.8 2.6 22 528-549 25-46 (195)
368 2a9k_A RAS-related protein RAL 93.9 0.026 8.9E-07 53.9 2.9 22 528-549 20-41 (187)
369 2xtp_A GTPase IMAP family memb 93.9 0.028 9.5E-07 57.8 3.3 23 528-550 24-46 (260)
370 2efe_B Small GTP-binding prote 93.9 0.027 9.2E-07 53.7 2.9 22 528-549 14-35 (181)
371 3con_A GTPase NRAS; structural 93.9 0.026 9E-07 54.5 2.9 22 528-549 23-44 (190)
372 3be4_A Adenylate kinase; malar 93.9 0.03 1E-06 56.1 3.4 26 525-550 4-29 (217)
373 1jbk_A CLPB protein; beta barr 93.8 0.034 1.2E-06 53.1 3.6 27 524-550 41-67 (195)
374 4bas_A ADP-ribosylation factor 93.8 0.041 1.4E-06 53.3 4.1 22 527-548 18-39 (199)
375 2bme_A RAB4A, RAS-related prot 93.8 0.028 9.4E-07 54.0 2.8 22 528-549 12-33 (186)
376 1wf3_A GTP-binding protein; GT 93.7 0.03 1E-06 59.5 3.3 22 528-549 9-30 (301)
377 1ksh_A ARF-like protein 2; sma 93.7 0.032 1.1E-06 53.6 3.2 25 525-549 17-41 (186)
378 1nrj_B SR-beta, signal recogni 93.7 0.029 9.9E-07 55.6 2.9 24 527-550 13-36 (218)
379 4dhe_A Probable GTP-binding pr 93.7 0.02 6.7E-07 57.0 1.6 24 527-550 30-53 (223)
380 2gf0_A GTP-binding protein DI- 93.7 0.03 1E-06 54.4 2.9 21 528-548 10-30 (199)
381 2f6r_A COA synthase, bifunctio 93.7 0.031 1E-06 58.7 3.2 23 526-548 75-97 (281)
382 1vg8_A RAS-related protein RAB 93.7 0.03 1E-06 54.8 2.9 22 528-549 10-31 (207)
383 3a8t_A Adenylate isopentenyltr 93.6 0.036 1.2E-06 59.7 3.7 27 525-551 39-65 (339)
384 2gf9_A RAS-related protein RAB 93.6 0.03 1E-06 54.1 2.9 22 528-549 24-45 (189)
385 2bov_A RAla, RAS-related prote 93.6 0.03 1E-06 54.6 2.9 22 528-549 16-37 (206)
386 3kkq_A RAS-related protein M-R 93.6 0.031 1.1E-06 53.5 2.9 21 528-548 20-40 (183)
387 2fg5_A RAB-22B, RAS-related pr 93.6 0.031 1.1E-06 54.4 2.9 22 528-549 25-46 (192)
388 3i8s_A Ferrous iron transport 93.6 0.033 1.1E-06 58.2 3.3 23 528-550 5-27 (274)
389 2qmh_A HPR kinase/phosphorylas 93.6 0.046 1.6E-06 54.6 4.1 35 514-549 23-57 (205)
390 2cjw_A GTP-binding protein GEM 93.6 0.031 1.1E-06 54.7 2.9 22 528-549 8-29 (192)
391 3tkl_A RAS-related protein RAB 93.6 0.031 1.1E-06 54.0 2.9 22 528-549 18-39 (196)
392 1zbd_A Rabphilin-3A; G protein 93.6 0.036 1.2E-06 54.2 3.3 22 528-549 10-31 (203)
393 2il1_A RAB12; G-protein, GDP, 93.6 0.034 1.2E-06 54.1 3.1 22 528-549 28-49 (192)
394 1mh1_A RAC1; GTP-binding, GTPa 93.5 0.034 1.2E-06 53.2 2.9 21 528-548 7-27 (186)
395 2qu8_A Putative nucleolar GTP- 93.5 0.036 1.2E-06 55.7 3.2 23 527-549 30-52 (228)
396 3tqf_A HPR(Ser) kinase; transf 93.5 0.054 1.9E-06 52.8 4.3 35 513-548 4-38 (181)
397 3oes_A GTPase rhebl1; small GT 93.5 0.033 1.1E-06 54.6 2.8 23 527-549 25-47 (201)
398 1e4v_A Adenylate kinase; trans 93.5 0.035 1.2E-06 55.3 3.1 23 528-550 2-24 (214)
399 1lw7_A Transcriptional regulat 93.5 0.026 8.8E-07 61.5 2.3 33 687-719 292-329 (365)
400 3a1s_A Iron(II) transport prot 93.5 0.037 1.3E-06 57.3 3.3 23 528-550 7-29 (258)
401 2h57_A ADP-ribosylation factor 93.5 0.031 1.1E-06 54.1 2.6 23 528-550 23-45 (190)
402 1z06_A RAS-related protein RAB 93.5 0.035 1.2E-06 53.7 2.9 21 528-548 22-42 (189)
403 2xb4_A Adenylate kinase; ATP-b 93.4 0.037 1.3E-06 55.7 3.2 23 528-550 2-24 (223)
404 2o52_A RAS-related protein RAB 93.4 0.038 1.3E-06 54.2 3.2 22 528-549 27-48 (200)
405 1gwn_A RHO-related GTP-binding 93.4 0.052 1.8E-06 53.8 4.2 22 528-549 30-51 (205)
406 1zj6_A ADP-ribosylation factor 93.4 0.039 1.3E-06 53.3 3.2 22 527-548 17-38 (187)
407 3dz8_A RAS-related protein RAB 93.4 0.035 1.2E-06 53.9 2.8 22 528-549 25-46 (191)
408 3llu_A RAS-related GTP-binding 93.4 0.043 1.5E-06 53.6 3.5 24 528-551 22-45 (196)
409 3cnl_A YLQF, putative uncharac 93.3 0.043 1.5E-06 57.1 3.6 31 527-557 100-130 (262)
410 2a5j_A RAS-related protein RAB 93.3 0.037 1.3E-06 53.7 2.9 22 528-549 23-44 (191)
411 2h17_A ADP-ribosylation factor 93.3 0.036 1.2E-06 53.2 2.7 22 528-549 23-44 (181)
412 2ew1_A RAS-related protein RAB 93.3 0.037 1.3E-06 54.8 2.8 21 528-548 28-48 (201)
413 3iev_A GTP-binding protein ERA 93.3 0.039 1.3E-06 58.7 3.3 22 528-549 12-33 (308)
414 3l0o_A Transcription terminati 93.3 0.023 7.7E-07 62.3 1.3 52 498-550 137-199 (427)
415 2h92_A Cytidylate kinase; ross 93.3 0.032 1.1E-06 55.7 2.3 25 526-550 3-27 (219)
416 2bcg_Y Protein YP2, GTP-bindin 93.2 0.038 1.3E-06 54.2 2.8 22 528-549 10-31 (206)
417 3reg_A RHO-like small GTPase; 93.2 0.039 1.3E-06 53.6 2.9 22 528-549 25-46 (194)
418 2wsm_A Hydrogenase expression/ 93.2 0.038 1.3E-06 54.9 2.9 24 527-550 31-54 (221)
419 1ak2_A Adenylate kinase isoenz 93.2 0.048 1.6E-06 55.3 3.6 25 526-550 16-40 (233)
420 3cmw_A Protein RECA, recombina 93.2 0.26 9E-06 63.5 11.0 38 522-559 728-765 (1706)
421 1x3s_A RAS-related protein RAB 93.2 0.04 1.4E-06 53.1 2.9 22 528-549 17-38 (195)
422 2fv8_A H6, RHO-related GTP-bin 93.2 0.04 1.4E-06 54.3 2.9 22 528-549 27-48 (207)
423 1zd9_A ADP-ribosylation factor 93.2 0.041 1.4E-06 53.3 2.9 21 528-548 24-44 (188)
424 2atv_A RERG, RAS-like estrogen 93.2 0.041 1.4E-06 53.6 2.9 23 527-549 29-51 (196)
425 3v9p_A DTMP kinase, thymidylat 93.1 0.04 1.4E-06 56.2 2.9 28 524-551 23-50 (227)
426 1jwy_B Dynamin A GTPase domain 93.1 0.043 1.5E-06 58.0 3.2 23 528-550 26-48 (315)
427 2j1l_A RHO-related GTP-binding 93.1 0.046 1.6E-06 54.3 3.3 21 528-548 36-56 (214)
428 2f7s_A C25KG, RAS-related prot 93.1 0.047 1.6E-06 54.0 3.3 22 528-549 27-48 (217)
429 3cph_A RAS-related protein SEC 93.1 0.041 1.4E-06 54.0 2.9 23 527-549 21-43 (213)
430 2p5s_A RAS and EF-hand domain 93.1 0.042 1.4E-06 53.7 2.9 23 527-549 29-51 (199)
431 3def_A T7I23.11 protein; chlor 93.1 0.046 1.6E-06 56.5 3.3 22 528-549 38-59 (262)
432 2q3h_A RAS homolog gene family 93.0 0.049 1.7E-06 53.1 3.3 23 527-549 21-43 (201)
433 4edh_A DTMP kinase, thymidylat 93.0 0.048 1.6E-06 54.9 3.3 29 524-552 4-32 (213)
434 2iwr_A Centaurin gamma 1; ANK 93.0 0.034 1.2E-06 53.0 2.0 21 528-548 9-29 (178)
435 2p65_A Hypothetical protein PF 93.0 0.041 1.4E-06 52.5 2.6 28 524-551 41-68 (187)
436 3bwd_D RAC-like GTP-binding pr 93.0 0.05 1.7E-06 51.8 3.3 23 527-549 9-31 (182)
437 1sky_E F1-ATPase, F1-ATP synth 93.0 0.042 1.4E-06 61.8 3.1 45 514-559 140-184 (473)
438 1h65_A Chloroplast outer envel 93.0 0.047 1.6E-06 56.7 3.2 23 528-550 41-63 (270)
439 2b6h_A ADP-ribosylation factor 92.9 0.048 1.7E-06 53.2 3.1 23 526-548 29-51 (192)
440 3c5c_A RAS-like protein 12; GD 92.9 0.047 1.6E-06 52.9 2.9 21 528-548 23-43 (187)
441 3lv8_A DTMP kinase, thymidylat 92.9 0.055 1.9E-06 55.5 3.5 27 525-551 26-52 (236)
442 2fu5_C RAS-related protein RAB 92.9 0.034 1.2E-06 53.2 1.8 22 528-549 10-31 (183)
443 3d3q_A TRNA delta(2)-isopenten 92.9 0.048 1.6E-06 58.9 3.2 25 527-551 8-32 (340)
444 3exa_A TRNA delta(2)-isopenten 92.8 0.052 1.8E-06 58.0 3.3 25 526-550 3-27 (322)
445 3b60_A Lipid A export ATP-bind 92.8 17 0.00058 41.7 31.9 31 210-240 81-111 (582)
446 2aka_B Dynamin-1; fusion prote 92.8 0.048 1.6E-06 57.0 3.0 24 527-550 27-50 (299)
447 4tmk_A Protein (thymidylate ki 92.8 0.06 2E-06 54.3 3.5 27 525-551 2-28 (213)
448 2gco_A H9, RHO-related GTP-bin 92.8 0.048 1.7E-06 53.4 2.8 22 528-549 27-48 (201)
449 3zvl_A Bifunctional polynucleo 92.7 0.056 1.9E-06 60.1 3.6 27 524-550 256-282 (416)
450 3b5x_A Lipid A export ATP-bind 92.7 17 0.00059 41.7 34.4 32 209-240 80-111 (582)
451 2fh5_B SR-beta, signal recogni 92.7 0.066 2.3E-06 52.8 3.7 23 527-549 8-30 (214)
452 2g3y_A GTP-binding protein GEM 92.7 0.058 2E-06 54.1 3.3 23 528-550 39-61 (211)
453 1ltq_A Polynucleotide kinase; 92.6 0.055 1.9E-06 56.8 3.2 30 527-559 3-32 (301)
454 3pxi_A Negative regulator of g 92.6 0.18 6E-06 60.4 8.0 110 524-761 519-660 (758)
455 3tmk_A Thymidylate kinase; pho 92.6 0.064 2.2E-06 54.2 3.5 33 524-557 3-35 (216)
456 2atx_A Small GTP binding prote 92.6 0.054 1.8E-06 52.5 2.9 22 528-549 20-41 (194)
457 3n70_A Transport activator; si 92.6 0.069 2.4E-06 49.9 3.5 32 524-555 22-53 (145)
458 2j9r_A Thymidine kinase; TK1, 92.6 0.26 9E-06 49.5 7.9 52 709-762 101-163 (214)
459 2qz4_A Paraplegin; AAA+, SPG7, 92.6 0.057 1.9E-06 55.1 3.1 27 524-550 37-63 (262)
460 4a82_A Cystic fibrosis transme 92.6 17 0.00057 41.8 24.4 39 202-240 69-107 (578)
461 2ocp_A DGK, deoxyguanosine kin 92.6 0.06 2E-06 54.8 3.3 27 525-551 1-27 (241)
462 3ld9_A DTMP kinase, thymidylat 92.5 0.062 2.1E-06 54.6 3.3 27 525-551 20-46 (223)
463 1sxj_D Activator 1 41 kDa subu 92.4 0.025 8.7E-07 60.4 0.3 38 514-551 44-83 (353)
464 2x77_A ADP-ribosylation factor 92.4 0.046 1.6E-06 52.7 2.1 22 527-548 23-44 (189)
465 4djt_A GTP-binding nuclear pro 92.4 0.032 1.1E-06 55.3 0.9 22 528-549 13-34 (218)
466 3crm_A TRNA delta(2)-isopenten 92.3 0.064 2.2E-06 57.5 3.2 25 527-551 6-30 (323)
467 2hf9_A Probable hydrogenase ni 92.3 0.059 2E-06 53.7 2.8 23 527-549 39-61 (226)
468 1p5z_B DCK, deoxycytidine kina 92.3 0.042 1.4E-06 56.8 1.8 28 524-551 22-49 (263)
469 2r62_A Cell division protease 92.2 0.021 7.3E-07 58.9 -0.7 32 516-549 36-67 (268)
470 1ypw_A Transitional endoplasmi 92.2 0.028 9.5E-07 67.9 0.1 33 519-551 504-536 (806)
471 2hup_A RAS-related protein RAB 92.1 0.067 2.3E-06 52.6 2.9 22 528-549 31-52 (201)
472 4gzl_A RAS-related C3 botulinu 92.1 0.066 2.3E-06 52.7 2.8 23 526-548 30-52 (204)
473 2yc2_C IFT27, small RAB-relate 92.0 0.036 1.2E-06 54.1 0.8 22 528-549 22-43 (208)
474 3umf_A Adenylate kinase; rossm 91.9 0.067 2.3E-06 54.1 2.6 28 523-550 26-53 (217)
475 3cpj_B GTP-binding protein YPT 91.9 0.075 2.6E-06 53.0 2.9 22 528-549 15-36 (223)
476 3foz_A TRNA delta(2)-isopenten 91.8 0.083 2.8E-06 56.3 3.3 25 526-550 10-34 (316)
477 2v3c_C SRP54, signal recogniti 91.7 0.024 8.3E-07 63.4 -1.0 33 527-559 100-132 (432)
478 3q3j_B RHO-related GTP-binding 91.7 0.078 2.7E-06 52.7 2.9 23 527-549 28-50 (214)
479 2i1q_A DNA repair and recombin 91.7 0.091 3.1E-06 56.0 3.5 27 522-548 94-120 (322)
480 3r7w_A Gtpase1, GTP-binding pr 91.7 0.087 3E-06 55.9 3.3 26 525-550 2-27 (307)
481 2j0v_A RAC-like GTP-binding pr 91.5 0.083 2.8E-06 52.0 2.8 21 528-548 11-31 (212)
482 3syl_A Protein CBBX; photosynt 91.5 0.092 3.2E-06 55.1 3.3 26 525-550 66-91 (309)
483 3cmu_A Protein RECA, recombina 91.5 0.19 6.7E-06 65.5 6.8 45 514-559 369-416 (2050)
484 1puj_A YLQF, conserved hypothe 91.4 0.11 3.9E-06 54.5 3.8 30 526-555 120-149 (282)
485 2zts_A Putative uncharacterize 91.3 0.12 4.2E-06 52.0 3.9 25 523-547 27-51 (251)
486 3eph_A TRNA isopentenyltransfe 91.3 0.095 3.3E-06 57.8 3.2 24 527-550 3-26 (409)
487 2chg_A Replication factor C sm 90.7 0.12 4.1E-06 50.4 3.1 22 528-549 40-61 (226)
488 3ec1_A YQEH GTPase; atnos1, at 90.7 0.1 3.6E-06 56.9 2.9 25 525-549 161-185 (369)
489 1xwi_A SKD1 protein; VPS4B, AA 90.7 0.11 3.9E-06 55.4 3.1 27 524-550 43-69 (322)
490 3qf4_A ABC transporter, ATP-bi 90.6 28 0.00096 40.0 30.7 13 500-512 358-370 (587)
491 1wxq_A GTP-binding protein; st 90.5 0.12 4.3E-06 56.9 3.3 23 528-550 2-24 (397)
492 3sr0_A Adenylate kinase; phosp 90.5 0.13 4.6E-06 51.4 3.2 23 528-550 2-24 (206)
493 4hlc_A DTMP kinase, thymidylat 90.5 0.13 4.6E-06 51.2 3.2 26 526-551 2-27 (205)
494 2hjg_A GTP-binding protein ENG 90.4 0.11 3.8E-06 57.9 2.8 22 528-549 5-26 (436)
495 3hws_A ATP-dependent CLP prote 90.4 0.12 4E-06 56.0 2.9 25 526-550 51-75 (363)
496 3h2y_A GTPase family protein; 90.3 0.11 3.8E-06 56.8 2.6 25 525-549 159-183 (368)
497 3th5_A RAS-related C3 botulinu 89.7 0.054 1.8E-06 53.1 0.0 23 526-548 30-52 (204)
498 3co5_A Putative two-component 90.1 0.095 3.3E-06 48.8 1.6 28 524-551 25-52 (143)
499 3gj0_A GTP-binding nuclear pro 90.1 0.1 3.4E-06 51.9 1.8 38 699-736 166-208 (221)
500 1d2n_A N-ethylmaleimide-sensit 90.0 0.13 4.5E-06 53.1 2.8 26 524-549 62-87 (272)
No 1
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-70 Score=642.84 Aligned_cols=533 Identities=15% Similarity=0.145 Sum_probs=384.6
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
++++++++++||+ .+++.+++.++..++.+..|++++.++|.+.. ++...++...++++++.++ ..
T Consensus 11 ~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (587)
T 3qf4_A 11 SKTLARYLKPYWI---------FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALI----GA 77 (587)
T ss_dssp CCCGGGGTGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH----HH
Confidence 3456778888876 35666667777888889999999999997643 3333222211111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
+..++...+ ..+ ....+...+|..+|.|++++++ +++ + .+|+++|++.+...+......++..++.++
T Consensus 78 ~~~~~~~~~----~~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 152 (587)
T 3qf4_A 78 VGGIGCTVF----ASY-ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152 (587)
T ss_dssp HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222111 111 2223567889999999988876 322 2 379999999999877666666777777777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
+.+++++.++|++++++++.+|+.+++..++.++..+..++.++..++....+.|..+++++||+|+.|+.+.+++.+..
T Consensus 153 ~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~ 232 (587)
T 3qf4_A 153 GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKAN 232 (587)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 77778888999999998888888888888888888888877788888888888999999999999999998875444443
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
++..+...+.................+..++.+.++++++..|.+++|.+.+++.++..+..++..+...+..+......
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 312 (587)
T 3qf4_A 233 ESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASAS 312 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211111111111111122222233344567788899999999888887777777777666666666666777
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
.+|+.++.+. ++..... ......+...+.|+++||+|+|+++++++|+|+||+|++
T Consensus 313 ~~ri~~~l~~---~~~~~~~---------------------~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 313 AKRVLEVLNE---KPAIEEA---------------------DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHC---CCSCCCC---------------------TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECT
T ss_pred HHHHHHHHcC---CCccCCC---------------------CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcC
Confidence 7887765432 1110000 000011123467999999999976567899999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++|||||||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|+||||+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~-----------------------~~~~~r~~i~~v~Q~ 425 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-----------------------KLKDLRGHISAVPQE 425 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB-----------------------CHHHHHHHEEEECSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC-----------------------CHHHHHhheEEECCC
Confidence 999999999999999999999999999999999965543332 222456789999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t 684 (788)
|++|++|++|||.++....+ ++++.++++.+++.+... .++|+++
T Consensus 426 ~~lf~~tv~eni~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 426 TVLFSGTIKENLKWGREDAT----------------------------------DDEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp CCCCSEEHHHHHTTTCSSCC----------------------------------HHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CcCcCccHHHHHhccCCCCC----------------------------------HHHHHHHHHHhCcHHHHHhcccchhh
Confidence 99999999999999865433 344455555555544333 3479999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. +++|.+||||||||++|||||+++|++||||||||+||+++|+.+++.+++ +|+|+|+||||++++..||+|++|+
T Consensus 472 ~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~ 551 (587)
T 3qf4_A 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLH 551 (587)
T ss_dssp EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEE
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEE
Confidence 7 899999999999999999999999999999999999999999999999976 6999999999999999999999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 552 ~G~i 555 (587)
T 3qf4_A 552 EGKV 555 (587)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9865
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=6.2e-71 Score=697.62 Aligned_cols=449 Identities=18% Similarity=0.198 Sum_probs=353.4
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
+.+.+|.++|.|+++++. |++ + .+|+++|++.++..+...+..++..++.+++.+++++.++|++++++++.+
T Consensus 167 ~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~ 246 (1321)
T 4f4c_A 167 MNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVT 246 (1321)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557789999999988775 442 2 389999999999876666677788888888888888999999999999888
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH---
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE--- 383 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--- 383 (788)
|+.+++..++.++..+...+.++..++....+.|.+.++++||+|+.|+.+.+++ .+..++..+...+.....
T Consensus 247 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 322 (1321)
T 4f4c_A 247 PIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERY----STAVEEAKKAGVLKGLFLGIS 322 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999988888888888888888899999999999999999887644 444443333322221111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCC
Q 040758 384 -FFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK 462 (788)
Q Consensus 384 -~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~ 462 (788)
........+...+.+.++++++..|.+|+|.+..++.++..+..++..+...+..+......++|+.++. +.++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l---~~~~~~ 399 (1321)
T 4f4c_A 323 FGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVL---DRKPVI 399 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccc
Confidence 1111112222233344556778899999999988888887777777777766677777777788887653 322111
Q ss_pred CCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHH
Q 040758 463 NLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTS 541 (788)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKST 541 (788)
.. . ......+....+.|+|+||+|+||+. ++++|+|+||+|++||++||||||||||||
T Consensus 400 ~~----------------~----~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 459 (1321)
T 4f4c_A 400 DS----------------S----SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKST 459 (1321)
T ss_dssp SC----------------S----SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHH
T ss_pred cc----------------c----ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHH
Confidence 00 0 00111122345789999999999853 468999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 542 Ll~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
|+++|+|+|+|++|+|.+||.|.+++ +.+.+|++||||+|+|+||++||+|||+||.
T Consensus 460 ll~ll~~~~~~~~G~I~idG~~i~~~-----------------------~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 460 IISLLLRYYDVLKGKITIDGVDVRDI-----------------------NLEFLRKNVAVVSQEPALFNCTIEENISLGK 516 (1321)
T ss_dssp HHHHHTTSSCCSEEEEEETTEETTTS-----------------------CHHHHHHHEEEECSSCCCCSEEHHHHHHTTC
T ss_pred HHHHhccccccccCcccCCCccchhc-----------------------cHHHHhhcccccCCcceeeCCchhHHHhhhc
Confidence 99999999999999999976655444 2335678899999999999999999999998
Q ss_pred CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHH
Q 040758 622 WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRL 700 (788)
Q Consensus 622 ~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRi 700 (788)
++.+.+++.+||+.+++++|+.. .++|++|. +|+|.+|||||||||
T Consensus 517 ~~~~~~~v~~a~~~a~l~~~i~~---------------------------------lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 517 EGITREEMVAACKMANAEKFIKT---------------------------------LPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHH---------------------------------STTTTSSEESSSSCCCCHHHHHHH
T ss_pred ccchHHHHHHHHHHccchhHHHc---------------------------------CCCCCccEecCCCCCCCHHHHHHH
Confidence 76666666666666665444322 24799997 999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||||+++||+||||||||||||+++|+.+++.|++ +|+|+|+||||+++++.||+|+||++|+.
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~i 630 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQV 630 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEE
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999986 69999999999999999999999999964
No 3
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3e-70 Score=642.73 Aligned_cols=535 Identities=17% Similarity=0.191 Sum_probs=392.6
Q ss_pred hHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHH
Q 040758 130 LNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGI 208 (788)
Q Consensus 130 ~~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~ 208 (788)
+...+++++++++++|+ .+++.++++++..++.+..|++++.++|.+.. .+...+....+.+++++++.
T Consensus 21 ~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~- 90 (598)
T 3qf4_B 21 PTATLRRLLGYLRPHTF---------TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALT- 90 (598)
T ss_dssp HHHHHHHHGGGTGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH-
Confidence 45678889999988876 36666677777888889999999999998653 33222222111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 209 PFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAA 281 (788)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~ 281 (788)
.+..++...+. .. ....+...+|..+|.|+.+++. +++ + .+|+++|++.+...+...+..++..+
T Consensus 91 ---~~~~~~~~~~~----~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 162 (598)
T 3qf4_B 91 ---SLLFWLQGKIM----LT-LSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGI 162 (598)
T ss_dssp ---HHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ---HHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222221111 11 1223567788999999988876 332 2 37999999999987766677778888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHH
Q 040758 282 VDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLL 361 (788)
Q Consensus 282 i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~ 361 (788)
+.+++.+++++.++|++++++++..|+.+++..++.++..+.....++..++..+.+.|..+++++||+|+.|+.+.+++
T Consensus 163 ~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 242 (598)
T 3qf4_B 163 VTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF 242 (598)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHH
Confidence 88888888899999999999888888888888888888888888888888888888899999999999999999887655
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 362 LQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISA 441 (788)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 441 (788)
.+..++..+...+.................+..++.++++++++..|.+++|.+.+++.++..+..++..+...+..+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 322 (598)
T 3qf4_B 243 DRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQM 322 (598)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332222222222222222223333334445567788899999999887777666666666666666666666
Q ss_pred HHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeE
Q 040758 442 FSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSL 521 (788)
Q Consensus 442 ~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl 521 (788)
.....+|+.++.+. +...... ...+.....+.|+++||+|+|++ ++++|+|+||
T Consensus 323 ~~~s~~ri~~~l~~---~~~~~~~----------------------~~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~isl 376 (598)
T 3qf4_B 323 ALASAERIFEILDL---EEEKDDP----------------------DAVELREVRGEIEFKNVWFSYDK-KKPVLKDITF 376 (598)
T ss_dssp HHHHHHHHHHHTTS---CCCCCCS----------------------SCCCCCSCCCCEEEEEEECCSSS-SSCSCCSEEE
T ss_pred HHHHHHHHHHHHcC---CCCCCCC----------------------CCCCCCCCCCeEEEEEEEEECCC-CCccccceEE
Confidence 67777887765432 2110000 00111223467999999999974 5679999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|||
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~-----------------------~~~~~r~~i~~ 433 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI-----------------------KRSSLRSSIGI 433 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGS-----------------------CHHHHHHHEEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhC-----------------------CHHHHHhceEE
Confidence 9999999999999999999999999999999999999965543322 12245678999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LN 680 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~ 680 (788)
|||+|++|++||+|||.++....+. +++.++++.+++++..+. ++
T Consensus 434 v~Q~~~lf~~tv~eni~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 479 (598)
T 3qf4_B 434 VLQDTILFSTTVKENLKYGNPGATD----------------------------------EEIKEAAKLTHSDHFIKHLPE 479 (598)
T ss_dssp ECTTCCCCSSBHHHHHHSSSTTCCT----------------------------------THHHHHTTTTTCHHHHHTSTT
T ss_pred EeCCCccccccHHHHHhcCCCCCCH----------------------------------HHHHHHHHHhCCHHHHHhccc
Confidence 9999999999999999997543332 344455555555443333 47
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEE
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~I 757 (788)
|+++. +++|.+|||||||||+|||||+++|++||||||||+||+++++.+++.+++ +|+|+|+||||++.++.||+|
T Consensus 480 g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i 559 (598)
T 3qf4_B 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLI 559 (598)
T ss_dssp GGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEE
T ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEE
Confidence 99997 899999999999999999999999999999999999999999999999875 699999999999999889999
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
++|++|+.
T Consensus 560 ~~l~~G~i 567 (598)
T 3qf4_B 560 IVLRDGEI 567 (598)
T ss_dssp EEECSSSE
T ss_pred EEEECCEE
Confidence 99999975
No 4
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.6e-69 Score=631.24 Aligned_cols=535 Identities=16% Similarity=0.188 Sum_probs=394.4
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
.+.+++++++++++++ .+++.+++.++..++.+..|++++.++|.+........ ..++++++++..++
T Consensus 10 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKA---------GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILPFMILGLMFV 77 (582)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH---HHHHHHHHHHHHHH
Confidence 4567788888888765 35555666677778888999999999998654221111 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++... +..+ ....+...+|..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++.
T Consensus 78 ~~~~~~~~~~----~~~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T 3b5x_A 78 RGLSGFASSY----CLSW-VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGAS 152 (582)
T ss_pred HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211 1112 2233567889999999988775 4432 3799999999998776677778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
+++.+++++.++|++++++++.+|+.+++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.+
T Consensus 153 ~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b5x_A 153 IIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDK 232 (582)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHH
Confidence 88888888889999999888888888888888888888888888888888888889999999999999999988765544
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+..............+..+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T 3b5x_A 233 VSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433322222222222222222333333344456678889999999999888888888888887777777777777
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
..++|+.++.+ .+.... . +..+.+...+.|+++||+|+|+++++++|+|+||+|
T Consensus 313 ~a~~ri~~~l~---~~~~~~--~---------------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i 366 (582)
T 3b5x_A 313 AACQTLFGLMD---LETERD--N---------------------GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSI 366 (582)
T ss_pred HHHHHHHHHHc---CCCcCC--C---------------------CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEE
Confidence 77888766532 211100 0 000011124579999999999743367999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+|+|+|+++|++|+|.+||.|..+. +...+|++|||||
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY-----------------------KLTNLRRHFALVS 423 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhC-----------------------CHHHHhcCeEEEc
Confidence 99999999999999999999999999999999999965443222 1224567899999
Q ss_pred cccccCCCCHHHHhcCCC-CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 604 QRPYMVLGSLRQQLIYPT-WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
|+|.+|++|++|||.++. .. .+++++.++++.+++++..++ ++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~~~p~g 469 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGE----------------------------------YTREQIEQAARQAHAMEFIENMPQG 469 (582)
T ss_pred CCCccccccHHHHHhccCCCC----------------------------------CCHHHHHHHHHHCCCHHHHHhCccc
Confidence 999999999999999874 21 134567777888888765555 489
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
++|. +++|.+||||||||++|||||+++|++||||||||+||+++++.+++.|++ +|+|+|+||||++.++.||+|+
T Consensus 470 ~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~ 549 (582)
T 3b5x_A 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549 (582)
T ss_pred ccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999875 5999999999999888999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 550 ~l~~G~i 556 (582)
T 3b5x_A 550 VVDEGEI 556 (582)
T ss_pred EEECCEE
Confidence 9999975
No 5
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3e-70 Score=640.50 Aligned_cols=537 Identities=18% Similarity=0.215 Sum_probs=389.1
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ----EQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~----~~~~~~ll~~~~~~~~~~~ 209 (788)
+++++++++|||+ .+++.++++++..++.+..|++++.++|.+..... ..+......+.+++++..+
T Consensus 2 ~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (578)
T 4a82_A 2 IKRYLQFVKPYKY---------RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72 (578)
T ss_dssp HHHHHHHHGGGHH---------HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 5788899999886 35666666777777888999999999998654221 1111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..+..++..+ +..+ ....+...+|..+|.|+.+++. +++. .+|+++|++.+.+.+...+..++..++
T Consensus 73 ~~~~~~~~~~~----~~~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~ 147 (578)
T 4a82_A 73 VRPPIEFIRQY----LAQW-TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCI 147 (578)
T ss_dssp THHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222211 1112 2233567789999999988775 4332 279999999998866554555667777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
.++..+++++.++|++++++++..|+.+++..++.++..+...+.++..++....+.|..+++++||+|+.|+.+.+++.
T Consensus 148 ~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 227 (578)
T 4a82_A 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD 227 (578)
T ss_dssp HHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 77777778888999999998888888888888888988888888888888888889999999999999999998876554
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAF 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 442 (788)
+..++..+...+.................+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 307 (578)
T 4a82_A 228 KKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS 307 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333322222211111122222222333344455677888999999999888887777777777777666667777
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLV 522 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~ 522 (788)
...++|+.++.+ .+...... .+..+.+...+.|+++||+|+|+++++++|+|+||+
T Consensus 308 ~~s~~ri~~~l~---~~~~~~~~---------------------~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~ 363 (578)
T 4a82_A 308 FASMDRVFQLID---EDYDIKNG---------------------VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLS 363 (578)
T ss_dssp HHHHHHHHHHHT---CCCSSCCC---------------------TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEE
T ss_pred HHHHHHHHHHHc---CCCcccCC---------------------CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEE
Confidence 777888876543 22110000 000111123467999999999986566899999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
|++||++|||||||||||||+++|+|+++|++|+|.+||.|..++ +.+.+|++||||
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~-----------------------~~~~~r~~i~~v 420 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF-----------------------LTGSLRNQIGLV 420 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS-----------------------CHHHHHHTEEEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC-----------------------CHHHHhhheEEE
Confidence 999999999999999999999999999999999999965443322 122456779999
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
||+|++|++|++|||.++.+..+ ++++.++++.+++.+.... ++|
T Consensus 421 ~Q~~~l~~~tv~eni~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~lp~g 466 (578)
T 4a82_A 421 QQDNILFSDTVKENILLGRPTAT----------------------------------DEEVVEAAKMANAHDFIMNLPQG 466 (578)
T ss_dssp CSSCCCCSSBHHHHHGGGCSSCC----------------------------------HHHHHHHHHHTTCHHHHHTSTTG
T ss_pred eCCCccCcccHHHHHhcCCCCCC----------------------------------HHHHHHHHHHhCcHHHHHhCcch
Confidence 99999999999999999754332 3455556666665544333 479
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
++|. +++|.+||||||||++|||||+++|++||||||||+||+++++.+.+.+++ +++|+|+||||++.++.||+|+
T Consensus 467 ~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~ 546 (578)
T 4a82_A 467 YDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV 546 (578)
T ss_dssp GGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEE
T ss_pred hhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999875 6899999999999998999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 547 ~l~~G~i 553 (578)
T 4a82_A 547 VIENGHI 553 (578)
T ss_dssp EEETTEE
T ss_pred EEECCEE
Confidence 9999864
No 6
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.2e-69 Score=629.53 Aligned_cols=535 Identities=16% Similarity=0.180 Sum_probs=392.5
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
.+.+++++++++++|+ .+++.+++.++..++.+..|++++.++|.+........ +.++++++++..++
T Consensus 10 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKA---------GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPLVVIGLMIL 77 (582)
T ss_dssp CHHHHHHHHHHGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHH---HHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH---HHHHHHHHHHHHHH
Confidence 3457788888888865 35555666677777888999999999997654322111 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++... +..+ ....+...+|..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++.
T Consensus 78 ~~~~~~~~~~----~~~~-~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T 3b60_A 78 RGITSYISSY----CISW-VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_dssp HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211 1111 2233567889999999988776 3322 3799999999998777777778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
+++.+++++.++|++++++++..|+.+++..++.++..+..+..++..+++...+.|..+++++||+|+.|+.+.+++.+
T Consensus 153 ~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b60_A 153 IIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHH
Confidence 88888888889999999988888888888888888888888888888888888889999999999999999988865554
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+..............+..+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T 3b60_A 233 VSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333222222222222222222233333445566778999999999888888888888887777777777777
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
..++|+.++.+. +.... . +..+.+...+.|+++||+|+|+++++++|+|+||+|
T Consensus 313 ~a~~ri~~~l~~---~~~~~--~---------------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i 366 (582)
T 3b60_A 313 AACQTLFAILDS---EQEKD--E---------------------GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKI 366 (582)
T ss_dssp HHHHHHHHHHHS---CCSCC--C---------------------CCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEE
T ss_pred HHHHHHHHHHcC---CCCcc--C---------------------CCCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEE
Confidence 778887765432 11100 0 000011124579999999999743367999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+++|+|+++|++|+|.+||.|..++ +...+|++|+|||
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~ 423 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY-----------------------TLASLRNQVALVS 423 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB-----------------------CHHHHHHTEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEcccc-----------------------CHHHHHhhCeEEc
Confidence 99999999999999999999999999999999999965443222 1123466799999
Q ss_pred cccccCCCCHHHHhcCCC-CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 604 QRPYMVLGSLRQQLIYPT-WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
|+|.+|++|++|||.++. .. .+++++.++++.+++++..++ ++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~p~g 469 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEE----------------------------------YSREQIEEAARMAYAMDFINKMDNG 469 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSC----------------------------------CCHHHHHHHHHTTTCHHHHHHSTTG
T ss_pred cCCcCCCCCHHHHHhccCCCC----------------------------------CCHHHHHHHHHHcCCHHHHHhcccc
Confidence 999999999999999874 21 134567777888887665554 489
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
+++. +++|.+||||||||++|||||+++|++||||||||+||+++++.+++.+++ +|+|+|+||||++.++.||+|+
T Consensus 470 ~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~ 549 (582)
T 3b60_A 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIV 549 (582)
T ss_dssp GGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEE
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999875 5999999999999888999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 550 ~l~~G~i 556 (582)
T 3b60_A 550 VVEDGII 556 (582)
T ss_dssp EEETTEE
T ss_pred EEECCEE
Confidence 9999864
No 7
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=4.2e-68 Score=624.60 Aligned_cols=538 Identities=18% Similarity=0.182 Sum_probs=389.1
Q ss_pred HHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHHH
Q 040758 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ----EQFAKQLLYYLGAFAGG 207 (788)
Q Consensus 132 ~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~----~~~~~~ll~~~~~~~~~ 207 (788)
+.+++++++++++++ .+++.+++.++..++.+..|++++.++|.+...+. ..++.....++++++
T Consensus 5 ~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (595)
T 2yl4_A 5 PEARKLLGLAYPERR---------RLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFL-- 73 (595)
T ss_dssp HHHHHHHHHHGGGHH---------HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHH--
Confidence 346778888888765 35555566667777788999999999997643221 111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 040758 208 IPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNA 280 (788)
Q Consensus 208 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~ 280 (788)
+..+..++...+ ..+ ....+...+|..+|.|+.+.+. +++ + .+|+++|++.+...+...+..++..
T Consensus 74 --~~~~~~~~~~~~----~~~-~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~ 146 (595)
T 2yl4_A 74 --CGAAANAIRVYL----MQT-SGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRA 146 (595)
T ss_dssp --HHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred --HHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112221111 111 2233567888999999988775 332 2 3799999999988766666777777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHH
Q 040758 281 AVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQL 360 (788)
Q Consensus 281 ~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~ 360 (788)
++.+++.+++++.++|++++++++.+|+.+++..++.++..+..+..++..+++...+.|..+++++||+|+.|+.+.++
T Consensus 147 ~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 226 (595)
T 2yl4_A 147 GAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEK 226 (595)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHH
Confidence 78777777888899999999888888888888888888888888778888888888889999999999999999988865
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 361 LLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAIS 440 (788)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~ 440 (788)
+.+..++..+...+.................+..++.+.++++++..|.+|+|.+.+++.++..+..++..+...+..+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 306 (595)
T 2yl4_A 227 YASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELM 306 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444433222222111111222222222233334456677889999999998888877777777777776666666
Q ss_pred HHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCc-EEEeeeEEEcCCC-Cccceee
Q 040758 441 AFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKL-LDIEDLTLKTPTS-KATLVRD 518 (788)
Q Consensus 441 ~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-I~~~nvsf~y~~~-~~~vL~~ 518 (788)
......+|+.++.+ .+...... .+..+.....+. |+++||+|+|+++ ++++|+|
T Consensus 307 ~~~~s~~ri~~~l~---~~~~~~~~---------------------~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~ 362 (595)
T 2yl4_A 307 KGLGAGGRLWELLE---REPKLPFN---------------------EGVILNEKSFQGALEFKNVHFAYPARPEVPIFQD 362 (595)
T ss_dssp HHHHHHHHHHHHHT---CCCSSCSS---------------------CSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEE
T ss_pred HHHHHHHHHHHHHc---CCCccCCC---------------------CCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccc
Confidence 66677788766543 21110000 000000112456 9999999999743 3579999
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcce
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG 598 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 598 (788)
+||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|..++ +...+|++
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~-----------------------~~~~~~~~ 419 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL-----------------------NPVWLRSK 419 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTB-----------------------CHHHHHHS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhC-----------------------CHHHHHhc
Confidence 9999999999999999999999999999999999999999965443222 11234667
Q ss_pred EEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc
Q 040758 599 VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678 (788)
Q Consensus 599 i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 678 (788)
|+||||+|.+|++|++|||.++.... ...+++++.++++.+++++..++
T Consensus 420 i~~v~Q~~~l~~~tv~eni~~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~~~~~ 468 (595)
T 2yl4_A 420 IGTVSQEPILFSCSIAENIAYGADDP-------------------------------SSVTAEEIQRVAEVANAVAFIRN 468 (595)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTSSST-------------------------------TTSCHHHHHHHHHHTTCHHHHHT
T ss_pred eEEEccCCcccCCCHHHHHhhcCCCc-------------------------------cccCHHHHHHHHHHcCCHHHHHh
Confidence 99999999999999999999974320 01245677888888888766554
Q ss_pred -CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcC
Q 040758 679 -LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFH 754 (788)
Q Consensus 679 -~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~ 754 (788)
++|+++. +++|.+|||||||||+|||||+++|++||||||||+||+++++.+.+.|++ .|+|+|+||||++.++.|
T Consensus 469 l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~ 548 (595)
T 2yl4_A 469 FPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNA 548 (595)
T ss_dssp SSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHS
T ss_pred CcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcC
Confidence 4899996 899999999999999999999999999999999999999999999999875 589999999999988889
Q ss_pred CEEEEEccCCC
Q 040758 755 KRVLRISTVDQ 765 (788)
Q Consensus 755 D~Ilvl~~g~~ 765 (788)
|+|++|++|+.
T Consensus 549 d~i~~l~~G~i 559 (595)
T 2yl4_A 549 NMVAVLDQGKI 559 (595)
T ss_dssp SEEEEEETTEE
T ss_pred CEEEEEECCEE
Confidence 99999999964
No 8
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=8.5e-69 Score=678.16 Aligned_cols=536 Identities=16% Similarity=0.141 Sum_probs=359.2
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHH---HHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ---FAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~---~~~~ll~~~~~~~~~~~ 209 (788)
.+.+++.+.+|+|+. +++.++++.+...+...+++++..+++......... .....++++++.++..+
T Consensus 739 ~~~~~~~~~~~~~~~---------l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 809 (1321)
T 4f4c_A 739 NLFEILYHARPHALS---------LFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGI 809 (1321)
T ss_dssp CHHHHHHHTGGGHHH---------HHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 355667777887762 333344444444455577778888888664322111 11111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC--CCCC---c----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQS--IIDN---P----DQRIVDDLSSFTGTALSFSLTLFNA 280 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~--~~~~---~----~~Ri~~Dv~~v~~~~~~~~~~ii~~ 280 (788)
+.++..++.. + ....+.+.+|..+|.++.+.+ +|+. + .+|+++|++.+...+...+..++..
T Consensus 810 ~~~~~~~~~~--------~-~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~ 880 (1321)
T 4f4c_A 810 CSFLMTFFMG--------I-ASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITT 880 (1321)
T ss_dssp HHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 1222222211 1 122345778899999997655 5664 2 2799999999988666666677777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHH
Q 040758 281 AVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQL 360 (788)
Q Consensus 281 ~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~ 360 (788)
++.+++.+++++.++|++++++++.+|+.+++..++.++......+..+..++......|.++++++||+|+.|+.+.++
T Consensus 881 ~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~ 960 (1321)
T 4f4c_A 881 LVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYEN 960 (1321)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHH
T ss_pred hhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHH
Confidence 77887777888889999999888888877777777777665555444555556666678999999999999999888765
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 040758 361 LLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQS--VSAFNHILGDFSLIVYQFQA 438 (788)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~--~~~~~~~~~~l~~~~~~~~~ 438 (788)
+.+..+...+...+.................+...+.+.+++.++..|..++|.+... +.++......+..+...+..
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1040 (1321)
T 4f4c_A 961 FCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPE 1040 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444333322211111111111111122222233334455666676666543221 11111111112222222333
Q ss_pred HHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-Ccccee
Q 040758 439 ISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVR 517 (788)
Q Consensus 439 l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~ 517 (788)
+.......+|+.++.+. +.+.+. . .......+..|.|+|+||+|+||++ +.++|+
T Consensus 1041 ~~~~~~a~~ri~~~l~~---~~~~~~----------------~-----~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~ 1096 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRK---ISKIDS----------------L-----SLAGEKKKLYGKVIFKNVRFAYPERPEIEILK 1096 (1321)
T ss_dssp HHHHHHHHHHHHHHHHC---CCSSCT----------------T-----CCCSBCCCCCCCEEEEEEEECCTTSCSSCSEE
T ss_pred HHHHHHHHHHHHHHhhC---cccCCC----------------c-----cCCCCCCCCCCeEEEEEEEEeCCCCCCCcccc
Confidence 44444556666554332 111000 0 0001112345789999999999853 447999
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+||+|+|||++|||||||||||||+++|.|+|+|++|+|.+||.|..++ +++.+|+
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i-----------------------~~~~lR~ 1153 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL-----------------------NPEHTRS 1153 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB-----------------------CHHHHHT
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC-----------------------CHHHHHh
Confidence 99999999999999999999999999999999999999999976655444 2346788
Q ss_pred eEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 598 GVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
+|++|||||+||+|||||||+||.... ..++++++++++.+++++++.
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gld~~--------------------------------~~sd~ei~~Al~~a~l~~~I~ 1201 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGLDPS--------------------------------SVTMAQVEEAARLANIHNFIA 1201 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSSCTT--------------------------------TSCHHHHHHHHHHTTCHHHHH
T ss_pred heEEECCCCEeeCccHHHHHhccCCCC--------------------------------CCCHHHHHHHHHHhCChHHHH
Confidence 899999999999999999999984321 134566677777777655444
Q ss_pred c-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhc
Q 040758 678 R-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDF 753 (788)
Q Consensus 678 ~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~ 753 (788)
. ++||||. +|+|.+|||||||||||||||++||+|||||||||+||+++|+.|++.|++ +|+|+|+||||+++++.
T Consensus 1202 ~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~ 1281 (1321)
T 4f4c_A 1202 ELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN 1281 (1321)
T ss_dssp TSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT
T ss_pred cCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh
Confidence 3 5899997 999999999999999999999999999999999999999999999999987 69999999999999999
Q ss_pred CCEEEEEccCCC
Q 040758 754 HKRVLRISTVDQ 765 (788)
Q Consensus 754 ~D~Ilvl~~g~~ 765 (788)
||+|+||++|+.
T Consensus 1282 aD~I~Vld~G~I 1293 (1321)
T 4f4c_A 1282 ADCIAVVSNGTI 1293 (1321)
T ss_dssp CSEEEEESSSSE
T ss_pred CCEEEEEECCEE
Confidence 999999999975
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.8e-65 Score=646.40 Aligned_cols=448 Identities=19% Similarity=0.198 Sum_probs=336.9
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
+.+.+|.++|.|++++++ |++ + .+|+++|++.+...+...+..++..++.+++.+++++.++|++++++++..
T Consensus 139 ~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~ 218 (1284)
T 3g5u_A 139 QIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAIS 218 (1284)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999998876 443 2 389999999999887777777888888888888888999999999999888
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT 386 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (788)
|+.+++..++.++..+.....++..++......|.+.++++||+|+.|+.+.+ +|.+..++..+...+........
T Consensus 219 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 294 (1284)
T 3g5u_A 219 PVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE----RYNNNLEEAKRLGIKKAITANIS 294 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH----HHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888899999999999999998875 45555444444333322222111
Q ss_pred H----HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCC
Q 040758 387 S----GYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK 462 (788)
Q Consensus 387 ~----~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~ 462 (788)
. ....+...+.+.++++++..|.+++|.+.+++.++.....++..+...+..+.......+|+.++ ++.++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~---l~~~~~~ 371 (1284)
T 3g5u_A 295 MGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI---IDNKPSI 371 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCcC
Confidence 1 11222223334455677888999999876555444444444444444444555555556666543 3322110
Q ss_pred CCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHH
Q 040758 463 NLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTS 541 (788)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKST 541 (788)
.. .+ .....++...+.|+++||+|+|+++ +.++|+|+||+|++||++||||||||||||
T Consensus 372 ~~----------------~~----~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 372 DS----------------FS----KSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp SS----------------CC----SSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred Cc----------------cc----ccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHH
Confidence 00 00 0001112345789999999999853 357999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 542 Ll~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
|+++|+|+|+|++|+|.+||.|..++ +.+.+|++||||||+|++|++||+|||.++.
T Consensus 432 l~~ll~g~~~~~~G~i~i~g~~i~~~-----------------------~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~ 488 (1284)
T 3g5u_A 432 TVQLMQRLYDPLDGMVSIDGQDIRTI-----------------------NVRYLREIIGVVSQEPVLFATTIAENIRYGR 488 (1284)
T ss_dssp HHHHTTTSSCCSEEEEEETTEEGGGS-----------------------CHHHHHHHEEEECSSCCCCSSCHHHHHHHHC
T ss_pred HHHHHhCCCCCCCeEEEECCEEHHhC-----------------------CHHHHHhheEEEcCCCccCCccHHHHHhcCC
Confidence 99999999999999999965543332 2234567899999999999999999999976
Q ss_pred CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHH
Q 040758 622 WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQR 699 (788)
Q Consensus 622 ~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQR 699 (788)
...+.+++. ++++.+++.+.+. .++|++|. +++|.+||||||||
T Consensus 489 ~~~~~~~~~----------------------------------~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qr 534 (1284)
T 3g5u_A 489 EDVTMDEIE----------------------------------KAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR 534 (1284)
T ss_dssp SSCCHHHHH----------------------------------HHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHH
T ss_pred CCCCHHHHH----------------------------------HHHHHhCcHHHHHhccccccccccCCCCccCHHHHHH
Confidence 544433444 4444444433222 23789996 89999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 700 LAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 700 iaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|+|||||+++|+|||||||||+||+++|+.+++.+++ .|+|+|+||||+++++.||+|++|++|+.
T Consensus 535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602 (1284)
T ss_dssp HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCC
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 9999999999999999999999999999999999875 69999999999999988999999999975
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.8e-61 Score=607.03 Aligned_cols=540 Identities=16% Similarity=0.167 Sum_probs=362.4
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-EQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
+++++++.+++|+. +++.++++++..++...++++++.+++.+...+. .........+.+++++..++..
T Consensus 693 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 763 (1284)
T 3g5u_A 693 FWRILKLNSTEWPY---------FVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISF 763 (1284)
T ss_dssp TTHHHHHHHHTCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888888874 4555555666666777888999999987654332 1111111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC---c----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN---P----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~---~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
+..++...+ ..+ ....+...+|..+|.++.+.++ |++ + .+|+++|++.+...+...+..++..++.
T Consensus 764 ~~~~~~~~~----~~~-~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 838 (1284)
T 3g5u_A 764 ITFFLQGFT----FGK-AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIAN 838 (1284)
T ss_dssp HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 111 2233557788899999987765 553 2 2799999999998776666677777777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
++..+++++.++|++++++++.+|+.+++..+..+.+.......++..........|..+++++||+|+.|+.+.+++.+
T Consensus 839 ~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~ 918 (1284)
T 3g5u_A 839 LGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQ 918 (1284)
T ss_dssp HHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 77777788888999988888887777777766666666655555555556666678999999999999999888765544
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..+...+...+..........+......+...+.+.++++++..|.+++|.+..++.++.....++..+......+....
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 998 (1284)
T 3g5u_A 919 SLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKAT 998 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333332221111111111111111122222223344455667888888776544433322222222221111222233
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLV 522 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~ 522 (788)
...+|+.++.+ .++.... .+ .....+....+.|+++||+|+|+++ +.++|+|+||+
T Consensus 999 ~a~~ri~~~l~---~~~~~~~----------------~~----~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~ 1055 (1284)
T 3g5u_A 999 VSASHIIRIIE---KTPEIDS----------------YS----TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLE 1055 (1284)
T ss_dssp HHHHHHHHHHH---SCCSSSS----------------CC----SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEE
T ss_pred HHHHHHHHHHc---CCCcccc----------------cc----cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEE
Confidence 44455544332 1111000 00 0001112245689999999999753 24699999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
|++||++|||||||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|+||
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~-----------------------~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL-----------------------NVQWLRAQLGIV 1112 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS-----------------------CHHHHTTSCEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC-----------------------CHHHHHhceEEE
Confidence 999999999999999999999999999999999999965543322 223457789999
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
||||.+|++||+|||.++.... ..+++++.++++.+++.....+ ++|
T Consensus 1113 ~Q~~~l~~~ti~eNi~~~~~~~--------------------------------~~~~~~i~~~~~~~~~~~~i~~l~~g 1160 (1284)
T 3g5u_A 1113 SQEPILFDCSIAENIAYGDNSR--------------------------------VVSYEEIVRAAKEANIHQFIDSLPDK 1160 (1284)
T ss_dssp ESSCCCCSSBHHHHHTCCCSSC--------------------------------CCCHHHHHHHHHHHTCHHHHSSTTTG
T ss_pred CCCCccccccHHHHHhccCCCC--------------------------------CCCHHHHHHHHHHhCcHHHHHhCccc
Confidence 9999999999999999975421 1244567777777777665554 489
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|||. +|+|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|++ .|+|+|+||||++++..||||+
T Consensus 1161 ldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~ 1240 (1284)
T 3g5u_A 1161 YNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV 1240 (1284)
T ss_dssp GGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEE
T ss_pred cccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999975 6899999999999998999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 1241 vl~~G~i 1247 (1284)
T 3g5u_A 1241 VIQNGKV 1247 (1284)
T ss_dssp EEETBEE
T ss_pred EEECCEE
Confidence 9999964
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-51 Score=444.46 Aligned_cols=212 Identities=25% Similarity=0.337 Sum_probs=182.4
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.++|.+..++
T Consensus 51 ~~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~-------- 121 (306)
T 3nh6_A 51 KGRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV-------- 121 (306)
T ss_dssp SCCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB--------
T ss_pred CCeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC--------
Confidence 467999999999974 56799999999999999999999999999999999999999999999965543322
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+|++||||||+|.+|++||+|||.|+....
T Consensus 122 ---------------~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~------------------------------- 155 (306)
T 3nh6_A 122 ---------------TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTA------------------------------- 155 (306)
T ss_dssp ---------------CHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTC-------------------------------
T ss_pred ---------------CHHHHhcceEEEecCCccCcccHHHHHHhhcccC-------------------------------
Confidence 1224567799999999999999999999975432
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
+++++.++++.+++..+... ++||++. +++|.+|||||||||+|||||+++|+|||||||||+||+.++..|++.
T Consensus 156 ---~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~ 232 (306)
T 3nh6_A 156 ---GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232 (306)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 23455566666666544433 4789996 899999999999999999999999999999999999999999999999
Q ss_pred HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .++|+|+||||++++..||+|++|++|+.
T Consensus 233 l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~i 266 (306)
T 3nh6_A 233 LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCI 266 (306)
T ss_dssp HHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEE
T ss_pred HHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEE
Confidence 975 58999999999998888999999999975
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-47 Score=401.23 Aligned_cols=211 Identities=23% Similarity=0.308 Sum_probs=177.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~---------- 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA---------- 76 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----------
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC----------
Confidence 5999999999953246799999999999999999999999999999999999999999999964432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+++.||||||++.+|+.|++||+.++...
T Consensus 77 -------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---------------------------------- 109 (247)
T 2ff7_A 77 -------------DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG---------------------------------- 109 (247)
T ss_dssp -------------CHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTT----------------------------------
T ss_pred -------------CHHHHHhcEEEEeCCCccccccHHHHHhccCCC----------------------------------
Confidence 111235679999999999999999999986321
Q ss_pred CChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++....+++ .|+++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.|+
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 189 (247)
T 2ff7_A 110 MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189 (247)
T ss_dssp CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1234566677777776655553 588876 78889999999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+..||++++|++|+.
T Consensus 190 ~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i 221 (247)
T 2ff7_A 190 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 221 (247)
T ss_dssp HHHTTSEEEEECSSGGGGTTSSEEEEEETTEE
T ss_pred HHcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 5 59999999999988878999999999864
No 13
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=6.3e-47 Score=396.29 Aligned_cols=212 Identities=23% Similarity=0.380 Sum_probs=179.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+|+|+ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ml~~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 69 (243)
T 1mv5_A 1 MLSARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI---------- 69 (243)
T ss_dssp CEEEEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT----------
T ss_pred CEEEEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC----------
Confidence 378999999995 246799999999999999999999999999999999999999999999964432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+++.|+||||++.+|+.|++||+.++... .
T Consensus 70 -------------~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~---------------------------------~ 103 (243)
T 1mv5_A 70 -------------SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG---------------------------------D 103 (243)
T ss_dssp -------------SCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS---------------------------------C
T ss_pred -------------CHHHHHhhEEEEcCCCccccccHHHHHhhhccC---------------------------------C
Confidence 112346779999999999999999999986210 0
Q ss_pred CChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++....+++ .|+++. ++.+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1234567778888887766654 688886 77889999999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
+ .|+|+|+|||+++.+..||+|++|++|+..
T Consensus 184 ~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216 (243)
T ss_dssp HHHTTSEEEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred HhcCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 5 589999999999887789999999999753
No 14
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=4.3e-46 Score=395.91 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=168.2
Q ss_pred CCcEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 496 QKLLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.++|+++||+|+|++ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~------- 86 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY------- 86 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-------
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-------
Confidence 357999999999964 125799999999999999999999999999999999999999999999954332111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+...+++.|+||||++.+|+.|++|||.|+......
T Consensus 87 ----------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~---------------------------- 122 (271)
T 2ixe_A 87 ----------------DHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT---------------------------- 122 (271)
T ss_dssp ----------------CHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCC----------------------------
T ss_pred ----------------CHHHHhccEEEEecCCccccccHHHHHhhhcccCCh----------------------------
Confidence 111235679999999999999999999986432110
Q ss_pred CCCCChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.+++.++++..++..++..+ +|+++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+
T Consensus 123 -----~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 197 (271)
T 2ixe_A 123 -----MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197 (271)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 01111222222222222221 245554 56678999999999999999999999999999999999999999999
Q ss_pred HHHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 733 QIEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++.+..||+|++|++|+.
T Consensus 198 ~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i 234 (271)
T 2ixe_A 198 LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSV 234 (271)
T ss_dssp HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEE
T ss_pred HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 9865 28999999999988777999999999864
No 15
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=6.4e-46 Score=392.34 Aligned_cols=211 Identities=22% Similarity=0.349 Sum_probs=173.8
Q ss_pred CcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 497 KLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+.|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.+..+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-------- 86 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-------- 86 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB--------
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc--------
Confidence 4699999999996422 4699999999999999999999999999999999999997 89999954332111
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.|+||||++.+|+.|++||+.++....
T Consensus 87 ---------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~------------------------------- 120 (260)
T 2ghi_A 87 ---------------NRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA------------------------------- 120 (260)
T ss_dssp ---------------CHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTC-------------------------------
T ss_pred ---------------CHHHHhccEEEEcCCCcccccCHHHHHhccCCCC-------------------------------
Confidence 1112356799999999999999999999863211
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
..+++.++++.+++...... ++++++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.
T Consensus 121 ---~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 197 (260)
T 2ghi_A 121 ---TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197 (260)
T ss_dssp ---CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 12345566666666544332 3577775 678889999999999999999999999999999999999999999998
Q ss_pred HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+..||+|++|++|+.
T Consensus 198 l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i 231 (260)
T 2ghi_A 198 VEDLRKNRTLIIIAHRLSTISSAESIILLNKGKI 231 (260)
T ss_dssp HHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEE
T ss_pred HHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 875 58999999999988778999999999864
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-45 Score=384.95 Aligned_cols=215 Identities=22% Similarity=0.329 Sum_probs=166.5
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~------- 73 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD------- 73 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-------
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCC-------
Confidence 388999999996422 36999999999999999999999999999999999999999999999654432221
Q ss_pred hhhhcccccccchhccccc-CcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
...... .++.||||||++.+|.. |++||+.++...... + .
T Consensus 74 -------------~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~----------~---------------~ 115 (235)
T 3tif_A 74 -------------DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYR----------G---------------A 115 (235)
T ss_dssp -------------HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSS----------S---------------C
T ss_pred -------------HHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhc----------c---------------C
Confidence 001111 23469999999999976 999999864210000 0 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......+++.++++.+++.... ....+.+||||||||++|||||+++|++||||||||+||+.++..+.+.
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 116 MSGEERRKRALECLKMAELEERF--------ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187 (235)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGG--------TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChhh--------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00000123466777777665321 1234677999999999999999999999999999999999999999988
Q ss_pred HHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++..++||+|++|++|+.
T Consensus 188 l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i 223 (235)
T 3tif_A 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223 (235)
T ss_dssp HHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 864 39999999999988889999999999864
No 17
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.1e-45 Score=400.67 Aligned_cols=213 Identities=22% Similarity=0.297 Sum_probs=170.5
Q ss_pred CCcEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCc
Q 040758 496 QKLLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
..+|+++||+++|+.+ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~----- 96 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS----- 96 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCC-----
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-----
Confidence 4579999999999642 246899999999999999999999999999999999999999999999654432221
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......|++||||||++.+|.. |++||+.++.... +.
T Consensus 97 ---------------~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~------------~~-------------- 135 (366)
T 3tui_C 97 ---------------ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD------------NT-------------- 135 (366)
T ss_dssp ---------------HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS------------CC--------------
T ss_pred ---------------HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc------------CC--------------
Confidence 11112335679999999999875 9999998752100 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++|+.+++.... ..++.+|||||||||+|||||+.+|++||||||||+||+.+...+.+
T Consensus 136 --~~~~~~~~v~~lL~~vgL~~~~---------~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~ 204 (366)
T 3tui_C 136 --PKDEVKRRVTELLSLVGLGDKH---------DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204 (366)
T ss_dssp --CHHHHHHHHHHHHHHHTCGGGT---------TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHcCCchHh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 0001124577888888876543 34567899999999999999999999999999999999999999998
Q ss_pred HHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++.+ ++||||++|++|+.
T Consensus 205 lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 205 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242 (366)
T ss_dssp HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8864 499999999999876 57999999999975
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=7.1e-45 Score=386.77 Aligned_cols=209 Identities=20% Similarity=0.349 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ +..
T Consensus 7 ~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~---i~~-------- 74 (275)
T 3gfo_A 7 ILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP---IDY-------- 74 (275)
T ss_dssp EEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE---CCC--------
T ss_pred EEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE---CCc--------
Confidence 6999999999964 4569999999999999999999999999999999999999999999995443 310
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ......+++.||||||+| .+|..|++||+.++...... .
T Consensus 75 -------~---~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~----------------------------~ 116 (275)
T 3gfo_A 75 -------S---RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL----------------------------P 116 (275)
T ss_dssp -------S---HHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC----------------------------C
T ss_pred -------c---cccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC----------------------------C
Confidence 0 011123456799999997 57788999999875211000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 117 EDEIRKRVDNALKRTGIEHLKD---------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhc---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0001245677888887765433 3456799999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 188 ~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 188 EMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222 (275)
T ss_dssp HHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEE
T ss_pred HHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 3 499999999998766 67999999999864
No 19
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.6e-45 Score=404.54 Aligned_cols=211 Identities=24% Similarity=0.338 Sum_probs=180.7
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++||+|+|+.+++++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+..+.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~-------- 87 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI-------- 87 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS--------
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC--------
Confidence 35799999999997546789999999999999999999999999999999999998 899999965443222
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.||||||++.+|+.|++||+.+...
T Consensus 88 ---------------~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~--------------------------------- 119 (390)
T 3gd7_A 88 ---------------TLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA--------------------------------- 119 (390)
T ss_dssp ---------------CHHHHHHTEEEESCCCCCCSEEHHHHHCTTCC---------------------------------
T ss_pred ---------------ChHHHhCCEEEEcCCcccCccCHHHHhhhccc---------------------------------
Confidence 11233567999999999999999999975321
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
...+++.++++.+++....++ +..+++. ++.+.+|||||||||||||||+++|++||||||||+||+.++..+++.
T Consensus 120 --~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 120 --HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp --SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 123567778888888766655 4677886 788899999999999999999999999999999999999999999999
Q ss_pred HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .++|+|+|||+++.+..||||++|++|+.
T Consensus 198 l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i 231 (390)
T 3gd7_A 198 LKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231 (390)
T ss_dssp HHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEE
T ss_pred HHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEE
Confidence 976 58999999999988888999999999964
No 20
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-44 Score=374.50 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=162.6
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 46999999999964456899999999999999999999999999999999999999999999831
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|+||||++.+|+.|++||+.++....
T Consensus 70 ---------------------~i~~v~q~~~~~~~tv~enl~~~~~~~-------------------------------- 96 (229)
T 2pze_A 70 ---------------------RISFCSQFSWIMPGTIKENIIFGVSYD-------------------------------- 96 (229)
T ss_dssp ---------------------CEEEECSSCCCCSBCHHHHHHTTSCCC--------------------------------
T ss_pred ---------------------EEEEEecCCcccCCCHHHHhhccCCcC--------------------------------
Confidence 299999999999999999999863210
Q ss_pred CCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.++.+++....+. +.+.++. ++.+.+||||||||++|||||+++|++||||||||+||+.++..+.+.+
T Consensus 97 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 97 ---EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp ---HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred ---hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 0111222333333322222 1344443 6678899999999999999999999999999999999999999999874
Q ss_pred -Hh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 -EA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 174 ~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i 207 (229)
T 2pze_A 174 VCKLMANKTRILVTSKMEHLKKADKILILHEGSS 207 (229)
T ss_dssp CCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEE
T ss_pred HHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEE
Confidence 33 48999999999987778999999999864
No 21
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.7e-45 Score=375.15 Aligned_cols=209 Identities=27% Similarity=0.366 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~y~--~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------- 72 (224)
T 2pcj_A 4 ILRAENIKKVIR--GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN--------- 72 (224)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSC---------
T ss_pred EEEEEeEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCC---------
Confidence 599999999996 367999999999999999999999999999999999999999999999654322110
Q ss_pred hhcccccccchhcccccCc-ceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNS-RGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.......+ +.|+||||++.+|. .|++||+.++.... +. .
T Consensus 73 -----------~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~------------~~----------------~ 113 (224)
T 2pcj_A 73 -----------EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM------------GK----------------P 113 (224)
T ss_dssp -----------HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT------------TC----------------C
T ss_pred -----------HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc------------CC----------------C
Confidence 00001122 56999999999886 49999998742100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 184 (224)
T 2pcj_A 114 KKEAKERGEYLLSELGLGDKLS---------RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184 (224)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTT---------CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0001245677888887754432 3456799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ +|+|+|+|||+++.+++||++++|++|+.
T Consensus 185 ~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i 217 (224)
T 2pcj_A 185 KINEGGTSIVMVTHERELAELTHRTLEMKDGKV 217 (224)
T ss_dssp HHHHTTCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 4 58999999999887788999999999864
No 22
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.8e-44 Score=374.75 Aligned_cols=197 Identities=24% Similarity=0.298 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 4899999999964346799999999999999999999999999999999999999999999841
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.|+||||++.+++.|++||+.++.....
T Consensus 67 --------------------~i~~v~Q~~~~~~~tv~enl~~~~~~~~-------------------------------- 94 (237)
T 2cbz_A 67 --------------------SVAYVPQQAWIQNDSLRENILFGCQLEE-------------------------------- 94 (237)
T ss_dssp --------------------CEEEECSSCCCCSEEHHHHHHTTSCCCT--------------------------------
T ss_pred --------------------EEEEEcCCCcCCCcCHHHHhhCccccCH--------------------------------
Confidence 2899999999999999999998632100
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
+...++++.+++...... +.|+++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.|.
T Consensus 95 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 95 ---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp ---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 111122222222211111 1344543 66788999999999999999999999999999999999999999999883
Q ss_pred ---h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 ---A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ---~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+..||++++|++|+.
T Consensus 172 ~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 172 GPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKI 206 (237)
T ss_dssp STTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEE
T ss_pred HHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEE
Confidence 2 58999999999988888999999999864
No 23
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.4e-44 Score=393.16 Aligned_cols=208 Identities=26% Similarity=0.365 Sum_probs=168.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 4 ~l~i~~ls~~y~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~--------- 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQ--NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN--------- 72 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSS---------
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccc---------
Confidence 599999999995 567999999999999999999999999999999999999999999999654321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+++||||||++.+|. .|++|||.|+...... ..
T Consensus 73 ------------~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~----------------------------~~ 112 (359)
T 3fvq_A 73 ------------TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG----------------------------RT 112 (359)
T ss_dssp ------------CBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC----------------------------CS
T ss_pred ------------cccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC----------------------------Ch
Confidence 011123567999999999996 5999999997421100 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
....+++.++++.+++....+ .++.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|.
T Consensus 113 ~~~~~~v~~~l~~~gL~~~~~---------r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 113 AQERQRIEAMLELTGISELAG---------RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp HHHHHHHHHHHHHHTCGGGTT---------SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011245778888888765443 3466799999999999999999999999999999999999999987553
Q ss_pred ---hcCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 ---AAGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ---~~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+.|+|+|+|||+++. ..+||||++|++|+.
T Consensus 184 ~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i 217 (359)
T 3fvq_A 184 ALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217 (359)
T ss_dssp HHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEE
Confidence 359999999999865 478999999999964
No 24
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-44 Score=374.90 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 6 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------- 74 (240)
T 1ji0_A 6 VLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP--------- 74 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred eEEEEeEEEEEC--CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------
Confidence 699999999996 467999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.||||||++.+|.. |++||+.++.... . ..
T Consensus 75 -------------~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~----------------------------~~ 112 (240)
T 1ji0_A 75 -------------AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-K----------------------------DK 112 (240)
T ss_dssp -------------HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-C----------------------------CS
T ss_pred -------------HHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-C----------------------------CH
Confidence 000123459999999999986 9999998852110 0 00
Q ss_pred CCChHHHHHHHHhcc-cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVK-LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~-l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+.+.+.++.++ +.... +..+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~---------~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERL---------KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTT---------TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 001134556677663 54332 34467899999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++. .++||++++|++|+.
T Consensus 184 ~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 217 (240)
T 1ji0_A 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQI 217 (240)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 58999999999864 578999999999864
No 25
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.9e-44 Score=379.18 Aligned_cols=220 Identities=18% Similarity=0.313 Sum_probs=166.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 7 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--------- 75 (257)
T 1g6h_A 7 ILRTENIVKYFG--EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE--------- 75 (257)
T ss_dssp EEEEEEEEEEET--TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred EEEEeeeEEEEC--CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 699999999995 467999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.||||||++.+|. .|++||+.++...... +. + ... +........
T Consensus 76 -------------~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----------~~--~-~~~--~~~~~~~~~ 127 (257)
T 1g6h_A 76 -------------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGE----------SP--L-NSL--FYKKWIPKE 127 (257)
T ss_dssp -------------HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTS----------CH--H-HHH--HHCSSCCCC
T ss_pred -------------HHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhcc----------Cc--c-ccc--ccccccCCH
Confidence 01122456999999999886 5999999875211000 00 0 000 000000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... ...+.+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus 128 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 128 EEMVEKAFKILEFLKLSHLY---------DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp HHHHHHHHHHHHHTTCGGGT---------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhh---------CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 00123566788887775433 234667999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 199 l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp HHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred HHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 489999999998765 68999999999864
No 26
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.4e-44 Score=380.18 Aligned_cols=205 Identities=24% Similarity=0.309 Sum_probs=167.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+....
T Consensus 10 ~~l~~~~l~~~~~--~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~--------- 78 (266)
T 4g1u_C 10 ALLEASHLHYHVQ--QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW--------- 78 (266)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTS---------
T ss_pred ceEEEEeEEEEeC--CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC---------
Confidence 3699999999995 56899999999999999999999999999999999999999999999965432221
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.++|++|++.+ |..|++||+.++.....
T Consensus 79 --------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~------------------------------ 114 (266)
T 4g1u_C 79 --------------QPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG------------------------------ 114 (266)
T ss_dssp --------------CHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC------------------------------
T ss_pred --------------CHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC------------------------------
Confidence 111234569999999987 46799999988532100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS------KPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~------~p~iLiLDEpTSaLD~~se~~ 729 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||++ +|++||||||||+||+.++..
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~ 185 (266)
T 4g1u_C 115 GSQDRQALQQVMAQTDCLALAQ---------RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQH 185 (266)
T ss_dssp STTHHHHHHHHHHHTTCSTTTT---------SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChhHhc---------CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHH
Confidence 0112346778888887764433 2356799999999999999999 999999999999999999999
Q ss_pred HHHHHHh---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|++ + ++|+|+|||+++.+ .+||+|++|++|+.
T Consensus 186 i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 186 TLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKL 226 (266)
T ss_dssp HHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 9988764 3 57999999998765 58999999999865
No 27
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.1e-44 Score=379.58 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ..
T Consensus 24 ~l~i~~l~~~y~--~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~--------- 91 (263)
T 2olj_A 24 MIDVHQLKKSFG--SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AK--------- 91 (263)
T ss_dssp SEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-ST---------
T ss_pred eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Cc---------
Confidence 699999999995 467999999999999999999999999999999999999999999999654321 00
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+++.||||||++.+|.. |++||+.++.... .+. ..
T Consensus 92 -----------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~-----------~~~----------------~~ 133 (263)
T 2olj_A 92 -----------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV-----------RKW----------------PR 133 (263)
T ss_dssp -----------TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-----------SCC----------------CH
T ss_pred -----------cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH-----------cCC----------------CH
Confidence 00111234679999999999876 9999998741000 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|++
T Consensus 134 ~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 134 EKAEAKAMELLDKVGLKDKAH---------AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHhc---------CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 001245667888887764433 34567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 205 l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 205 LANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237 (263)
T ss_dssp HHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 58999999999864
No 28
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.7e-44 Score=393.95 Aligned_cols=204 Identities=26% Similarity=0.361 Sum_probs=167.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~~~~l~~~yg--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~---------- 70 (381)
T 3rlf_A 3 SVQLQNVTKAWG--EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT---------- 70 (381)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC----------
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC----------
Confidence 489999999995 56799999999999999999999999999999999999999999999965432221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|.. |++|||.|+.... +. ..
T Consensus 71 -------------~--~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~------------~~----------------~~ 107 (381)
T 3rlf_A 71 -------------P--PAERGVGMVFQSYALYPHLSVAENMSFGLKLA------------GA----------------KK 107 (381)
T ss_dssp -------------C--GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT------------TC----------------CH
T ss_pred -------------C--HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc------------CC----------------CH
Confidence 1 123569999999999965 9999999852110 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ .++.+|||||||||+|||||+.+|++||||||||+||+.++..+.+.|++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~---------r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLD---------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhc---------CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 011245778888888765433 34667999999999999999999999999999999999999999888753
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||||++|++|+.
T Consensus 179 l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp HHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 49999999999865 578999999999964
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-43 Score=373.64 Aligned_cols=204 Identities=26% Similarity=0.355 Sum_probs=165.9
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+|+++||+++|+.++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~~~~------ 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKK------ 72 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT---EECC------
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC---EECc------
Confidence 489999999996223 5799999999999999999999999999999999999999999999954 3331
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.. .+++.||||||+| .++..|++||+.++.... .
T Consensus 73 ----------------~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~-------------------------- 108 (266)
T 2yz2_A 73 ----------------GY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-Y-------------------------- 108 (266)
T ss_dssp ----------------HH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-C--------------------------
T ss_pred ----------------hH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-C--------------------------
Confidence 00 2346699999996 567789999998753210 0
Q ss_pred cCCCCCChHHHHHHHHhcccc--cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG--YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+++.++++.+++. ...++ ...+||||||||++|||||+++|++||||||||+||+.++..+
T Consensus 109 --~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 177 (266)
T 2yz2_A 109 --PDRDPVPLVKKAMEFVGLDFDSFKDR---------VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 177 (266)
T ss_dssp --TTSCSHHHHHHHHHHTTCCHHHHTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHcCcCCcccccC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHH
Confidence 0011235677888888776 54332 3567999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 178 ~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 178 LRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216 (266)
T ss_dssp HHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 998864 489999999998766 57999999999864
No 30
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-44 Score=377.82 Aligned_cols=220 Identities=21% Similarity=0.263 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..... ...
T Consensus 6 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-~~~----- 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVR-DKD----- 77 (262)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEE-CTT-----
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccc-ccc-----
Confidence 599999999995 467999999999999999999999999999999999999999999999654321000 000
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. ..+.. .......++.||||||++.+|.. |++||+.++.... .+. ..
T Consensus 78 ~~-~~~~~---~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~-----------~~~----------------~~ 126 (262)
T 1b0u_A 78 GQ-LKVAD---KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-----------LGL----------------SK 126 (262)
T ss_dssp SS-EEESC---HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-----------TCC----------------CH
T ss_pred cc-ccccC---hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh-----------cCC----------------CH
Confidence 00 00000 00011234679999999999876 9999998741000 000 00
Q ss_pred CCChHHHHHHHHhcccccc-cccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYI-LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~-~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++.++++.+++... .+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+
T Consensus 127 ~~~~~~~~~~l~~~~L~~~~~~---------~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~ 197 (262)
T 1b0u_A 127 HDARERALKYLAKVGIDERAQG---------KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197 (262)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHT---------SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhc---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0012456778888877644 33 2356799999999999999999999999999999999999999998875
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 198 ~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 198 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp HHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 589999999998765 58999999999864
No 31
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-43 Score=373.27 Aligned_cols=207 Identities=24% Similarity=0.296 Sum_probs=166.3
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ++.
T Consensus 13 ~~~l~i~~l~~~y~--~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~---~~~------- 80 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK---NVV------- 80 (256)
T ss_dssp -CCEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE---ETT-------
T ss_pred CCeEEEEEEEEEEC--CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE---ECC-------
Confidence 35799999999995 467999999999999999999999999999999999999999999999543 331
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. .....++.||||||++.+|.. |++||+.++.... +.
T Consensus 81 ----------~----~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~------------~~---------------- 118 (256)
T 1vpl_A 81 ----------E----EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY------------AS---------------- 118 (256)
T ss_dssp ----------T----CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH------------CC----------------
T ss_pred ----------c----cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc------------CC----------------
Confidence 0 001234669999999999876 9999997731000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 189 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIK---------DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 189 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGG---------SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCchHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 00001235667788887764433 235679999999999999999999999999999999999999999888
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|++||+++.+ .+||++++|++|+.
T Consensus 190 ~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 190 KQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 224 (256)
T ss_dssp HHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEE
T ss_pred HHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEE
Confidence 64 589999999998765 56999999999864
No 32
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=3.2e-43 Score=386.38 Aligned_cols=204 Identities=24% Similarity=0.347 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (359)
T 2yyz_A 3 SIRVVNLKKYFG--KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI---------- 70 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC----------
Confidence 489999999995 46799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|.. |++||+.|+....... .
T Consensus 71 -------------~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------------------------~ 107 (359)
T 2yyz_A 71 -------------P--PKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS----------------------------K 107 (359)
T ss_dssp -------------C--GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH----------------------------H
T ss_pred -------------C--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------------------------H
Confidence 1 124569999999999964 9999999863211000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....++ ++.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDR---------KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0012467788888887654433 3567999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+.+. ...||+|++|++|+.
T Consensus 179 l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 179 LQQELGITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 39999999999865 478999999999964
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-43 Score=377.31 Aligned_cols=211 Identities=19% Similarity=0.282 Sum_probs=165.3
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCc--ccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE--ETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~--~i~~~~~~~ 574 (788)
.+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ..
T Consensus 20 ~~l~~~~l~~~y~--~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~------- 90 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ--GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY------- 90 (279)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C-------
T ss_pred ceEEEEeEEEEEC--CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC-------
Confidence 3699999999995 467999999999999999999999999999999999999999999999644321 11
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccccc-CCC--CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLG--SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~--Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+...+++.||||||++.+ |.. |++||+.++..... +.
T Consensus 91 ----------------~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~-----------~~------------- 130 (279)
T 2ihy_A 91 ----------------SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-----------GV------------- 130 (279)
T ss_dssp ----------------CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC------------------------------
T ss_pred ----------------CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc-----------cc-------------
Confidence 011235679999999875 444 99999988632100 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.........+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+++.+.
T Consensus 131 ~~~~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~ 201 (279)
T 2ihy_A 131 YQDIDDEIRNEAHQLLKLVGMSAKAQ---------QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201 (279)
T ss_dssp ---CCHHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHcCChhHhc---------CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH
Confidence 00000001245667788887754432 345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEE--EEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITY--ISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~Tv--I~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ +|+|+ |+|||+++.+ ++||+|++|++|+.
T Consensus 202 ~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i 241 (279)
T 2ihy_A 202 SILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQS 241 (279)
T ss_dssp HHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEE
T ss_pred HHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 98864 48999 9999998765 68999999999864
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.5e-43 Score=384.42 Aligned_cols=207 Identities=26% Similarity=0.339 Sum_probs=167.8
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 12 ~~~l~~~~l~~~y~g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-------- 82 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL-------- 82 (355)
T ss_dssp CEEEEEEEEEECCTT-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC--------
T ss_pred CceEEEEEEEEEEcC-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC--------
Confidence 347999999999942 45799999999999999999999999999999999999999999999954332111
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...++.||||||++.+|.. |++|||.|+.... +.
T Consensus 83 -----------------~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~------------~~---------------- 117 (355)
T 1z47_A 83 -----------------PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK------------RV---------------- 117 (355)
T ss_dssp -----------------CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT------------TC----------------
T ss_pred -----------------ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc------------CC----------------
Confidence 1224679999999999974 9999998852100 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++....++ .+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 188 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANR---------FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 000012457788888887654433 35679999999999999999999999999999999999999999887
Q ss_pred Hh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 189 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 189 RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 54 39999999999865 478999999999864
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-43 Score=366.09 Aligned_cols=198 Identities=22% Similarity=0.318 Sum_probs=162.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|. ++.
T Consensus 2 l~~~~l~~~y~--~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~---------- 63 (240)
T 2onk_A 2 FLKVRAEKRLG--N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA---DIT---------- 63 (240)
T ss_dssp CEEEEEEEEET--T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE---ECT----------
T ss_pred EEEEEEEEEeC--C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ECC----------
Confidence 78999999995 2 59999999999 999999999999999999999999999999999543 331
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.||||||++.+|.. |++||+.++...... .
T Consensus 64 ------------~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~------------------------------~ 101 (240)
T 2onk_A 64 ------------PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER------------------------------V 101 (240)
T ss_dssp ------------TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH------------------------------H
T ss_pred ------------cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC------------------------------c
Confidence 011235679999999999876 999999886321000 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ..+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLLD---------RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTT---------CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 01245677888887754332 33567999999999999999999999999999999999999999988854
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. ..+||++++|++|+.
T Consensus 173 ~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i 205 (240)
T 2onk_A 173 QREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205 (240)
T ss_dssp HHHHTCCEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999875 578999999999864
No 36
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1e-42 Score=384.15 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=161.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 11 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 78 (372)
T 1v43_A 11 EVKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---------- 78 (372)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred eEEEEEEEEEEC--CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC----------
Confidence 599999999995 46799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|. .|++|||.|+....... .
T Consensus 79 -------------~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------------------------~ 115 (372)
T 1v43_A 79 -------------P--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP----------------------------K 115 (372)
T ss_dssp -------------C--GGGGTEEEEEC------CCCHHHHHHTTCC--CCC----------------------------H
T ss_pred -------------C--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------------------------H
Confidence 1 12356999999999986 59999999974211000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ .++.+||||||||+||||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~---------r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLN---------RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 001245778888888765443 34678999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 187 l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 187 LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 39999999999865 478999999999964
No 37
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.9e-43 Score=384.73 Aligned_cols=204 Identities=27% Similarity=0.397 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (362)
T 2it1_A 3 EIKLENIVKKFG--NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL---------- 70 (362)
T ss_dssp CEEEEEEEEESS--SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 489999999995 46799999999999999999999999999999999999999999999964432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|.. |++||+.|+.... +. ..
T Consensus 71 -------------~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~------------~~----------------~~ 107 (362)
T 2it1_A 71 -------------P--PKDRNVGLVFQNWALYPHMTVYKNIAFPLELR------------KA----------------PR 107 (362)
T ss_dssp -------------C--GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT------------TC----------------CH
T ss_pred -------------C--HhHCcEEEEecCcccCCCCCHHHHHHHHHHhc------------CC----------------CH
Confidence 1 123569999999999964 9999998852100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.++++...++ .+.+|||||||||||||||+.+|++||||||||+||+.++..+.+.|++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNR---------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 0012457788888887654433 3567999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 179 l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 179 LQKELGITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 39999999999865 578999999999964
No 38
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=4.7e-43 Score=383.83 Aligned_cols=200 Identities=27% Similarity=0.398 Sum_probs=165.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 1 ml~~~~l~~~y~--~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---------- 67 (348)
T 3d31_A 1 MIEIESLSRKWK--NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL---------- 67 (348)
T ss_dssp CEEEEEEEEECS--SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred CEEEEEEEEEEC--CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC----------
Confidence 378999999995 35 99999999999999999999999999999999999999999999954432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...+++||||||++.+|.. |++||+.|+.... +
T Consensus 68 ---------------~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~------------~------------------- 101 (348)
T 3d31_A 68 ---------------SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK------------K------------------- 101 (348)
T ss_dssp ---------------CHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH------------C-------------------
T ss_pred ---------------chhhCcEEEEecCcccCCCCCHHHHHHHHHHHc------------C-------------------
Confidence 1124569999999999975 9999998852100 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.++++...+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~---------~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLD---------RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTT---------SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCchHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 001256778888888765433 33567999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+.+. ..+||+|++|++|+.
T Consensus 173 l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i 206 (348)
T 3d31_A 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206 (348)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCE
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999864 578999999999964
No 39
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.7e-43 Score=383.81 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCcc--ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKAT--LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~--vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+ +++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 3 ~l~i~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~------- 73 (353)
T 1oxx_K 3 RIIVKNVSKVFK--KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG------- 73 (353)
T ss_dssp CEEEEEEEEEEG--GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT-------
T ss_pred EEEEEeEEEEEC--CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc-------
Confidence 489999999995 456 999999999999999999999999999999999999999999999543321100
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.......+++||||||++.+|.. |++||+.|+.......
T Consensus 74 -------------~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~--------------------------- 113 (353)
T 1oxx_K 74 -------------KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMS--------------------------- 113 (353)
T ss_dssp -------------EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCC---------------------------
T ss_pred -------------cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC---------------------------
Confidence 00011235679999999999975 9999999863210000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.++++.++++...++ .+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 114 -~~~~~~~v~~~l~~~~L~~~~~~---------~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 114 -KEEIRKRVEEVAKILDIHHVLNH---------FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp -HHHHHHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 00012457788888887654433 35679999999999999999999999999999999999999999887
Q ss_pred Hh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 184 ~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219 (353)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 54 39999999999865 478999999999864
No 40
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.8e-42 Score=361.96 Aligned_cols=197 Identities=24% Similarity=0.308 Sum_probs=161.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 4 ~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------------------ 64 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------------------ 64 (253)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------------------
T ss_pred eEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------------------
Confidence 5999999999962 357999999999999999999999999999999999999999999974
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
++.||||||++.+| ..|++||+.++..... +.. ....
T Consensus 65 ------------------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-----------~~~-------------~~~~ 102 (253)
T 2nq2_C 65 ------------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHI-----------NTF-------------AKPK 102 (253)
T ss_dssp ------------------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGS-----------CTT-------------CCCC
T ss_pred ------------------eccEEEEcCCCccCCCCCHHHHHHHhhhhhc-----------ccc-------------cCCC
Confidence 23599999999888 5699999988521100 000 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ..+.+||||||||++|||||+++|++||||||||+||+.+...+.+.|++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 103 SHDYQVAMQALDYLNLTHLAK---------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011245677888887765433 23567999999999999999999999999999999999999999988864
Q ss_pred ---c-CCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---A-GITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+ |+|+|++||+++.+ ++||++++|++|+
T Consensus 174 l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 174 LAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 3 89999999998765 7899999999985
No 41
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.6e-42 Score=383.19 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~--------- 71 (372)
T 1g29_1 3 GVRLVDVWKVFG--EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE--------- 71 (372)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGG---------
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcccc---------
Confidence 489999999995 467999999999999999999999999999999999999999999999544321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
........+++||||||++.+|. .|++||+.|+.... +. ..
T Consensus 72 ----------~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~------------~~----------------~~ 113 (372)
T 1g29_1 72 ----------KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR------------KV----------------PR 113 (372)
T ss_dssp ----------GTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT------------TC----------------CH
T ss_pred ----------ccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc------------CC----------------CH
Confidence 00001122467999999999986 59999998852100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....++ .+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 114 ~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 114 QEIDQRVREVAELLGLTELLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHHHHHHHHHHHTCGGGTTC---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 0012456778888887654433 3567999999999999999999999999999999999999999888754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 185 l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 218 (372)
T 1g29_1 185 LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218 (372)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEE
Confidence 49999999999865 468999999999964
No 42
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.4e-42 Score=362.45 Aligned_cols=196 Identities=25% Similarity=0.304 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~---------- 66 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAW---------- 66 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGS----------
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcC----------
Confidence 5899999986 5899999999999999999999999999999999999999 9999954332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+...+++.++||||++.+|.. |++||+.++....
T Consensus 67 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------------------------------- 101 (249)
T 2qi9_C 67 -------------SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-------------------------------- 101 (249)
T ss_dssp -------------CHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST--------------------------------
T ss_pred -------------CHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC--------------------------------
Confidence 111235679999999998865 9999998863110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC-------EEEEecCCCCCCHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ-------IVLLDESTSALDEANEAH 729 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~-------iLiLDEpTSaLD~~se~~ 729 (788)
...+++.++++.+++....+ ..+.+||||||||++|||||+++|+ +||||||||+||+.++..
T Consensus 102 -~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~ 171 (249)
T 2qi9_C 102 -TRTELLNDVAGALALDDKLG---------RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 171 (249)
T ss_dssp -TCHHHHHHHHHHTTCGGGTT---------SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHH
T ss_pred -CcHHHHHHHHHHcCChhHhc---------CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHH
Confidence 01355677888887764433 3456799999999999999999999 999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|++ +|+|+|++||+++.+ .+||++++|++|+.
T Consensus 172 l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 211 (249)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9998864 489999999998876 78999999999864
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-42 Score=365.66 Aligned_cols=210 Identities=24% Similarity=0.323 Sum_probs=158.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+..+..
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~------- 73 (250)
T 2d2e_A 3 QLEIRDLWASID--GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS------- 73 (250)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC-------
T ss_pred eEEEEeEEEEEC--CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC-------
Confidence 589999999995 46799999999999999999999999999999999999 8999999999654322110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....+..++||||++.+|.. |++||+.++.... .+.. .
T Consensus 74 ---------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----------~~~~--------------~ 113 (250)
T 2d2e_A 74 ---------------PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAK-----------LGRE--------------V 113 (250)
T ss_dssp ---------------HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHH-----------HTSC--------------C
T ss_pred ---------------HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhh-----------cccc--------------C
Confidence 000113459999999999875 9999997631100 0000 0
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCC-CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSV-LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~-LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++. ...+ ....+ ||||||||++|||||+++|++||||||||+||+.++..+.+
T Consensus 114 ~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 184 (250)
T 2d2e_A 114 GVAEFWTKVKKALELLDWDESYLS---------RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184 (250)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGGG---------SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCChhHhc---------CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 0000123466778877763 3322 23456 99999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++.+. . ||++++|++|+.
T Consensus 185 ~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 185 GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEE
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEE
Confidence 8865 4899999999998765 5 599999999864
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=6.4e-42 Score=363.11 Aligned_cols=215 Identities=25% Similarity=0.316 Sum_probs=162.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.+|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+..+..
T Consensus 19 ~~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~------ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS------ 90 (267)
T ss_dssp -CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC------
T ss_pred ceEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC------
Confidence 4699999999995 46799999999999999999999999999999999999 5799999999644321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....+..|+||||++.+|.. |+.||+.++... . ....+. ..
T Consensus 91 ----------------~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~--~------~~~~~~-------------~~ 133 (267)
T 2zu0_C 91 ----------------PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA--V------RSYRGQ-------------ET 133 (267)
T ss_dssp ----------------HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHH--H------HHGGGC-------------CC
T ss_pred ----------------HHHHhhCCEEEEccCccccccccHHHHHHHHHHh--h------hhhhcc-------------cc
Confidence 000113459999999998876 999998653100 0 000000 00
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCC-CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSS-VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~-~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.++++.+++. ... ..... +|||||||||+|||||+++|++||||||||+||+.+++.+.
T Consensus 134 ~~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~ 204 (267)
T 2zu0_C 134 LDRFDFQDLMEEKIALLKMPEDLL---------TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 204 (267)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTTT---------TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCChhHh---------cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 00000123466778877764 222 22333 59999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+. . ||++++|++|+.
T Consensus 205 ~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 205 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp HHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred HHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 99875 4899999999998765 3 899999999864
No 45
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-41 Score=347.12 Aligned_cols=194 Identities=24% Similarity=0.353 Sum_probs=159.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ++
T Consensus 9 ~~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~---~~--------- 73 (214)
T 1sgw_A 9 SKLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV---PI--------- 73 (214)
T ss_dssp CEEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE---EG---------
T ss_pred ceEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE---Eh---------
Confidence 4799999999995 4 7999999999999999999999999999999999999999999999532 22
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ..++.|+||||++.+|.. |++||+.++... . + .
T Consensus 74 --------~--------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~-------------------------~--~-~- 108 (214)
T 1sgw_A 74 --------T--------KVKGKIFFLPEEIIVPRKISVEDYLKAVASL-------------------------Y--G-V- 108 (214)
T ss_dssp --------G--------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHH-------------------------T--T-C-
T ss_pred --------h--------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh-------------------------c--C-C-
Confidence 0 124669999999999876 999999774100 0 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++.++++.++++.. + ..+.+||||||||++|||||+++|++||||||||+||+.+...+.+.|+
T Consensus 109 -~~~~~~~~~~l~~~gl~~~-~---------~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 177 (214)
T 1sgw_A 109 -KVNKNEIMDALESVEVLDL-K---------KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177 (214)
T ss_dssp -CCCHHHHHHHHHHTTCCCT-T---------SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred -chHHHHHHHHHHHcCCCcC-C---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 1124567788888876543 2 3356799999999999999999999999999999999999999998886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEc
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRIS 761 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~ 761 (788)
+ .|+|+|++||+++.+ ..||+++.++
T Consensus 178 ~~~~~g~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 178 EILKEKGIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEeC
Confidence 4 489999999998765 5688876543
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.9e-41 Score=356.91 Aligned_cols=198 Identities=23% Similarity=0.283 Sum_probs=162.4
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+++ .+++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|. ++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~---~~~------- 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGM---EVR------- 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTE---EGG-------
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCE---ECc-------
Confidence 37899999999521 1579999999999 9999999999999999999999999 99999999533 331
Q ss_pred hhhhcccccccchhcccccCcceEE-EEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVF-FLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~-~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. . .. ++.++ ||||++.+ ..|++||+.++... .
T Consensus 69 -------------~-~-~~-~~~i~~~v~Q~~~l-~~tv~enl~~~~~~----------------------------~-- 101 (263)
T 2pjz_A 69 -------------K-I-RN-YIRYSTNLPEAYEI-GVTVNDIVYLYEEL----------------------------K-- 101 (263)
T ss_dssp -------------G-C-SC-CTTEEECCGGGSCT-TSBHHHHHHHHHHH----------------------------T--
T ss_pred -------------c-h-HH-hhheEEEeCCCCcc-CCcHHHHHHHhhhh----------------------------c--
Confidence 0 0 12 56799 99999998 88999999763100 0
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
....+++.++++.+++. ...+ .++.+||||||||++|||||+++|++||||||||+||+.+++.+.+.
T Consensus 102 --~~~~~~~~~~l~~~gl~~~~~~---------~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 170 (263)
T 2pjz_A 102 --GLDRDLFLEMLKALKLGEEILR---------RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170 (263)
T ss_dssp --CCCHHHHHHHHHHTTCCGGGGG---------SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHcCCChhHhc---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHH
Confidence 11245677788887765 4332 34667999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCC-EEEEEccCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHK-RVLRISTVDQ 765 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D-~Ilvl~~g~~ 765 (788)
|++...|+|++||+++.+ +.|| ++++|++|+.
T Consensus 171 L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i 204 (263)
T 2pjz_A 171 IKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRL 204 (263)
T ss_dssp HHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEE
T ss_pred HHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEE
Confidence 987433999999998765 6899 9999999864
No 47
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4.4e-41 Score=360.22 Aligned_cols=193 Identities=22% Similarity=0.314 Sum_probs=144.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||+|.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 99 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------------
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------
Confidence 469999999863 4699999999999999999999999999999999999999999999731
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|+||||++.+|++|++||+. +... .
T Consensus 100 ---------------------~i~~v~Q~~~l~~~tv~enl~-~~~~-~------------------------------- 125 (290)
T 2bbs_A 100 ---------------------RISFCSQNSWIMPGTIKENII-GVSY-D------------------------------- 125 (290)
T ss_dssp ---------------------CEEEECSSCCCCSSBHHHHHH-TTCC-C-------------------------------
T ss_pred ---------------------EEEEEeCCCccCcccHHHHhh-Cccc-c-------------------------------
Confidence 299999999999999999997 4211 0
Q ss_pred CCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
...+.+.++.+++.....+ +.++++. ++.+.+||||||||++|||||+++|++||||||||+||+.++..+.+.+
T Consensus 126 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 126 ---EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp ---HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred ---hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0111122233333222222 2344443 5677899999999999999999999999999999999999999999874
Q ss_pred -Hh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 -EA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++.+..||++++|++|+.
T Consensus 203 l~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236 (290)
T ss_dssp CCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEE
T ss_pred HHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeE
Confidence 33 58999999999988778999999999864
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-34 Score=333.09 Aligned_cols=189 Identities=20% Similarity=0.202 Sum_probs=152.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|++.||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~---------------- 328 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE---------------- 328 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESS----------------
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC----------------
Confidence 36899999999952 56888999999999999999999999999999999999999999852
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...++|+||++.. +..|+++|+.+.....
T Consensus 329 -------------------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------------- 358 (538)
T 3ozx_A 329 -------------------KQILSYKPQRIFPNYDGTVQQYLENASKDA------------------------------- 358 (538)
T ss_dssp -------------------CCCEEEECSSCCCCCSSBHHHHHHHHCSST-------------------------------
T ss_pred -------------------CeeeEeechhcccccCCCHHHHHHHhhhhc-------------------------------
Confidence 1248999999765 3679999986521100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.......+.++++.+++.... ...+.+|||||||||+|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 359 ~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~ 429 (538)
T 3ozx_A 359 LSTSSWFFEEVTKRLNLHRLL---------ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK 429 (538)
T ss_dssp TCTTSHHHHHTTTTTTGGGCT---------TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCHHHh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 000113345556666655332 33467799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
+ .|+|+|+|||+++.+ .+||||++|+++
T Consensus 430 ~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 430 RVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4 489999999998765 579999999864
No 49
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.7e-34 Score=345.27 Aligned_cols=235 Identities=17% Similarity=0.277 Sum_probs=160.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-------------- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-------------- 735 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--------------
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--------------
Confidence 369999999999743467999999999999999999999999999999999999999999998421
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-----CCCCHHHHhcCCCCc-cccchhhHHH-----------------
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-----VLGSLRQQLIYPTWT-EEVKPASDAA----------------- 633 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-----f~~Ti~eNi~~~~~~-~~~~~~~~aa----------------- 633 (788)
..|+|++|++.. ++.|+++++.+.-.. .+.+....+.
T Consensus 736 --------------------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~ 795 (986)
T 2iw3_A 736 --------------------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKI 795 (986)
T ss_dssp --------------------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEE
T ss_pred --------------------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhccccc
Confidence 126777776531 234666665421000 0000000000
Q ss_pred -----------------------------HhcCC----ccchhhh-----------hhh----------h--hhccCCCC
Q 040758 634 -----------------------------KSAGL----VPFLTSA-----------QKL----------E--NVGRKSSK 657 (788)
Q Consensus 634 -----------------------------~~~~~----~~~i~~~-----------~~~----------~--~~~~~~~~ 657 (788)
++..+ .+.++.. .++ + ..+ ....
T Consensus 796 ~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g-~~~~ 874 (986)
T 2iw3_A 796 EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASG-QFRP 874 (986)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred ccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhc-ccch
Confidence 00000 0000000 000 0 000 0112
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA 737 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~ 737 (788)
...+++.+.|+.+++..... ....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.
T Consensus 875 ~~~~~i~~~Le~lGL~~~~~-------~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~ 947 (986)
T 2iw3_A 875 LTRKEIEEHCSMLGLDPEIV-------SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947 (986)
T ss_dssp CCHHHHHHHHHHTTCCHHHH-------HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHcCCCchhh-------cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh
Confidence 23466788888887753110 12235679999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCCeE
Q 040758 738 GITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSNWK 773 (788)
Q Consensus 738 g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~~~ 773 (788)
+.|+|+|||+++.+ .+||++++|++|+....+.||.
T Consensus 948 g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~~ 984 (986)
T 2iw3_A 948 EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984 (986)
T ss_dssp SSEEEEECSCHHHHTTTCCEEECCBTTBCCC------
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCccc
Confidence 88999999998765 6899999999999877677884
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4e-34 Score=331.26 Aligned_cols=186 Identities=24% Similarity=0.239 Sum_probs=150.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----------------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----------------- 345 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------------
T ss_pred eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------------
Confidence 36999999999952 4689999999999999999999999999999999999999999964
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...||||||++.. +..|+.||+...... ..
T Consensus 346 -------------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~--------------------------~~---- 376 (538)
T 1yqt_A 346 -------------------DLTVAYKPQYIKADYEGTVYELLSKIDAS--------------------------KL---- 376 (538)
T ss_dssp -------------------CCCEEEECSSCCCCCSSBHHHHHHHHHHH--------------------------HH----
T ss_pred -------------------CceEEEEecCCcCCCCCcHHHHHHhhhcc--------------------------CC----
Confidence 1249999999876 456998877431000 00
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 377 --~~~~~~~~~l~~~~l~~~~---------~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~ 445 (538)
T 1yqt_A 377 --NSNFYKTELLKPLGIIDLY---------DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 445 (538)
T ss_dssp --TCHHHHHHTTTTTTCGGGT---------TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCChhhh---------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0123345556655554322 33466799999999999999999999999999999999999999999886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||||++|++
T Consensus 446 ~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 446 HLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 4 499999999998765 58999999986
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=6.7e-34 Score=332.93 Aligned_cols=186 Identities=24% Similarity=0.249 Sum_probs=152.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----------------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----------------- 415 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------------
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------------
Confidence 36999999999952 4689999999999999999999999999999999999999999964
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+..|||+||++.+ ++.|+.||+.+.... . .
T Consensus 416 -------------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~----------------------~------- 446 (607)
T 3bk7_A 416 -------------------DLTVAYKPQYIKAEYEGTVYELLSKIDSS-K----------------------L------- 446 (607)
T ss_dssp -------------------CCCEEEECSSCCCCCSSBHHHHHHHHHHH-H----------------------H-------
T ss_pred -------------------eeEEEEEecCccCCCCCcHHHHHHhhhcc-C----------------------C-------
Confidence 1249999999876 456998887541000 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+++....+ ....+|||||||||+|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 447 --~~~~~~~~~l~~~~l~~~~~---------~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 515 (607)
T 3bk7_A 447 --NSNFYKTELLKPLGIIDLYD---------RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 515 (607)
T ss_dssp --HCHHHHHHTHHHHTCTTTTT---------SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCchHhc---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 01234556677776654322 3356799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||||++|++
T Consensus 516 ~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 516 HLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 4 489999999998765 57999999985
No 52
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.2e-34 Score=331.77 Aligned_cols=206 Identities=20% Similarity=0.250 Sum_probs=149.8
Q ss_pred cEEE--------eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccccc
Q 040758 498 LLDI--------EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA 569 (788)
Q Consensus 498 ~I~~--------~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~ 569 (788)
.|++ +||+++|++ ...+|+|+| +|++||+++|+||||||||||+|+|+|+++|++|++..+ ...+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~---~~~~-- 155 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV-NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS---WDNV-- 155 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCC---HHHH--
T ss_pred eEEEecCCccccCCeEEEECC-CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccc---cchh--
Confidence 4888 999999963 225899999 999999999999999999999999999999999985210 0000
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccc----cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY----MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~----lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~ 645 (788)
....++.++.... ......+..+++++|... ++.+|+.||+....
T Consensus 156 ------~~~~~G~~~~~~~-~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------------------------ 204 (607)
T 3bk7_A 156 ------IRAFRGNELQNYF-ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------------------------ 204 (607)
T ss_dssp ------HHHTTTSTHHHHH-HHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------------------------
T ss_pred ------hheeCCEehhhhh-hhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------------------------
Confidence 0001111111000 000012345888888753 33458888874210
Q ss_pred hhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040758 646 QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725 (788)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~ 725 (788)
..+.+.++++.+++....+ ....+||||||||++|||||+++|++||||||||+||+.
T Consensus 205 -------------~~~~~~~~L~~lgL~~~~~---------~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~ 262 (607)
T 3bk7_A 205 -------------EVGKFEEVVKELELENVLD---------RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262 (607)
T ss_dssp -------------CSSCHHHHHHHTTCTTGGG---------SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred -------------HHHHHHHHHHHcCCCchhC---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 0123456777777754433 235679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 726 NEAHLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 726 se~~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
+...+.+.|++ .|+|+|+|||+++.+ ..||+|++|+++
T Consensus 263 ~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999888864 499999999998765 579999999864
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=7.4e-34 Score=329.06 Aligned_cols=205 Identities=20% Similarity=0.230 Sum_probs=145.6
Q ss_pred EEE-eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 499 LDI-EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~-~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++ +||+++|++ ...+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++... ...+ ..
T Consensus 21 ~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~---~~~~--------~~ 87 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS---WDGV--------IR 87 (538)
T ss_dssp ---CCCEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCS---HHHH--------HH
T ss_pred hhHhcCcEEEECC-ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcc---hhhh--------HH
Confidence 345 589999963 225899999 999999999999999999999999999999999985100 0000 00
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC----CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV----LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf----~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
..++.++.... ......+..+++++|+..++ .+|+.+|+....
T Consensus 88 ~~~g~~~~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-------------------------------- 134 (538)
T 1yqt_A 88 AFRGNELQNYF-EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-------------------------------- 134 (538)
T ss_dssp HTTTSTHHHHH-HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--------------------------------
T ss_pred hhCCccHHHHH-HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--------------------------------
Confidence 00111111000 00011234588999976543 246776653100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
..+++.++++.+++....+ ....+|||||||||+|||||+.+|++||||||||+||+.+...+.+.
T Consensus 135 -----~~~~~~~~l~~lgl~~~~~---------~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~ 200 (538)
T 1yqt_A 135 -----ETGKLEEVVKALELENVLE---------REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA 200 (538)
T ss_dssp -----SSSCHHHHHHHTTCTTTTT---------SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCChhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 0123556777777654332 23567999999999999999999999999999999999999999888
Q ss_pred HHh---cCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 734 IEA---AGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
|++ .|+|+|+||||++.+ ..||+|++|++|
T Consensus 201 L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 201 IRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 864 599999999998765 579999999865
No 54
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.2e-32 Score=319.60 Aligned_cols=183 Identities=23% Similarity=0.258 Sum_probs=146.0
Q ss_pred eeeEEEcCCCCccceeeeeEEEeCC-----CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 502 EDLTLKTPTSKATLVRDLSLVINEK-----EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl~i~~G-----e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++|+|++ ...+++|+||++++| |+++|+||||||||||+++|+|+.+|++|+..
T Consensus 350 ~~~~~~y~~-~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~------------------ 410 (608)
T 3j16_B 350 ASRAFSYPS-LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI------------------ 410 (608)
T ss_dssp SSSCCEECC-EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC------------------
T ss_pred cceeEEecC-cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc------------------
Confidence 678889974 446899999999999 88999999999999999999999999999631
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.+..++|+||+... |..|+++|+......
T Consensus 411 ------------------~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~-------------------------------- 440 (608)
T 3j16_B 411 ------------------PKLNVSMKPQKIAPKFPGTVRQLFFKKIRG-------------------------------- 440 (608)
T ss_dssp ------------------CSCCEEEECSSCCCCCCSBHHHHHHHHCSS--------------------------------
T ss_pred ------------------cCCcEEEecccccccCCccHHHHHHHHhhc--------------------------------
Confidence 01349999999754 567999987421100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+...++++.+++.... .....+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 441 ~~~~~~~~~~~l~~l~l~~~~---------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~ 511 (608)
T 3j16_B 441 QFLNPQFQTDVVKPLRIDDII---------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511 (608)
T ss_dssp TTTSHHHHHHTHHHHTSTTTS---------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCChhhh---------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 001123345567777665432 33467899999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||||++|++
T Consensus 512 ~l~~~~g~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 512 RFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHHTCEEEEECSCHHHHHHHCSEEEECEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 4 499999999998765 57999999986
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.97 E-value=7.1e-31 Score=317.56 Aligned_cols=186 Identities=23% Similarity=0.296 Sum_probs=148.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|...|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+| |+| + |.+..
T Consensus 434 ~~L~~~~ls~~yg--~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~---g~~~~-------- 492 (986)
T 2iw3_A 434 EDLCNCEFSLAYG--AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--D---GFPTQ-------- 492 (986)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--T---TCCCT--------
T ss_pred ceeEEeeEEEEEC--CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--C---CCccc--------
Confidence 3688889999995 4679999999999999999999999999999999995 544 1 11110
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc-ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. +..++|++|++ .++ ..|+.||+.+...
T Consensus 493 ----------------~--~~~~~~v~q~~~~~~~~ltv~e~l~~~~~-------------------------------- 522 (986)
T 2iw3_A 493 ----------------E--ECRTVYVEHDIDGTHSDTSVLDFVFESGV-------------------------------- 522 (986)
T ss_dssp ----------------T--TSCEEETTCCCCCCCTTSBHHHHHHTTCS--------------------------------
T ss_pred ----------------c--ceeEEEEcccccccccCCcHHHHHHHhhc--------------------------------
Confidence 0 12378999985 444 4599999965100
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.. .+++.+.|+.+++. ...+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 523 --~~-~~~v~~~L~~lgL~~~~~~---------~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 523 --GT-KEAIKDKLIEFGFTDEMIA---------MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590 (986)
T ss_dssp --SC-HHHHHHHHHHTTCCHHHHH---------SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred --CH-HHHHHHHHHHcCCChhhhc---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 00 34567778887763 2222 23456999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|++.|+|+|+|||+++.+ ..||+|++|++|+.
T Consensus 591 L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 591 LNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp HHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 988899999999998766 67999999999864
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=2.1e-31 Score=316.98 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=118.5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCceEEEeeccCcccccCC
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLL---------------------RAMAGLWSDGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl---------------------~lL~gl~~p~~G~I~~~~~~~~~i~~~~ 571 (788)
..+|+|+||+|++||++||+||||||||||+ +++.|+..|+.|.|...+ ..+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~---~~i~--- 104 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLS---PAIS--- 104 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCC---CEEE---
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccc---cceE---
Confidence 4689999999999999999999999999998 899999999966554210 0110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEcccccc--------------------CCCCHHHHhcCCCCccccchhhH
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM--------------------VLGSLRQQLIYPTWTEEVKPASD 631 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l--------------------f~~Ti~eNi~~~~~~~~~~~~~~ 631 (788)
+++.+.. ...+..+++|+|.+.+ ...|++||+.+..... ......
T Consensus 105 -------~~~~~~~-------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-~~~~~~ 169 (670)
T 3ux8_A 105 -------IDQKTTS-------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLE-LTEKEA 169 (670)
T ss_dssp -------ESSCC------------CCBHHHHTTCC-------------------------CC------------------
T ss_pred -------ecCchhh-------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccc-cchhhh
Confidence 0000000 0112334455444332 2347888887632110 000000
Q ss_pred HHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 040758 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ 711 (788)
Q Consensus 632 aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~ 711 (788)
..... ......+..+.++.+++++.. ......+|||||||||+|||||+.+|+
T Consensus 170 ------------------~~~~~-~~~~~~~~~~~l~~~gL~~~~--------~~~~~~~LSGGe~QRv~iArAL~~~p~ 222 (670)
T 3ux8_A 170 ------------------QIARL-ILREIRDRLGFLQNVGLDYLT--------LSRSAGTLSGGEAQRIRLATQIGSRLT 222 (670)
T ss_dssp ----------------------------CHHHHHHHHHTTCTTCC--------TTCBGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred ------------------HHHHH-HHHHHHHHHHHHHHcCCchhh--------hcCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 00000 000011223456666665321 123456799999999999999999998
Q ss_pred --EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 712 --IVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 712 --iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
+||||||||+||+.+...+.+.|++ .|.|+|+|||+++.+..||+|++|.
T Consensus 223 ~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~ 277 (670)
T 3ux8_A 223 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIG 277 (670)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEEC
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEec
Confidence 9999999999999999999988754 6999999999998888899999993
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=5.4e-31 Score=304.54 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=135.9
Q ss_pred eeEEEcCCCCccceeeeeEEEe-CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcc
Q 040758 503 DLTLKTPTSKATLVRDLSLVIN-EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNS 581 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~-~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~ 581 (788)
+++.+|+.+ -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+|... .+.+- ....+++
T Consensus 4 ~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~--~~~~~-------~~~~~~g 71 (538)
T 3ozx_A 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK--VGKDE-------VLKRFRG 71 (538)
T ss_dssp CEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSC--CCHHH-------HHHHHTT
T ss_pred CCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccc--cchhh-------HHhhcCC
Confidence 456788542 3455555554 999999999999999999999999999999998210 00000 0000111
Q ss_pred cccccchhc---ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 582 QNMNGELTR---SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 582 ~~~~~~~~~---~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
.++...... ........+.++.|.+.++.+|+++++....
T Consensus 72 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------------------------------------- 114 (538)
T 3ozx_A 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID------------------------------------- 114 (538)
T ss_dssp STTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-------------------------------------
T ss_pred eeHHHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch-------------------------------------
Confidence 111100000 0000111233444445555667766553110
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..+.+.++++.+++....+ ....+|||||||||+|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 115 ~~~~~~~~l~~l~l~~~~~---------~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 115 ERGKKDEVKELLNMTNLWN---------KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp CSSCHHHHHHHTTCGGGTT---------SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 1123445667766654332 23567999999999999999999999999999999999999999988875
Q ss_pred cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|+||||++.+ ..||+|++|++|.
T Consensus 186 ~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 186 KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 499999999998765 5799999998753
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.1e-31 Score=306.42 Aligned_cols=206 Identities=19% Similarity=0.207 Sum_probs=136.0
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQ 582 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~ 582 (788)
|++++|+. ....|++++ ++++||++||+||||||||||+|+|+|+++|++|+|... . ... ......++.
T Consensus 82 ~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~--~--~~~-----~~~~~~~g~ 150 (608)
T 3j16_B 82 HVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP--P--EWQ-----EIIKYFRGS 150 (608)
T ss_dssp TEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCS--S--CHH-----HHHHHTTTS
T ss_pred CeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecc--c--chh-----hhhheecCh
Confidence 56788864 345678877 699999999999999999999999999999999998310 0 000 000000000
Q ss_pred ccccchhcccccCcceEEEEccccccCC----C---CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 583 NMNGELTRSMNRNSRGVFFLPQRPYMVL----G---SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 583 ~~~~~~~~~~~~~r~~i~~v~Q~~~lf~----~---Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
++........ .......+.+|....+. + ++.+++. . .
T Consensus 151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~--------------------------------~---~ 194 (608)
T 3j16_B 151 ELQNYFTKML-EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK--------------------------------L---R 194 (608)
T ss_dssp THHHHHHHHH-HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH--------------------------------H---H
T ss_pred hhhhhhhHHH-HHhhhhhhchhhhhhhhhhhcchhhHHHHHHh--------------------------------h---h
Confidence 0000000000 00001223333221100 0 1111110 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+++|++||||||||+||+.+...+.+.++
T Consensus 195 ~~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~ 265 (608)
T 3j16_B 195 MEKSPEDVKRYIKILQLENVLK---------RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265 (608)
T ss_dssp CCSCHHHHHHHHHHHTCTGGGG---------SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCcchhC---------CChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence 1123456778888888765433 3467799999999999999999999999999999999999999998886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+ .|+|+|+||||++.+ ..||+|++|++|.
T Consensus 266 ~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 266 SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp GGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 4 589999999998765 5799999998653
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=9.6e-30 Score=302.78 Aligned_cols=91 Identities=26% Similarity=0.383 Sum_probs=76.3
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
+..+.++.+++.+. ..+..+.+|||||||||+|||||+++| ++|||||||++||+.+...+.+.|++
T Consensus 522 ~~~~~l~~~~l~~~--------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~ 593 (670)
T 3ux8_A 522 RKLETLYDVGLGYM--------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 593 (670)
T ss_dssp HHHHHHHHTTCTTS--------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchh--------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 44566666665421 123456789999999999999999887 49999999999999999999988764
Q ss_pred -cCCEEEEEecCcchhhcCCEEEEE
Q 040758 737 -AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.|+|+|+|||+++.+..||+|++|
T Consensus 594 ~~g~tvi~vtHd~~~~~~~d~i~~l 618 (670)
T 3ux8_A 594 DNGDTVLVIEHNLDVIKTADYIIDL 618 (670)
T ss_dssp HTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred HCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 599999999999888889999999
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.3e-31 Score=297.82 Aligned_cols=188 Identities=19% Similarity=0.175 Sum_probs=143.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-e-EEEeeccCcccccCCCc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-K-ITFYVKDREETDAHTSD 573 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~-I~~~~~~~~~i~~~~~~ 573 (788)
.++++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |.+|| +
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg----~------- 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL----D------- 176 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC----C-------
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC----C-------
Confidence 45688888888883 79999999999999999999999999999999999999 9 99853 0
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCC----CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL----GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~----~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
.++.+++|||++.+|. .|++||+ |+.....-.
T Consensus 177 ---------------------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---------------------- 212 (460)
T 2npi_A 177 ---------------------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA---------------------- 212 (460)
T ss_dssp ---------------------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC----------------------
T ss_pred ---------------------ccCCeeeeccchhhcccccccchhhhh-cccccccCc----------------------
Confidence 1456899999986543 4899998 653210000
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHH--HccCCCE----EEEec-CCCCC
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARL--LLSKPQI----VLLDE-STSAL 722 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARA--Ll~~p~i----LiLDE-pTSaL 722 (788)
...+.+.++++.+ |++...+ ..+||||||||++|||| |+.+|++ ||||| ||++|
T Consensus 213 --------~~~~~~~~ll~~~----------gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 213 --------TLLHNKQPMVKNF----------GLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp --------CSSCCBCCEECCC----------CSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred --------chHHHHHHHHHHh----------CCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 0000001112222 2222222 56799999999999999 9999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhcCCEEEEEecCcc------hh-hcCCE-----EEEEc-cCCCC
Q 040758 723 DEANEAHLYEQIEAAGITYISVGHRRT------LY-DFHKR-----VLRIS-TVDQN 766 (788)
Q Consensus 723 D~~se~~i~~~L~~~g~TvI~IaHr~~------~~-~~~D~-----Ilvl~-~g~~~ 766 (788)
|+. ...+.+.+++.++|+|+|+|+.+ .+ ++||+ |++|+ +|+..
T Consensus 274 D~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 274 DEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred Chh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 999 77777777777999999999976 33 68999 99999 88754
No 61
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.95 E-value=3.8e-31 Score=284.20 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=125.7
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||+|+|+ .++|+|+||+|++|++++||||||||||||+++|+|++ +|+|.
T Consensus 100 ~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------ 155 (305)
T 2v9p_A 100 TFFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------ 155 (305)
T ss_dssp HHHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE------------------
T ss_pred CeEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE------------------
Confidence 3589999999995 57999999999999999999999999999999999999 89884
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHH-HhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ-QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~e-Ni~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
++++|++.+|.+|+++ ||.|+. ..+
T Consensus 156 -----------------------~~v~q~~~lf~~ti~~~ni~~~~-~~~------------------------------ 181 (305)
T 2v9p_A 156 -----------------------SFANHKSHFWLASLADTRAALVD-DAT------------------------------ 181 (305)
T ss_dssp -----------------------CGGGTTSGGGGGGGTTCSCEEEE-EEC------------------------------
T ss_pred -----------------------EEecCccccccccHHHHhhccCc-ccc------------------------------
Confidence 3478999999999997 998851 100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
+.+.+.++.+ + ++|++ |..|||||||| ||||+++|+||| ||+||+.++..+..
T Consensus 182 -----~~~~~~i~~~-L------~~gld-----g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--- 234 (305)
T 2v9p_A 182 -----HACWRYFDTY-L------RNALD-----GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--- 234 (305)
T ss_dssp -----HHHHHHHHHT-T------TGGGG-----TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---
T ss_pred -----HHHHHHHHHH-h------HccCC-----ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---
Confidence 0122222221 1 13444 67899999999 999999999999 99999999998862
Q ss_pred hcCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 736 AAGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 736 ~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
++||+++++.||+| +|++|+..
T Consensus 235 --------ltH~~~~~~~aD~i-vl~~G~iv 256 (305)
T 2v9p_A 235 --------LHSRVQTFRFEQPC-TDESGEQP 256 (305)
T ss_dssp --------GTTTEEEEECCCCC-CCC---CC
T ss_pred --------HhCCHHHHHhCCEE-EEeCCEEE
Confidence 29999999999999 99999764
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.94 E-value=5.9e-27 Score=283.24 Aligned_cols=93 Identities=27% Similarity=0.383 Sum_probs=80.6
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.+..+.|+.+++++. ..+..+.+|||||||||+|||||+++| ++|||||||+|||+.+++.+++.|++
T Consensus 783 ~~~~~~L~~vGL~~~--------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 783 KRTLQVLHDVGLGYV--------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHHHHHTTGGGS--------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchh--------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 456677888877542 235667889999999999999999876 79999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|+|+|+|++++++.||+|++|.
T Consensus 855 ~~~G~TVIvI~HdL~~i~~ADrIivLg 881 (916)
T 3pih_A 855 VDRGNTVIVIEHNLDVIKNADHIIDLG 881 (916)
T ss_dssp HHTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred HhcCCEEEEEeCCHHHHHhCCEEEEec
Confidence 6999999999999998999999994
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=1.7e-27 Score=267.24 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=66.8
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 692 LSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 692 LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|++ +|+|+|+|||+++++..||++++|+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~ 369 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVE 369 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEE
Confidence 7999999999999999999 99999999999999999999999986 4899999999999888999999993
No 64
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.93 E-value=2.1e-26 Score=276.23 Aligned_cols=93 Identities=32% Similarity=0.389 Sum_probs=79.2
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK---PQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~---p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
+++.+.|+.+++.+. ..+....+|||||||||+|||+|+++ |++|||||||++||+.+.+.+.+.|++
T Consensus 708 ~~~~~~L~~~gL~~~--------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 708 FRALDTLREVGLGYL--------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHHTTCTTS--------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcc--------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 346677888777642 12344677999999999999999996 799999999999999999999888754
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|||+|||+++.++.||+|++|.
T Consensus 780 ~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 780 VDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp HHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred HhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 6999999999998888999999994
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.93 E-value=4.1e-26 Score=274.10 Aligned_cols=92 Identities=26% Similarity=0.380 Sum_probs=77.6
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
+..+.|+.+++.+. ..+....+|||||||||+|||+|+++| ++|||||||++||+.+...+.+.|++
T Consensus 824 ~~~~~L~~~gL~~~--------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~ 895 (972)
T 2r6f_A 824 RKLETLYDVGLGYM--------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 895 (972)
T ss_dssp HHHHHHHHTTCSSS--------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcc--------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 34567777776541 123446779999999999999999875 99999999999999999999988764
Q ss_pred -cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 -AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|+|+|||+++.++.||+|++|.
T Consensus 896 ~~G~TVIvisHdl~~i~~aDrIivL~ 921 (972)
T 2r6f_A 896 DNGDTVLVIEHNLDVIKTADYIIDLG 921 (972)
T ss_dssp HTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred hCCCEEEEEcCCHHHHHhCCEEEEEc
Confidence 6999999999998888999999994
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.93 E-value=1.4e-25 Score=270.47 Aligned_cols=92 Identities=27% Similarity=0.394 Sum_probs=77.8
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
+..+.|+.+++.+. ..+....+|||||||||+|||+|+++| ++|||||||++||+.+...+.+.|++
T Consensus 842 ~~~~~L~~lgL~~~--------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~ 913 (993)
T 2ygr_A 842 RYLRTLVDVGLGYV--------RLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLV 913 (993)
T ss_dssp HHHHHHHHTTGGGS--------BTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcc--------cccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 34567777776541 123446789999999999999999875 99999999999999999999988764
Q ss_pred -cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 -AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|+|+|||+++.++.||+|++|.
T Consensus 914 ~~G~TVIvisHdl~~i~~aDrIivL~ 939 (993)
T 2ygr_A 914 DKGNTVIVIEHNLDVIKTSDWIIDLG 939 (993)
T ss_dssp HTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred hCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 6999999999998888999999995
No 67
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=6.9e-27 Score=238.62 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=100.3
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|... ++. .+
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-----~~~---------------------~~ 60 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-----ILT---------------------RP 60 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-----EEE---------------------EC
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-----Eec---------------------CC
Confidence 45789996 89999999999999999999999999 9999999421 110 01
Q ss_pred cccCcceEEEEccccccCCCCHHHHh-cCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQL-IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi-~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
....++.+|||||++ +||+ .+.... .. .+.. ....+.+.+.++.
T Consensus 61 ~~~~~~~ig~v~q~~-------~enl~~~~~~~------~~------------------~~~~---~~~~~~~~~~l~~- 105 (208)
T 3b85_A 61 AVEAGEKLGFLPGTL-------NEKIDPYLRPL------HD------------------ALRD---MVEPEVIPKLMEA- 105 (208)
T ss_dssp SCCTTCCCCSSCC-------------CTTTHHH------HH------------------HHTT---TSCTTHHHHHHHT-
T ss_pred chhhhcceEEecCCH-------HHHHHHHHHHH------HH------------------HHHH---hccHHHHHHHHHh-
Confidence 113456799999987 6777 442100 00 0000 0011234444431
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCc
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRR 748 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~ 748 (788)
.| |||||++|||||+.+|++||||||||+ ++..+.+.|++ .|+|+| +||++
T Consensus 106 --------------------gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~ 158 (208)
T 3b85_A 106 --------------------GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDI 158 (208)
T ss_dssp --------------------TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-
T ss_pred --------------------CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCH
Confidence 13 999999999999999999999999999 77788887765 588999 99998
Q ss_pred chhhcCCEEEEEccCC
Q 040758 749 TLYDFHKRVLRISTVD 764 (788)
Q Consensus 749 ~~~~~~D~Ilvl~~g~ 764 (788)
+.++ ++..+++|.
T Consensus 159 ~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 159 TQVD---LPGGQKSGL 171 (208)
T ss_dssp --------------CC
T ss_pred HHHh---CcCCCCCcH
Confidence 7554 445566764
No 68
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=6.1e-26 Score=224.25 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH----------------HHHHHHHH---hcCCEEEEEecCcc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE----------------AHLYEQIE---AAGITYISVGHRRT 749 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se----------------~~i~~~L~---~~g~TvI~IaHr~~ 749 (788)
....|||||||++||||+..+|++|+|||||++||+.++ ..+.+.++ ++|.|+|+|||+++
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 345799999999999999999999999999999999944 66777643 46999999999998
Q ss_pred hhhcCCEE
Q 040758 750 LYDFHKRV 757 (788)
Q Consensus 750 ~~~~~D~I 757 (788)
.+..++++
T Consensus 161 ~~~~~~~~ 168 (171)
T 4gp7_A 161 EVEEVVFE 168 (171)
T ss_dssp HHHHEEEE
T ss_pred Hhhhhhhc
Confidence 87666554
No 69
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.91 E-value=1.3e-24 Score=236.36 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEE--EE
Q 040758 688 WSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRV--LR 759 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~I--lv 759 (788)
....||||||||++|||||+ ++|++|||||||++||+.....+.+.+++ .|+|+|+|||+.++...||++ ++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEE
Confidence 45689999999999999996 78999999999999999999999998876 488999999998888899987 88
Q ss_pred EccCC
Q 040758 760 ISTVD 764 (788)
Q Consensus 760 l~~g~ 764 (788)
|++|.
T Consensus 296 ~~~g~ 300 (322)
T 1e69_A 296 MVNGV 300 (322)
T ss_dssp ESSSC
T ss_pred EeCCE
Confidence 88764
No 70
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=2.8e-23 Score=229.63 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=72.5
Q ss_pred cCCCCCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEE
Q 040758 687 EWSSVLSLGEQQRLAFARLLL------SKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl------~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~I 757 (788)
....+||||||||++|||||+ ++|++|||||||++||+.+...+.+.|++ .|+|+|+|||+++....||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345679999999999999999 79999999999999999999999998865 589999999999888889999
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
++|++|+.
T Consensus 355 ~~l~~G~i 362 (365)
T 3qf7_A 355 LRITGGVV 362 (365)
T ss_dssp EEEETTEE
T ss_pred EEEECCEE
Confidence 99999864
No 71
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.89 E-value=2e-26 Score=236.80 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=106.6
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMN 593 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (788)
.-|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+.... .+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~----------------------~~~~ 64 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTR----------------------KKRE 64 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECS----------------------CCCS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCC----------------------CCCc
Confidence 4699999999999999999999999999999999999 5 99998 4332110 0111
Q ss_pred cCcceEEEEccccccCCCCH--HHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 594 RNSRGVFFLPQRPYMVLGSL--RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 594 ~~r~~i~~v~Q~~~lf~~Ti--~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
..++.++|++|++.+|..-+ .+++.++..... .. ....+++.++++...
T Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~-----g~~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 65 KEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANN------------------------FY-----GTLKSEYDKAKEQNK 115 (218)
T ss_dssp SCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE------------------------EE-----EEEHHHHHHHHHTTC
T ss_pred ccccCCeEEECCHHHHHHhhhccchhhhhhcccc------------------------cC-----CCcHHHHHHHHhCCC
Confidence 23456999999987764311 112211100000 00 001234445555432
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHH-----HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEE
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAF-----ARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISV 744 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaI-----ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~I 744 (788)
.. +. ..+||||||||++| ||+|+.+|++++|||||+++|.+++..+++.+.+ .++| +
T Consensus 116 ~~-il------------~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~ 179 (218)
T 1z6g_A 116 IC-LF------------EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---E 179 (218)
T ss_dssp EE-EE------------EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---H
T ss_pred cE-EE------------EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---h
Confidence 11 00 13599999999999 8999999999999999999999999999988864 3444 4
Q ss_pred ecCcchhhcCCEEEEEc
Q 040758 745 GHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 745 aHr~~~~~~~D~Ilvl~ 761 (788)
+| ...+|+|++++
T Consensus 180 ~h----~~~~d~iiv~~ 192 (218)
T 1z6g_A 180 AN----LLNFNLSIIND 192 (218)
T ss_dssp HT----TSCCSEEEECS
T ss_pred hc----ccCCCEEEECC
Confidence 55 34566666554
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=8.5e-24 Score=210.55 Aligned_cols=76 Identities=5% Similarity=0.173 Sum_probs=63.5
Q ss_pred cCCCCCChhHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHhcCCEEEEEec---Ccchh-hcCC
Q 040758 687 EWSSVLSLGEQQRLAFARL-----LLSKPQIVLLDE--STSALDEANEAHLYEQIEAAGITYISVGH---RRTLY-DFHK 755 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARA-----Ll~~p~iLiLDE--pTSaLD~~se~~i~~~L~~~g~TvI~IaH---r~~~~-~~~D 755 (788)
.++.+||||||||++|||| ++.+|++||||| ||++||+...+.+.+.+++.+.|+|+++| +...+ ..||
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~ 151 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRR 151 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHT
T ss_pred ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHh
Confidence 4456799999999999996 999999999999 99999999999999999888888999997 44444 4566
Q ss_pred E----EEEEcc
Q 040758 756 R----VLRIST 762 (788)
Q Consensus 756 ~----Ilvl~~ 762 (788)
+ |+.+..
T Consensus 152 r~~~~i~~~~~ 162 (178)
T 1ye8_A 152 LPGAVLIELTP 162 (178)
T ss_dssp CTTCEEEECCT
T ss_pred cCCcEEEEecC
Confidence 5 555543
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=5.2e-25 Score=245.89 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=125.5
Q ss_pred ccceeeeeEEEeCCC--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 513 ATLVRDLSLVINEKE--------------------HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge--------------------~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+.+|+|+||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|. +.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~---~~----- 107 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV---EV----- 107 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe---ec-----
Confidence 468999999999999 99999999999999999999999999999987421 11
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
. + .++++|++...+.|+.||+.++...
T Consensus 108 ------------------t----~--~~~v~q~~~~~~ltv~D~~g~~~~~----------------------------- 134 (413)
T 1tq4_A 108 ------------------T----M--ERHPYKHPNIPNVVFWDLPGIGSTN----------------------------- 134 (413)
T ss_dssp -----------------------C--CCEEEECSSCTTEEEEECCCGGGSS-----------------------------
T ss_pred ------------------c----e--eEEeccccccCCeeehHhhcccchH-----------------------------
Confidence 0 1 2679998754456888887664210
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChh--HHHHHHHHHHHcc----------CCCEEEEecCCC
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLG--EQQRLAFARLLLS----------KPQIVLLDESTS 720 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGG--QrQRiaIARALl~----------~p~iLiLDEpTS 720 (788)
..+.+.++.+++... +. ... |||| ||||++|||||.+ +|++++|||||+
T Consensus 135 --------~~~~~~L~~~~L~~~-------~~---~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPts 195 (413)
T 1tq4_A 135 --------FPPDTYLEKMKFYEY-------DF---FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADG 195 (413)
T ss_dssp --------CCHHHHHHHTTGGGC-------SE---EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTT
T ss_pred --------HHHHHHHHHcCCCcc-------CC---eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccc
Confidence 123455665554321 11 112 9999 9999999999999 999999999999
Q ss_pred CCCHHHHHHHHHHHHh--------c----CCEEEEEecCcc---hhhcCCEEE
Q 040758 721 ALDEANEAHLYEQIEA--------A----GITYISVGHRRT---LYDFHKRVL 758 (788)
Q Consensus 721 aLD~~se~~i~~~L~~--------~----g~TvI~IaHr~~---~~~~~D~Il 758 (788)
+||+.++..+.+.+++ . ..++++.||.++ +.+.||+|.
T Consensus 196 gLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 196 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999999888766532 1 267888999865 456678774
No 74
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=5.9e-24 Score=231.84 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=108.8
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
|++++| | +++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~------------- 210 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EI------------- 210 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CC-------------
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--cc-------------
Confidence 667777 6 358999999999999999999999999999999999999999999985321 00
Q ss_pred ccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCCh
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST 660 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~ 660 (788)
.....++.+++++
T Consensus 211 ----------~~~~~~~~i~~~~--------------------------------------------------------- 223 (330)
T 2pt7_A 211 ----------VFKHHKNYTQLFF--------------------------------------------------------- 223 (330)
T ss_dssp ----------CCSSCSSEEEEEC---------------------------------------------------------
T ss_pred ----------ccccchhEEEEEe---------------------------------------------------------
Confidence 0000111122110
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCE
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGIT 740 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~T 740 (788)
+ |||+||++|||||.++|++|+|||||+. +..+ ..+.+...+.|
T Consensus 224 ----------------------------g----gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~t 267 (330)
T 2pt7_A 224 ----------------------------G----GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKG 267 (330)
T ss_dssp ----------------------------B----TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCC
T ss_pred ----------------------------C----CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCE
Confidence 1 8999999999999999999999999982 2222 23333333458
Q ss_pred EEEEecCcchhhcCCEEEEEccCCC
Q 040758 741 YISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 741 vI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+|+++|+.+..+.|||+++|.+|..
T Consensus 268 vi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 268 TLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEEEcccHHHHHhhhheehhcCCc
Confidence 9999999998889999999998863
No 75
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=2.5e-23 Score=225.03 Aligned_cols=182 Identities=15% Similarity=0.093 Sum_probs=129.7
Q ss_pred CCCcEEEeeeEEEcCCCCccceeeeeEE-----------------------EeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVRDLSLV-----------------------INEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~~isl~-----------------------i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 40 ~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345799999999993 577887775 89999999999999999999999999999
Q ss_pred CCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhH
Q 040758 552 DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631 (788)
Q Consensus 552 p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~ 631 (788)
|..|. +.+++|+|+++++..|++||+.+.... ...
T Consensus 116 ~~~G~----------------------------------------~~v~~v~qd~~~~~~t~~e~~~~~~~~-g~~---- 150 (312)
T 3aez_A 116 RWDHH----------------------------------------PRVDLVTTDGFLYPNAELQRRNLMHRK-GFP---- 150 (312)
T ss_dssp TSTTC----------------------------------------CCEEEEEGGGGBCCHHHHHHTTCTTCT-TSG----
T ss_pred ccCCC----------------------------------------CeEEEEecCccCCcccHHHHHHHHHhc-CCC----
Confidence 87552 138999999999988999998653210 000
Q ss_pred HHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 040758 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ 711 (788)
Q Consensus 632 aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~ 711 (788)
...+.+.+.+.++.++ .. .. ......|||||+||+++|||++.+|+
T Consensus 151 ------------------------~~~d~~~~~~~L~~l~-~~-------~~--~~~~~~lS~G~~qRv~~a~al~~~p~ 196 (312)
T 3aez_A 151 ------------------------ESYNRRALMRFVTSVK-SG-------SD--YACAPVYSHLHYDIIPGAEQVVRHPD 196 (312)
T ss_dssp ------------------------GGBCHHHHHHHHHHHH-TT-------CS--CEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred ------------------------hHHHHHHHHHHHHHhC-CC-------cc--cCCcccCChhhhhhhhhHHHhccCCC
Confidence 0012345556666654 21 11 11234699999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh--hcCCEEEEEccCC
Q 040758 712 IVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY--DFHKRVLRISTVD 764 (788)
Q Consensus 712 iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~--~~~D~Ilvl~~g~ 764 (788)
|||||||++.+|+.. ..+.+.=-.+|+|+|+.++. ...+|.+.+.++.
T Consensus 197 ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 197 ILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred EEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 999999999998621 12333222457777776542 3456666565543
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.84 E-value=2.7e-23 Score=234.44 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=137.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ +..+|+++ |+|.+||+++|+||||||||||+++|+|+++|+.|.|.++|..+.++.
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~-------- 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVK-------- 199 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH--------
T ss_pred CceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHH--------
Confidence 46899999999964 46799999 999999999999999999999999999999999999999765332331
Q ss_pred hhhcccccccchhcccccCcceEEEEccc-ccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQR-PYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~-~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
..... ......+++.++||+|+ ..+ ...|+.+|+.+... ..+ ..
T Consensus 200 -~~~~~------~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae---------~~~------------------~~ 245 (438)
T 2dpy_A 200 -DFIEN------ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAE---------DFR------------------DR 245 (438)
T ss_dssp -HHHHT------TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH---------HHH------------------TT
T ss_pred -HHHHh------hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHH---------HHH------------------hC
Confidence 00000 00011245679999995 333 34577777754210 000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......++ +....||+|| |||+|| +.+|++ |++||+.+...+.+.+
T Consensus 246 --------------~~~v~~~l----------d~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll 291 (438)
T 2dpy_A 246 --------------GQHVLLIM----------DSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALV 291 (438)
T ss_dssp --------------TCEEEEEE----------ECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHH
T ss_pred --------------CCCHHHHH----------HhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHH
Confidence 00000000 1134599999 999999 899998 9999999999999998
Q ss_pred Hh--c-----CC-----EEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA--A-----GI-----TYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~--~-----g~-----TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ . |. |++++|||++ ...||++++|.+|..
T Consensus 292 ~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 292 ERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHI 333 (438)
T ss_dssp TTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEE
T ss_pred HHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEE
Confidence 65 2 43 9999999998 677899988888754
No 77
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=8.2e-23 Score=220.00 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=121.5
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
++++||++++|++++||||||||||||++.|+|+++|++|+|.++|.|..... . .. .+..+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~------------a-----~~--ql~~~ 150 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA------------A-----SD--QLEIW 150 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH------------H-----HH--HHHHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchh------------H-----HH--HHHHH
Confidence 45789999999999999999999999999999999999999999654321110 0 00 00111
Q ss_pred --cceEEEEccccc-cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 596 --SRGVFFLPQRPY-MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 596 --r~~i~~v~Q~~~-lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
+.+++|++|++. ++. .|++||+.++........ .++.++
T Consensus 151 ~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~-------------------------------------lldt~g 193 (302)
T 3b9q_A 151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVV-------------------------------------LCDTSG 193 (302)
T ss_dssp HHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEE-------------------------------------EECCCC
T ss_pred HHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcch-------------------------------------HHhcCC
Confidence 346999999987 664 489999865310000000 001111
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecC-
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHR- 747 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr- 747 (788)
+.. .......+|| |||++||||++.+|+ +|+|| ||++||+.++. +.+. +.|.|+|++||-
T Consensus 194 l~~---------~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 194 RLH---------TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNEVVGITGLILTKLD 257 (302)
T ss_dssp CSS---------CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHHHTCCCEEEEECCS
T ss_pred CCc---------chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHHhcCCCEEEEeCCC
Confidence 110 0112233488 999999999999999 99999 99999998663 3444 469999999993
Q ss_pred --------cchh-hcCCEEEEEccCCC
Q 040758 748 --------RTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 748 --------~~~~-~~~D~Ilvl~~g~~ 765 (788)
++.. ...+.|.++..|..
T Consensus 258 ~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 258 GSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp SCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCccChheehHHHHCCCEEEEeCCCC
Confidence 2233 35689999999864
No 78
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=8.6e-22 Score=208.83 Aligned_cols=148 Identities=9% Similarity=0.118 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY 607 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~ 607 (788)
+++||||||||||||+|+|+|+..|++|+|.++|.+ +. ....++.+++++|++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~---i~-----------------------~~~~~~~i~~v~q~~~ 57 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK---IP-----------------------KTVEIKAIGHVIEEGG 57 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CC-----------------------CCCSCCEEEESCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc---cC-----------------------cceeeeeeEEEeecCC
Confidence 489999999999999999999999999999985432 21 1123567999999998
Q ss_pred cCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccc
Q 040758 608 MVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY 686 (788)
Q Consensus 608 lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~ 686 (788)
++.. |+.||+.|+...... ...+.+.+.++.- .. .
T Consensus 58 ~~~~ltv~d~~~~g~~~~~~-------------------------------~~~~~i~~~~~~~----~~---------~ 93 (270)
T 3sop_A 58 VKMKLTVIDTPGFGDQINNE-------------------------------NCWEPIEKYINEQ----YE---------K 93 (270)
T ss_dssp -CCEEEEECCCC--CCSBCT-------------------------------TCSHHHHHHHHHH----HH---------H
T ss_pred CcCCceEEechhhhhhcccH-------------------------------HHHHHHHHHHHHH----HH---------h
Confidence 8865 999999987532110 0011222222110 00 0
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcch
Q 040758 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTL 750 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~ 750 (788)
....+||||||||+++|||++. +++|||||++||+.. ..+.+.|.+. .++|+|.|+.+.
T Consensus 94 ~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 94 FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGGG
T ss_pred hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEecccc
Confidence 0112499999999999999886 999999999999887 4555666666 899999998654
No 79
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.81 E-value=6.9e-22 Score=217.03 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=122.4
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCc
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS 596 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 596 (788)
.++||++++|++++||||||||||||++.|+|+++|++|+|.++|.|..... ...+......+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~-----------------a~eql~~~~~r 210 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA-----------------ASDQLEIWAER 210 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH-----------------HHHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccc-----------------hhHHHHHHHHh
Confidence 4688999999999999999999999999999999999999999654321110 00000000113
Q ss_pred ceEEEEccccc-cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 597 RGVFFLPQRPY-MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 597 ~~i~~v~Q~~~-lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
.+|+|++|++. ++. .|++||+.++........ .++.+++.+
T Consensus 211 ~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~-------------------------------------lldt~Gl~~ 253 (359)
T 2og2_A 211 TGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVV-------------------------------------LCDTSGRLH 253 (359)
T ss_dssp HTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEE-------------------------------------EEECCCCSS
T ss_pred cCeEEEEecccccChhhhHHHHHHHHHhCCCHHH-------------------------------------HHHhcCCCh
Confidence 46999999987 554 588999875311000000 001111110
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecC----
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHR---- 747 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr---- 747 (788)
.......+|| |||++||||++.+|+ +|+|| ||++||+.++. +.+. +.|.|+|++||-
T Consensus 254 ---------~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---~~~~~~~g~t~iiiThlD~~~ 317 (359)
T 2og2_A 254 ---------TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNEVVGITGLILTKLDGSA 317 (359)
T ss_dssp ---------CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHHHTCCCEEEEESCTTCS
T ss_pred ---------hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---HHHHHhcCCeEEEEecCcccc
Confidence 0112233488 999999999999999 99999 99999998764 3344 369999999993
Q ss_pred -----cchh-hcCCEEEEEccCCC
Q 040758 748 -----RTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 748 -----~~~~-~~~D~Ilvl~~g~~ 765 (788)
++.. ..++.|..+..|..
T Consensus 318 ~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 318 RGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp CTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cccHHHHHHHHhCCCEEEEeCCCC
Confidence 2233 45789999998854
No 80
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.79 E-value=3e-19 Score=196.27 Aligned_cols=72 Identities=19% Similarity=0.136 Sum_probs=66.5
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEc
Q 040758 691 VLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.+.+.+.|+|++||. +. .||++++|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~--~~~~i~~l~ 341 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP--GAALTLRAQ 341 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT--TCSEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc--cCCEEEEEE
Confidence 69999999999999999 8999999999999999999999999998766899999994 43 899999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 342 ~G~i 345 (359)
T 2o5v_A 342 AGRF 345 (359)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9865
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=1.9e-22 Score=205.10 Aligned_cols=182 Identities=13% Similarity=0.086 Sum_probs=100.5
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
..++++| .+|++||+++|+||||||||||+|+|+|+++ .|.++ + ++. ..+ .
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~---~-~~~------------~~~-------~ 58 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFS---V-SAT------------TRA-------P 58 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEEC---C-CEE------------SSC-------C
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEc---c-ccc------------ccC-------C
Confidence 4568888 7999999999999999999999999999986 34442 1 110 000 0
Q ss_pred cccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
....++.++|++|++.+|.. |+.+|+........ ++ .. .+ ....+..+.++..
T Consensus 59 ~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~-----------n~-~~---------~g-----~~~~~~~~~~~~~ 112 (207)
T 1znw_A 59 RPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHG-----------GL-HR---------SG-----TLAQPVRAAAATG 112 (207)
T ss_dssp CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGG-----------GT-EE---------EE-----EEHHHHHHHHHHT
T ss_pred cccccCCCeeEecCHHHHHHHHhcCCceeehhhcC-----------ch-hh---------cC-----CcHHHHHHHHHcC
Confidence 01124569999999987753 66666532100000 00 00 00 0011122222111
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHH---HHccCCCEEEEecCCCCC----CHHHHHHHHHHHHh----cCC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFAR---LLLSKPQIVLLDESTSAL----DEANEAHLYEQIEA----AGI 739 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIAR---ALl~~p~iLiLDEpTSaL----D~~se~~i~~~L~~----~g~ 739 (788)
. ..+. ...+.|.+.++-..++ ||+.+|++++|||||+++ |+...+.+.+.+++ .|.
T Consensus 113 ~-~~~~------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~ 179 (207)
T 1znw_A 113 V-PVLI------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179 (207)
T ss_dssp C-CEEE------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGS
T ss_pred C-eEEE------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 0 0000 0012222222222222 899999999999999998 67788888776643 489
Q ss_pred EEEEEecCcchh-hcCCEEEEEc
Q 040758 740 TYISVGHRRTLY-DFHKRVLRIS 761 (788)
Q Consensus 740 TvI~IaHr~~~~-~~~D~Ilvl~ 761 (788)
|+|+|||+++.+ ..||+|++|.
T Consensus 180 tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 180 DKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHC--
T ss_pred cEEEECCCHHHHHHHHHHHHHhc
Confidence 999999998654 6899999985
No 82
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.79 E-value=8.9e-21 Score=200.06 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=103.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCccchh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+++++++|. ++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+...+
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~---------- 67 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---------- 67 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----------
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----------
Confidence 456666642 4899999 9999999999999999999999999999998 99999854321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.+..+++++|+.
T Consensus 68 -----------------~~~~~~~v~q~~--------------------------------------------------- 79 (261)
T 2eyu_A 68 -----------------FKHKKSIVNQRE--------------------------------------------------- 79 (261)
T ss_dssp -----------------CCCSSSEEEEEE---------------------------------------------------
T ss_pred -----------------cCCcceeeeHHH---------------------------------------------------
Confidence 011122333310
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA 737 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~ 737 (788)
+ |++ ...| |++|||||..+|++++||||| |+++...+.+.. +.
T Consensus 80 ------------~----------gl~-----~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~ 122 (261)
T 2eyu_A 80 ------------V----------GED-----TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ET 122 (261)
T ss_dssp ------------B----------TTT-----BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HT
T ss_pred ------------h----------CCC-----HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-cc
Confidence 0 000 0113 899999999999999999999 998876655543 46
Q ss_pred CCEEEEEecCcchhhcCCEEEEEcc
Q 040758 738 GITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
|.|+++++|+.+....|||+++|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 9999999999887778888776643
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.77 E-value=9.1e-19 Score=191.59 Aligned_cols=76 Identities=34% Similarity=0.371 Sum_probs=68.5
Q ss_pred cCCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEE
Q 040758 687 EWSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 687 e~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~I 757 (788)
.....||||||| |+++||||+.+|++|||||||++||+.....+.+.|++ .|.|+|+|||+.++...||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 345779999999 67888999999999999999999999999999988864 588999999998888899999
Q ss_pred EEEcc
Q 040758 758 LRIST 762 (788)
Q Consensus 758 lvl~~ 762 (788)
++|+.
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99975
No 84
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.75 E-value=4.9e-19 Score=211.59 Aligned_cols=146 Identities=21% Similarity=0.194 Sum_probs=112.4
Q ss_pred CCcEEEeeeEEEcCC---CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEeeccCcccccCC
Q 040758 496 QKLLDIEDLTLKTPT---SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~---~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~~~~~~~i~~~~ 571 (788)
.+.|++++. ++|- +++.+++|+||+ |++++|+||||||||||+|+++|+.. ++.|.+.-
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp------------ 610 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP------------ 610 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS------------
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee------------
Confidence 446888887 3443 346789999999 99999999999999999999999874 67776420
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
..+..+++++| +|. -++.||+..
T Consensus 611 ----------------------a~~~~i~~v~~---i~~~~~~~d~l~~------------------------------- 634 (765)
T 1ewq_A 611 ----------------------AEEAHLPLFDG---IYTRIGASDDLAG------------------------------- 634 (765)
T ss_dssp ----------------------SSEEEECCCSE---EEEECCC-------------------------------------
T ss_pred ----------------------hhccceeeHHH---hhccCCHHHHHHh-------------------------------
Confidence 11234777776 332 244444321
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHH--ccCCCEEEEecC---CCCCCHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLL--LSKPQIVLLDES---TSALDEA 725 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARAL--l~~p~iLiLDEp---TSaLD~~ 725 (788)
.+|+|++|++.+|+++ +.+|+++||||| ||+||..
T Consensus 635 ----------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 635 ----------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp ----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred ----------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence 2899999999999999 999999999999 9999998
Q ss_pred HH-HHHHHHHHhcCCEEEEEecCcchhhcC
Q 040758 726 NE-AHLYEQIEAAGITYISVGHRRTLYDFH 754 (788)
Q Consensus 726 se-~~i~~~L~~~g~TvI~IaHr~~~~~~~ 754 (788)
+. ..+.+.|.+.|.|+|++||+.++...+
T Consensus 675 ~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 675 AIATAVAEALHERRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCCHHHHTCC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 86 478888877899999999998776655
No 85
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.75 E-value=3.7e-20 Score=202.91 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=129.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.++.++.
T Consensus 44 ~~i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~-------- 113 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN-------- 113 (347)
T ss_dssp CSTTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH--------
T ss_pred CCeeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH--------
Confidence 35889999999964 46799999 999999999999999999999999999999999999998655433221
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..-+. . .....++.+.+++|... +..+++.. ...+
T Consensus 114 -~~i~~-~------~~~~~~~~v~~~~~~~~----~~~~r~~~---------~~~~------------------------ 148 (347)
T 2obl_A 114 -EFLAL-L------PQSTLSKCVLVVTTSDR----PALERMKA---------AFTA------------------------ 148 (347)
T ss_dssp -HHHTT-S------CHHHHTTEEEEEECTTS----CHHHHHHH---------HHHH------------------------
T ss_pred -HHHHh-h------hhhhhhceEEEEECCCC----CHHHHHHH---------HHHH------------------------
Confidence 00000 0 00112456788887531 11111100 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCcccc--ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTT--YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~--~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..+.+.+.+ .|.+.. .+....||+|| ||+++| +.+|++ |+|||+.....+.+.+
T Consensus 149 ----~~~ae~~~~----------~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ll 204 (347)
T 2obl_A 149 ----TTIAEYFRD----------QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLL 204 (347)
T ss_dssp ----HHHHHHHHT----------TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHH
T ss_pred ----HHHHHHHHh----------ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHH
Confidence 000011110 011110 12345699999 999999 689988 9999999999999988
Q ss_pred Hh-----cCC-----EEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA-----AGI-----TYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~-----~g~-----TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|. |++++||+++ ...||++++|.+|+.
T Consensus 205 er~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 205 ERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHI 244 (347)
T ss_dssp TTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEE
T ss_pred HHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEE
Confidence 64 256 8999999998 677999999998864
No 86
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=1.5e-20 Score=188.87 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=97.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+ ...+++.+||++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-------------------------~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-------------------------VRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-------------------------EETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-------------------------hHhhhceEEEEEEe
Confidence 78999999999999999999999999 999 8886433211 12356789999998
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT 685 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~ 685 (788)
. .++ ++|+..-... . .. . ..-...
T Consensus 54 ~---~g~-~~~l~~~~~~---------------------------------~---------------~~-~---~~~~~v 77 (189)
T 2i3b_A 54 L---SGT-RGPLSRVGLE---------------------------------P---------------PP-G---KRECRV 77 (189)
T ss_dssp T---TSC-EEEEEECCCC---------------------------------C---------------CS-S---SCCEES
T ss_pred c---ccc-eehhhccccc---------------------------------C---------------Cc-c---cccccc
Confidence 6 222 1222100000 0 00 0 000123
Q ss_pred ccCCCCCChhHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHHHhcCCEEE---EEecCcc
Q 040758 686 YEWSSVLSLGEQQRL-AFAR---LLLSKPQIVLLDE--STSALDEANEAHLYEQIEAAGITYI---SVGHRRT 749 (788)
Q Consensus 686 ~e~g~~LSGGQrQRi-aIAR---ALl~~p~iLiLDE--pTSaLD~~se~~i~~~L~~~g~TvI---~IaHr~~ 749 (788)
++++..+|+|||+++ ++++ |++++|++||||| ||..+|....+.+.+.++....+++ .++||.+
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP 150 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc
Confidence 455677999999999 5566 6899999999999 8999999998888888876433342 3449864
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.75 E-value=3.9e-19 Score=205.71 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=115.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce-EEEeeccCcccccCCCccchh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK-ITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~-I~~~~~~~~~i~~~~~~~~~~ 577 (788)
++++++++.|++ -..+| +..+++|++++|+||||||||||++.++|...|. |+ +
T Consensus 258 ~~~~~l~~g~~~-ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v-------------------- 312 (525)
T 1tf7_A 258 SSNVRVSSGVVR-LDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERA-------------------- 312 (525)
T ss_dssp CCCCEECCSCHH-HHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE--------------------
T ss_pred cccceeecChHH-HHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE--------------------
Confidence 566777766631 01233 4499999999999999999999999999998774 43 2
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhc-CCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI-YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~-~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+++|++. .++.++.. ++
T Consensus 313 ---------------------i~~~~ee~~---~~l~~~~~~~g------------------------------------ 332 (525)
T 1tf7_A 313 ---------------------ILFAYEESR---AQLLRNAYSWG------------------------------------ 332 (525)
T ss_dssp ---------------------EEEESSSCH---HHHHHHHHTTS------------------------------------
T ss_pred ---------------------EEEEEeCCH---HHHHHHHHHcC------------------------------------
Confidence 344555541 12222221 11
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH-----HHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA-----NEAHLY 731 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~-----se~~i~ 731 (788)
.+.++ +...++..+ ....+..|||||+||+++||++..+|++||+| ||++||.. ..+.+.
T Consensus 333 -~~~~~----~~~~g~~~~---------~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~ 397 (525)
T 1tf7_A 333 -MDFEE----MERQNLLKI---------VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVI 397 (525)
T ss_dssp -CCHHH----HHHTTSEEE---------CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHH
T ss_pred -CCHHH----HHhCCCEEE---------EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHH
Confidence 00011 111111111 12234569999999999999999999999999 99999998 777776
Q ss_pred HHH---HhcCCEEEEEecCc----------chh-hcCCEEEEEccCC
Q 040758 732 EQI---EAAGITYISVGHRR----------TLY-DFHKRVLRISTVD 764 (788)
Q Consensus 732 ~~L---~~~g~TvI~IaHr~----------~~~-~~~D~Ilvl~~g~ 764 (788)
+.+ ++.|.|+|+|+|+. ..+ ..||+|++|++|+
T Consensus 398 ~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 398 GVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 655 44799999999997 444 5799999999885
No 88
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=4.5e-19 Score=189.84 Aligned_cols=179 Identities=17% Similarity=0.241 Sum_probs=108.5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
.++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+ ..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~----------------------- 75 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ES----------------------- 75 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SC-----------------------
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CC-----------------------
Confidence 3579999999999999999999999999999999999999988 78663211 10
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHH-HHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD-LIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 670 (788)
....++.+..+.|+..+ +..+++..+... .....+ +.+.++..
T Consensus 76 ~~~~~~r~~~~~~~~~~---~~~~~l~~~~~~---------------------------------~~~~~~~~~~~l~~~ 119 (296)
T 1cr0_A 76 VEETAEDLIGLHNRVRL---RQSDSLKREIIE---------------------------------NGKFDQWFDELFGND 119 (296)
T ss_dssp HHHHHHHHHHHHTTCCG---GGCHHHHHHHHH---------------------------------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCCh---hhccccccCCCC---------------------------------HHHHHHHHHHHhccC
Confidence 00111122222222211 111122110000 000011 11222211
Q ss_pred ccccccccCCCccccccCCCCCChhH-HHHHHHHHHHccCCCEEEEecCCC---C---CCH-HHHHHHHHHHH----hcC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGE-QQRLAFARLLLSKPQIVLLDESTS---A---LDE-ANEAHLYEQIE----AAG 738 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQ-rQRiaIARALl~~p~iLiLDEpTS---a---LD~-~se~~i~~~L~----~~g 738 (788)
++. ..+....+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.|+ +.|
T Consensus 120 ~l~-----------i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~ 187 (296)
T 1cr0_A 120 TFH-----------LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTG 187 (296)
T ss_dssp CEE-----------EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHC
T ss_pred CEE-----------EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 111 111224589998 77777 999999999999999999 4 444 44456666664 259
Q ss_pred CEEEEEecCc-----------------------chhhcCCEEEEEccCCC
Q 040758 739 ITYISVGHRR-----------------------TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 739 ~TvI~IaHr~-----------------------~~~~~~D~Ilvl~~g~~ 765 (788)
+|+|+++|.. .+...||+|++|++|+.
T Consensus 188 ~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 188 VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp CEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 9999999984 33467999999998864
No 89
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.73 E-value=7.9e-19 Score=179.63 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=96.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-------CCceEEEeeccCcccccCCCccchhhhcccccccchhccccc
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-------GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR 594 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-------~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (788)
-|++|++++|+||||||||||+++|+|.+.+ ..|.+++++.+ . .
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~---~--------------------------~ 71 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN---T--------------------------F 71 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS---C--------------------------C
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC---C--------------------------C
Confidence 6999999999999999999999999996655 33466663211 0 0
Q ss_pred CcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 595 NSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 595 ~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
..+.+++++|+..++..|+.+|+.+...
T Consensus 72 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 99 (231)
T 4a74_A 72 RPERIREIAQNRGLDPDEVLKHIYVARA---------------------------------------------------- 99 (231)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHTEEEEEC----------------------------------------------------
T ss_pred CHHHHHHHHHHcCCCHHHHhhcEEEEec----------------------------------------------------
Confidence 0123666777777666677777765311
Q ss_pred ccccCCCccccccCCCCCChh-HHHHHHHHHHHcc-------CCCEEEEecCCCCCCHH-------HH-----HHHHHHH
Q 040758 675 ILPRLNSLDTTYEWSSVLSLG-EQQRLAFARLLLS-------KPQIVLLDESTSALDEA-------NE-----AHLYEQI 734 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGG-QrQRiaIARALl~-------~p~iLiLDEpTSaLD~~-------se-----~~i~~~L 734 (788)
.+++ +++.+..+++++. +|++++|||||+.+|++ .+ ..+.+.|
T Consensus 100 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 100 -----------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp -----------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred -----------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 1222 2233444444444 99999999999999984 22 1344443
Q ss_pred H----hcCCEEEEEecC----cc-hhhcCCEEEEEccCC
Q 040758 735 E----AAGITYISVGHR----RT-LYDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~----~~g~TvI~IaHr----~~-~~~~~D~Ilvl~~g~ 764 (788)
. +.|.|+|+++|. .. +...||++++|++|+
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 2 359999999994 33 345799999999864
No 90
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.72 E-value=1.1e-18 Score=214.44 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=111.5
Q ss_pred CcEEEee-----eEEEcCCCCccceeeeeEEEeC-------CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC
Q 040758 497 KLLDIED-----LTLKTPTSKATLVRDLSLVINE-------KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR 564 (788)
Q Consensus 497 ~~I~~~n-----vsf~y~~~~~~vL~~isl~i~~-------Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~ 564 (788)
+.|+++| |++.|++ ++.+++|++|++++ |++++|+||||||||||+|++ |+..+-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------- 815 (1022)
T ss_dssp CCEEEEEECCCC------C-CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC-CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-----------
Confidence 4699999 9999953 46799999999987 999999999999999999999 986530
Q ss_pred cccccCCCccchhhhcccccccchhcccccCcceEE-EEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 565 EETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF-FLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 565 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~-~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
.++| ||||++. ..|+.|||... .
T Consensus 816 --------------------------------aqiG~~Vpq~~~--~l~v~d~I~~r-i--------------------- 839 (1022)
T 2o8b_B 816 --------------------------------AQMGCYVPAEVC--RLTPIDRVFTR-L--------------------- 839 (1022)
T ss_dssp --------------------------------HTTTCCEESSEE--EECCCSBEEEE-C---------------------
T ss_pred --------------------------------hheeEEeccCcC--CCCHHHHHHHH-c---------------------
Confidence 1245 8999873 34555555210 0
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
++. +......+++|+++++ +++|++++.+|+++||||||+|+|
T Consensus 840 ---------------------------g~~---------d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd 882 (1022)
T 2o8b_B 840 ---------------------------GAS---------DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTA 882 (1022)
T ss_dssp ---------------------------C------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSC
T ss_pred ---------------------------CCH---------HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCC
Confidence 000 0000112457887775 999999999999999999999999
Q ss_pred HHHH-HHHH---HHHHhc-CCEEEEEecCcchhh-cCCEEEEEc
Q 040758 724 EANE-AHLY---EQIEAA-GITYISVGHRRTLYD-FHKRVLRIS 761 (788)
Q Consensus 724 ~~se-~~i~---~~L~~~-g~TvI~IaHr~~~~~-~~D~Ilvl~ 761 (788)
+... ..+. +.|.+. |.|+|++||+.++.. .+|++.+++
T Consensus 883 ~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~ 926 (1022)
T 2o8b_B 883 TFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL 926 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec
Confidence 8874 3333 444444 999999999988764 688887763
No 91
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.72 E-value=1.3e-17 Score=160.82 Aligned_cols=76 Identities=33% Similarity=0.347 Sum_probs=68.7
Q ss_pred cCCCCCChhHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEE
Q 040758 687 EWSSVLSLGEQQRLAFA------RLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIA------RALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~I 757 (788)
..+.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.+ .|+|+|+|||+.+....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 34678999999999876 999999999999999999999999999998864 489999999999878899999
Q ss_pred EEEcc
Q 040758 758 LRIST 762 (788)
Q Consensus 758 lvl~~ 762 (788)
++|++
T Consensus 133 i~l~~ 137 (148)
T 1f2t_B 133 IRISL 137 (148)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99964
No 92
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=9.3e-19 Score=202.52 Aligned_cols=177 Identities=17% Similarity=0.169 Sum_probs=114.9
Q ss_pred EeeeEEEcCCCCccceeeeeE-EEeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 501 IEDLTLKTPTSKATLVRDLSL-VINEKEHLLVMGPSGSGKTSLLRA--MAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl-~i~~Ge~iaIvG~sGsGKSTLl~l--L~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++. +|++ +.++|+|+|| .|++|++++|+||||||||||+++ +.|+++|++|.|+++|.+ ..
T Consensus 15 ~~~~~-~~~~-g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~---~~--------- 80 (525)
T 1tf7_A 15 HQAIA-KMRT-MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE---TP--------- 80 (525)
T ss_dssp CSSCC-EECC-CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS---CH---------
T ss_pred ccccc-cccC-CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC---CH---------
Confidence 34443 3443 5679999999 999999999999999999999999 789999999999996543 10
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
......++.+|+++|++... +|+.+-..... .. ..
T Consensus 81 ------------~~~~~~~~~~g~~~q~~~~~-----~~l~~~~~~~~-~~---------~~------------------ 115 (525)
T 1tf7_A 81 ------------QDIIKNARSFGWDLAKLVDE-----GKLFILDASPD-PE---------GQ------------------ 115 (525)
T ss_dssp ------------HHHHHHHGGGTCCHHHHHHT-----TSEEEEECCCC-SS---------CC------------------
T ss_pred ------------HHHHHHHHHcCCChHHhhcc-----CcEEEEecCcc-cc---------hh------------------
Confidence 01112235689999987521 12221000000 00 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC-----CCHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA-----LDEANEAHLYE 732 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSa-----LD~~se~~i~~ 732 (788)
++++.++++... ......||||| |++++|||||+. ||+...+.+.+
T Consensus 116 -------~~l~~~~l~~~~---------~~~~~~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ 166 (525)
T 1tf7_A 116 -------EVVGGFDLSALI---------ERINYAIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFR 166 (525)
T ss_dssp -------SCCSSHHHHHHH---------HHHHHHHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHH
T ss_pred -------hhhcccCHHHHH---------HHHHHHHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHH
Confidence 000001110000 00112266664 789999999984 58888888887
Q ss_pred HHH---hcCCEEEEEecCcchh---------hc-CCEEEEEccCCC
Q 040758 733 QIE---AAGITYISVGHRRTLY---------DF-HKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~---~~g~TvI~IaHr~~~~---------~~-~D~Ilvl~~g~~ 765 (788)
.++ +.|+|+|+|+|+++.+ .+ ||+|++|++|..
T Consensus 167 ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 167 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp HHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred HHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 765 3699999999998753 44 999999998643
No 93
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.70 E-value=1e-18 Score=182.16 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=95.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------------------------------- 55 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------------------------------- 55 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-------------------------------
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-------------------------------
Confidence 567999999999999999999999999999999999976 555431
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
..++.+++++|+.+....|+.+|+.+........ .....+.+.+.+.|+.+.
T Consensus 56 --~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~L~~l~ 107 (245)
T 2jeo_A 56 --QRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFD--------------------------HPDAFDNDLMHRTLKNIV 107 (245)
T ss_dssp --GGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTT--------------------------SGGGBCHHHHHHHHHHHH
T ss_pred --ccCCceEEEeCCcCccccCHhHhhhhhccCCCCC--------------------------CcccccHHHHHHHHHHHH
Confidence 1235699999997444458888875421100000 000012233444444321
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEecC
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-AGITYISVGHR 747 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaHr 747 (788)
. +. ......||+||+||+++ ++++.+|+++|||||....|.. +.+ .+.|++++||.
T Consensus 108 --~------~~---~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~~~~~i~v~th~ 164 (245)
T 2jeo_A 108 --E------GK---TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDMFHLRLFVDTDS 164 (245)
T ss_dssp --T------TC---CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTTCSEEEEEECCH
T ss_pred --C------CC---CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHhcCeEEEEECCH
Confidence 0 11 11234699999999988 6889999999999998888754 222 48999999997
No 94
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.70 E-value=1.2e-18 Score=180.50 Aligned_cols=180 Identities=12% Similarity=0.120 Sum_probs=104.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh--cCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA--GLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~--gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
++++++++..++. -..++.+ .|++|++++|+||||||||||+++|+ |+.++.+|.+.+++.+ ..
T Consensus 6 ~~~~~~i~tg~~~-lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~---~~------- 71 (251)
T 2ehv_A 6 YQPVRRVKSGIPG-FDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE---RA------- 71 (251)
T ss_dssp --CCCEECCSCTT-TGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS---CH-------
T ss_pred ccccceeecCCHh-HHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC---CH-------
Confidence 3566777766642 1123333 79999999999999999999999999 7756777777774321 10
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.......+.+++++|+...+.. ++.++......
T Consensus 72 --------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 105 (251)
T 2ehv_A 72 --------------RDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG-------------------------------- 105 (251)
T ss_dssp --------------HHHHHHHHTTTCCHHHHHHTTSEEEEC---------------------------------------
T ss_pred --------------HHHHHHHHHcCCChHHHhhcCCEEEEEccccccc--------------------------------
Confidence 0000112346777776532211 11111110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC-----HHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD-----EANEAH 729 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD-----~~se~~ 729 (788)
. ...+... .....+.++.++...+..-..+|++++|||||++|| +...+.
T Consensus 106 --~-~~~~~~~----------------------~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~ 160 (251)
T 2ehv_A 106 --L-PSEEKFV----------------------LEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREV 160 (251)
T ss_dssp -------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHH
T ss_pred --c-cccccee----------------------ccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHH
Confidence 0 0000000 001133445554444444568999999999999997 566555
Q ss_pred HHHHH---HhcCCEEEEEecCcchh----------hcC-CEEEEEcc
Q 040758 730 LYEQI---EAAGITYISVGHRRTLY----------DFH-KRVLRIST 762 (788)
Q Consensus 730 i~~~L---~~~g~TvI~IaHr~~~~----------~~~-D~Ilvl~~ 762 (788)
+.+.+ ++.|+|+|++||+++.. ..| |+|++|++
T Consensus 161 l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 161 LLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 66554 44799999999997653 677 99999964
No 95
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.70 E-value=2.5e-17 Score=200.30 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=62.7
Q ss_pred CChhHHHHHHHHHHH--ccCCCEEEEecCCCCCCHHHHHHH----HHHHHh-cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 692 LSLGEQQRLAFARLL--LSKPQIVLLDESTSALDEANEAHL----YEQIEA-AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 692 LSGGQrQRiaIARAL--l~~p~iLiLDEpTSaLD~~se~~i----~~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ .+.+.+ .|.|+|++||+.++...||++..+.+|.
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~ 801 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEE
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeE
Confidence 888888888888888 999999999999999999887666 333444 5999999999999999999998888876
Q ss_pred C
Q 040758 765 Q 765 (788)
Q Consensus 765 ~ 765 (788)
.
T Consensus 802 v 802 (934)
T 3thx_A 802 V 802 (934)
T ss_dssp E
T ss_pred E
Confidence 4
No 96
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.70 E-value=9.8e-20 Score=184.80 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=104.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
.++|+++||+||||||||||+++|+|++.| .++++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------------------------------~i~~v 37 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------------------------------RVALL 37 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------------------------------GEEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------------------------------CeEEE
Confidence 578999999999999999999999998754 16789
Q ss_pred ccccccCCC---CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccC
Q 040758 603 PQRPYMVLG---SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRL 679 (788)
Q Consensus 603 ~Q~~~lf~~---Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 679 (788)
+|+++++.. |+.+|+.+..... ...+.+.+.+.++.+++......
T Consensus 38 ~~d~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~- 85 (211)
T 3asz_A 38 PMDHYYKDLGHLPLEERLRVNYDHP-------------------------------DAFDLALYLEHAQALLRGLPVEM- 85 (211)
T ss_dssp EGGGCBCCCTTSCHHHHHHSCTTSG-------------------------------GGBCHHHHHHHHHHHHTTCCEEE-
T ss_pred ecCccccCcccccHHHhcCCCCCCh-------------------------------hhhhHHHHHHHHHHHHcCCCcCC-
Confidence 999988743 6666654321000 00123456666666655433222
Q ss_pred CCccccccCCCCCChhH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHHHHHHHHHh----cCCEEEEE
Q 040758 680 NSLDTTYEWSSVLSLGE----QQRLAFARLLLSKPQIVLLDESTSA-------LDEANEAHLYEQIEA----AGITYISV 744 (788)
Q Consensus 680 ~g~~t~~e~g~~LSGGQ----rQRiaIARALl~~p~iLiLDEpTSa-------LD~~se~~i~~~L~~----~g~TvI~I 744 (788)
.+..+|+|| +||+++||+++.+|+++++||||++ ||+..+..+.+.+.+ .|+|++.+
T Consensus 86 --------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~ 157 (211)
T 3asz_A 86 --------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGV 157 (211)
T ss_dssp --------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred --------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHH
Confidence 244588885 5799999999999999999999999 999999988887754 49999999
Q ss_pred ecCc
Q 040758 745 GHRR 748 (788)
Q Consensus 745 aHr~ 748 (788)
+|+.
T Consensus 158 ~~~~ 161 (211)
T 3asz_A 158 VAQY 161 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9983
No 97
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.68 E-value=6.2e-20 Score=203.27 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=127.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.+.+ +. .
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~---~e-----------------------~ 177 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP---IE-----------------------Y 177 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS---CC-----------------------S
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc---Hh-----------------------h
Confidence 3577766 8999999999999999999999999999998 8999774321 10 0
Q ss_pred ccCcceEEEEcc-----ccccCCCCHHHHhcCCCCcc-------ccchhhHHHHhcCCc-cchhhhhhhhhhccCCCCCC
Q 040758 593 NRNSRGVFFLPQ-----RPYMVLGSLRQQLIYPTWTE-------EVKPASDAAKSAGLV-PFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 593 ~~~r~~i~~v~Q-----~~~lf~~Ti~eNi~~~~~~~-------~~~~~~~aa~~~~~~-~~i~~~~~~~~~~~~~~~~~ 659 (788)
..+..+++|+| ++..|.+++++|+++. ++. +.+.+..+.+.++.. ..+... ...+
T Consensus 178 -~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~----------H~~~ 245 (372)
T 2ewv_A 178 -VFKHKKSIVNQREVGEDTKSFADALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTL----------HTNT 245 (372)
T ss_dssp -CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECC----------CCCS
T ss_pred -hhccCceEEEeeecCCCHHHHHHHHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEE----------Ccch
Confidence 23456899999 8889999999999973 322 222333333333221 111110 0111
Q ss_pred hHHHHHHHHhccccc----ccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCE--EEEecCCCCCCHH----H-
Q 040758 660 TDDLIKALEDVKLGY----ILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQI--VLLDESTSALDEA----N- 726 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~----~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~i--LiLDEpTSaLD~~----s- 726 (788)
..++.+.+-.+.... ... ..++++.. .+++..+||| ||++|||+++.+|++ +|+||+|++||.. +
T Consensus 246 ~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~ 323 (372)
T 2ewv_A 246 AIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQA 323 (372)
T ss_dssp HHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHH
Confidence 122222111111100 000 01356654 5666668999 999999999999999 9999999999965 2
Q ss_pred ----HHHHHHHHHh--cCCEEEEEecCcc
Q 040758 727 ----EAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 727 ----e~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
+..++++++. .|+|.+.++||.+
T Consensus 324 ~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 324 ETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp ---CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred hcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 2345666664 6999999999976
No 98
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.66 E-value=1.8e-17 Score=182.15 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=103.7
Q ss_pred eeeEEEcCCCCccceeeeeE-------EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCc
Q 040758 502 EDLTLKTPTSKATLVRDLSL-------VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl-------~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~ 573 (788)
.+++++|.....+.|+++.+ .+.+|+.++|+||||||||||+++|+|+++|+ +|.|... .|-.+.
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-ed~~e~------ 164 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-EDPIEF------ 164 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-ESSCCS------
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-cCcHHh------
Confidence 45666664444556777776 78899999999999999999999999999997 5666542 111110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
..+...++++|.....
T Consensus 165 --------------------~~~~~~~~v~q~~~~~-------------------------------------------- 180 (356)
T 3jvv_A 165 --------------------VHESKKCLVNQREVHR-------------------------------------------- 180 (356)
T ss_dssp --------------------CCCCSSSEEEEEEBTT--------------------------------------------
T ss_pred --------------------hhhccccceeeeeecc--------------------------------------------
Confidence 0112234455543100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
..++-.+ +|||||.++|++|++|||| |.++...+.+.
T Consensus 181 ------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~ 217 (356)
T 3jvv_A 181 ------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTA 217 (356)
T ss_dssp ------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred ------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH
Confidence 0022222 8999999999999999999 77776655554
Q ss_pred HHhcCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 734 IEAAGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
.+.|+|+|+++|+.+....+||+++|..|
T Consensus 218 -~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 218 -AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp -HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred -HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 34599999999999988889999988554
No 99
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.66 E-value=1.7e-18 Score=203.28 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=106.7
Q ss_pred cEEEeeeEEEcCCCCccceeee----------eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEEeeccCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDL----------SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITFYVKDREE 566 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~i----------sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~~~~~~~~ 566 (788)
.++++|+++.|+...+++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|.++|.+
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~--- 83 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLV--- 83 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEE---
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEE---
Confidence 4889999999964334555555 366665 999999999999999999999988 89999985433
Q ss_pred cccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhh
Q 040758 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645 (788)
Q Consensus 567 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~ 645 (788)
+.. ........+++.++|++|++.+++. |+++||.+....
T Consensus 84 i~~-----------------~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~---------------------- 124 (608)
T 3szr_A 84 LKL-----------------KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA---------------------- 124 (608)
T ss_dssp EEE-----------------EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH----------------------
T ss_pred EEE-----------------ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH----------------------
Confidence 210 0001123467789999999988764 888888542100
Q ss_pred hhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecC------C
Q 040758 646 QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDES------T 719 (788)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEp------T 719 (788)
.+.. +..+| ++++.++.+...+|+++++||| |
T Consensus 125 -----~~~~----------------------------------~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 125 -----IAGE----------------------------------GMGIS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp -----HHCS----------------------------------SSCCC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred -----hcCC----------------------------------ccccc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 0000 00011 1222233333458999999999 9
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCEEEEEecCcchh--------h-----cCCEEEEEccCCCCC
Q 040758 720 SALDEANEAHLYEQIEA-----AGITYISVGHRRTLY--------D-----FHKRVLRISTVDQNS 767 (788)
Q Consensus 720 SaLD~~se~~i~~~L~~-----~g~TvI~IaHr~~~~--------~-----~~D~Ilvl~~g~~~~ 767 (788)
++||+..+..+.+.+++ .+.++++++|+.+.. + ....|+|+.+++...
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 99999999988887754 378899999997632 1 135689999987543
No 100
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.66 E-value=1.1e-16 Score=194.08 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=55.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH-H---HHHh-cCCEEEEEecCcchhhcCCE
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY-E---QIEA-AGITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~-~---~L~~-~g~TvI~IaHr~~~~~~~D~ 756 (788)
+++|+|++|+..|+++ +.+|+++||||||+|||+.....+. . .+.+ .|.|+|++||+.++..+||+
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 5699999999999999 8999999999999999998877665 3 3333 59999999999888766553
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.65 E-value=3e-17 Score=176.67 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|..... ...+...-..+.++++|+|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~-----------------a~~ql~~~~~~~~i~~v~q 163 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA-----------------GGTQLSEWGKRLSIPVIQG 163 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT-----------------TTHHHHHHHHHHTCCEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChh-----------------HHHHHHHHHHhcCceEEEe
Confidence 69999999999999999999999999999999999654422110 0000000001346999999
Q ss_pred ccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcc
Q 040758 605 RPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD 683 (788)
Q Consensus 605 ~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 683 (788)
++.++.. |+.+|+.++.. .+.... +++..+..+
T Consensus 164 ~~~~~p~~~v~~~v~~~~~-------------~~~d~~---------------------------------llDt~G~~~ 197 (304)
T 1rj9_A 164 PEGTDSAALAYDAVQAMKA-------------RGYDLL---------------------------------FVDTAGRLH 197 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHH-------------HTCSEE---------------------------------EECCCCCCT
T ss_pred CCCCCHHHHHHHHHHHHHh-------------CCCCEE---------------------------------EecCCCCCC
Confidence 9877653 77888754210 000000 000000000
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecCcchhhc-------
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHRRTLYDF------- 753 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr~~~~~~------- 753 (788)
.. ...++..++||++||||+..+|+ +|.|| |+++.|... .+ ..+. ..|.|+|++||..+..+.
T Consensus 198 ~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~--~~-~~~~~~~~~t~iivTh~d~~a~gg~~l~i~ 270 (304)
T 1rj9_A 198 TK---HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE--QA-KKFHEAVGLTGVIVTKLDGTAKGGVLIPIV 270 (304)
T ss_dssp TC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH--HH-HHHHHHHCCSEEEEECTTSSCCCTTHHHHH
T ss_pred ch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH--HH-HHHHHHcCCcEEEEECCcccccccHHHHHH
Confidence 00 01145556999999999999999 66677 555544322 22 2233 359999999997543222
Q ss_pred ---CCEEEEEccCCC
Q 040758 754 ---HKRVLRISTVDQ 765 (788)
Q Consensus 754 ---~D~Ilvl~~g~~ 765 (788)
.-.|..+..|..
T Consensus 271 ~~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 271 RTLKVPIKFVGVGEG 285 (304)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHHCCCeEEEeCCCC
Confidence 246777777643
No 102
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.65 E-value=1.1e-17 Score=184.41 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=109.9
Q ss_pred EEeeeEEE---cCCCCccce---------eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 500 DIEDLTLK---TPTSKATLV---------RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 500 ~~~nvsf~---y~~~~~~vL---------~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+|+||+|+ |++.++++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 863234555 9999999999999999999999999999999999999999999632 111
Q ss_pred ccCCCccchhhhcccccccchhcccccCcceEEEEc-cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 568 DAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP-QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~-Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
.....++.+++++ |++.+
T Consensus 215 -----------------------~~~~~~~~v~~v~~q~~~~-------------------------------------- 233 (361)
T 2gza_A 215 -----------------------FLPDHPNHVHLFYPSEAKE-------------------------------------- 233 (361)
T ss_dssp -----------------------CCTTCSSEEEEECC-------------------------------------------
T ss_pred -----------------------CccccCCEEEEeecCcccc--------------------------------------
Confidence 1112456799998 76532
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
.++++..+|-.|++++-.+|+.+++||++.+ +.
T Consensus 234 --------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~ 266 (361)
T 2gza_A 234 --------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRGG---EA 266 (361)
T ss_dssp -------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCST---HH
T ss_pred --------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchHH---HH
Confidence 0123334566677788889999999999862 22
Q ss_pred HHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 727 EAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 727 e~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
. .+.+.+.....|++...|..+....+||+..+..+.
T Consensus 267 ~-~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 267 Y-DFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp H-HHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred H-HHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 2 233444444567899999988777788887776653
No 103
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.65 E-value=1.5e-19 Score=199.65 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=66.0
Q ss_pred ceeeeeEEEeC--CCEEEEEcCCCCcHHHHHHHHhcCCCCCC----ceEEEeec-cCcccccCCCccchhhhcccccccc
Q 040758 515 LVRDLSLVINE--KEHLLVMGPSGSGKTSLLRAMAGLWSDGR----GKITFYVK-DREETDAHTSDVDSLEVNSQNMNGE 587 (788)
Q Consensus 515 vL~~isl~i~~--Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~----G~I~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 587 (788)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.+++. ++.++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~------------------- 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQA------------------- 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTS-------------------
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCccc-------------------
Confidence 35789999999 99999999999999999999999999999 88876321 111110
Q ss_pred hhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 588 LTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 588 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
.....+ +.|++++|++.+|..|++|||.++.
T Consensus 218 --~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~ 248 (365)
T 1lw7_A 218 --MQYSDY-PQMALGHQRYIDYAVRHSHKIAFID 248 (365)
T ss_dssp --SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEES
T ss_pred --CChhHH-HHHHHHHHHHHHHHHhccCCEEEEe
Confidence 011112 3488999999999999999998754
No 104
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.65 E-value=1.6e-17 Score=178.70 Aligned_cols=163 Identities=11% Similarity=0.087 Sum_probs=80.3
Q ss_pred eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC-CCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 502 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL-WSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl-~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
+||++.|+ ++.++++++|+| +|+||||||||||++.|.|. ..|++| |.++|. ++.
T Consensus 2 ~~l~~~~~--~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~---~~~------------ 57 (301)
T 2qnr_A 2 SNLPNQVH--RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAE---KIE------------ 57 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------------
T ss_pred CCCcceEC--CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCc---ccC------------
Confidence 47788885 467999999998 99999999999999999998 889999 776432 221
Q ss_pred ccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
... . .+.+++++|+..++ .-|+.|+..++......+ .
T Consensus 58 ---------~t~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e-------------------------------~ 95 (301)
T 2qnr_A 58 ---------RTV-Q-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRD-------------------------------C 95 (301)
T ss_dssp ------------------CEEEEC---CCEEEEEEEEC------------------------------------------
T ss_pred ---------Ccc-e-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHH-------------------------------H
Confidence 000 1 23478999987654 347777776643210000 0
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC-CCHHHHHHHHHHHHh-c
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA-LDEANEAHLYEQIEA-A 737 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSa-LD~~se~~i~~~L~~-~ 737 (788)
...+.+.+... ......++|||||||+++|||++ +|++||||++ ||+... .+.+.+.+ .
T Consensus 96 ~~~l~~~l~~~--------------~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~-~~l~~l~~~~ 156 (301)
T 2qnr_A 96 FKTIISYIDEQ--------------FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV-AFMKAIHNKV 156 (301)
T ss_dssp CTTHHHHHHHH--------------HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH-HHHHHHTTTS
T ss_pred HHHHHHHHHHH--------------HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH-HHHHHHHhcC
Confidence 00011111100 00112349999999999999986 9999999985 999875 44444444 4
Q ss_pred CCEEEEEecCcc
Q 040758 738 GITYISVGHRRT 749 (788)
Q Consensus 738 g~TvI~IaHr~~ 749 (788)
+.++|+..|++.
T Consensus 157 ~iilV~~K~Dl~ 168 (301)
T 2qnr_A 157 NIVPVIAKADTL 168 (301)
T ss_dssp CEEEEECCGGGS
T ss_pred CEEEEEEeCCCC
Confidence 788899999963
No 105
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=3.5e-18 Score=172.37 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=91.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEEeec----cCcccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW-----SDGRGKITFYVK----DREETD 568 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~-----~p~~G~I~~~~~----~~~~i~ 568 (788)
.|+++|++|.|+ .+++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+.+. ++..+
T Consensus 3 ~l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l- 76 (210)
T 1pui_A 3 NLNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL- 76 (210)
T ss_dssp --------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-
T ss_pred chhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-
Confidence 478999999995 357888 899999999999999999999999999998 788887754210 00000
Q ss_pred cCCCccchhhhcccccccchhc--c---cccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccch
Q 040758 569 AHTSDVDSLEVNSQNMNGELTR--S---MNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFL 642 (788)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~--~---~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i 642 (788)
.|..+.... + ...+++.+++++|+...+++ ++..++..
T Consensus 77 -------------~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------------------- 120 (210)
T 1pui_A 77 -------------VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH----------------------- 120 (210)
T ss_dssp -------------EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-----------------------
T ss_pred -------------EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-----------------------
Confidence 000000000 0 00000011111111100000 00000000
Q ss_pred hhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHH-HHHHHHHccCCCEEEEecCCCC
Q 040758 643 TSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQR-LAFARLLLSKPQIVLLDESTSA 721 (788)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQR-iaIARALl~~p~iLiLDEpTSa 721 (788)
.....+.++.+.+...++.... .......+|+||||| +..+|+++++|+++++||||||
T Consensus 121 ------------~~~~~~~~~~~~~~~~~~~~~~--------v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 180 (210)
T 1pui_A 121 ------------PLKDLDQQMIEWAVDSNIAVLV--------LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS 180 (210)
T ss_dssp ------------CCCHHHHHHHHHHHHTTCCEEE--------EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred ------------CCchhHHHHHHHHHHcCCCeEE--------EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEee
Confidence 0000112344444443332110 122344599999999 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 040758 722 LDEANEAHLYEQIEA 736 (788)
Q Consensus 722 LD~~se~~i~~~L~~ 736 (788)
+|.....++.+.|.+
T Consensus 181 l~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 181 LKKQGVDKLRQKLDT 195 (210)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999988864
No 106
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.63 E-value=4.2e-17 Score=182.57 Aligned_cols=165 Identities=9% Similarity=0.096 Sum_probs=99.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|.++||++.|+ ++.+++|+||+| +|||+||||||||+++|+|...|..|. ++..+.
T Consensus 10 ~~l~~~~l~~~y~--~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~------~~~~~~-------- 67 (418)
T 2qag_C 10 GYVGFANLPNQVY--RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY------PGPSHR-------- 67 (418)
T ss_dssp -----CCCCCCTT--TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC------CSCC----------
T ss_pred CcEEEEecceeEC--CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC------CCcccC--------
Confidence 5699999999996 467999999998 999999999999999999998866551 111110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ... ..+..+++++|++.++ ..||.||+.++.....
T Consensus 68 ----~-------~~t--~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------------------------------ 104 (418)
T 2qag_C 68 ----I-------KKT--VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------------------------------ 104 (418)
T ss_dssp --------------C--CEEEEEECC------CEEEEEEECC--------------------------------------
T ss_pred ----C-------ccc--eeeeeEEEEEecCCcccceeeeechhhhhhccc------------------------------
Confidence 0 000 1124589999988776 4589998877632100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC---EEEEecCC-CCCCHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ---IVLLDEST-SALDEANEAHLY 731 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~---iLiLDEpT-SaLD~~se~~i~ 731 (788)
......+.+.++. .++.+++||++||||++++|+ +|++|||| ++||+... .++
T Consensus 105 -~~~~~~i~~~i~~---------------------~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~l 161 (418)
T 2qag_C 105 -SNCWQPVIDYIDS---------------------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFM 161 (418)
T ss_dssp ----CHHHHHHHHH---------------------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHH
T ss_pred -hhhHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHH
Confidence 0001122222221 166777889999999999999 99999999 69998764 444
Q ss_pred HHHHhcCCEEEEEecCcch
Q 040758 732 EQIEAAGITYISVGHRRTL 750 (788)
Q Consensus 732 ~~L~~~g~TvI~IaHr~~~ 750 (788)
+.|.. +.++|+|.|..++
T Consensus 162 k~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 162 KRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp HHHTT-TSEEEEEEESTTS
T ss_pred HHHhc-cCcEEEEEEcccC
Confidence 55554 7888888887654
No 107
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.63 E-value=2.1e-19 Score=181.59 Aligned_cols=156 Identities=14% Similarity=0.197 Sum_probs=97.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS-------------DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-------------p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
++|++++|+||||||||||+++|+|+++ |..|++ + |.++. . .
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~---g~~~~-----------------~---~ 56 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--D---GKDYY-----------------F---V 56 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--B---TTTBE-----------------E---C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--C---CceEE-----------------E---c
Confidence 5899999999999999999999999986 566652 2 22221 0 0
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
+...+++. ++|+++++.+++.+|+ ||... +++.++++..
T Consensus 57 ~~~~~~~~---i~~~~~l~~~~~~~n~-~g~~~-------------------------------------~~i~~~~~~~ 95 (198)
T 1lvg_A 57 TREMMQRD---IAAGDFIEHAEFSGNL-YGTSK-------------------------------------EAVRAVQAMN 95 (198)
T ss_dssp CHHHHHHH---HHHTCEEEEEEETTEE-EEEEH-------------------------------------HHHHHHHHTT
T ss_pred cHHHHHHH---HHcCCCEeeeeecCcc-CCCCH-------------------------------------HHHHHHHHcC
Confidence 11122222 3789999999999998 76321 1222222211
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHH-HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFAR-LLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHR 747 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIAR-ALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr 747 (788)
......-.++|+++.... ++ .|| +++.+|++++|||+|+++|.++|+.|++.|.+ .+ +.++|
T Consensus 96 ~~~~~~~~~~g~~~~~~~----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~- 160 (198)
T 1lvg_A 96 RICVLDVDLQGVRSIKKT----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSK- 160 (198)
T ss_dssp CEEEEECCHHHHHHHTTS----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG-
T ss_pred CcEEEECCHHHHHHHHhc----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh-
Confidence 100000001222222110 12 567 89999999999999999999999999998864 23 35567
Q ss_pred cchhhcCCEEEEEcc
Q 040758 748 RTLYDFHKRVLRIST 762 (788)
Q Consensus 748 ~~~~~~~D~Ilvl~~ 762 (788)
+. ..+|+|+++++
T Consensus 161 -~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 161 -EP-GLFDLVIINDD 173 (198)
T ss_dssp -ST-TTCSEEEECSS
T ss_pred -cc-CCceEEEECCC
Confidence 33 77899988864
No 108
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.62 E-value=7.3e-17 Score=177.13 Aligned_cols=139 Identities=16% Similarity=0.104 Sum_probs=102.5
Q ss_pred cceeee-eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCC----ce-EEEeeccCcccccCCCccchhhhcccccc
Q 040758 514 TLVRDL-SLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGR----GK-ITFYVKDREETDAHTSDVDSLEVNSQNMN 585 (788)
Q Consensus 514 ~vL~~i-sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~----G~-I~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 585 (788)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+ .
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~---~------------------ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN---T------------------ 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS---C------------------
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC---C------------------
Confidence 457666 6899999999999999999999999999998 6766 67 7774321 1
Q ss_pred cchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHH
Q 040758 586 GELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665 (788)
Q Consensus 586 ~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 665 (788)
..++++++++|++.++..++.+||.+....
T Consensus 177 --------~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~------------------------------------------ 206 (349)
T 1pzn_A 177 --------FRPERIREIAQNRGLDPDEVLKHIYVARAF------------------------------------------ 206 (349)
T ss_dssp --------CCHHHHHHHHHTTTCCHHHHGGGEEEEECC------------------------------------------
T ss_pred --------CCHHHHHHHHHHcCCCHHHHhhCEEEEecC------------------------------------------
Confidence 012447788898888777888887653100
Q ss_pred HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc-------cCCCEEEEecCCCCCCHHH------------
Q 040758 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL-------SKPQIVLLDESTSALDEAN------------ 726 (788)
Q Consensus 666 ~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl-------~~p~iLiLDEpTSaLD~~s------------ 726 (788)
-|++|+|++.++++++ .+|++||+||||+++|++.
T Consensus 207 --------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~ 260 (349)
T 1pzn_A 207 --------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQK 260 (349)
T ss_dssp --------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHH
T ss_pred --------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHH
Confidence 1456777777777777 6899999999999999862
Q ss_pred HHHHHHHHH----hcCCEEEEEecCcc
Q 040758 727 EAHLYEQIE----AAGITYISVGHRRT 749 (788)
Q Consensus 727 e~~i~~~L~----~~g~TvI~IaHr~~ 749 (788)
...+...|. +.|+|+|+++|...
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 123333333 25999999999754
No 109
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.61 E-value=9.8e-16 Score=151.42 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=67.1
Q ss_pred cCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 687 EWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.+...||||||||++|||+|+ ++|+++||||||++||+.++..+.+.|++ .+.++|+|||+..+...||+++.+
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v 139 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGV 139 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEE
Confidence 345679999999999999996 55799999999999999999999999875 578999999999888999999977
Q ss_pred c
Q 040758 761 S 761 (788)
Q Consensus 761 ~ 761 (788)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 5
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.60 E-value=1.1e-15 Score=185.14 Aligned_cols=90 Identities=29% Similarity=0.354 Sum_probs=76.1
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHh---c
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIEA---A 737 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~~---~ 737 (788)
..+.|..+++++.. ......+|||||||||+|||||+++|+ +|||||||++||+.....+.+.|++ .
T Consensus 444 ~~~~L~~vgL~~l~--------l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 444 RLEFLVDVGLEYLT--------LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp HHHHHHTTTCTTCB--------TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred HHHHHHHcCCcccc--------ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 34556666655421 233456799999999999999999887 9999999999999999999998875 5
Q ss_pred CCEEEEEecCcchhhcCCEEEEE
Q 040758 738 GITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
|.|+|+|+|+++++..||+|++|
T Consensus 516 G~TvivVtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 516 GNTVIVVEHDEEVIRNADHIIDI 538 (916)
T ss_dssp TCEEEEECCCHHHHHTCSEEEEE
T ss_pred CCEEEEEeCCHHHHHhCCEEEEE
Confidence 89999999999988889999999
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.59 E-value=1.8e-15 Score=154.41 Aligned_cols=167 Identities=10% Similarity=0.050 Sum_probs=107.8
Q ss_pred CccceeeeeE-EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 512 KATLVRDLSL-VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 512 ~~~vL~~isl-~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
+.+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.+.+.+.+...-
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~----------------------- 64 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRD----------------------- 64 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHH-----------------------
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHH-----------------------
Confidence 4567899988 8999999999999999999999999998888888888743221000
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
........+++.+|+... +++.+ +
T Consensus 65 ~~~~~~~~~~~~~~~~~~------~~~~~----------------------~---------------------------- 88 (235)
T 2w0m_A 65 SIIRQAKQFNWDFEEYIE------KKLII----------------------I---------------------------- 88 (235)
T ss_dssp HHHHHHHHTTCCCGGGBT------TTEEE----------------------E----------------------------
T ss_pred HHHHHHHHhcchHHHHhh------CCEEE----------------------E----------------------------
Confidence 000000012222222100 00000 0
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHHHHHHHHHH----hcCCEEE
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSAL--DEANEAHLYEQIE----AAGITYI 742 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaL--D~~se~~i~~~L~----~~g~TvI 742 (788)
+...... +.... ....|.+|.++...+.+...+|+ ++++||||+.+ |+.....+.+.|+ +.|.|+|
T Consensus 89 --~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi 162 (235)
T 2w0m_A 89 --DALMKEK-EDQWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIY 162 (235)
T ss_dssp --ECCC-----CTTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEE
T ss_pred --ecccccc-Cceee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEE
Confidence 0000000 00000 11259999999888888888999 99999999888 9877777777664 3589999
Q ss_pred EEecCc--------c-hhhcCCEEEEEccC
Q 040758 743 SVGHRR--------T-LYDFHKRVLRISTV 763 (788)
Q Consensus 743 ~IaHr~--------~-~~~~~D~Ilvl~~g 763 (788)
+++|.. . +...||+|++|+..
T Consensus 163 ~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 163 ATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEC-----------CHHHHCSEEEEEEEE
T ss_pred EEeccCcccccccccchheeeeEEEEEEEE
Confidence 999997 2 45679999999865
No 112
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.58 E-value=3e-18 Score=169.26 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=31.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeecc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKD 563 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~ 563 (788)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 689999999999999999999999998 8999996544
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.56 E-value=4.8e-15 Score=179.13 Aligned_cols=89 Identities=28% Similarity=0.358 Sum_probs=75.1
Q ss_pred HHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccC--CCEEEEecCCCCCCHHHHHHHHHHHH---hcCC
Q 040758 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK--PQIVLLDESTSALDEANEAHLYEQIE---AAGI 739 (788)
Q Consensus 665 ~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~--p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~ 739 (788)
+.|..+|++++ +......+|||||||||+||++|..+ |++|||||||++||+...+.+.+.|+ +.|.
T Consensus 503 ~~L~~vGL~~l--------~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~ 574 (993)
T 2ygr_A 503 GFLLDVGLEYL--------SLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGN 574 (993)
T ss_dssp HHHHHHTGGGS--------CTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhCCCCcc--------ccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCC
Confidence 34666666643 11234567999999999999999999 59999999999999999999988765 4799
Q ss_pred EEEEEecCcchhhcCCEEEEEc
Q 040758 740 TYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 740 TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
|+|+|+||+++++.||+|++|.
T Consensus 575 TVIvVeHdl~~i~~ADrIi~Lg 596 (993)
T 2ygr_A 575 TLIVVEHDEDTIEHADWIVDIG 596 (993)
T ss_dssp EEEEECCCHHHHHTCSEEEEEC
T ss_pred EEEEECCCHHHHHhCCEEEEec
Confidence 9999999999888999999994
No 114
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.56 E-value=3.7e-15 Score=179.51 Aligned_cols=89 Identities=26% Similarity=0.332 Sum_probs=74.8
Q ss_pred HHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cCC
Q 040758 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AGI 739 (788)
Q Consensus 665 ~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g~ 739 (788)
+.|..+|++++. .+....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|++ .|.
T Consensus 486 ~~L~~vGL~~l~--------ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~ 557 (972)
T 2r6f_A 486 GFLQNVGLDYLT--------LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 557 (972)
T ss_dssp HHHHHHTCTTSB--------SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHhhhCCCCccc--------cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCC
Confidence 346666665431 12345679999999999999999985 99999999999999999998887754 699
Q ss_pred EEEEEecCcchhhcCCEEEEEc
Q 040758 740 TYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 740 TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
|||+|+||++.++.||+|++|.
T Consensus 558 TVIvVeHdl~~i~~ADrIi~Lg 579 (972)
T 2r6f_A 558 TLIVVEHDEDTMLAADYLIDIG 579 (972)
T ss_dssp EEEEECCCHHHHHSCSEEEEEC
T ss_pred EEEEEecCHHHHHhCCEEEEeC
Confidence 9999999999888999999994
No 115
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.55 E-value=1.2e-15 Score=183.36 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH----HHHHHHh-cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEA-AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~----i~~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++|+|+++ ++.+...+.+|+++||||||+|+|+..... +.+.+.+ .|.|+|++||+.++..+||++..+.+|.
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEE
Confidence 36777765 444445689999999999988888765544 3444555 4999999999998888888765555543
No 116
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.54 E-value=9.2e-15 Score=175.70 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=69.4
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhcCCEEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+ +.|.|+|+|+||+++++.||+|++|
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDV 453 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence 3446789999999999999999999 5999999999999999999988765 4699999999999988899999999
Q ss_pred cc
Q 040758 761 ST 762 (788)
Q Consensus 761 ~~ 762 (788)
..
T Consensus 454 gp 455 (842)
T 2vf7_A 454 GP 455 (842)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 117
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.49 E-value=2.1e-14 Score=165.80 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=69.9
Q ss_pred CCCC-ChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 689 SSVL-SLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 689 g~~L-SGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
...| ||||||||+|||||+.+| ++|||||||++||+.+...|.+.|++ .|+|||+|||+++++..||++++|+++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 99999999999999999999988865 489999999999988889999999876
Q ss_pred C
Q 040758 764 D 764 (788)
Q Consensus 764 ~ 764 (788)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 4
No 118
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.49 E-value=3.2e-15 Score=153.44 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=86.6
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
.-+.++|++++|+||||||||||+++|+|+++| ..|.|.+++. +.. ...++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr---~~~------------------------~~e~~ 62 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR---QPR------------------------PGEVH 62 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECS---CCC------------------------TTCCB
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCC---CCC------------------------ccccc
Confidence 346789999999999999999999999999986 6788877422 110 01235
Q ss_pred eEEEEccccccCCC-CH----HHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 598 GVFFLPQRPYMVLG-SL----RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~-Ti----~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
.++|+||++.+|.. ++ .||+.+..
T Consensus 63 gi~y~fq~~~~f~~~~~~~~f~E~~~~~~--------------------------------------------------- 91 (219)
T 1s96_A 63 GEHYFFVNHDEFKEMISRDAFLEHAEVFG--------------------------------------------------- 91 (219)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEETT---------------------------------------------------
T ss_pred CceEEECCHHHHHHHHhcCHHHHHHHHHh---------------------------------------------------
Confidence 68999999876643 22 12221100
Q ss_pred ccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhh
Q 040758 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYD 752 (788)
Q Consensus 673 ~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~ 752 (788)
.+.|-.+++ ++.++..++++||| ||+.+...+.+.+. .++|+++++|+++.+.
T Consensus 92 ------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 92 ------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELD 144 (219)
T ss_dssp ------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHH
T ss_pred ------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHH
Confidence 011111222 34555668999999 99999999999877 5899999999987654
No 119
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.49 E-value=1.5e-14 Score=146.78 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=54.6
Q ss_pred CChh--HHHHHHHHHHHccC-CCEEEEecCCCCCCHHHH--------HHHHHHHH----hcCCEEEEEecCcc-------
Q 040758 692 LSLG--EQQRLAFARLLLSK-PQIVLLDESTSALDEANE--------AHLYEQIE----AAGITYISVGHRRT------- 749 (788)
Q Consensus 692 LSGG--QrQRiaIARALl~~-p~iLiLDEpTSaLD~~se--------~~i~~~L~----~~g~TvI~IaHr~~------- 749 (788)
+|++ ++|+++.+|+++++ |+++|+||||+.+|+..+ ..+.+.|+ +.|.|+|+++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 3444 36789999999986 999999999999997432 23333343 35999999999753
Q ss_pred -------hhhcCCEEEEEccC
Q 040758 750 -------LYDFHKRVLRISTV 763 (788)
Q Consensus 750 -------~~~~~D~Ilvl~~g 763 (788)
....||.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 24579999999875
No 120
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.48 E-value=8.5e-14 Score=147.67 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=91.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
-+++|++++|+||||||||||++.+++... .|++.+ +.+. .....+.|
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~----g~~~--------------------------~~~~~v~~ 73 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL----EVGE--------------------------LPTGPVIY 73 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT----CCCC--------------------------CCCCCEEE
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC----CCcc--------------------------CCCccEEE
Confidence 478999999999999999999999998654 465532 1110 00234667
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNS 681 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g 681 (788)
+..+... ..+... ++..+. ........+.++.+.+....
T Consensus 74 ~~~e~~~--~~~~~r----------------~~~~g~------------------~~~~~~~~~~~~~l~l~~~~----- 112 (279)
T 1nlf_A 74 LPAEDPP--TAIHHR----------------LHALGA------------------HLSAEERQAVADGLLIQPLI----- 112 (279)
T ss_dssp EESSSCH--HHHHHH----------------HHHHHT------------------TSCHHHHHHHHHHEEECCCT-----
T ss_pred EECCCCH--HHHHHH----------------HHHHHh------------------hcChhhhhhccCceEEeecC-----
Confidence 6554321 001000 000000 01123334455555543221
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHH----hcCCEEEEEecCcch
Q 040758 682 LDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS--ALDEANE---AHLYEQIE----AAGITYISVGHRRTL 750 (788)
Q Consensus 682 ~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTS--aLD~~se---~~i~~~L~----~~g~TvI~IaHr~~~ 750 (788)
+.....||+||+|++ |+++.+|+++|+||||+ ++|.... ..+.+.|+ +.|+|+|+|+|....
T Consensus 113 ----~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 113 ----GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp ----TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred ----CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 234567999998865 68899999999999999 9997543 55555553 359999999998643
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.48 E-value=2.9e-15 Score=149.01 Aligned_cols=164 Identities=21% Similarity=0.095 Sum_probs=95.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
.+++|++++|+||||||||||+++|+|. |+.|.|.+++. ++. .....+..++|
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d---~~~----------------------~~~~~~~~~~~ 57 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSD---DLW----------------------GYIKHGRIDPW 57 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTT---HHH----------------------HTCCSSCCCTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEccc---chh----------------------hhhhcccccCC
Confidence 4789999999999999999999999998 78899998532 221 00011233677
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNS 681 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g 681 (788)
++|++. .+.|+.+|+.+.... ..+ .+....+ +.+. ....+ +.+..
T Consensus 58 ~~~~~~-~~~~v~~~l~~~~~~--------~~~-~~~~~~~------~~~~------~~~~l-~~~~~------------ 102 (191)
T 1zp6_A 58 LPQSHQ-QNRMIMQIAADVAGR--------YAK-EGYFVIL------DGVV------RPDWL-PAFTA------------ 102 (191)
T ss_dssp SSSHHH-HHHHHHHHHHHHHHH--------HHH-TSCEEEE------CSCC------CTTTT-HHHHT------------
T ss_pred ccchhh-hhHHHHHHHHHHHHH--------Hhc-cCCeEEE------eccC------cHHHH-HHHHh------------
Confidence 888764 345777777542100 000 0000000 0000 00000 00000
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~--g~TvI~IaHr~~~~~~~D~Il 758 (788)
.......+|+|++||+++||++.++|+++ +|++..+.+.+.+... -..+++.++..+....+++|+
T Consensus 103 ---~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~ 170 (191)
T 1zp6_A 103 ---LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAI 170 (191)
T ss_dssp ---TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTH
T ss_pred ---cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHHH
Confidence 01123459999999999999999999987 6888777777776541 123445555444444455543
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.47 E-value=1e-14 Score=162.86 Aligned_cols=189 Identities=13% Similarity=0.122 Sum_probs=109.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEH--LLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~--iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+++++ ++.|+ +.+ |+++||++++|++ +|||||||||||||+|+|+|+. ++|.+....
T Consensus 16 ~l~~~~-~~~y~--~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~-------- 75 (427)
T 2qag_B 16 TVPLAG-HVGFD--SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHT-------- 75 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------C--------
T ss_pred eEEEee-EEEEC--Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCC--------
Confidence 366666 78885 345 9999999999999 9999999999999999999984 211111000
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....++.++|++|++.++ ..|+.||+.|+..... ....+. ...+
T Consensus 76 ---------------~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~-~~~~~~-----i~~~------------- 121 (427)
T 2qag_B 76 ---------------QPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINK-EDSYKP-----IVEF------------- 121 (427)
T ss_dssp ---------------CSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCH-HHHSHH-----HHHH-------------
T ss_pred ---------------CccceEeeEEEEeecCccccccchhhhhhhhhcccc-chhhhH-----HHHH-------------
Confidence 0011234699999999887 4599999999753210 000000 0000
Q ss_pred CCCCChHHHHHHHHhc-cccccccc-CCC-----ccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 655 SSKPSTDDLIKALEDV-KLGYILPR-LNS-----LDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~-~l~~~~~~-~~g-----~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
-.+.+.+.+... ++..-+.. .+. +--..+.+..|+-.+ +.|+++|..+++++++||||..|.+...
T Consensus 122 ----i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 122 ----IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp ----HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHH
Confidence 011223333332 22110000 000 000112234577666 8999999999999999999999988766
Q ss_pred HHHHHHHH----hcCCEEEEEecC
Q 040758 728 AHLYEQIE----AAGITYISVGHR 747 (788)
Q Consensus 728 ~~i~~~L~----~~g~TvI~IaHr 747 (788)
..+.+.+. ..|.+++.++.+
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 66655554 469999998864
No 123
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.46 E-value=1.1e-15 Score=163.42 Aligned_cols=131 Identities=13% Similarity=0.094 Sum_probs=87.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
++.+++|+|+||||||||.++|.+++.+. | . . ++.+.+|+|
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------------------------------~-~~~~~iv~~ 70 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------------------------------G-EKSIGYASI 70 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------------------------------G-GSCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------------------------------C-CceEEEecc
Confidence 57899999999999999999999988753 1 0 0 123667799
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT 684 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t 684 (788)
|.++++.++++|+.++........ ..+ .....+.+.+.+.++.+. .|++|
T Consensus 71 D~f~~~~~~~~~l~~~~~~~~l~~------~~g----------------~p~a~d~~~l~~~l~~l~--------~g~~t 120 (290)
T 1odf_A 71 DDFYLTHEDQLKLNEQFKNNKLLQ------GRG----------------LPGTHDMKLLQEVLNTIF--------NNNEH 120 (290)
T ss_dssp GGGBCCHHHHHHHHHHTTTCGGGS------SSC----------------STTSBCHHHHHHHHHHHT--------C----
T ss_pred ccccCChHHHHHHhccccccchhh------hcc----------------CcchhHHHHHHHHHHHhh--------ccCcc
Confidence 999999999999977532100000 000 000112334444454432 23332
Q ss_pred -------cccCCCCCChhHHHHHHHH--HHHccCCCEEEEecCCCCCCHHH
Q 040758 685 -------TYEWSSVLSLGEQQRLAFA--RLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 685 -------~~e~g~~LSGGQrQRiaIA--RALl~~p~iLiLDEpTSaLD~~s 726 (788)
...++..+||||+||+++| |++ +|+|||+||+|+++|++.
T Consensus 121 ~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 121 PDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp --CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1345678999999999998 666 999999999999999864
No 124
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.39 E-value=2.6e-13 Score=139.67 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=34.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCceEEEee
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAG--LWSD-----GRGKITFYV 561 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~g--l~~p-----~~G~I~~~~ 561 (788)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 589999999999999999999999999 5655 567777743
No 125
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.39 E-value=5.7e-15 Score=160.04 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=97.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC--------CCCCceEEEeeccCcccccCCCccchhhhcccccc-cchhc-ccccCc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW--------SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMN-GELTR-SMNRNS 596 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~--------~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~r 596 (788)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.+..... ... .++. +---+ ....++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~-----~~~-----~el~~gCicc~~~~~~~ 74 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA-----TQI-----KTLTNGCICCSRSNELE 74 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTS-----CEE-----EEETTSCEEECTTSCHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCC-----CCE-----EEECCCceEEcccHHHH
Confidence 589999999999999999999998 789999999754432210 000 0000 00000 011234
Q ss_pred ceEEEE---cccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 597 RGVFFL---PQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 597 ~~i~~v---~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
+.++++ +|++.+ |+.++.||..++.+.. +.... ... .+. -....+
T Consensus 75 ~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~----~~~~~--------~~~----------------~~~---~~~~~l 123 (318)
T 1nij_A 75 DALLDLLDNLDKGNIQFDRLVIECTGMADPGP----IIQTF--------FSH----------------EVL---CQRYLL 123 (318)
T ss_dssp HHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH----HHHHH--------HHS----------------HHH---HHHEEE
T ss_pred HHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH----HHHHH--------hcC----------------ccc---cCeEEE
Confidence 457777 687764 5778999887764321 00000 000 000 000111
Q ss_pred ccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCc
Q 040758 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRR 748 (788)
Q Consensus 673 ~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~ 748 (788)
+......+..+.... ..+||+||+||+..+++++.+|+++ ||| +.+.+.+++ .+.|+++++|+.
T Consensus 124 ~~~l~~vd~~~~~~~-~~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 124 DGVIALVDAVHADEQ-MNQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEEEEEEETTTHHHH-HHHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred CCEEEEEEHHHHHHH-HhhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 111111110000000 1148999999999999999999987 998 455555543 589999999974
No 126
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.39 E-value=5.9e-15 Score=143.77 Aligned_cols=89 Identities=17% Similarity=-0.001 Sum_probs=69.9
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
.+|+++.|+ ++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|. ++.
T Consensus 10 ~~~~~~~~g--~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~---~i~------------ 71 (158)
T 1htw_A 10 DEFSMLRFG--KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTY---TLV------------ 71 (158)
T ss_dssp SHHHHHHHH--HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTT---TCE------------
T ss_pred CHHHHHHHH--HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCE---eee------------
Confidence 356677774 457899999999999999999999999999999999999 99999998432 221
Q ss_pred ccccccchhcccccCcceEEEEccccccCCCCHHHHhc-CC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI-YP 620 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~-~~ 620 (788)
. .. ..++ +++|++.+|.-|+.||+. +|
T Consensus 72 -----~----~~-~~~~---~~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 72 -----E----EY-NIAG---KMIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp -----E----EE-EETT---EEEEEEECTTCSCTTHHHHST
T ss_pred -----e----ec-cCCC---cceeccccccCCcHHHHHHcC
Confidence 0 00 1112 789999999779999994 44
No 127
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.38 E-value=3.8e-15 Score=162.69 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=71.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|+++.|. .+.+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.+.|.....
T Consensus 29 ~ie~~~~~~~~~--~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~--------- 97 (337)
T 2qm8_A 29 LAESRRADHRAA--VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR--------- 97 (337)
T ss_dssp HHTCSSHHHHHH--HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS---------
T ss_pred HHeeCCcccccC--hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccc---------
Confidence 366778888884 457899999999999999999999999999999999999999999999655432110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~ 610 (788)
. .......+..+++++|++.+|.
T Consensus 98 -~---------~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 98 -T---------GGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp -S---------CCCSSCCGGGSTTGGGCTTEEE
T ss_pred -c---------ccchHHHhhhheeeccCccccc
Confidence 0 0011123556999999998885
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.37 E-value=8.7e-14 Score=157.29 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=64.9
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
-+++||++++|++++|||+||||||||+++|+|++.|++|+|.+++.|..... ...+......
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~a-----------------a~eQL~~~~~ 345 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA-----------------AVEQLQVWGQ 345 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHH-----------------HHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchh-----------------hHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999643321100 0000000012
Q ss_pred cceEEEEccccccC-CCCHHHHhcCC
Q 040758 596 SRGVFFLPQRPYMV-LGSLRQQLIYP 620 (788)
Q Consensus 596 r~~i~~v~Q~~~lf-~~Ti~eNi~~~ 620 (788)
|++|+|++|++.++ ..|+++|+.++
T Consensus 346 r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 346 RNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp HHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred hcCceEEecccCcCHHHHHHHHHHHH
Confidence 45699999998765 45889998764
No 129
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.36 E-value=1.3e-12 Score=144.54 Aligned_cols=75 Identities=31% Similarity=0.356 Sum_probs=67.7
Q ss_pred CCCCChhHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 689 SSVLSLGEQQRL------AFARLLLSK-PQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 689 g~~LSGGQrQRi------aIARALl~~-p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
...||||||||+ ++||++..+ |++|||||||++||+.....+.+.|.+ .+.++|+|||++++...||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 357999999988 668999999 999999999999999999999999976 35799999999988889999999
Q ss_pred EccC
Q 040758 760 ISTV 763 (788)
Q Consensus 760 l~~g 763 (788)
|++.
T Consensus 358 l~k~ 361 (371)
T 3auy_A 358 VKKD 361 (371)
T ss_dssp EEES
T ss_pred EEec
Confidence 9863
No 130
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.35 E-value=1.3e-14 Score=147.26 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=97.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
.++|++++|+||||||||||+++|+|+++|+ |. .+|+|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~-----------------------------------------~~g~v 56 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GL-----------------------------------------PAEVV 56 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TC-----------------------------------------CEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CC-----------------------------------------ceEEE
Confidence 4789999999999999999999999998865 30 15667
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCc
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL 682 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 682 (788)
+|+.+.+..+..+|+..... ... +. ..+.+.+.+.++.+... +.+
T Consensus 57 ~~d~~~~~~~~~~~~~~~~~-~~~-------------~~---------------~~~~~~~~~~l~~l~~~------~~i 101 (208)
T 3c8u_A 57 PMDGFHLDNRLLEPRGLLPR-KGA-------------PE---------------TFDFEGFQRLCHALKHQ------ERV 101 (208)
T ss_dssp ESGGGBCCHHHHGGGTCGGG-TTS-------------GG---------------GBCHHHHHHHHHHHHHC------SCE
T ss_pred ecCCCcCCHHHHHHhccccc-CCC-------------Cc---------------hhhHHHHHHHHHHHhcC------Cce
Confidence 77776666555555431000 000 00 01122333333333222 112
Q ss_pred ccc-ccCCCCCChhHHHHHHHH-HHHccCCCEEEEecCC-----------CCCCHHHHHHHHHHHHh---cCCEEEEEec
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFA-RLLLSKPQIVLLDEST-----------SALDEANEAHLYEQIEA---AGITYISVGH 746 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIA-RALl~~p~iLiLDEpT-----------SaLD~~se~~i~~~L~~---~g~TvI~IaH 746 (788)
+.. .+++..+|+||+||+++| |+++.++.++++|||. ..||...+..+.+.+++ .|.|.--+.|
T Consensus 102 ~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~ 181 (208)
T 3c8u_A 102 IYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVA 181 (208)
T ss_dssp EEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 222 466777999999999999 9999999999999985 44677777767666654 3666665555
Q ss_pred Cc
Q 040758 747 RR 748 (788)
Q Consensus 747 r~ 748 (788)
+.
T Consensus 182 ~~ 183 (208)
T 3c8u_A 182 RA 183 (208)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 131
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.32 E-value=1.8e-12 Score=146.00 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=67.0
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 690 SVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
..||||||||++||++|+ ++||++||||||++||+.....+.+.|.+ .+.++|+|||+..+...||++++|..
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 459999999999999999 68999999999999999999999998875 36899999999888888999999975
No 132
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.30 E-value=2.3e-13 Score=147.85 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=102.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
..++|++++|+|||||||||+++.|+|++.|++|+|.+.|.|..... ...+......+.++.+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~-----------------a~eql~~~~~~~gv~~ 187 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG-----------------AIEQLEEHAKRIGVKV 187 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT-----------------HHHHHHHHHHHTTCEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc-----------------hHHHHHHHHHHcCceE
Confidence 34789999999999999999999999999999999999765532211 0000000011234779
Q ss_pred EccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCC
Q 040758 602 LPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680 (788)
Q Consensus 602 v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 680 (788)
++|+..++. .|++||+.++... +.... +
T Consensus 188 v~q~~~~~p~~~v~e~l~~~~~~-------------~~d~v---------------------------------l----- 216 (328)
T 3e70_C 188 IKHSYGADPAAVAYDAIQHAKAR-------------GIDVV---------------------------------L----- 216 (328)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH-------------TCSEE---------------------------------E-----
T ss_pred EeccccCCHHHHHHHHHHHHHhc-------------cchhh---------------------------------H-----
Confidence 999988775 4888888653110 00000 0
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecCcch---------
Q 040758 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHRRTL--------- 750 (788)
Q Consensus 681 g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr~~~--------- 750 (788)
.|+.+... .-..=.++.-.++|++..++++++||.+|. .|... ..+.+. +.+.|.|++||--+.
T Consensus 217 -iDtaG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~---~~~~~~~~~~it~iilTKlD~~a~~G~~l~~ 290 (328)
T 3e70_C 217 -IDTAGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE---QARQFNEAVKIDGIILTKLDADARGGAALSI 290 (328)
T ss_dssp -EEECCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---HHHHHHHHSCCCEEEEECGGGCSCCHHHHHH
T ss_pred -Hhhccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---HHHHHHHhcCCCEEEEeCcCCccchhHHHHH
Confidence 01110000 000011222348999999999999996665 33222 223344 369999999994321
Q ss_pred -hhcCCEEEEEccCCC
Q 040758 751 -YDFHKRVLRISTVDQ 765 (788)
Q Consensus 751 -~~~~D~Ilvl~~g~~ 765 (788)
....-.|..+..|..
T Consensus 291 ~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 291 SYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHTCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 123457888887753
No 133
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.30 E-value=9.2e-13 Score=144.22 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=54.3
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEe-eccCcccccCCCccchhhhcccccccchhccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFY-VKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
-++++++. .+|++++|+||||||||||+|+|+|+.. |..|+|.++ |.+ ..
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g---~~------------------------ 256 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG---QH------------------------ 256 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------------------------------
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC---cc------------------------
Confidence 57777775 4799999999999999999999999999 999999874 221 10
Q ss_pred ccCcceEEEEccccccCCC-CHHHHh
Q 040758 593 NRNSRGVFFLPQRPYMVLG-SLRQQL 617 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~~-Ti~eNi 617 (788)
...+..+++++|++++++. |++++.
T Consensus 257 tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 257 TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp --CCCEEEECTTSCEEEECHHHHTCC
T ss_pred ceEEEEEEEECCCCEecCcccHHHhh
Confidence 0224569999999988865 888753
No 134
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.26 E-value=2.7e-14 Score=159.93 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=52.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.++++++++.|+ ...+|+++ +. ++|+.++|+||||||||||+++|+|+++|++|+|.+.+.+
T Consensus 143 ~~~l~~Lg~~~~--~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAH--NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHH--HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCCHHHcCCCHH--HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 467788887774 35688888 54 8999999999999999999999999999999999986543
No 135
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.26 E-value=3.1e-12 Score=142.52 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=32.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCc-----eEEEee
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRA--MAGLWSDGRG-----KITFYV 561 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~l--L~gl~~p~~G-----~I~~~~ 561 (788)
-|++|++++|+||||||||||++. +.+..+++.| .+++++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 589999999999999999999994 4577776444 677643
No 136
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.22 E-value=5.1e-14 Score=161.67 Aligned_cols=193 Identities=15% Similarity=0.069 Sum_probs=108.5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++. .
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~--E~~-----------------------~ 301 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR--EIK-----------------------L 301 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC--CCC-----------------------C
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc--ccc-----------------------C
Confidence 357899999999999999999999999999999999999999999985322 111 0
Q ss_pred ccCcceEEEEccccccCC-CCHHHHhcCC---CCc------cccchhhHHHHhcC-CccchhhhhhhhhhccCCCCCChH
Q 040758 593 NRNSRGVFFLPQRPYMVL-GSLRQQLIYP---TWT------EEVKPASDAAKSAG-LVPFLTSAQKLENVGRKSSKPSTD 661 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~---~~~------~~~~~~~~aa~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 661 (788)
.....++++.|+..... .|..+++... +++ ....++..+.++++ -|..+. .. ...+..
T Consensus 302 -~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~s---------T~-Ha~~~~ 370 (511)
T 2oap_1 302 -YHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYS---------TL-HAGDIN 370 (511)
T ss_dssp -CCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEE---------EE-ECSSHH
T ss_pred -CCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccc---------cc-ccCCHH
Confidence 01234677777654221 2666665321 110 01111222211111 000000 00 011223
Q ss_pred HHHHHHHhc--ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 662 DLIKALEDV--KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 662 ~~~~~l~~~--~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
++.+.+... ++.... .+.++........+||||+||.++|. + | |++||+.+...+.+.+.+
T Consensus 371 ~~l~Rl~~~~~~v~~~l--~~~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~ 436 (511)
T 2oap_1 371 QMVYRLESEPLKVPRSM--LQFLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP 436 (511)
T ss_dssp HHHHHHHSTTTCCCGGG--GGGCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET
T ss_pred HHHHHHHhcccccHHHH--HhhccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc
Confidence 333333321 111100 01112111223458999999987751 2 7 999999877666555533
Q ss_pred cCCEEEE--EecCcchh-hcCC
Q 040758 737 AGITYIS--VGHRRTLY-DFHK 755 (788)
Q Consensus 737 ~g~TvI~--IaHr~~~~-~~~D 755 (788)
.++|+++ +||+++.+ +.|+
T Consensus 437 ~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 437 KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp TTTEEEECSCCTHHHHHHHHHT
T ss_pred cCCEEEEcccHHHHHHHHHHcC
Confidence 5889875 89998654 3443
No 137
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.19 E-value=4.9e-12 Score=124.81 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=36.1
Q ss_pred ccCCCEEEEecCCC-CCCHHHHHHHHHHHHh---cCCEEEEEecCc
Q 040758 707 LSKPQIVLLDESTS-ALDEANEAHLYEQIEA---AGITYISVGHRR 748 (788)
Q Consensus 707 l~~p~iLiLDEpTS-aLD~~se~~i~~~L~~---~g~TvI~IaHr~ 748 (788)
+.+|++|+||||++ ++|+.....+.+.+.. .|+++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45899999999996 8999999888887753 689999999985
No 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.19 E-value=1.6e-13 Score=142.67 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEEEe
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMA---GLWSDGRGKITFY 560 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~---gl~~p~~G~I~~~ 560 (788)
++++++|+||||||||||+++|+ |+..|+.|+|.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 47999999999999999999999 9999999998764
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=2.4e-11 Score=132.43 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=75.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
..+.|+||+|+||||++++++| ++.|+.|.+.++|.+.... ...+..+++++|+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA-------------------------SNRKLELNVVSSP 91 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------------------------------CCEECS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc-------------------------ccccceeeeeccc
Confidence 3499999999999999999999 8999999999854321110 0113558888887
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT 685 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~ 685 (788)
+++.- ...... ......+.+.++.+... .+++
T Consensus 92 ~~~~~---------~~~~~~-------------------------------~~~~~~~~~~i~~~~~~------~~~~-- 123 (354)
T 1sxj_E 92 YHLEI---------TPSDMG-------------------------------NNDRIVIQELLKEVAQM------EQVD-- 123 (354)
T ss_dssp SEEEE---------CCC-----------------------------------CCHHHHHHHHHHHTTT------TC----
T ss_pred ceEEe---------cHhhcC-------------------------------CcchHHHHHHHHHHHHh------cccc--
Confidence 75421 000000 00011122222221100 0000
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
+.. .||| +..+|+++|||||++ ||+.+...+.+.+++ .+.++|++||+++
T Consensus 124 -~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 124 -FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -----------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred -ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 000 3676 788999999999999 999999999999986 5789999999864
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.16 E-value=5.1e-14 Score=140.13 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecC-cch-hhcCCEEEEEc
Q 040758 693 SLGEQQRLAFAR------LLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHR-RTL-YDFHKRVLRIS 761 (788)
Q Consensus 693 SGGQrQRiaIAR------ALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr-~~~-~~~~D~Ilvl~ 761 (788)
|+|++|++.++. +++++|+...+|| +||+..... ++.+.. .+.|+|.++|. ++. .+.||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 889999988888 8999999888884 799887777 666653 47899999998 654 46799998 8
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 170 ~g~~ 173 (189)
T 2bdt_A 170 NPRF 173 (189)
T ss_dssp CGGG
T ss_pred CCcE
Confidence 8865
No 141
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.13 E-value=4.5e-11 Score=133.69 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=33.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
-++++|+++.|+.++|||+||||||||++.|++..+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 489999999999999999999999999999999854
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.10 E-value=2.5e-13 Score=146.41 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=55.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEE-------------------eCCCEEEEEcCCCCcHHHHHHHHhcCCC--CCC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVI-------------------NEKEHLLVMGPSGSGKTSLLRAMAGLWS--DGR 554 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i-------------------~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p~~ 554 (788)
.+.|+++||++.|. ++++++++++ ++|+++||+||||||||||+++|+|++. |++
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred ccccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 35699999999993 6899999998 9999999999999999999999999998 999
Q ss_pred ceEEE
Q 040758 555 GKITF 559 (788)
Q Consensus 555 G~I~~ 559 (788)
|+|.+
T Consensus 111 G~i~v 115 (308)
T 1sq5_A 111 RRVEL 115 (308)
T ss_dssp CCEEE
T ss_pred CeEEE
Confidence 99988
No 143
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.08 E-value=1.2e-10 Score=111.98 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=30.8
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
+|+++ +|+.++|+||||||||||++++++.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 45666 8999999999999999999999998876 45
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.03 E-value=9.9e-13 Score=139.43 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=92.3
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
..+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.+..+.. .
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~-----------------------~ 85 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMY-----------------------V 85 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSST-----------------------T
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhh-----------------------h
Confidence 45899999999999 999999999999999999999887 78888543221110 0
Q ss_pred ccCcceEEEEcccc-ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 593 NRNSRGVFFLPQRP-YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~-~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
...++.+++++|++ ..+. -++.|++.+........ ..........+.
T Consensus 86 ~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---------------------------~~~~~~~~~~~~---- 134 (274)
T 2x8a_A 86 GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---------------------------ETGASVRVVNQL---- 134 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------------------------------CTTHHHHH----
T ss_pred hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---------------------------cchHHHHHHHHH----
Confidence 01123467777764 2222 24444443311100000 000000001111
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC------------CCCHHHHHHHHHHHHh
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS------------ALDEANEAHLYEQIEA 736 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTS------------aLD~~se~~i~~~L~~ 736 (788)
...|||||+||+.|++|+..+|++| |||+. --|.+.+..|++.+.+
T Consensus 135 ------------------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 135 ------------------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp ------------------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred ------------------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 1239999999999999999999985 99964 3477888888877653
No 145
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.02 E-value=1.1e-10 Score=125.47 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=77.5
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+...+|.+++. .... ...+.+|
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~-------------------~~~~-~~~~~~g 218 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTT-------------------GVRL-IPFGKGS 218 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCC-------------------CEEE-EEETTTE
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCcee-------------------eEEE-EEcCCCc
Confidence 345679999999999999999999999 999999999983223333320 0000 0112589
Q ss_pred EEccccccC------CCCHHHHh--cCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 601 FLPQRPYMV------LGSLRQQL--IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 601 ~v~Q~~~lf------~~Ti~eNi--~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
+|+|+|.+. +.|+ ||+ .|+.. .+.. ++..++ .........+.++++.+++
T Consensus 219 ~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~----~~~~--c~~~~~---------------~~~~e~~~~v~~~l~~~~L 276 (302)
T 2yv5_A 219 FVGDTPGFSKVEATMFVKP-REVRNYFREF----LRYQ--CKYPDC---------------THTNEPGCAVKEAVKNGEI 276 (302)
T ss_dssp EEESSCCCSSCCGGGTSCG-GGGGGGCGGG----HHHH--HHSTTC---------------CSSSCTTCHHHHHHHTTSS
T ss_pred EEEECcCcCcCcccccCCH-HHHHHHHHHH----HHcc--CCCCCC---------------CCCCCCCCHHHHHHHcCCC
Confidence 999999653 3477 777 34310 0000 111010 0011223467888888777
Q ss_pred cc-ccccCCCccccccCCCCCChhHHHHHHHHH
Q 040758 673 GY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFAR 704 (788)
Q Consensus 673 ~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIAR 704 (788)
.. ..+ .+...|||.++++++|||
T Consensus 277 ~~~~~~---------~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 277 SCERYK---------SYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CHHHHH---------HHHHHTTCCCTTHHHHSS
T ss_pred CHHHHH---------HHHHHHHHHHHHHHHHhc
Confidence 53 211 224459999999999997
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.01 E-value=3.4e-10 Score=121.20 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=47.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
+.++++++.|+. .. ++++|+ +|++++++|+||+||||++..|++++.+..|+|.+.
T Consensus 77 ~~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 77 TVYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp HHHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 455677788853 22 788888 999999999999999999999999999999999984
No 147
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.99 E-value=1.9e-10 Score=123.73 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=38.3
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.+++..++|++++|+|||||||||+++.|++.+.+..|+|.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3456678999999999999999999999999999988899873
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.92 E-value=6.4e-10 Score=126.11 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=51.6
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCc
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE 565 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~ 565 (788)
.+.++++.. ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+..
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 345555432 3479999999999 999999999999999999999999999999999765543
No 149
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.87 E-value=7.3e-10 Score=118.93 Aligned_cols=39 Identities=23% Similarity=0.140 Sum_probs=31.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 456689999999999999999999999999999999998
No 150
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.86 E-value=9e-12 Score=135.70 Aligned_cols=93 Identities=20% Similarity=0.300 Sum_probs=64.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCC-------CEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEEeeccCccc
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEK-------EHLLVMGPSGSGKTSLLRAMAGLW----SDGRGKITFYVKDREET 567 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~G-------e~iaIvG~sGsGKSTLl~lL~gl~----~p~~G~I~~~~~~~~~i 567 (788)
++.++++..|+ .+.+++++++.+++| +.++|+||||+|||||+++|++.. .+.+|.+..++. ++
T Consensus 19 lr~~~l~~~~g--~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~---~l 93 (334)
T 1in4_A 19 LRPKSLDEFIG--QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG---DM 93 (334)
T ss_dssp TSCSSGGGCCS--CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHH---HH
T ss_pred cCCccHHHccC--cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHH---HH
Confidence 44556666674 456899999999887 899999999999999999999987 556666554211 11
Q ss_pred ccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHh
Q 040758 568 DAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi 617 (788)
... .. ...+..|++++|...++. ++.|++
T Consensus 94 -----------------~~~--~~-~~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 94 -----------------AAI--LT-SLERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp -----------------HHH--HH-HCCTTCEEEEETGGGCCH-HHHHHH
T ss_pred -----------------HHH--HH-HccCCCEEEEcchhhcCH-HHHHHH
Confidence 000 00 012356999999887664 666665
No 151
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.83 E-value=3.8e-10 Score=132.56 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=99.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR-GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~-G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
...+++++++.+++|+.++|+||||+|||||+++|++++++.. |.+.+++.. .
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~---~----------------------- 99 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP---E----------------------- 99 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT---T-----------------------
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc---c-----------------------
Confidence 4568999999999999999999999999999999999999988 777764322 1
Q ss_pred ccccCcceEEEEcccc----------------------ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 591 SMNRNSRGVFFLPQRP----------------------YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~----------------------~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
......++++|+.. ..+ ..++.+|+..++...... +++.
T Consensus 100 --~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~------------~~v~---- 161 (604)
T 3k1j_A 100 --DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA------------PFID---- 161 (604)
T ss_dssp --CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSC------------CEEE----
T ss_pred --cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCC------------CEEE----
Confidence 01223477777654 111 113333333221110000 0000
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
. ...+ ..+.. +.++....+...+|+|++|++..++....++.+|+|||... |++...
T Consensus 162 -----~--~~~~---~~~L~------------G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q 218 (604)
T 3k1j_A 162 -----A--TGAH---AGALL------------GDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQ 218 (604)
T ss_dssp -----C--TTCC---HHHHH------------CEECCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHH
T ss_pred -----c--CCCC---HHhcC------------ceEEechhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHH
Confidence 0 0000 11111 01111112234599999999999999999999999999988 899999
Q ss_pred HHHHHHHHh
Q 040758 728 AHLYEQIEA 736 (788)
Q Consensus 728 ~~i~~~L~~ 736 (788)
..+.+.|++
T Consensus 219 ~~Ll~~Le~ 227 (604)
T 3k1j_A 219 QSLLTAMQE 227 (604)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998874
No 152
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.74 E-value=9.7e-11 Score=129.86 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=47.9
Q ss_pred CC--CEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcc-hhhcCCEEE-EEccC-CCCCCCCCeE
Q 040758 709 KP--QIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRT-LYDFHKRVL-RISTV-DQNSSQSNWK 773 (788)
Q Consensus 709 ~p--~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~-~~~~~D~Il-vl~~g-~~~~~~~~~~ 773 (788)
+| +++++|||++.+|++......+.+.+ .|.|++ +|... ....||++. .|++| +..-. +.|.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~ 209 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRK-GDWS 209 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeec-CCCC
Confidence 89 99999999999999998887777654 366653 99864 457899998 89999 65433 5553
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.73 E-value=1.2e-09 Score=109.36 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=47.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceE
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGV 599 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i 599 (788)
|+++++|++++|+||||||||||+++|+|+++ .+.+++ .+.. ..+....+..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~---~~~~--------------------~~~~~~~~~~~ 53 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISI---SHTT--------------------RPKRPGDQEGV 53 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECC---CEEC--------------------SCCCTTCCBTT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEec---eecc--------------------CCCchhHhcCc
Confidence 67889999999999999999999999999974 466632 2221 00111224568
Q ss_pred EEEccccccCCC-CHHHHhc
Q 040758 600 FFLPQRPYMVLG-SLRQQLI 618 (788)
Q Consensus 600 ~~v~Q~~~lf~~-Ti~eNi~ 618 (788)
+|++|++.+|.. +..+|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 54 DYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp TBEECCHHHHHHHHHHTCEE
T ss_pred eEEeccHHHHHHHHhcCcEE
Confidence 999999987754 5555543
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.71 E-value=8.6e-08 Score=98.32 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=43.9
Q ss_pred HHHHHHHHHc--cCCCEEEEecCCCCC--CHHHHHHHHH----HHHhcCCEEEEEecCcc---------hhhcCCEEEEE
Q 040758 698 QRLAFARLLL--SKPQIVLLDESTSAL--DEANEAHLYE----QIEAAGITYISVGHRRT---------LYDFHKRVLRI 760 (788)
Q Consensus 698 QRiaIARALl--~~p~iLiLDEpTSaL--D~~se~~i~~----~L~~~g~TvI~IaHr~~---------~~~~~D~Ilvl 760 (788)
+....++.++ .+|+++++||+|+.+ |+........ .+++.|.|+|+++|... ....||.++.|
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L 194 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRL 194 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEE
Confidence 3344444444 579999999999988 5432233322 33457999999999753 24678999999
Q ss_pred cc
Q 040758 761 ST 762 (788)
Q Consensus 761 ~~ 762 (788)
+.
T Consensus 195 ~~ 196 (247)
T 2dr3_A 195 DL 196 (247)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.67 E-value=2.7e-08 Score=106.44 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=30.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KIT 558 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~ 558 (788)
++|++++++|||||||||+++.|++.+.+++| +|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~ 138 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA 138 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 47999999999999999999999999988777 443
No 156
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.65 E-value=8.4e-10 Score=113.56 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.|+++|+...|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.+
T Consensus 9 ~l~l~~~~~~~~---~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFA---R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEE---E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEEeeecccC---C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 488888876552 1 566667 8999999999999999999999999999999996544
No 157
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.64 E-value=4.9e-09 Score=119.71 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=38.5
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEEeecc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAG--LWSDGRGKITFYVKD 563 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g--l~~p~~G~I~~~~~~ 563 (788)
.+++++.++.+++|.|+|||||||+++.|.. ++.++.|++.+.+.|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 4678888999999999999999999999876 677777888775443
No 158
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=7.8e-09 Score=111.00 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=42.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
+++.+|++++|+||||||||||+|+|+|+.+|..|+|.+...+|.+.+. .....+..+|
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~---------------------~~~~~~~~~g 226 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR---------------------HVELIHTSGG 226 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CC---------------------CCCEEEETTE
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccccc---------------------HHHHhhcCCE
Confidence 5567899999999999999999999999999999999873222333320 0001111279
Q ss_pred EEccccccCC-----CCHHHHhc
Q 040758 601 FLPQRPYMVL-----GSLRQQLI 618 (788)
Q Consensus 601 ~v~Q~~~lf~-----~Ti~eNi~ 618 (788)
+++|.|.+.. .|+ ||+.
T Consensus 227 ~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 227 LVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp EEESSCSCSSCCCTTCCH-HHHG
T ss_pred EEecCCCccccccccCCH-HHHH
Confidence 9999997754 467 8874
No 159
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.60 E-value=9.2e-11 Score=124.07 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=47.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
-+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 50 ~~l~~l~~~~~--~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 50 EELKEIVEFLK--NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp HHHHHHHHHHH--CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHH--CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 34567776674 346899999999999 99999999999999999999876 78888854
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.59 E-value=4.4e-09 Score=104.52 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=32.3
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 699 RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 699 RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+||+++++|+++++| |||+|..+..++++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
No 161
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.57 E-value=1.5e-08 Score=104.01 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=23.5
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA-GLWSD 552 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~-gl~~p 552 (788)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4579999999999999999999999999999999 99865
No 162
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.51 E-value=1.7e-10 Score=120.05 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=47.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.+.+++
T Consensus 26 ~~l~~l~~~~~--~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLK--NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHH--CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHH--CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 45667777674 346899999999999 99999999999999999999875 78888854
No 163
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.51 E-value=1.1e-07 Score=104.01 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=30.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
-+++|+++.|.||+|||||||+..++.......|.+.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly 94 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF 94 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 57899999999999999999988777554444455544
No 164
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.50 E-value=4.8e-09 Score=109.54 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=54.9
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE--------EeeccCcccccCCCccchhhhcccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA---GLWSDGRGKIT--------FYVKDREETDAHTSDVDSLEVNSQN 583 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~---gl~~p~~G~I~--------~~~~~~~~i~~~~~~~~~~~~~~~~ 583 (788)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.|. .+|. ++.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~---~~~--------------- 77 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQV---DIS--------------- 77 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTC---CSS---------------
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCC---Ccc---------------
Confidence 444444 789999999999999999999999 99999999997 5322 221
Q ss_pred cccchhcccccCcceEEEEccc------cccCCCCHHHHhcC
Q 040758 584 MNGELTRSMNRNSRGVFFLPQR------PYMVLGSLRQQLIY 619 (788)
Q Consensus 584 ~~~~~~~~~~~~r~~i~~v~Q~------~~lf~~Ti~eNi~~ 619 (788)
. ......+++.+++++|+ .+++..++.+|+..
T Consensus 78 --~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~~ 115 (252)
T 4e22_A 78 --T--EEALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIRT 115 (252)
T ss_dssp --S--STTHHHHHHTCCEEEEEETTEEEEEETTEECTTGGGS
T ss_pred --c--HHHHHHHHHcCCEEEecCCCCceEEECCeehhHHHHH
Confidence 0 01112345668888854 45666788888753
No 165
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.45 E-value=1.6e-08 Score=105.50 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=36.0
Q ss_pred CcEEEeee-EEEcCCCCccceeeeeEEEeC---CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 497 KLLDIEDL-TLKTPTSKATLVRDLSLVINE---KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 497 ~~I~~~nv-sf~y~~~~~~vL~~isl~i~~---Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..++++|+ +|+|+ ++.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36999999 99993 356799999999999 9999999999999999999999854
No 166
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.43 E-value=2.9e-07 Score=104.27 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=39.9
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEE
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITF 559 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~ 559 (788)
+-+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .+.+
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~ 237 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI 237 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 34578888888999999999999999999999999987665445 5655
No 167
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.33 E-value=7.7e-08 Score=114.04 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=48.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| . ++..+. + ......++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~---~g~~~~--------------d------~~~~e~~~ 58 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-E---EGTTTT--------------D------YTPEAKLH 58 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-G---GTCCSS--------------C------CSHHHHHT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-c---CCcccc--------------c------CCHHHHhc
Confidence 467889999999999999999999999987665 67877 3 232221 0 00112235
Q ss_pred eEEEEccccccCCCCHHHHh
Q 040758 598 GVFFLPQRPYMVLGSLRQQL 617 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi 617 (788)
.+++.+|.+.++..++..||
T Consensus 59 giti~~~~~~~~~~~~~~nl 78 (665)
T 2dy1_A 59 RTTVRTGVAPLLFRGHRVFL 78 (665)
T ss_dssp TSCCSCEEEEEEETTEEEEE
T ss_pred CCeEEecceEEeeCCEEEEE
Confidence 57888888777665555554
No 168
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.31 E-value=2.3e-08 Score=100.47 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=26.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
...+|+.++|+||||||||||++.|++.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334899999999999999999999999886
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.27 E-value=1.9e-07 Score=93.02 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=29.8
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 700 LAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 700 iaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...||+++++|+++++| |||+|.....++++.|.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 35689999999999999 99999999988887764
No 170
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.26 E-value=8.1e-09 Score=105.09 Aligned_cols=34 Identities=35% Similarity=0.428 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW---SDGRGKITF 559 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~---~p~~G~I~~ 559 (788)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5789999999999999999999876 677777764
No 171
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.23 E-value=6.7e-07 Score=89.63 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEecCcch---hhcCCEEEEEccC
Q 040758 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-AGITYISVGHRRTL---YDFHKRVLRISTV 763 (788)
Q Consensus 692 LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaHr~~~---~~~~D~Ilvl~~g 763 (788)
.+.|+.+|..+++.++.+|+.+-.+ ++.++|...+.+.+.+.. .+.++|+-+|.+.. .+.||.+++++-.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~ 133 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVS 133 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEECC
Confidence 4688999999999999888754333 335666666666666654 46688888887532 4679999999753
No 172
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.20 E-value=2.3e-06 Score=97.23 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCC----------CCCCHHHHHHHHHHHH-------hcCCEEEEEecCcchh-----
Q 040758 694 LGEQQRLAFARLLLSKPQIVLLDEST----------SALDEANEAHLYEQIE-------AAGITYISVGHRRTLY----- 751 (788)
Q Consensus 694 GGQrQRiaIARALl~~p~iLiLDEpT----------SaLD~~se~~i~~~L~-------~~g~TvI~IaHr~~~~----- 751 (788)
|++++|-.+++|....|.+|++||+. ++.|.+.+..+.+.|. ..+..+|.+||+++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 67889999999999999999999993 4667766655555443 2467899999997532
Q ss_pred h--cCCEEEEEc
Q 040758 752 D--FHKRVLRIS 761 (788)
Q Consensus 752 ~--~~D~Ilvl~ 761 (788)
+ ..|+.+.+.
T Consensus 173 R~gRFd~~i~i~ 184 (476)
T 2ce7_A 173 RPGRFDKKIVVD 184 (476)
T ss_dssp STTSSCEEEECC
T ss_pred ccCcceeEeecC
Confidence 2 356666654
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.17 E-value=1.3e-06 Score=85.54 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=36.7
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
+++++++.+| +++|+||||||||||+++|.++..+..|...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~ 58 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAM 58 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 7889999999 9999999999999999999998888777543
No 174
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.16 E-value=1.3e-07 Score=94.70 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=42.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE--EEee
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI--TFYV 561 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I--~~~~ 561 (788)
.....+..++..++|++++|+|||||||||+.++|++.+. ..|.+ ++++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 3456788888899999999999999999999999999988 77988 7753
No 175
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.16 E-value=1.2e-06 Score=94.51 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=43.3
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
+++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3478999999999999999999999999999999999999999985443
No 176
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.14 E-value=4.7e-06 Score=91.23 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHh--cCCEEEEEe--cCcc
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLD-ESTSALDEANEAHLYEQIEA--AGITYISVG--HRRT 749 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLD-EpTSaLD~~se~~i~~~L~~--~g~TvI~Ia--Hr~~ 749 (788)
..+|+||+|++. +.+...++-++++| ++++++|.+....+.+.+.+ .++.+|++. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 358999999887 66666788899999 99999999988888777765 388899998 7753
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.14 E-value=9.5e-07 Score=88.10 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=29.9
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
++|++|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 178
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.13 E-value=3.5e-07 Score=100.05 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCCCcEEEeeeEEEcCCCCcccee--------------eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 494 KSQKLLDIEDLTLKTPTSKATLVR--------------DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 494 ~~~~~I~~~nvsf~y~~~~~~vL~--------------~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
...+.+.|+||++.||. ++..|+ |+++.|.+||+++|+||+|+|||||+++|+++.
T Consensus 129 ~~~~ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34678999999999996 667888 999999999999999999999999999999975
No 179
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.11 E-value=7.3e-07 Score=88.25 Aligned_cols=31 Identities=32% Similarity=0.658 Sum_probs=27.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~ 556 (788)
|++++|+||||||||||+++|+|++++..|.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~ 31 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGF 31 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEEC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceE
Confidence 6789999999999999999999999854443
No 180
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.10 E-value=5.9e-06 Score=90.48 Aligned_cols=43 Identities=28% Similarity=0.477 Sum_probs=34.4
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEE
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG--LWSDGRGKIT 558 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g--l~~p~~G~I~ 558 (788)
..+|++++++++ .++|||++|||||||++.|.| +.++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 358999999999 899999999999999999999 7788877664
No 181
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.10 E-value=8.6e-07 Score=97.52 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCCCCChhHHHHHHHH----HHH-ccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 688 WSSVLSLGEQQRLAFA----RLL-LSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIA----RAL-l~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+|+|++||++++ +++ ..+|++ +||||+|.+....+.+.|.+
T Consensus 301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 301 KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 3445788899998887 666 445555 89999999999888887753
No 182
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.09 E-value=1.2e-06 Score=87.58 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=24.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
....++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999765
No 183
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.07 E-value=4.5e-06 Score=83.64 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=28.2
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
-=++++|++++|+|++||||||+.++|++.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999999999764
No 184
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.01 E-value=1.6e-06 Score=85.43 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITF 559 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~ 559 (788)
.+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36999999999999999999999999874 5566654
No 185
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.99 E-value=2.3e-06 Score=85.58 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=30.7
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
..+-.++-++|++++|+||||||||||+++|++.+ |.+.+++
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 33334677899999999999999999999999987 8899854
No 186
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.97 E-value=6.7e-06 Score=89.92 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=34.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
=+++|+++.|.||+|||||||+..+++...+..|.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly 94 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF 94 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48899999999999999999999999988887887755
No 187
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.89 E-value=2.2e-05 Score=85.22 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=30.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457766667999999999999999999999888754
No 188
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.85 E-value=2.6e-07 Score=105.49 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=45.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.+++++...|. ...+++++++.+++| +.|+||+|+|||||+++|++... .|.+.+++
T Consensus 41 ~~l~~lv~~l~--~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 41 EELKEIVEFLK--NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHH--CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHHhh--chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 34555555553 345789999999999 99999999999999999999875 67888854
No 189
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.81 E-value=5.2e-06 Score=83.16 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=36.5
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.++|++++|+|+|||||||+++.|++++++..|.|.+.+.|
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 56799999999999999999999999999989999875443
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.81 E-value=9.9e-07 Score=95.21 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=46.7
Q ss_pred eEEEcCCCCccceeeeeEEEeCCC------EEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEEeeccC
Q 040758 504 LTLKTPTSKATLVRDLSLVINEKE------HLLVMGPSGSGKTSLLRAMAGLWS--DGRGKITFYVKDR 564 (788)
Q Consensus 504 vsf~y~~~~~~vL~~isl~i~~Ge------~iaIvG~sGsGKSTLl~lL~gl~~--p~~G~I~~~~~~~ 564 (788)
+++.|. +...|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+.+-+.|+
T Consensus 66 l~~~~~--~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 66 LSFYVT--ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHH--HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHhhc--chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 344453 4568888998888887 999999999999999999999987 5778877644443
No 191
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.81 E-value=1.2e-05 Score=96.77 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=50.3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHh---cCCEEEE-EecCcch-hhcCC
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTS-ALDEANEAHLYEQIEA---AGITYIS-VGHRRTL-YDFHK 755 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTS-aLD~~se~~i~~~L~~---~g~TvI~-IaHr~~~-~~~~D 755 (788)
..+|+|+.+|..++++++.+++++|+|||+. +||.+....+.+.+.+ ..+++++ .||+.+. .++.+
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 4589999999999999999999999999997 9998877666665543 3456666 4887543 34444
No 192
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.79 E-value=6.8e-06 Score=84.13 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=34.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.+.++|++++|+|+|||||||++++|+++ .|+|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 34578999999999999999999999998 7889986544
No 193
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.76 E-value=1.2e-05 Score=81.00 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=27.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
++|+.++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999987
No 194
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.76 E-value=2.8e-05 Score=86.98 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=45.6
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.++++..|+. . . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+
T Consensus 79 ~~~L~~~~~~-~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 79 YEALKEALGG-E-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp HHHHHHHTTS-S-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhCC-C-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 3456666743 2 2 678888 8999999999999999999999999999999999853
No 195
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.69 E-value=6e-06 Score=91.05 Aligned_cols=43 Identities=33% Similarity=0.390 Sum_probs=39.0
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+++++|+++++|+.++|+||||||||||+++|+|. .+|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 589999999999999999999999999999999985 4677753
No 196
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.65 E-value=1.6e-05 Score=77.30 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=30.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.+|++++|+|+|||||||+.++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999875 7888853
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.63 E-value=3.7e-05 Score=83.68 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=25.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+++.|.||+|||||||+..++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988874
No 198
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.60 E-value=0.0002 Score=73.34 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
+++|+|++|+|||||++.|+|-..+.+|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 589999999999999999999776665543
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.60 E-value=0.00013 Score=81.63 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999999888888876
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.58 E-value=0.00026 Score=77.22 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=32.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh------cCCEEEEEecCcch
Q 040758 708 SKPQIVLLDESTSALDEANEAHLYEQIEA------AGITYISVGHRRTL 750 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~~se~~i~~~L~~------~g~TvI~IaHr~~~ 750 (788)
.+|.+|+|||+... |......+.+.+.+ .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999876 88888777777642 37788999998753
No 201
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.58 E-value=1.1e-05 Score=93.09 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=36.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEE-Eee
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KIT-FYV 561 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~-~~~ 561 (788)
...+++|++++|+|+||||||||+++|++.+.|++| ++. +||
T Consensus 363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 346889999999999999999999999999999987 785 643
No 202
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.57 E-value=2.7e-05 Score=87.40 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=38.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~ 556 (788)
.|+++|+ .+|. +. . ++++.+|++++|+||||||||||+++|+++..+.++.
T Consensus 6 ~l~~~~~-~~~~--~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~ 56 (430)
T 1w1w_A 6 GLELSNF-KSYR--GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNH 56 (430)
T ss_dssp EEEEESC-SSCC--SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----
T ss_pred EEEEeCE-EEEC--Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccccc
Confidence 4788888 6774 21 2 2557789999999999999999999999998887643
No 203
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.55 E-value=0.0001 Score=79.28 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=31.3
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+-+-|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3456777776699999999999999999999887774
No 204
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.53 E-value=0.00029 Score=75.87 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+.+.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888764
No 205
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.52 E-value=0.0003 Score=74.22 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH----------HHHHHHHHHh-------cCCEEEEEecCcc-----h
Q 040758 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN----------EAHLYEQIEA-------AGITYISVGHRRT-----L 750 (788)
Q Consensus 693 SGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s----------e~~i~~~L~~-------~g~TvI~IaHr~~-----~ 750 (788)
++++++|..++++...+|.+|++||+.+-++... ...+...+.. .+..+|.+|++.+ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4677788888888888999999999988765432 1233344432 1345677788753 2
Q ss_pred hhcCCEEEEEc
Q 040758 751 YDFHKRVLRIS 761 (788)
Q Consensus 751 ~~~~D~Ilvl~ 761 (788)
.+.+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34567766654
No 206
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.40 E-value=9.3e-05 Score=80.36 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=25.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
+++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
No 207
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.40 E-value=2.2e-05 Score=85.41 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=45.1
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeec
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVK 562 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~ 562 (788)
+.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 45889999999999999999999999999999999999888888887433
No 208
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=5.5e-05 Score=73.05 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.|++++|+|||||||||+.++|++.+.+ +.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id 34 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYD 34 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEe
Confidence 4789999999999999999999998754 5554
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.25 E-value=0.00021 Score=80.50 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCCCCCH-HHHHHHHHHHH---hcCCEEEEEecCc
Q 040758 708 SKPQIVLLDESTSALDE-ANEAHLYEQIE---AAGITYISVGHRR 748 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~-~se~~i~~~L~---~~g~TvI~IaHr~ 748 (788)
.+|++|++||+..-.+. .++..+...+. +.|+++|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887764 55666666654 4688999999983
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.25 E-value=0.00035 Score=84.47 Aligned_cols=32 Identities=31% Similarity=0.516 Sum_probs=29.1
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
|.+++|+.++|+||||||||||+++|++.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 47899999999999999999999999998653
No 211
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.25 E-value=7.9e-05 Score=72.69 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=30.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEEe
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG--KITFY 560 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G--~I~~~ 560 (788)
++|+.++|+|++||||||+.++|++.+.+ .| .|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 47999999999999999999999998766 56 56554
No 212
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.20 E-value=0.00012 Score=74.97 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=32.4
Q ss_pred eeeeeEEEe---CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 516 VRDLSLVIN---EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 516 L~~isl~i~---~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
|.+.|+++. +|..++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999888 777765
No 213
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.20 E-value=0.0001 Score=80.44 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=35.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
+++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 4678999999999999999999999999999999886544
No 214
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.16 E-value=8.9e-05 Score=73.55 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=31.8
Q ss_pred EEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 505 TLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 505 sf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++||+ -..+++++|++.+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~-~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG-FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456764 456899999998887 578999999999999999987
No 215
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.15 E-value=0.0002 Score=68.28 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=24.4
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566655 88999999999999999987
No 216
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.10 E-value=0.00074 Score=71.44 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
...+.|+||+|+||||+++.|++...+..|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 467999999999999999999998877766554
No 217
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.08 E-value=0.00055 Score=77.30 Aligned_cols=59 Identities=5% Similarity=-0.065 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh
Q 040758 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY 751 (788)
Q Consensus 693 SGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~ 751 (788)
++.|.+-...+...+.+++++|+......-.......+.+.+++.++.+|++.+..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 34588888889999999998888766554334445677788888899999998876643
No 218
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.08 E-value=7.4e-05 Score=75.13 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.6
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEEe
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG--KITFY 560 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G--~I~~~ 560 (788)
+.+++|..++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44678999999999999999999999999988888 78774
No 219
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.93 E-value=0.003 Score=67.09 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=27.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999865
No 220
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.89 E-value=0.00013 Score=84.36 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=47.3
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
++++...|. +..+++++++++ +|+.++|+||||+|||||+++|++...+..|+|.++
T Consensus 86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 455555553 345778888888 899999999999999999999999999888888764
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.89 E-value=0.00092 Score=71.56 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
.+..+.|.||+|+|||||++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999999999999986543
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.87 E-value=0.00017 Score=76.85 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=39.5
Q ss_pred ee-eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 517 RD-LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 517 ~~-isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56 788876 999999999999999999999999999889998843
No 223
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.87 E-value=0.00015 Score=79.47 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
.+.+.++|++..|. ++.++++++|+| +|+|++|+|||||++.|.+...+..|.+
T Consensus 15 ~~~v~~~~l~~~~~--~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 15 PGYVGFANLPNQVH--RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp ------CCHHHHHH--THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CceEEeccchHHhC--CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 45789999998885 456889999987 9999999999999999998766555544
No 224
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.86 E-value=0.0018 Score=66.78 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=35.9
Q ss_pred ChhHHHHHHHHHHHc---cCCCEEEEecCCCCCCHHHHHHHHHHHHh------cCCEEEEEecCcch
Q 040758 693 SLGEQQRLAFARLLL---SKPQIVLLDESTSALDEANEAHLYEQIEA------AGITYISVGHRRTL 750 (788)
Q Consensus 693 SGGQrQRiaIARALl---~~p~iLiLDEpTSaLD~~se~~i~~~L~~------~g~TvI~IaHr~~~ 750 (788)
+.|++.+-.+.|++. .+|+++|+--..+.++... ..+.+.+.+ .+.++|+++|..++
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~-~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQD-QQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHH-HHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHH-HHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344555566777764 8888887765555555443 444444433 27899999996554
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.86 E-value=0.00045 Score=67.82 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=26.6
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.83 E-value=0.00038 Score=69.48 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=26.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+..+|..++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
No 227
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.80 E-value=0.0016 Score=66.38 Aligned_cols=51 Identities=14% Similarity=0.351 Sum_probs=37.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc-----------chhhcCCEEEEEc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR-----------TLYDFHKRVLRIS 761 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~-----------~~~~~~D~Ilvl~ 761 (788)
+|+++++||+-- |+.+.-+.+ ..|.+.|.+||++.|+. .++..||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 776543333 44555699999999942 2456899998864
No 228
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.78 E-value=0.00029 Score=80.96 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=30.9
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+++++|++.+| ..+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999 9999999999999999999554
No 229
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.77 E-value=0.00073 Score=66.31 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=20.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.+++++++..++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998887 789999999999999999997
No 230
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.73 E-value=0.00041 Score=67.94 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.++|..+.|+|++||||||+.+.|++.+.+..|.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3478999999999999999999999988877777643
No 231
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.72 E-value=0.00068 Score=65.51 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++|.+++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 232
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.64 E-value=0.0037 Score=68.29 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=28.9
Q ss_pred ccceeeeeEE---EeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 513 ATLVRDLSLV---INEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 513 ~~vL~~isl~---i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+-|+.+ +. +++|+.+.|.|++|+|||||...++.-
T Consensus 48 ~~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 48 SLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp CHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456555 33 889999999999999999998877753
No 233
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.63 E-value=0.0022 Score=67.05 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=24.5
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++++..+.|.||+|+|||||++.+++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998754
No 234
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.62 E-value=0.0043 Score=69.71 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=30.8
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566666568999999999999999999988877643
No 235
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.62 E-value=0.00096 Score=66.87 Aligned_cols=29 Identities=41% Similarity=0.598 Sum_probs=23.6
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+.++++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566654 88999999999999999875
No 236
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.59 E-value=0.00066 Score=67.83 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 708 SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
.+|.+|++||+-. +|......+.+.+.+ .+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4688999999876 788888888888876 3567788887754
No 237
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.56 E-value=0.001 Score=73.35 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=40.1
Q ss_pred EEcCCCCccceeeeeEEE---eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 506 LKTPTSKATLVRDLSLVI---NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 506 f~y~~~~~~vL~~isl~i---~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
+.+...+.+++-|+ +.. ..+..++|+|+|||||||+++.|+..+.+..+.|.+-+
T Consensus 13 ~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 13 LGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp EEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34332344566555 222 26778999999999999999999988778888888753
No 238
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.51 E-value=0.0012 Score=64.15 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
+++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 239
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.48 E-value=0.0011 Score=65.79 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
No 240
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.48 E-value=0.0011 Score=73.12 Aligned_cols=39 Identities=8% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEEe
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGL-----------WSDGRGKITFY 560 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl-----------~~p~~G~I~~~ 560 (788)
.+..|.+++|||++|+|||||++.|+|. .+|..|.+.++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~ 67 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVP 67 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEEC
Confidence 4567889999999999999999999998 67888888764
No 241
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.47 E-value=0.0015 Score=73.39 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=29.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEEee
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS------------DGRGKITFYV 561 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~------------p~~G~I~~~~ 561 (788)
-+++|+|+||+|||||++.|+|... +.+|.+.++|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 3799999999999999999999853 6678888743
No 242
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.44 E-value=0.0009 Score=73.59 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=45.7
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEE
Q 040758 699 RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 699 RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+.+|+++|..+|+++++|||| |+++...+.+.. ..|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 776654444333 3589999999998777777776554
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.43 E-value=0.00095 Score=66.24 Aligned_cols=31 Identities=39% Similarity=0.432 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+++|+|++||||||+.+.|++.+ |...++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEe
Confidence 4689999999999999999998865 455664
No 244
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.42 E-value=0.00021 Score=77.28 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=41.4
Q ss_pred CccceeeeeEEEeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 512 KATLVRDLSLVINEKEH--LLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~--iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
...+++.++..++.|+. +.+.||+|+||||+++++++...+..+.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 34688999999999998 9999999999999999999988777665444
No 245
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.32 E-value=0.00058 Score=74.24 Aligned_cols=37 Identities=19% Similarity=0.444 Sum_probs=33.7
Q ss_pred cceeeeeEEEeCCCE--EEEEcCCCCcHHHHHHHHhcCC
Q 040758 514 TLVRDLSLVINEKEH--LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~--iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998753
No 246
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.24 E-value=0.0026 Score=60.59 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
No 247
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.21 E-value=0.0012 Score=68.40 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=30.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+++..+.|+|++||||||+.+.|++.+. .|.+.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~ 64 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIID 64 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEEC
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEe
Confidence 566788999999999999999999998765 3556664
No 248
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.20 E-value=0.0019 Score=62.84 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
No 249
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.19 E-value=0.00092 Score=68.67 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMA---GLWSDGRGKI 557 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~---gl~~p~~G~I 557 (788)
.-+++|+||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999999 5444444544
No 250
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.16 E-value=0.0021 Score=62.16 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.11 E-value=3.7e-06 Score=88.15 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=54.4
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCE--EEEecCCCCCCHHHH---------HHHHHHHHh--cCCEEEEEec
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQI--VLLDESTSALDEANE---------AHLYEQIEA--AGITYISVGH 746 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~i--LiLDEpTSaLD~~se---------~~i~~~L~~--~g~TvI~IaH 746 (788)
++++. ++++..+|+| ||+++||+++.+|++ +|+||+|++||...+ ..+++.++. +|+|.+.++|
T Consensus 161 ~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~ 238 (261)
T 2eyu_A 161 ILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAM 238 (261)
T ss_dssp HEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHH
T ss_pred HhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHH
Confidence 45554 5666678999 999999999999999 999999999998743 345666654 7999999999
Q ss_pred Ccc
Q 040758 747 RRT 749 (788)
Q Consensus 747 r~~ 749 (788)
|.+
T Consensus 239 r~~ 241 (261)
T 2eyu_A 239 EAS 241 (261)
T ss_dssp HHC
T ss_pred HHh
Confidence 975
No 252
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.10 E-value=0.01 Score=58.37 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=37.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcc-----------hhhcCCEEEEEccC
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT-----------LYDFHKRVLRISTV 763 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~-----------~~~~~D~Ilvl~~g 763 (788)
+++++++||+-- +|++....+....+ .|..+|+.+++.+ ++..||.+..|+.-
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~-~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD-RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH-TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBC
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH-CCCCEEEEeeccccccCCccchHHHHHHhhheEEeeee
Confidence 578999999864 66654444433333 4899999999544 45679999888643
No 253
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.08 E-value=0.0018 Score=69.02 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++.+++|+|++|+|||||++.|.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
No 254
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.08 E-value=0.0031 Score=60.85 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
|..+.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998654
No 255
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.02 E-value=0.0027 Score=62.46 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
No 256
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.99 E-value=0.0017 Score=63.53 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITF 559 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~ 559 (788)
-..++|+|+||||||||++.|.+.+.+. -|.|..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3579999999999999999999876543 255555
No 257
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.98 E-value=0.0031 Score=64.28 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.3
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
-++|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999986
No 258
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.96 E-value=0.0071 Score=65.41 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999998754
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.96 E-value=0.0034 Score=59.93 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 260
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.94 E-value=0.0024 Score=65.78 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=25.5
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666655 99999999999999999998764
No 261
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.87 E-value=0.0041 Score=61.20 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+++|+|++||||||+.++|+.. |-..+|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEc
Confidence 357999999999999999999986 666664
No 262
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.86 E-value=0.0043 Score=60.31 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|..+.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998743
No 263
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.85 E-value=0.0011 Score=66.04 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
+++|+|++||||||+++.|.+.+.+....+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999999999999988765444443
No 264
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.75 E-value=0.0049 Score=59.86 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998643
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.70 E-value=0.0046 Score=60.30 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++..+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998643
No 266
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.68 E-value=0.0097 Score=63.66 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.2
Q ss_pred EeCCCEEEEEcCCCCcHHHH-HHHHhcC
Q 040758 523 INEKEHLLVMGPSGSGKTSL-LRAMAGL 549 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTL-l~lL~gl 549 (788)
+++| ++.|.||+|+||||| +++++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 6789 899999999999999 4444443
No 267
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.67 E-value=0.0098 Score=65.09 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=26.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++..+++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 47778888774 78899999999999999986
No 268
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.66 E-value=0.0058 Score=60.22 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|..++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.63 E-value=0.0054 Score=58.26 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 040758 527 EHLLVMGPSGSGKTSLLRAM 546 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL 546 (788)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 270
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.62 E-value=0.052 Score=60.74 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
++.+++++|++|+||||++.-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999876654344543
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.61 E-value=0.0052 Score=60.82 Aligned_cols=22 Identities=36% Similarity=0.851 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.|+||||||||||++.|..-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999887544
No 272
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.60 E-value=0.0054 Score=61.44 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.+-+++|+|++||||||+.+.|+.+ |...++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id 33 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVID 33 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEE
Confidence 3568999999999999999999983 555553
No 273
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.52 E-value=0.022 Score=61.08 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=25.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999998875
No 274
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.50 E-value=0.0086 Score=65.42 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------CCCCCCceEEEe
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG-----------LWSDGRGKITFY 560 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g-----------l~~p~~G~I~~~ 560 (788)
|-+++|||.+|+|||||++.|++ -.+|..|.+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~ 47 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecC
Confidence 46799999999999999999998 456778887764
No 275
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.50 E-value=0.0064 Score=58.92 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++..+.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999844
No 276
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.49 E-value=0.015 Score=65.38 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.0
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+-|+.+.--+++|+.+.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34555543589999999999999999999776664
No 277
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.44 E-value=0.0073 Score=58.97 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
No 278
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.42 E-value=0.0077 Score=59.70 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++|..++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
No 279
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.36 E-value=0.023 Score=62.19 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
-+++|+.+.|.||+|+|||||..-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999876654
No 280
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.36 E-value=0.0083 Score=59.52 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|..++|+|+.||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999853
No 281
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.35 E-value=0.034 Score=55.14 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=37.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc-----------chhhcCCEEEEEc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR-----------TLYDFHKRVLRIS 761 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~-----------~~~~~~D~Ilvl~ 761 (788)
+.+++++||+-- +|++... ..+.+...|++||+..+|. .++..||.|..|.
T Consensus 81 ~~dvViIDEaqf-l~~~~v~-~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEIVE-IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHHHH-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHHHH-HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999765 7766533 3444445699999999854 3567899998775
No 282
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.32 E-value=0.0082 Score=59.29 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
+|..++|.|++||||||+.+.|+.-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876554
No 283
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.30 E-value=0.0072 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 284
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.25 E-value=0.0072 Score=62.54 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 285
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.21 E-value=0.014 Score=56.72 Aligned_cols=28 Identities=29% Similarity=0.416 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcC----CCCCCc
Q 040758 528 HLLVMGPSGSGKTSLLRAM-AGL----WSDGRG 555 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL-~gl----~~p~~G 555 (788)
+++|+|++|+|||||++.+ .+- +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 5999999999999999654 444 567766
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.21 E-value=0.0093 Score=57.26 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
..+.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
No 287
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.13 E-value=0.11 Score=59.79 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=31.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhc----CCCCCCceEEE
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAG----LWSDGRGKITF 559 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g----l~~p~~G~I~~ 559 (788)
+.+.+..+-+++|.|.+|||||++++.|.. -+.|++-++.+
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil 251 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM 251 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 445556788999999999999999997543 45677766665
No 288
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.09 E-value=0.0097 Score=61.98 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998743
No 289
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.08 E-value=0.0092 Score=63.01 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.|..+.|+|||||||||+.+.|+.-++ .|.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~I 64 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVI 64 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEE
Confidence 467899999999999999999987543 355665
No 290
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.011 Score=57.42 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+..++|+|++||||||+.+.|+.-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
No 291
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.02 E-value=0.0093 Score=58.35 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=24.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+++.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998754
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.01 E-value=0.011 Score=57.29 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987554
No 293
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.00 E-value=0.02 Score=53.80 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
No 294
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.94 E-value=0.0091 Score=57.68 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=18.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..+.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998543
No 295
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.92 E-value=0.013 Score=58.66 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++|..+.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998754
No 296
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.90 E-value=0.012 Score=55.25 Aligned_cols=24 Identities=33% Similarity=0.691 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++++|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
No 297
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.86 E-value=0.016 Score=61.84 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=31.0
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
...+++..+.+ .|.-++|+|+||+||||+...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 35778888888 799999999999999999998887
No 298
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.82 E-value=0.013 Score=57.09 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
.+++|+|++|||||||++.|++.+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 478999999999999999999876543
No 299
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.79 E-value=0.01 Score=60.43 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=21.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+.+|+.++++|||||||||++.+++
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 3579999999999999999988764
No 300
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.013 Score=56.81 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.-.++++|++|+|||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
No 301
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.77 E-value=0.015 Score=55.04 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
No 302
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.76 E-value=0.013 Score=54.94 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 303
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.73 E-value=0.013 Score=57.68 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 304
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.72 E-value=0.015 Score=56.83 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 305
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.71 E-value=0.016 Score=58.55 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..+.|+|++||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998544
No 306
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.67 E-value=0.018 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998644
No 307
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.66 E-value=0.016 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.66 E-value=0.014 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 309
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.66 E-value=0.017 Score=55.23 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+.++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999863
No 310
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.63 E-value=0.015 Score=54.27 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 311
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.61 E-value=0.016 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 312
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.59 E-value=0.016 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 313
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.59 E-value=0.016 Score=57.72 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996543
No 314
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.57 E-value=0.021 Score=54.35 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.-+++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999873
No 315
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.56 E-value=0.016 Score=58.23 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998644
No 316
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.55 E-value=0.017 Score=60.54 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
No 317
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.55 E-value=0.017 Score=54.86 Aligned_cols=22 Identities=50% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 318
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.55 E-value=0.016 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 319
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.51 E-value=0.017 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
No 320
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.51 E-value=0.017 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
No 321
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.50 E-value=0.016 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999998643
No 322
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.50 E-value=0.017 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 323
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.50 E-value=0.016 Score=54.41 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 324
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.49 E-value=0.017 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
--.++|+|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 325
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.47 E-value=0.017 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 69999999999999999998754
No 326
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.46 E-value=0.017 Score=54.07 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 327
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.45 E-value=0.018 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
No 328
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.44 E-value=0.019 Score=54.55 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 329
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.43 E-value=0.018 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
No 330
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.42 E-value=0.018 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 331
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.40 E-value=0.018 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
No 332
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.40 E-value=0.019 Score=57.25 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
No 333
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.38 E-value=0.019 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
+++|+|++|+|||||++.+.|-+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999986543
No 334
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.37 E-value=0.02 Score=55.62 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 335
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.36 E-value=0.02 Score=56.47 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+++|.|++||||||+.+.|+.-+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998644
No 336
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.34 E-value=0.019 Score=59.88 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|||++|+|||||++.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988643
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.33 E-value=0.02 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
No 338
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.32 E-value=0.02 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999875
No 339
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.26 E-value=0.02 Score=53.66 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 340
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.23 E-value=0.082 Score=59.81 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=56.2
Q ss_pred CCCCChhHHHHHHHHH--HHcc---------------CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh
Q 040758 689 SSVLSLGEQQRLAFAR--LLLS---------------KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY 751 (788)
Q Consensus 689 g~~LSGGQrQRiaIAR--ALl~---------------~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~ 751 (788)
...+||||+|-.-+|. ++++ .=.+++|||| |-+|.+..+..++.+++.|-=+|++|=. .+.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~-~i~ 454 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE-NIS 454 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS-SCC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc-hhh
Confidence 4459999999543433 2222 1247999999 9999999999999999999999999987 666
Q ss_pred hcCCEEEEEc
Q 040758 752 DFHKRVLRIS 761 (788)
Q Consensus 752 ~~~D~Ilvl~ 761 (788)
.+.|.++.+-
T Consensus 455 p~v~~~~~~~ 464 (483)
T 3euj_A 455 PERGTTYKLV 464 (483)
T ss_dssp CSSSEEEECC
T ss_pred hccCceEEEE
Confidence 7889888774
No 341
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.21 E-value=0.021 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 342
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.20 E-value=0.18 Score=51.47 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=42.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecC-----------cchhhcCCEEEEEc
Q 040758 708 SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHR-----------RTLYDFHKRVLRIS 761 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr-----------~~~~~~~D~Ilvl~ 761 (788)
.+.+++++||+--..| ..++.+.+.+.|+.||+..++ ..++..||.|..|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999998865 666667777789999999999 24678899998875
No 343
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.18 E-value=0.024 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
++..+.|.||+|+|||||++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876543
No 344
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.18 E-value=0.021 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|+.|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 345
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.15 E-value=0.022 Score=54.81 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 346
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.14 E-value=0.023 Score=56.27 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999874
No 347
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.14 E-value=0.025 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 348
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.14 E-value=0.017 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.-.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999874
No 349
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.13 E-value=0.033 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 350
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.12 E-value=10 Score=43.81 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=5.4
Q ss_pred EeeeEEEcCC
Q 040758 501 IEDLTLKTPT 510 (788)
Q Consensus 501 ~~nvsf~y~~ 510 (788)
++|++|..+.
T Consensus 371 l~~isl~i~~ 380 (598)
T 3qf4_B 371 LKDITFHIKP 380 (598)
T ss_dssp CCSEEEECCT
T ss_pred ccceEEEEcC
Confidence 4566665543
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.12 E-value=0.022 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 352
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.11 E-value=0.055 Score=62.72 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+..+.|.|+.|+||||+++.|...+.....+|.+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 46899999999999999999998766544344443
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.11 E-value=0.024 Score=58.10 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++-.++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998543
No 354
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.08 E-value=0.023 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
No 355
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.07 E-value=0.023 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
-.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999975
No 356
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.06 E-value=0.023 Score=53.89 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 357
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.06 E-value=0.022 Score=56.11 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
..+.|.||+|+|||||++.++.......+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 78999999999999999999987655444454
No 358
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.03 E-value=0.014 Score=61.71 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
No 359
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.02 E-value=0.062 Score=65.29 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
..+.|+||+|+|||++.+.|+.......+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~ 617 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEE 617 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 47899999999999999999987655443
No 360
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.02 E-value=0.025 Score=58.60 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
No 361
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.00 E-value=0.026 Score=58.45 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++..+.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
No 362
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.98 E-value=0.045 Score=52.24 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040758 528 HLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++|+|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999998
No 363
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.025 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 364
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.96 E-value=0.019 Score=62.82 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
No 365
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.95 E-value=0.026 Score=58.04 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998743
No 366
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.92 E-value=0.026 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 367
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.91 E-value=0.023 Score=55.77 Aligned_cols=22 Identities=36% Similarity=0.764 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
No 368
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.89 E-value=0.026 Score=53.90 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999853
No 369
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.88 E-value=0.028 Score=57.80 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999743
No 370
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.87 E-value=0.027 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 371
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.87 E-value=0.026 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.85 E-value=0.03 Score=56.12 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|..+.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
No 373
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.81 E-value=0.034 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+..+.|+||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345779999999999999999998754
No 374
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.80 E-value=0.041 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
-+++|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999987
No 375
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.79 E-value=0.028 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 376
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.73 E-value=0.03 Score=59.47 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|||++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999984
No 377
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.72 E-value=0.032 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.=+++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999863
No 378
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.69 E-value=0.029 Score=55.62 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-.++|+|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 379
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.69 E-value=0.02 Score=57.03 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-+++|+|++|+|||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 380
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.68 E-value=0.03 Score=54.36 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 699999999999999999986
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.68 E-value=0.031 Score=58.73 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
No 382
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.67 E-value=0.03 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 383
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.65 E-value=0.036 Score=59.75 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998653
No 384
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.65 E-value=0.03 Score=54.12 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 385
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.64 E-value=0.03 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.63 E-value=0.031 Score=53.51 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999885
No 387
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.031 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999753
No 388
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.61 E-value=0.033 Score=58.20 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 389
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.61 E-value=0.046 Score=54.55 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
..++..-+.+ .|..++|+||||+|||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567766665 5888999999999999999998764
No 390
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.60 E-value=0.031 Score=54.68 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
No 391
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.60 E-value=0.031 Score=54.04 Aligned_cols=22 Identities=45% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 392
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.56 E-value=0.036 Score=54.21 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 393
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.56 E-value=0.034 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 394
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.50 E-value=0.034 Score=53.15 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999874
No 395
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.49 E-value=0.036 Score=55.68 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 396
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.49 E-value=0.054 Score=52.80 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=27.6
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+..++..-+.+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34556655555 488999999999999999987775
No 397
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.49 E-value=0.033 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36999999999999999999874
No 398
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.49 E-value=0.035 Score=55.35 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
No 399
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.48 E-value=0.026 Score=61.52 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=23.0
Q ss_pred cCCCCCChhHHHHHHHHHHH---cc--CCCEEEEecCC
Q 040758 687 EWSSVLSLGEQQRLAFARLL---LS--KPQIVLLDEST 719 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARAL---l~--~p~iLiLDEpT 719 (788)
+.|.++|+||+||++|+|+| ++ +++++++||||
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 44567999999999999999 77 89999999997
No 400
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.47 E-value=0.037 Score=57.35 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|+|||||++.|+|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 401
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.46 E-value=0.031 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
No 402
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.46 E-value=0.035 Score=53.70 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
No 403
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.43 E-value=0.037 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998644
No 404
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.42 E-value=0.038 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 405
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.42 E-value=0.052 Score=53.75 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 406
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.42 E-value=0.039 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
=+++++|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999985
No 407
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.41 E-value=0.035 Score=53.89 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999999864
No 408
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.37 E-value=0.043 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++++|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 699999999999999999988544
No 409
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.34 E-value=0.043 Score=57.07 Aligned_cols=31 Identities=19% Similarity=0.497 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
.+++++|.+|+|||||++.|.|-..+..|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 5899999999999999999998766544443
No 410
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.33 E-value=0.037 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.29 E-value=0.036 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 412
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.037 Score=54.75 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998775
No 413
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.28 E-value=0.039 Score=58.66 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 414
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.25 E-value=0.023 Score=62.33 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=39.4
Q ss_pred cEEEeeeEEEcCCCCcccee-----------eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 498 LLDIEDLTLKTPTSKATLVR-----------DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~-----------~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
...|++++--||. .+.-++ |.=+.|-+|++.+|+|++|+|||||+..|++..
T Consensus 137 r~~fe~l~Pi~P~-~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 137 RVNFDNLTPDYPR-ERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCGGGSCEECCC-SBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCch-hhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 4456666655654 333445 566789999999999999999999999888753
No 415
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.25 E-value=0.032 Score=55.67 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998755
No 416
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.23 E-value=0.038 Score=54.24 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
No 417
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.22 E-value=0.039 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 418
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.22 E-value=0.038 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-.++|+|++|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
No 419
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.22 E-value=0.048 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..+.|+|+.||||||+.+.|+.-+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998654
No 420
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.19 E-value=0.26 Score=63.47 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=30.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
=+++|+.+.|.||+|+|||||+..++.......|.+.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vly 765 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 765 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEE
Confidence 38999999999999999999999888755444455544
No 421
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.17 E-value=0.04 Score=53.10 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 422
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.16 E-value=0.04 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 423
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.16 E-value=0.041 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
No 424
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.16 E-value=0.041 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999863
No 425
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.13 E-value=0.04 Score=56.17 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+|..+.|.|++||||||+.+.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987654
No 426
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.11 E-value=0.043 Score=57.99 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999864
No 427
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.11 E-value=0.046 Score=54.31 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999986
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.10 E-value=0.047 Score=54.02 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 429
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.10 E-value=0.041 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999853
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.09 E-value=0.042 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 431
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.06 E-value=0.046 Score=56.54 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.|.|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 432
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.04 E-value=0.049 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999863
No 433
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.03 E-value=0.048 Score=54.94 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
-+|..+.|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876543
No 434
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.02 E-value=0.034 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999886
No 435
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.02 E-value=0.041 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+..+.|+||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999987543
No 436
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.02 E-value=0.05 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+++++|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 437
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.01 E-value=0.042 Score=61.81 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.6
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+++.+ +.+-+|++++|+|++|+|||||++.|++-.....|.|.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 355555 677889999999999999999999998765543444444
No 438
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.97 E-value=0.047 Score=56.67 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++++|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
No 439
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=92.93 E-value=0.048 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.=.++|+|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999975
No 440
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.90 E-value=0.047 Score=52.91 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999988864
No 441
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.89 E-value=0.055 Score=55.48 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
No 442
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=92.89 E-value=0.034 Score=53.24 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=9.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
No 443
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.87 E-value=0.048 Score=58.90 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999997654
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.84 E-value=0.052 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 445
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.79 E-value=17 Score=41.75 Aligned_cols=31 Identities=6% Similarity=-0.038 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKD 240 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~ 240 (788)
+..+..+.....+.+....+...++.+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 111 (582)
T 3b60_A 81 TSYISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444555555555666666666667776664
No 446
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.78 E-value=0.048 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
=.++|+|++|+|||||++.|.|-.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999864
No 447
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.78 E-value=0.06 Score=54.26 Aligned_cols=27 Identities=19% Similarity=0.339 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..+.+.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987554
No 448
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=92.77 E-value=0.048 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
No 449
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.75 E-value=0.056 Score=60.07 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.+.+.|+|++||||||+.+.|+.-+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998643
No 450
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.73 E-value=17 Score=41.68 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040758 209 PFFVLRDYARETLALRWRSWMTKYYMERYLKD 240 (788)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~ 240 (788)
++..+..++...++.+....+...++.+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 111 (582)
T 3b5x_A 80 LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555566666666666667776664
No 451
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.69 E-value=0.066 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 452
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=92.69 E-value=0.058 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|||++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998643
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.63 E-value=0.055 Score=56.76 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
..+.|+|++||||||+.+.|+..+ .|-..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEe
Confidence 468999999999999999998622 244555
No 454
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.62 E-value=0.18 Score=60.41 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC-CCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW-SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~-~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
+|--.+.|+||+|+|||++.+.|+... ....--|.+| ++-.
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~--------------------------------------~s~~ 560 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID--------------------------------------MSEY 560 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE--------------------------------------GGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe--------------------------------------chhc
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCc
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL 682 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 682 (788)
+....
T Consensus 561 ~~~~~--------------------------------------------------------------------------- 565 (758)
T 3pxi_A 561 MEKHS--------------------------------------------------------------------------- 565 (758)
T ss_dssp CSSCC---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Q ss_pred cccccCCCCCChhHHHHHHHHHHHccCC-CEEEEecCCCCCCHHHHHHHHHHHHh-------------cCCEEEEEec--
Q 040758 683 DTTYEWSSVLSLGEQQRLAFARLLLSKP-QIVLLDESTSALDEANEAHLYEQIEA-------------AGITYISVGH-- 746 (788)
Q Consensus 683 ~t~~e~g~~LSGGQrQRiaIARALl~~p-~iLiLDEpTSaLD~~se~~i~~~L~~-------------~g~TvI~IaH-- 746 (788)
.|+|+ +..++-+.| .+|+|||. ..+++.....+.+.|.+ .+..+|++|+
T Consensus 566 ---------~~~~~-----l~~~~~~~~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 566 ---------TSGGQ-----LTEKVRRKPYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ---------CC--------CHHHHHHCSSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ---------cccch-----hhHHHHhCCCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Q ss_pred ---------------CcchhhcCCEEEEEc
Q 040758 747 ---------------RRTLYDFHKRVLRIS 761 (788)
Q Consensus 747 ---------------r~~~~~~~D~Ilvl~ 761 (788)
|.++...+|.++.+.
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecC
No 455
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=92.61 E-value=0.064 Score=54.18 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=27.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
++|..+.+-|++||||||+.+.|..-+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 46999999999999999999999987665 3443
No 456
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.60 E-value=0.054 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
No 457
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.59 E-value=0.069 Score=49.87 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=25.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
+.+..+.|.||+|+|||++.+.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 34567999999999999999999986554333
No 458
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.57 E-value=0.26 Score=49.55 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcc-----------hhhcCCEEEEEcc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT-----------LYDFHKRVLRIST 762 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~-----------~~~~~D~Ilvl~~ 762 (788)
+.+++++||+-- +|++.. .+.+.+...|+.||+..+|.+ ++..||.|..|..
T Consensus 101 ~~dvViIDEaQF-~~~~~V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECccc-CCHHHH-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 579999999976 876655 334444556999999999533 5678999998864
No 459
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.57 E-value=0.057 Score=55.10 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++...+.|.||+|+||||+++.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345668999999999999999998754
No 460
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.56 E-value=17 Score=41.75 Aligned_cols=39 Identities=10% Similarity=-0.082 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040758 202 GAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKD 240 (788)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~ 240 (788)
++.++..++.++..+....++.+....+....+.+.++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 107 (578)
T 4a82_A 69 IFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQAL 107 (578)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333344445555566666666666666666667776664
No 461
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.55 E-value=0.06 Score=54.76 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..++|.|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
No 462
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.54 E-value=0.062 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..+.+.|++||||||+.+.|...+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999987554
No 463
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.43 E-value=0.025 Score=60.45 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=29.2
Q ss_pred cceeeeeEEEeCC--CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 514 TLVRDLSLVINEK--EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 514 ~vL~~isl~i~~G--e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+++.+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3555555555555 4599999999999999999998653
No 464
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.39 E-value=0.046 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
=.++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999864
No 465
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.35 E-value=0.032 Score=55.26 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
No 466
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.33 E-value=0.064 Score=57.55 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 467
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.33 E-value=0.059 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999988864
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.32 E-value=0.042 Score=56.76 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++..++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
No 469
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.18 E-value=0.021 Score=58.86 Aligned_cols=32 Identities=41% Similarity=0.657 Sum_probs=25.1
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.++++..++| +.|.||+|+|||||++.+++.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 44444555555 889999999999999999874
No 470
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.15 E-value=0.028 Score=67.93 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=29.8
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.++.+.+|+.+.|+||+|+|||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 466788999999999999999999999998764
No 471
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.13 E-value=0.067 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999998753
No 472
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.09 E-value=0.066 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999988874
No 473
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.02 E-value=0.036 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=4.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999988764
No 474
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=91.86 E-value=0.067 Score=54.08 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=23.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..++.|+||.||||+|..+.|+.-|
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556789999999999999999998654
No 475
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=91.85 E-value=0.075 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.83 E-value=0.083 Score=56.28 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3478999999999999999998765
No 477
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.74 E-value=0.024 Score=63.39 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+++++|++|+||||++..|++.+.....++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999987655556765
No 478
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=91.72 E-value=0.078 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+++|+|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998753
No 479
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.69 E-value=0.091 Score=55.97 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=24.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
-+++|+.+.|.||+|+|||||..-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
No 480
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=91.66 E-value=0.087 Score=55.89 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++-+++|+|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999987653
No 481
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.54 E-value=0.083 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|++|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999885
No 482
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.49 E-value=0.092 Score=55.08 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++..+.|.||+|+||||+.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999888754
No 483
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.47 E-value=0.19 Score=65.50 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=31.8
Q ss_pred cceeeeeEE---EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 514 TLVRDLSLV---INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 514 ~vL~~isl~---i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+-|+.+ +. +++|+.+.|.||+|+|||||..-++.-.....+.+.+
T Consensus 369 ~~LD~l-LG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vly 416 (2050)
T 3cmu_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 416 (2050)
T ss_dssp HHHHHH-HSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHH-hccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 345544 33 8999999999999999999988776543333334433
No 484
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=91.41 E-value=0.11 Score=54.49 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
+-.++++|.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 347999999999999999999986544333
No 485
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.34 E-value=0.12 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++|+.+.|.|++|+|||||..-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999975443
No 486
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.29 E-value=0.095 Score=57.82 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..++|+||||||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
No 487
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.74 E-value=0.12 Score=50.41 Aligned_cols=22 Identities=50% Similarity=0.705 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+.|.||.|+|||||++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
No 488
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=90.73 E-value=0.1 Score=56.92 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++..++++|++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999986
No 489
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.71 E-value=0.11 Score=55.44 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+...+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999865
No 490
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.63 E-value=28 Score=39.95 Aligned_cols=13 Identities=0% Similarity=0.120 Sum_probs=9.1
Q ss_pred EEeeeEEEcCCCC
Q 040758 500 DIEDLTLKTPTSK 512 (788)
Q Consensus 500 ~~~nvsf~y~~~~ 512 (788)
.++|++|.-+.++
T Consensus 358 ~l~~isl~i~~Ge 370 (587)
T 3qf4_A 358 VLSGVNFSVKPGS 370 (587)
T ss_dssp SEEEEEEEECTTC
T ss_pred ceeceEEEEcCCC
Confidence 4788888876543
No 491
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=90.52 E-value=0.12 Score=56.94 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|||.+|+|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 492
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.47 E-value=0.13 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.|+||.||||+|..+.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999755
No 493
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=90.47 E-value=0.13 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
|..|+|-|+-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
No 494
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.44 E-value=0.11 Score=57.93 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|||++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
No 495
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.40 E-value=0.12 Score=56.02 Aligned_cols=25 Identities=48% Similarity=0.822 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..+.|.||+|+||||+.+.|+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999876
No 496
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=90.32 E-value=0.11 Score=56.76 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++..++++|.+|+|||||+|.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5788999999999999999999985
No 497
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.71 E-value=0.054 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.=.++++|++|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34699999999999999988764
No 498
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.08 E-value=0.095 Score=48.83 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+.+.-+.|.||+|+|||++.+.|.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3456699999999999999999988654
No 499
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=90.08 E-value=0.1 Score=51.90 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=30.2
Q ss_pred HHHHHHHHccCCCEEEEecCCC-----CCCHHHHHHHHHHHHh
Q 040758 699 RLAFARLLLSKPQIVLLDESTS-----ALDEANEAHLYEQIEA 736 (788)
Q Consensus 699 RiaIARALl~~p~iLiLDEpTS-----aLD~~se~~i~~~L~~ 736 (788)
.-.|++.+..+|..-..++|+. .+|+...+.+.+.++.
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEV 208 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhh
Confidence 4478889999999988888876 6888888888777654
No 500
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.02 E-value=0.13 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++...+.|.||+|+|||||++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999875
Done!