BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040760
(108 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2
SV=1
Length = 486
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/49 (83%), Positives = 45/49 (91%)
Query: 50 KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
+QG Q+SD PK+ YIHVRARRGQATNSHSL ERVRREKISERMKFLQ+L
Sbjct: 287 QQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDL 335
>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2
SV=1
Length = 366
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 42/49 (85%)
Query: 50 KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
K+ SQ+ + PKE YIH+RARRGQATNSHSL ERVRREKISERM+ LQ L
Sbjct: 190 KESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQEL 238
>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2
SV=1
Length = 390
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
Query: 54 QTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEE-TGRS 108
Q SD K+ YIH+RARRGQATNSHSL ERVRREKISERMKFLQ+L ++ TG++
Sbjct: 211 QPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKA 266
>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137
PE=2 SV=1
Length = 286
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 2/60 (3%)
Query: 39 EGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
EG G + K+GS+ ++P +YIHVRARRGQAT+SHSL ERVRREKISERM+ LQNL
Sbjct: 111 EGVEGRKSKKQKRGSK--EEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNL 168
>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2
SV=1
Length = 456
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/43 (79%), Positives = 38/43 (88%)
Query: 56 SDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
S P ++YIHVRARRGQAT+SHSL ERVRREKISERMK LQ+L
Sbjct: 248 SIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDL 290
>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2
SV=1
Length = 335
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/39 (84%), Positives = 37/39 (94%)
Query: 60 KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
K +YIHVRARRGQAT+SHS+ ERVRREKISERMKFLQ+L
Sbjct: 166 KTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDL 204
>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2
SV=1
Length = 498
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%)
Query: 50 KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
K + +P ++YIHVRARRGQAT+SHSL ERVRREKI ERMK LQ+L
Sbjct: 285 KSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDL 333
>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1
Length = 343
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/41 (78%), Positives = 37/41 (90%)
Query: 58 QPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
+P ++YIHVRARRGQAT+SHSL ER RREKISERMK LQ+L
Sbjct: 128 EPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 168
>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2
SV=1
Length = 371
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 50 KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
K ++ + PK+ YIHVRARRGQAT+SHSL ER RREKISERM LQ+L
Sbjct: 176 KDDAKPPEAPKD-YIHVRARRGQATDSHSLAERARREKISERMTLLQDL 223
>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2
SV=3
Length = 337
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 56 SDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
S+ K +YIHVRARRGQAT+ HSL ER RREKIS++MK+LQ++
Sbjct: 175 SENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDI 217
>sp|Q9LV17|BH079_ARATH Transcription factor bHLH79 OS=Arabidopsis thaliana GN=BHLH79 PE=2
SV=1
Length = 281
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 35/41 (85%)
Query: 58 QPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
+P ++YIHVRARRGQAT+ HSL ER RREKISE+M LQ++
Sbjct: 145 EPPKDYIHVRARRGQATDRHSLAERARREKISEKMTALQDI 185
>sp|Q3EAI1|BH060_ARATH Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2
SV=1
Length = 426
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 32/39 (82%)
Query: 60 KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
K Y+HVRARRGQAT+SHSL ER RREKI+ RMK LQ L
Sbjct: 198 KLPYVHVRARRGQATDSHSLAERARREKINARMKLLQEL 236
>sp|Q8VZ02|BH048_ARATH Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2
SV=1
Length = 327
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 32/39 (82%)
Query: 60 KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
K Y+HVRARRGQAT++HSL ER RREKI+ RMK LQ L
Sbjct: 179 KLPYVHVRARRGQATDNHSLAERARREKINARMKLLQEL 217
>sp|A4D998|BH075_ARATH Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2
SV=1
Length = 223
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 28/41 (68%), Positives = 36/41 (87%)
Query: 58 QPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
Q ++ +HVRA+RGQAT+SHSL ERVRREKI+ER+K LQ+L
Sbjct: 96 QKPKDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDL 136
>sp|Q93VJ4|BEE2_ARATH Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2
SV=1
Length = 304
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 60 KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
K +YIHVRARRG+AT+ HSL ER RREKIS++MK LQ++
Sbjct: 135 KPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDI 173
>sp|Q8GWK7|BEE3_ARATH Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2
SV=1
Length = 261
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 40/51 (78%)
Query: 48 RGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
RGK+ ++ + E +HVRARRGQAT+SHS+ ERVRR KI+ER+K LQ++
Sbjct: 129 RGKRSKNREEEKEREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDI 179
>sp|Q8GZ13|BEE1_ARATH Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2
SV=1
Length = 260
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 32/35 (91%)
Query: 64 IHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
+HVRARRGQAT+SHSL ERVRR KI+ER++ LQ++
Sbjct: 143 VHVRARRGQATDSHSLAERVRRGKINERLRCLQDM 177
>sp|Q9ZUG9|BH066_ARATH Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2
SV=1
Length = 350
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 55 TSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
T P + +RARRGQAT+ HS+ ER+RRE+I+ERMK LQ L
Sbjct: 127 TVAAPPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQEL 170
>sp|Q8S3D5|BH069_ARATH Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2
SV=2
Length = 310
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
VRARRGQAT+ HS+ ER+RRE+I+ERMK LQ L
Sbjct: 130 VRARRGQATDPHSIAERLRRERIAERMKSLQEL 162
>sp|Q9LSQ3|BH082_ARATH Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2
SV=1
Length = 297
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
VRARRGQAT+ HS+ ER+RRE+I+ERMK LQ L
Sbjct: 99 VRARRGQATDPHSIAERLRRERIAERMKSLQEL 131
>sp|Q9C690|BH122_ARATH Transcription factor bHLH122 OS=Arabidopsis thaliana GN=BHLH122
PE=1 SV=1
Length = 379
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
+RA+RG AT+ S+ ERVRR KISERM+ LQ+L
Sbjct: 304 IRAKRGCATHPRSIAERVRRTKISERMRKLQDL 336
>sp|Q66GR3|BH130_ARATH Transcription factor bHLH130 OS=Arabidopsis thaliana GN=BHLH130
PE=1 SV=1
Length = 359
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
+RA+RG AT+ S+ ERVRR +ISERM+ LQ L
Sbjct: 279 IRAKRGCATHPRSIAERVRRTRISERMRKLQEL 311
>sp|Q84WK0|BH085_ARATH Transcription factor bHLH85 OS=Arabidopsis thaliana GN=BHLH85 PE=2
SV=1
Length = 352
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 29 GGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKI 88
GGG+D S + L L GK RA RG AT+ SL R RRE+I
Sbjct: 244 GGGEDSSSKEDDPSKALNLNGK---------------TRASRGAATDPQSLYARKRRERI 288
Query: 89 SERMKFLQNL 98
+ER++ LQNL
Sbjct: 289 NERLRILQNL 298
>sp|Q8LEG1|BH054_ARATH Transcription factor bHLH54 OS=Arabidopsis thaliana GN=BHLH54 PE=2
SV=1
Length = 258
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 34 EPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHV----RARRGQATNSHSLVERVRREKIS 89
E +T++ + N + G+ S +SD K V RA +G AT+ SL R RREKI+
Sbjct: 132 ESNTVDESNTNWV-DGQSLSNSSDDEKASVTSVKGKTRATKGTATDPQSLYARKRREKIN 190
Query: 90 ERMKFLQNL 98
ER+K LQNL
Sbjct: 191 ERLKTLQNL 199
>sp|Q9M0R0|BH081_ARATH Transcription factor bHLH81 OS=Arabidopsis thaliana GN=BHLH81 PE=2
SV=1
Length = 262
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 64 IHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
VRA+RG AT+ S+ ERVRR +IS+R++ LQ L
Sbjct: 182 FRVRAKRGCATHPRSIAERVRRTRISDRIRKLQEL 216
>sp|Q9C8P8|BH080_ARATH Transcription factor bHLH80 OS=Arabidopsis thaliana GN=BHLH80 PE=1
SV=1
Length = 259
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 26/33 (78%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
VRA+RG AT+ S+ ERVRR +IS+R++ LQ L
Sbjct: 181 VRAKRGCATHPRSIAERVRRTRISDRIRRLQEL 213
>sp|Q7XHI9|BH084_ARATH Transcription factor bHLH84 OS=Arabidopsis thaliana GN=BHLH84 PE=2
SV=1
Length = 328
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
RA RG AT+ SL R RRE+I+ER++ LQ+L
Sbjct: 237 TRASRGAATDPQSLYARKRRERINERLRILQHL 269
>sp|O22768|UNE12_ARATH Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2
SV=2
Length = 310
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 58 QPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETGRS 108
QP VRARRGQAT+ HS+ ER+RRE+I+ER++ LQ L + +T R+
Sbjct: 138 QPTSIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRA 188
>sp|Q7XHI7|BH127_ARATH Transcription factor bHLH127 OS=Arabidopsis thaliana GN=BHLH127
PE=2 SV=1
Length = 307
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 69 RRGQATNSHSLVERVRREKISERMKFLQNL 98
+R +A H+L ER RREKI+ERMK LQ L
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQL 176
>sp|Q8H102|BH128_ARATH Transcription factor bHLH128 OS=Arabidopsis thaliana GN=BHLH128
PE=1 SV=1
Length = 362
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
+RA+RG AT+ S+ ER RR +IS ++K LQ+L
Sbjct: 283 IRAKRGCATHPRSIAERERRTRISGKLKKLQDL 315
>sp|Q93Y00|BH007_ARATH Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2
SV=1
Length = 302
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 8/63 (12%)
Query: 54 QTSDQPKEEYIH--------VRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEET 105
Q QP H VRARRGQAT+ HS+ ER+RRE+I+ER++ LQ L + +T
Sbjct: 124 QPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT 183
Query: 106 GRS 108
R+
Sbjct: 184 DRA 186
>sp|Q9SVU7|BH056_ARATH Putative transcription factor bHLH056 OS=Arabidopsis thaliana
GN=BHLH56 PE=4 SV=2
Length = 445
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 69 RRGQATNSHSLVERVRREKISERMKFLQNL 98
+R + H+L ER RREKI+E+MK LQ L
Sbjct: 252 KRSRTAEMHNLAERRRREKINEKMKTLQQL 281
>sp|Q8GZM7|PIF1_ARATH Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1
Length = 478
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 69 RRGQATNSHSLVERVRREKISERMKFLQNL 98
+R +A H+L ER RR++I+ERMK LQ L
Sbjct: 281 KRSRAAEVHNLSERKRRDRINERMKALQEL 310
>sp|Q3E7L7|BH139_ARATH Transcription factor bHLH139 OS=Arabidopsis thaliana GN=BHLH139
PE=4 SV=1
Length = 223
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 67 RARRGQATNSHSLVERVRREKISERMKFLQNL 98
+A RG A++ SL R RRE+I++R+K LQ+L
Sbjct: 133 KANRGIASDPQSLYARKRRERINDRLKTLQSL 164
>sp|Q9SVU6|BH023_ARATH Transcription factor bHLH23 OS=Arabidopsis thaliana GN=BHLH23 PE=2
SV=1
Length = 413
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 68 ARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETGRS 108
++R +A H L ER RR+KI+E MK LQ L +T RS
Sbjct: 273 SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRS 313
>sp|Q8L5W8|PIL1_ARATH Transcription factor PIL1 OS=Arabidopsis thaliana GN=PIL1 PE=1 SV=1
Length = 416
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Query: 64 IHVRAR-----RGQATNSHSLVERVRREKISERMKFLQNL 98
+H R R R ++T H L ER RR++ +++M+ LQ+L
Sbjct: 216 VHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMRALQDL 255
>sp|Q8GZ38|UNE10_ARATH Transcription factor UNE10 OS=Arabidopsis thaliana GN=UNE10 PE=2
SV=1
Length = 399
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
V +R +A H+ ER RR+KI++RMK LQ L
Sbjct: 207 VSTKRSRAAAIHNQSERKRRDKINQRMKTLQKL 239
>sp|O80536|PIF3_ARATH Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1
Length = 524
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 68 ARRGQATNSHSLVERVRREKISERMKFLQNL 98
++R ++ H+L ER RR++I+E+M+ LQ L
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQEL 369
>sp|Q9SFZ3|BH110_ARATH Transcription factor bHLH110 OS=Arabidopsis thaliana GN=BHLH110
PE=2 SV=2
Length = 453
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 17/83 (20%)
Query: 17 SSSDSNEVE-FSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATN 75
SSS ++++E FS +EP T EG N L+ K G S +P+ E +
Sbjct: 282 SSSPTHQMEMFS-----NEPQTSEGKRHNFLMATKAGENASKKPRVE-----------SR 325
Query: 76 SHSLVERVRREKISERMKFLQNL 98
S +VR+EK+ +R+ LQ L
Sbjct: 326 SSCPPFKVRKEKLGDRIAALQQL 348
>sp|Q3J6B2|HSLV_RHOS4 ATP-dependent protease subunit HslV OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=hslV PE=3 SV=1
Length = 185
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 26 FSGGGGQDEP---STLEGTGGNLLLRGKQGSQTSDQPKEEY----IHVRARRGQATNSHS 78
+G G EP T G+GGN L +G +D P EE + + A TN +
Sbjct: 119 LTGAGDVLEPEHDVTAIGSGGNFALAAARGLMATDLPAEEIARKAMAIAADICVYTNGNL 178
Query: 79 LVERVRR 85
VER+ +
Sbjct: 179 TVERISK 185
>sp|A3PG34|HSLV_RHOS1 ATP-dependent protease subunit HslV OS=Rhodobacter sphaeroides
(strain ATCC 17029 / ATH 2.4.9) GN=hslV PE=3 SV=1
Length = 185
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 26 FSGGGGQDEP---STLEGTGGNLLLRGKQGSQTSDQPKEEY----IHVRARRGQATNSHS 78
+G G EP T G+GGN L +G +D P EE + + A TN +
Sbjct: 119 LTGAGDVLEPEHDVTAIGSGGNFALAAARGLMATDLPAEEIARKAMAIAADICVYTNGNL 178
Query: 79 LVERVRR 85
VER+ +
Sbjct: 179 TVERISK 185
>sp|A4WWS1|HSLV_RHOS5 ATP-dependent protease subunit HslV OS=Rhodobacter sphaeroides
(strain ATCC 17025 / ATH 2.4.3) GN=hslV PE=3 SV=1
Length = 185
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 26 FSGGGGQDEP---STLEGTGGNLLLRGKQGSQTSDQPKEEY----IHVRARRGQATNSHS 78
+G G EP T G+GGN L +G +D P EE + + A TN +
Sbjct: 119 ITGAGDVLEPEHDVTAIGSGGNFALAAARGLMATDLPAEEVARKAMAIAADICVYTNGNL 178
Query: 79 LVERVRR 85
VER+ +
Sbjct: 179 TVERISK 185
>sp|A0MLS5|BMAL1_HORSE Aryl hydrocarbon receptor nuclear translocator-like protein 1
OS=Equus caballus GN=ARNTL PE=2 SV=1
Length = 626
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 25 EFSGGGGQDEPSTLEGTGGNLLLRGKQGSQT---------SDQP--KEEYIHVRARRGQA 73
+F G D S+ GT G R ++GS T D P + EY + R A
Sbjct: 14 DFMSPGATDLLSSPLGTSGMDCNRKRKGSSTDYQESMDTDKDDPHGRLEYTEHQGRIKNA 73
Query: 74 TNSHSLVERVRREKISERMKFLQNL 98
+HS +E+ RR+K++ + L +L
Sbjct: 74 REAHSQIEKRRRDKMNSFIDELASL 98
>sp|Q9FHA2|ALC_ARATH Transcription factor ALC OS=Arabidopsis thaliana GN=ALC PE=2 SV=1
Length = 210
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 77 HSLVERVRREKISERMKFLQNL 98
H+L E+ RR KI+E+MK LQ L
Sbjct: 98 HNLSEKKRRSKINEKMKALQKL 119
>sp|Q8X711|MURB_ECO57 UDP-N-acetylenolpyruvoylglucosamine reductase OS=Escherichia coli
O157:H7 GN=murB PE=3 SV=1
Length = 342
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 38 LEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQN 97
LE G +++ +G + D+P Y+HV G N H LV + + E M L+N
Sbjct: 55 LEDYRGTVIINRIKGIEIHDEPDAWYLHV----GAGENWHRLV----KYTLQEGMPGLEN 106
Query: 98 LSL 100
L+L
Sbjct: 107 LAL 109
>sp|Q8FB88|MURB_ECOL6 UDP-N-acetylenolpyruvoylglucosamine reductase OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=murB PE=3
SV=1
Length = 342
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 38 LEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQN 97
LE G +++ +G + D+P Y+HV G N H LV + + E M L+N
Sbjct: 55 LEDYRGTVIINRIKGIEIHDEPDAWYLHV----GAGENWHRLV----KYTLQEGMPGLEN 106
Query: 98 LSL 100
L+L
Sbjct: 107 LAL 109
>sp|Q31U21|MURB_SHIBS UDP-N-acetylenolpyruvoylglucosamine reductase OS=Shigella boydii
serotype 4 (strain Sb227) GN=murB PE=3 SV=1
Length = 342
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 38 LEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQN 97
LE G +++ +G + D+P Y+HV G N H LV + + E M L+N
Sbjct: 55 LEDYRGTVIINRIKGIEIHDEPDAWYLHV----GAGENWHRLV----KYTLQEGMPGLEN 106
Query: 98 LSL 100
L+L
Sbjct: 107 LAL 109
>sp|Q9FJ00|BH086_ARATH Putative transcription factor bHLH086 OS=Arabidopsis thaliana
GN=BHLH86 PE=4 SV=2
Length = 307
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 78 SLVERVRREKISERMKFLQNL 98
SL + RRE+ISER+K LQ L
Sbjct: 213 SLAAKNRRERISERLKVLQEL 233
>sp|B7GG89|RS2_ANOFW 30S ribosomal protein S2 OS=Anoxybacillus flavithermus (strain DSM
21510 / WK1) GN=rpsB PE=3 SV=1
Length = 235
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 38 LEGTGGNLLLRGKQGSQTSDQPKEE-------YIHVRARRGQATNSHSLVERVRREKISE 90
L GG +L G + Q D KEE Y++ R G TN ++ +R++R K E
Sbjct: 60 LAADGGKILFVGTK-KQAQDSVKEEAERSGMFYVNQRWLGGTLTNFATIQKRIKRLKEIE 118
Query: 91 RM 92
RM
Sbjct: 119 RM 120
>sp|Q3YV08|MURB_SHISS UDP-N-acetylenolpyruvoylglucosamine reductase OS=Shigella sonnei
(strain Ss046) GN=murB PE=3 SV=1
Length = 342
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 38 LEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQN 97
LE G +++ +G + D+P Y+HV G N H LV + + E M L+N
Sbjct: 55 LEDYRGTVIINRIKGIEIHDEPDAWYLHV----GAGENWHRLV----KYTLQEGMPGLEN 106
Query: 98 LSL 100
L+L
Sbjct: 107 LAL 109
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.305 0.125 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,559,992
Number of Sequences: 539616
Number of extensions: 1614279
Number of successful extensions: 2996
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2938
Number of HSP's gapped (non-prelim): 94
length of query: 108
length of database: 191,569,459
effective HSP length: 76
effective length of query: 32
effective length of database: 150,558,643
effective search space: 4817876576
effective search space used: 4817876576
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 55 (25.8 bits)