Query 040760
Match_columns 108
No_of_seqs 144 out of 275
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 18:42:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.1 6.6E-11 2.2E-15 83.6 3.7 47 60-106 14-60 (118)
2 4h10_A ARYL hydrocarbon recept 98.9 1.5E-10 5.1E-15 76.7 -0.2 39 69-107 5-47 (73)
3 1a0a_A BHLH, protein (phosphat 98.8 1.6E-09 5.3E-14 69.6 1.6 32 75-106 4-35 (63)
4 1an4_A Protein (upstream stimu 98.7 1.9E-08 6.5E-13 63.4 5.0 31 73-103 5-35 (65)
5 1am9_A Srebp-1A, protein (ster 98.6 1.3E-08 4.4E-13 67.5 3.0 35 73-107 6-41 (82)
6 4h10_B Circadian locomoter out 98.5 3.2E-08 1.1E-12 65.6 2.8 34 74-107 9-43 (71)
7 4f3l_A Mclock, circadian locom 98.0 1.8E-06 6.1E-11 66.9 2.3 37 71-107 10-47 (361)
8 1nkp_A C-MYC, MYC proto-oncoge 98.0 2.9E-06 1E-10 57.1 2.3 33 75-107 8-43 (88)
9 3u5v_A Protein MAX, transcript 98.0 3E-06 1E-10 56.2 2.2 33 75-107 7-39 (76)
10 1nkp_B MAX protein, MYC proto- 97.9 4.2E-06 1.4E-10 54.8 2.3 33 75-107 4-38 (83)
11 1hlo_A Protein (transcription 97.9 5.9E-06 2E-10 54.0 2.6 33 75-107 14-48 (80)
12 4f3l_B BMAL1B; BHLH, PAS, circ 97.8 3.6E-06 1.2E-10 66.3 1.3 39 69-107 9-51 (387)
13 1nlw_A MAD protein, MAX dimeri 97.3 0.00019 6.5E-09 47.6 3.8 30 76-105 4-33 (80)
14 1mdy_A Protein (MYOD BHLH doma 94.9 0.022 7.4E-07 36.8 3.3 27 76-102 15-41 (68)
15 2ql2_B Neurod1, neurogenic dif 94.4 0.047 1.6E-06 34.3 3.9 27 77-103 6-32 (60)
16 1p3q_Q VPS9P, vacuolar protein 87.8 0.5 1.7E-05 29.8 3.2 27 78-104 2-28 (54)
17 2lfh_A DNA-binding protein inh 70.8 0.73 2.5E-05 30.3 -0.4 23 81-103 22-44 (68)
18 1otr_A Protein CUE2; protein-p 59.6 5.2 0.00018 24.3 2.0 18 88-105 4-21 (49)
19 4aya_A DNA-binding protein inh 41.5 31 0.001 23.7 3.8 22 82-103 34-55 (97)
20 2k6o_A Cathelicidin antimicrob 41.2 25 0.00087 20.8 2.9 21 82-102 7-35 (37)
21 2aze_A Transcription factor DP 39.6 17 0.00059 26.9 2.4 20 80-99 12-32 (155)
22 1lyp_A CAP18; lipopolysacchari 39.1 22 0.00076 20.3 2.3 17 84-100 9-29 (32)
23 2fcg_F Cationic, antibacterial 29.0 36 0.0012 18.8 2.0 16 87-102 7-23 (26)
24 2wl8_A Peroxisomal biogenesis 27.4 48 0.0016 23.5 3.0 17 82-98 88-104 (126)
25 2qxv_B EZH2, ENX-1, enhancer o 26.9 43 0.0015 18.2 2.1 14 85-98 8-21 (30)
26 1wgl_A TOLL-interacting protei 22.9 43 0.0015 20.6 1.8 16 89-104 10-25 (59)
27 4e17_B Catenin alpha-1; four h 22.4 59 0.002 19.4 2.3 16 84-99 13-32 (40)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.07 E-value=6.6e-11 Score=83.60 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=25.9
Q ss_pred cccccccccccccCCCcchHHHHHHHHHHHHHHHHHhhhccCCcccC
Q 040760 60 KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETG 106 (108)
Q Consensus 60 ~~~~i~~RakRg~At~~hSlaER~RRerInErmk~LQ~LVP~~~K~D 106 (108)
.....+..+++++...+|+++||+||++||++|..|+.|||+|.+.|
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~ 60 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPD 60 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 33445688999999999999999999999999999999999997644
No 2
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.89 E-value=1.5e-10 Score=76.68 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=34.1
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHhhhccCC----cccCC
Q 040760 69 RRGQATNSHSLVERVRREKISERMKFLQNLSLAI----EETGR 107 (108)
Q Consensus 69 kRg~At~~hSlaER~RRerInErmk~LQ~LVP~~----~K~Dk 107 (108)
++.+....|+++||+||++||+.|..|+.|||.| .|+||
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldK 47 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDK 47 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccH
Confidence 4455678999999999999999999999999998 47775
No 3
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=98.78 E-value=1.6e-09 Score=69.59 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=29.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCCcccC
Q 040760 75 NSHSLVERVRREKISERMKFLQNLSLAIEETG 106 (108)
Q Consensus 75 ~~hSlaER~RRerInErmk~LQ~LVP~~~K~D 106 (108)
.+|.+|||.||++||..|..|+.|||+|.+.|
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~ 35 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQ 35 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCccccc
Confidence 58999999999999999999999999997765
No 4
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=98.71 E-value=1.9e-08 Score=63.43 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=29.0
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhccCCc
Q 040760 73 ATNSHSLVERVRREKISERMKFLQNLSLAIE 103 (108)
Q Consensus 73 At~~hSlaER~RRerInErmk~LQ~LVP~~~ 103 (108)
....|+++||.||++||+.|..|+.|||+|.
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~ 35 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSS 35 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcc
Confidence 3568999999999999999999999999997
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=98.64 E-value=1.3e-08 Score=67.53 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHhhhccCC-cccCC
Q 040760 73 ATNSHSLVERVRREKISERMKFLQNLSLAI-EETGR 107 (108)
Q Consensus 73 At~~hSlaER~RRerInErmk~LQ~LVP~~-~K~Dk 107 (108)
...+|+++||+||++||++|..|+.|||++ .|+||
T Consensus 6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~K 41 (82)
T 1am9_A 6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNK 41 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCH
Confidence 346899999999999999999999999998 77775
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=98.55 E-value=3.2e-08 Score=65.57 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=30.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHhhhccCC-cccCC
Q 040760 74 TNSHSLVERVRREKISERMKFLQNLSLAI-EETGR 107 (108)
Q Consensus 74 t~~hSlaER~RRerInErmk~LQ~LVP~~-~K~Dk 107 (108)
-.+|+++||+||++||++|..|+.|||++ .|+||
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK 43 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDK 43 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCH
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcH
Confidence 35899999999999999999999999975 48876
No 7
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.02 E-value=1.8e-06 Score=66.92 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=26.4
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHhhhcc-CCcccCC
Q 040760 71 GQATNSHSLVERVRREKISERMKFLQNLSL-AIEETGR 107 (108)
Q Consensus 71 g~At~~hSlaER~RRerInErmk~LQ~LVP-~~~K~Dk 107 (108)
.....+|+++||+||++||+.|..|..||| +..|+||
T Consensus 10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk 47 (361)
T 4f3l_A 10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDK 47 (361)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCH
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCH
Confidence 344568999999999999999999999999 6678887
No 8
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.97 E-value=2.9e-06 Score=57.07 Aligned_cols=33 Identities=21% Similarity=0.415 Sum_probs=29.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCCc---ccCC
Q 040760 75 NSHSLVERVRREKISERMKFLQNLSLAIE---ETGR 107 (108)
Q Consensus 75 ~~hSlaER~RRerInErmk~LQ~LVP~~~---K~Dk 107 (108)
..|+++||.||+.||+.+..|+++||++. |++|
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK 43 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPK 43 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Confidence 36999999999999999999999999874 6664
No 9
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=97.96 E-value=3e-06 Score=56.20 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=28.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCCcccCC
Q 040760 75 NSHSLVERVRREKISERMKFLQNLSLAIEETGR 107 (108)
Q Consensus 75 ~~hSlaER~RRerInErmk~LQ~LVP~~~K~Dk 107 (108)
..|++.||.||..||+.+..|+.+||.|.+.||
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K 39 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDK 39 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccc
Confidence 468999999999999999999999998766655
No 10
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=97.92 E-value=4.2e-06 Score=54.77 Aligned_cols=33 Identities=27% Similarity=0.496 Sum_probs=29.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCC--cccCC
Q 040760 75 NSHSLVERVRREKISERMKFLQNLSLAI--EETGR 107 (108)
Q Consensus 75 ~~hSlaER~RRerInErmk~LQ~LVP~~--~K~Dk 107 (108)
..|+++||.||+.||+.+..|+.|||.+ .|++|
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK 38 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR 38 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Confidence 3699999999999999999999999986 55554
No 11
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=97.88 E-value=5.9e-06 Score=53.97 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=29.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHhhhccCCc--ccCC
Q 040760 75 NSHSLVERVRREKISERMKFLQNLSLAIE--ETGR 107 (108)
Q Consensus 75 ~~hSlaER~RRerInErmk~LQ~LVP~~~--K~Dk 107 (108)
..|+++||.||..||+.+..|+.|||.+. |.+|
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK 48 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR 48 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccH
Confidence 47999999999999999999999999873 5543
No 12
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=97.85 E-value=3.6e-06 Score=66.31 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=32.5
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHhhhcc----CCcccCC
Q 040760 69 RRGQATNSHSLVERVRREKISERMKFLQNLSL----AIEETGR 107 (108)
Q Consensus 69 kRg~At~~hSlaER~RRerInErmk~LQ~LVP----~~~K~Dk 107 (108)
|..++.++|+++||+||++||+.|..|..||| ...|.||
T Consensus 9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk 51 (387)
T 4f3l_B 9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDK 51 (387)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCH
T ss_pred hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCH
Confidence 33555789999999999999999999999999 4567776
No 13
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=97.33 E-value=0.00019 Score=47.59 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=27.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhccCCccc
Q 040760 76 SHSLVERVRREKISERMKFLQNLSLAIEET 105 (108)
Q Consensus 76 ~hSlaER~RRerInErmk~LQ~LVP~~~K~ 105 (108)
.|+..||.||..|+..+-.|.++||.+...
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~ 33 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDS 33 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 599999999999999999999999977443
No 14
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=94.90 E-value=0.022 Score=36.83 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhccCC
Q 040760 76 SHSLVERVRREKISERMKFLQNLSLAI 102 (108)
Q Consensus 76 ~hSlaER~RRerInErmk~LQ~LVP~~ 102 (108)
.|+.-||.|+..||+.+..|+++||..
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~ 41 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSN 41 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 388999999999999999999999975
No 15
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=94.44 E-value=0.047 Score=34.33 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHHHHHhhhccCCc
Q 040760 77 HSLVERVRREKISERMKFLQNLSLAIE 103 (108)
Q Consensus 77 hSlaER~RRerInErmk~LQ~LVP~~~ 103 (108)
|+.-||.|+..||+-+..|+.+||...
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~ 32 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYS 32 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 678899999999999999999999764
No 16
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=87.78 E-value=0.5 Score=29.76 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCcc
Q 040760 78 SLVERVRREKISERMKFLQNLSLAIEE 104 (108)
Q Consensus 78 SlaER~RRerInErmk~LQ~LVP~~~K 104 (108)
.+|+|++|..-.+-++.||.++|+-++
T Consensus 2 ~~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 2 SLIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 468999999999999999999999775
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=70.79 E-value=0.73 Score=30.30 Aligned_cols=23 Identities=9% Similarity=0.054 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhccCCc
Q 040760 81 ERVRREKISERMKFLQNLSLAIE 103 (108)
Q Consensus 81 ER~RRerInErmk~LQ~LVP~~~ 103 (108)
||.|...||+-+..|+.+||...
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p 44 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVP 44 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCC
Confidence 78888999999999999999864
No 18
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=59.57 E-value=5.2 Score=24.33 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhccCCccc
Q 040760 88 ISERMKFLQNLSLAIEET 105 (108)
Q Consensus 88 InErmk~LQ~LVP~~~K~ 105 (108)
..+.++.||+++|++++.
T Consensus 4 ~e~~v~~L~EMFP~~~~~ 21 (49)
T 1otr_A 4 HESKLSILMDMFPAISKS 21 (49)
T ss_dssp HHHHHHHHHHHCSSSCHH
T ss_pred hHHHHHHHHHHCCCCCHH
Confidence 357899999999999763
No 19
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=41.50 E-value=31 Score=23.74 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhccCCc
Q 040760 82 RVRREKISERMKFLQNLSLAIE 103 (108)
Q Consensus 82 R~RRerInErmk~LQ~LVP~~~ 103 (108)
|.|=..||+-+..|+.+||...
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p 55 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIP 55 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHHHHHHHHHHCCCCC
Confidence 4444559999999999999764
No 20
>2k6o_A Cathelicidin antimicrobial peptide; human HOST defense peptide, human cathelicidin, LL-37, bacterial membrane targeting, antibiotic; NMR {Homo sapiens} PDB: 2lmf_A
Probab=41.24 E-value=25 Score=20.77 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHH--------HHhhhccCC
Q 040760 82 RVRREKISERMK--------FLQNLSLAI 102 (108)
Q Consensus 82 R~RRerInErmk--------~LQ~LVP~~ 102 (108)
|..++||-+.++ .||.|+|-.
T Consensus 7 rk~geKig~~~kkIgQkIKdFf~~l~pr~ 35 (37)
T 2k6o_A 7 RKSKEKIGKEFKRIVQRIKDFLRNLVPRT 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 455666666655 578888864
No 21
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=39.58 E-value=17 Score=26.95 Aligned_cols=20 Identities=45% Similarity=0.556 Sum_probs=16.0
Q ss_pred HHH-HHHHHHHHHHHHHhhhc
Q 040760 80 VER-VRREKISERMKFLQNLS 99 (108)
Q Consensus 80 aER-~RRerInErmk~LQ~LV 99 (108)
+|| .|++||..+-..||+|+
T Consensus 12 ~Ek~~~~~rI~~K~~~LqeL~ 32 (155)
T 2aze_A 12 VERQRRLERIKQKQSQLQELI 32 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344 46788999999999886
No 22
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=39.14 E-value=22 Score=20.26 Aligned_cols=17 Identities=41% Similarity=0.475 Sum_probs=12.9
Q ss_pred HHHHHHHHHHH----Hhhhcc
Q 040760 84 RREKISERMKF----LQNLSL 100 (108)
Q Consensus 84 RRerInErmk~----LQ~LVP 100 (108)
=|.+|.|+++. +|.|+|
T Consensus 9 frnkikeklkkigqkiqgllp 29 (32)
T 1lyp_A 9 FRNKIKEKLKKIGQKIQGLLP 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 37789999985 577776
No 23
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=28.98 E-value=36 Score=18.75 Aligned_cols=16 Identities=44% Similarity=0.700 Sum_probs=11.3
Q ss_pred HHHHHHH-HHhhhccCC
Q 040760 87 KISERMK-FLQNLSLAI 102 (108)
Q Consensus 87 rInErmk-~LQ~LVP~~ 102 (108)
+|-+|+| .||+|+|-.
T Consensus 7 kIgQkIkdFf~~l~prt 23 (26)
T 2fcg_F 7 RIVQRIKDFLRNLVPRT 23 (26)
T ss_dssp HHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 4555554 689999965
No 24
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=27.43 E-value=48 Score=23.52 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhh
Q 040760 82 RVRREKISERMKFLQNL 98 (108)
Q Consensus 82 R~RRerInErmk~LQ~L 98 (108)
+.|+++|.+.|..||++
T Consensus 88 ~~~~~~i~~Lmq~mQ~~ 104 (126)
T 2wl8_A 88 KARFEMVLDLMQQLQDL 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 46889999999999986
No 25
>2qxv_B EZH2, ENX-1, enhancer of zeste homolog 2; WD-repeat domain, polycomb repressive complex 2, alternative splicing, DNA-binding, nucleus; 1.82A {Mus musculus}
Probab=26.92 E-value=43 Score=18.25 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHhhh
Q 040760 85 REKISERMKFLQNL 98 (108)
Q Consensus 85 RerInErmk~LQ~L 98 (108)
|.+|.|++..||+-
T Consensus 8 R~ki~e~~~~ln~~ 21 (30)
T 2qxv_B 8 RQKILERTETLNQE 21 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77899999999974
No 26
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=22.86 E-value=43 Score=20.57 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=13.4
Q ss_pred HHHHHHHhhhccCCcc
Q 040760 89 SERMKFLQNLSLAIEE 104 (108)
Q Consensus 89 nErmk~LQ~LVP~~~K 104 (108)
.+.+.+|++++|+-+.
T Consensus 10 ee~l~~L~emFP~ld~ 25 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQ 25 (59)
T ss_dssp HHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHHCCCCCH
Confidence 4778999999999764
No 27
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=22.40 E-value=59 Score=19.38 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=10.3
Q ss_pred HHHHHH----HHHHHHhhhc
Q 040760 84 RREKIS----ERMKFLQNLS 99 (108)
Q Consensus 84 RRerIn----Ermk~LQ~LV 99 (108)
||++|= .-=.+||+|+
T Consensus 13 rkerIv~eCnavrqALQdLl 32 (40)
T 4e17_B 13 RRERIVAECNAVRQALQDLL 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 677763 3345788886
Done!