Query 040761
Match_columns 215
No_of_seqs 135 out of 306
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 11:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 3.1E-50 6.7E-55 313.2 9.6 101 13-114 1-101 (101)
2 COG3416 Uncharacterized protei 82.6 3.8 8.2E-05 37.1 6.1 66 54-119 11-76 (233)
3 PRK10265 chaperone-modulator p 68.6 11 0.00023 29.2 4.6 33 87-119 67-99 (101)
4 PF09849 DUF2076: Uncharacteri 66.4 21 0.00045 32.4 6.5 62 55-116 12-73 (247)
5 PF07106 TBPIP: Tat binding pr 64.9 5.9 0.00013 32.6 2.6 80 40-119 20-107 (169)
6 PF11333 DUF3135: Protein of u 58.7 28 0.0006 26.7 5.1 65 39-107 16-82 (83)
7 PF09006 Surfac_D-trimer: Lung 58.5 23 0.00049 25.0 4.2 26 93-118 1-26 (46)
8 PF05308 Mito_fiss_reg: Mitoch 57.7 11 0.00024 34.1 3.3 23 97-119 121-143 (253)
9 PF12097 DUF3573: Protein of u 49.5 19 0.00042 34.7 3.5 22 92-113 43-64 (383)
10 PF06698 DUF1192: Protein of u 48.7 34 0.00073 25.0 4.0 26 93-118 23-48 (59)
11 PF13334 DUF4094: Domain of un 44.7 22 0.00047 27.8 2.6 22 91-112 73-94 (95)
12 PLN02523 galacturonosyltransfe 42.3 78 0.0017 32.2 6.6 54 57-115 145-200 (559)
13 cd04766 HTH_HspR Helix-Turn-He 41.9 49 0.0011 24.5 4.1 25 91-115 65-89 (91)
14 COG5509 Uncharacterized small 41.7 48 0.001 24.9 3.9 25 93-117 27-51 (65)
15 PF13591 MerR_2: MerR HTH fami 38.2 40 0.00087 25.1 3.1 24 89-112 61-84 (84)
16 cd01111 HTH_MerD Helix-Turn-He 37.9 97 0.0021 24.0 5.3 28 89-116 78-105 (107)
17 PF08158 NUC130_3NT: NUC130/3N 37.5 27 0.00059 24.6 2.0 37 30-76 5-45 (52)
18 PF06305 DUF1049: Protein of u 36.2 83 0.0018 21.7 4.3 24 93-116 43-66 (68)
19 KOG4552 Vitamin-D-receptor int 35.3 91 0.002 28.7 5.4 65 45-117 47-118 (272)
20 PF14282 FlxA: FlxA-like prote 33.7 70 0.0015 25.0 4.0 28 92-119 52-79 (106)
21 PF04706 Dickkopf_N: Dickkopf 32.7 27 0.00058 24.8 1.3 17 11-27 20-36 (52)
22 PF04977 DivIC: Septum formati 28.1 1E+02 0.0023 21.4 3.8 25 93-117 26-50 (80)
23 PF12325 TMF_TATA_bd: TATA ele 28.1 1.2E+02 0.0027 24.6 4.6 31 88-118 13-43 (120)
24 KOG1655 Protein involved in va 28.0 1.4E+02 0.0031 27.0 5.3 51 47-117 2-52 (218)
25 PHA02047 phage lambda Rz1-like 27.7 1.3E+02 0.0027 24.4 4.5 32 88-119 18-55 (101)
26 PLN02742 Probable galacturonos 27.1 2E+02 0.0044 29.1 6.8 47 64-114 131-177 (534)
27 PF15300 INT_SG_DDX_CT_C: INTS 26.5 63 0.0014 24.0 2.4 27 53-79 23-51 (65)
28 PRK10803 tol-pal system protei 25.9 1E+02 0.0022 27.6 4.1 28 91-118 54-81 (263)
29 TIGR02209 ftsL_broad cell divi 25.7 1.3E+02 0.0028 21.6 4.0 31 91-121 31-61 (85)
30 PF10883 DUF2681: Protein of u 25.6 1.3E+02 0.0027 23.6 4.1 27 93-119 32-58 (87)
31 PF06295 DUF1043: Protein of u 25.3 1.4E+02 0.0031 24.0 4.5 31 91-121 25-55 (128)
32 PF04977 DivIC: Septum formati 24.7 1.9E+02 0.0041 20.1 4.6 27 92-118 18-44 (80)
33 PRK02119 hypothetical protein; 24.4 2.6E+02 0.0056 20.7 5.4 28 91-118 30-57 (73)
34 PRK11677 hypothetical protein; 24.3 1.6E+02 0.0034 24.6 4.6 31 91-121 29-59 (134)
35 PF03242 LEA_3: Late embryogen 24.1 32 0.0007 27.0 0.6 20 75-94 58-77 (93)
36 PRK00888 ftsB cell division pr 24.0 1.2E+02 0.0026 23.8 3.7 21 92-112 28-48 (105)
37 PF06696 Strep_SA_rep: Strepto 23.5 1.9E+02 0.0042 17.9 3.8 22 96-117 3-24 (25)
38 PF04728 LPP: Lipoprotein leuc 23.4 1.6E+02 0.0034 21.4 4.0 22 93-114 12-33 (56)
39 PRK04406 hypothetical protein; 22.7 2.8E+02 0.0061 20.7 5.4 28 91-118 32-59 (75)
40 PRK00736 hypothetical protein; 22.3 3E+02 0.0065 20.0 5.3 27 91-117 26-52 (68)
41 PRK00295 hypothetical protein; 22.2 3.1E+02 0.0067 20.0 5.4 28 91-118 26-53 (68)
42 PF11336 DUF3138: Protein of u 22.0 1E+02 0.0023 30.9 3.7 30 90-119 24-53 (514)
43 PF11853 DUF3373: Protein of u 21.7 1.6E+02 0.0034 29.5 4.8 32 83-115 17-48 (489)
44 PRK00451 glycine dehydrogenase 21.1 79 0.0017 29.1 2.5 35 31-67 2-36 (447)
45 PF15397 DUF4618: Domain of un 20.7 1.4E+02 0.0031 27.4 4.1 57 54-118 52-108 (258)
46 PF04012 PspA_IM30: PspA/IM30 20.4 2.4E+02 0.0051 23.9 5.1 40 70-116 9-48 (221)
47 PF04102 SlyX: SlyX; InterPro 20.4 1.4E+02 0.0031 21.6 3.3 27 92-118 26-52 (69)
48 PF05120 GvpG: Gas vesicle pro 20.3 98 0.0021 23.7 2.5 33 85-117 8-40 (79)
49 PF08227 DASH_Hsk3: DASH compl 20.3 1.9E+02 0.0041 20.1 3.7 26 92-117 3-28 (45)
50 PF14282 FlxA: FlxA-like prote 20.1 1.2E+02 0.0027 23.6 3.1 23 90-112 18-40 (106)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=3.1e-50 Score=313.22 Aligned_cols=101 Identities=58% Similarity=1.035 Sum_probs=99.3
Q ss_pred CChhhhHhhhCCCCCCccCCCCCCCCchhHHHHHHHHhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHH
Q 040761 13 PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAH 92 (215)
Q Consensus 13 ~CAACK~lRRrC~~dCifAPYFPadq~~~rF~~vHKVFG~SNV~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~ 92 (215)
+|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++|+++|.+||+||+|||++|.+||||||+|+
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~ 79 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI 79 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence 79999999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040761 93 IFALQQQVACLQAQLMQVKAQL 114 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qL 114 (215)
|+.|+|||+++++||+.++++|
T Consensus 80 i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 80 ISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999876
No 2
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.64 E-value=3.8 Score=37.08 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=58.9
Q ss_pred hHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761 54 NVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 54 NV~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
|+..-|+......|+..++.||-||-++.-|--|=-+-.|..+++-|..++.||++++++|+....
T Consensus 11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~ 76 (233)
T COG3416 11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA 76 (233)
T ss_pred HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344456777788999999999999999999999999999999999999999999999999998776
No 3
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=68.55 E-value=11 Score=29.20 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=29.4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761 87 YGCVAHIFALQQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 87 yGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
+-.+++|..|-.||++++.|+..++++|..|..
T Consensus 67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346889999999999999999999999988863
No 4
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=66.41 E-value=21 Score=32.38 Aligned_cols=62 Identities=21% Similarity=0.212 Sum_probs=55.9
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 55 VSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 55 V~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
+..-|+.++...|+.-++.||-|+-.|.-|-+|=-+-.|...+.-|++++++|..++++|..
T Consensus 12 lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 12 LFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33457778878899999999999999999999999999999999999999999999999855
No 5
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.95 E-value=5.9 Score=32.60 Aligned_cols=80 Identities=21% Similarity=0.151 Sum_probs=53.3
Q ss_pred hhHHHHHHHHhchhhHHHHHhcCCcccH---HHHHHHHHHHHhhcccCCCCCc-----HHHHHHHHHHHHHHHHHHHHHH
Q 040761 40 PARFAAIHKVFGASNVSKLLLHVPVADR---CEAVVTIAYEAQARIRDPVYGC-----VAHIFALQQQVACLQAQLMQVK 111 (215)
Q Consensus 40 ~~rF~~vHKVFG~SNV~KmL~~lp~~~R---~dA~~SLvYEA~aR~rDPVyGC-----vG~I~~Lq~Qi~~lqaEL~~~k 111 (215)
..-|.|.|.-||-..|.|.|..|-...+ ...=.+.||=++--..+-+..- =.-|..|+.++..++.++..++
T Consensus 20 ~di~~nL~~~~~K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 20 QDIFDNLHNKVGKTAVQKALDSLVEEGKIVEKEYGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCeeeeeecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999999999999998866543 1222345555554433312211 2347777777788888888888
Q ss_pred HHHHhhhC
Q 040761 112 AQLAHNMM 119 (215)
Q Consensus 112 ~qLA~~~~ 119 (215)
++|+....
T Consensus 100 ~eL~~L~~ 107 (169)
T PF07106_consen 100 AELASLSS 107 (169)
T ss_pred HHHHHHhc
Confidence 88876653
No 6
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=58.67 E-value=28 Score=26.70 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=51.7
Q ss_pred chhHHHHHHHHhchhhHHHHHhcCCccc--HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHH
Q 040761 39 GPARFAAIHKVFGASNVSKLLLHVPVAD--RCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQL 107 (215)
Q Consensus 39 ~~~rF~~vHKVFG~SNV~KmL~~lp~~~--R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL 107 (215)
+|+.|....+ .-+-.++...|++. |..++.+-|==--.|.++|+.-|+-+..-+..++..+...|
T Consensus 16 dPe~fe~lr~----~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l~~~l 82 (83)
T PF11333_consen 16 DPEAFEQLRQ----ELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKLNDAL 82 (83)
T ss_pred CHHHHHHHHH----HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 4888877654 56677888998876 45567776666678899999999999999999998887665
No 7
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=58.50 E-value=23 Score=24.97 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
|..|.+|+..++.+|..++.-+..|.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yK 26 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYK 26 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999888775
No 8
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=57.74 E-value=11 Score=34.13 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhC
Q 040761 97 QQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 97 q~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
.++|..||.||+.+|+|||..+.
T Consensus 121 lqKIsALEdELs~LRaQIA~IV~ 143 (253)
T PF05308_consen 121 LQKISALEDELSRLRAQIAKIVA 143 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788899999999999998875
No 9
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=49.46 E-value=19 Score=34.75 Aligned_cols=22 Identities=41% Similarity=0.498 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040761 92 HIFALQQQVACLQAQLMQVKAQ 113 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~q 113 (215)
.|..||+||.+||+||..++++
T Consensus 43 ~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 43 EISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999999887
No 10
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=48.72 E-value=34 Score=24.97 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
|-.|+..|..|++|++.++++++.-.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999998887543
No 11
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=44.70 E-value=22 Score=27.81 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040761 91 AHIFALQQQVACLQAQLMQVKA 112 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~ 112 (215)
-.|..|...|..|+.||+.+|+
T Consensus 73 ~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 73 EAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3577888888888888888775
No 12
>PLN02523 galacturonosyltransferase
Probab=42.27 E-value=78 Score=32.20 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=43.3
Q ss_pred HHHhcCCcc--cHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 57 KLLLHVPVA--DRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLA 115 (215)
Q Consensus 57 KmL~~lp~~--~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA 115 (215)
..|++||++ +|..+|+.++++|.. +|-|..+|..|...|..+++++..++.|-+
T Consensus 145 ~~~~~~~~~~~~~~k~~~~~~~~a~~-----~~d~~~~~~kl~~~~~~~e~~~~~~~~q~~ 200 (559)
T PLN02523 145 DVLRQFEKEVKERVKVARQMIAESKE-----SFDNQLKIQKLKDTIFAVNEQLTKAKKNGA 200 (559)
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHHh-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677644 578899999999993 555778999999999999999998876533
No 13
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=41.92 E-value=49 Score=24.48 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLA 115 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA 115 (215)
..|..|..|+..+++||+.++++|-
T Consensus 65 ~~~l~l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 65 KRILELEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444599999999999999998874
No 14
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=41.74 E-value=48 Score=24.86 Aligned_cols=25 Identities=36% Similarity=0.583 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
|-.|.+.|..||+|++.++++++.-
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4467788888888888888888754
No 15
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=38.21 E-value=40 Score=25.08 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 89 CVAHIFALQQQVACLQAQLMQVKA 112 (215)
Q Consensus 89 CvG~I~~Lq~Qi~~lqaEL~~~k~ 112 (215)
.+++|.+|..+|..++.||..+++
T Consensus 61 gi~lil~LLd~i~~L~~el~~L~~ 84 (84)
T PF13591_consen 61 GIALILDLLDRIEQLRRELRELRR 84 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC
Confidence 478899999999999999988763
No 16
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=37.86 E-value=97 Score=24.03 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 89 CVAHIFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 89 CvG~I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
|...+..+..+|+..+++|..++++|..
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~ 105 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAE 105 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888999999999999999998874
No 17
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=37.53 E-value=27 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=27.5
Q ss_pred cCCCCCCCCchhHHHHHHHHhchhhHHHHHh----cCCcccHHHHHHHHHH
Q 040761 30 FAPYFCSEQGPARFAAIHKVFGASNVSKLLL----HVPVADRCEAVVTIAY 76 (215)
Q Consensus 30 fAPYFPadq~~~rF~~vHKVFG~SNV~KmL~----~lp~~~R~dA~~SLvY 76 (215)
.++|||.+ .+.| ..-+..+|+ .|+++.|...+.||+-
T Consensus 5 va~cYp~~--~~~F--------p~~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 5 VAHCYPKE--TKDF--------PQELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred cccccHHH--HHHH--------HHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 57888864 5667 334566666 6789999999999874
No 18
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.18 E-value=83 Score=21.72 Aligned_cols=24 Identities=17% Similarity=0.393 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
.+.+.+++..++.+++.++++++.
T Consensus 43 ~~~~r~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 43 RLRLRRRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466788888999999999888874
No 19
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=35.34 E-value=91 Score=28.70 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=42.5
Q ss_pred HHHHHhchh--hHHHHHhcCCc-ccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHhh
Q 040761 45 AIHKVFGAS--NVSKLLLHVPV-ADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQV----KAQLAHN 117 (215)
Q Consensus 45 ~vHKVFG~S--NV~KmL~~lp~-~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~----k~qLA~~ 117 (215)
++-++|-.. -+.+||+-+++ .+|+.+|++|--+.+.|. ..|.+||.++...+.-|+.+ +++|+..
T Consensus 47 ~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD--------~~IQqLqk~LK~aE~iLtta~fqA~qKLksi 118 (272)
T KOG4552|consen 47 NILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRD--------EVIQQLQKNLKSAEVILTTACFQANQKLKSI 118 (272)
T ss_pred HHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444432 35566666664 458899999855555554 36999999999887776643 5666544
No 20
>PF14282 FlxA: FlxA-like protein
Probab=33.74 E-value=70 Score=25.01 Aligned_cols=28 Identities=39% Similarity=0.414 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
.+..|+.||..|+++|+.++.+.+.-..
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~q~~~~~~ 79 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQSQQAEQQQ 79 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888877775543
No 21
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=32.67 E-value=27 Score=24.76 Aligned_cols=17 Identities=35% Similarity=0.854 Sum_probs=15.3
Q ss_pred CCCChhhhHhhhCCCCC
Q 040761 11 GSPCGACKFLRRKCASD 27 (215)
Q Consensus 11 ~~~CAACK~lRRrC~~d 27 (215)
.+.|..||-+|++|..|
T Consensus 20 ~~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 20 ESKCLPCRKRRKRCTRD 36 (52)
T ss_pred CccChhhccCCCCCCCC
Confidence 38999999999999976
No 22
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=28.09 E-value=1e+02 Score=21.44 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
|..|+.++..++.+...++.++...
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555555555555544
No 23
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=28.09 E-value=1.2e+02 Score=24.61 Aligned_cols=31 Identities=26% Similarity=0.275 Sum_probs=24.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 88 GCVAHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 88 GCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
..+.+|..|+.+|.++..|+..++.+|+...
T Consensus 13 ~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~ 43 (120)
T PF12325_consen 13 PSVQLVERLQSQLRRLEGELASLQEELARLE 43 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888888887654
No 24
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.03 E-value=1.4e+02 Score=27.02 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=34.8
Q ss_pred HHHhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 47 HKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 47 HKVFG~SNV~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
||+||..+- ..|+..=.++..++=- | --.+..+|..|.+||.+.+.||+..
T Consensus 2 nRiFG~~k~-----k~p~psL~dai~~v~~----r-----------~dSve~KIskLDaeL~k~~~Qi~k~ 52 (218)
T KOG1655|consen 2 NRIFGRGKP-----KEPPPSLQDAIDSVNK----R-----------SDSVEKKISKLDAELCKYKDQIKKT 52 (218)
T ss_pred cccccCCCC-----CCCChhHHHHHHHHHH----h-----------hhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 789998872 3455555556665532 2 1356788888888888888888865
No 25
>PHA02047 phage lambda Rz1-like protein
Probab=27.70 E-value=1.3e+02 Score=24.44 Aligned_cols=32 Identities=9% Similarity=0.093 Sum_probs=20.6
Q ss_pred CcHHHHHHH------HHHHHHHHHHHHHHHHHHHhhhC
Q 040761 88 GCVAHIFAL------QQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 88 GCvG~I~~L------q~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
|.+|.+... +..++++.++|..++.++..|+.
T Consensus 18 ~~y~~~~~~r~~g~~h~~a~~la~qLE~a~~r~~~~Q~ 55 (101)
T PHA02047 18 ASYGFVQSYRALGIAHEEAKRQTARLEALEVRYATLQR 55 (101)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665533 33667777777777777777664
No 26
>PLN02742 Probable galacturonosyltransferase
Probab=27.06 E-value=2e+02 Score=29.12 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=38.8
Q ss_pred cccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 64 VADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQL 114 (215)
Q Consensus 64 ~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qL 114 (215)
..++..+|+.++++|..-. |.|..++..|...|..+++|+...+.|-
T Consensus 131 ~~~~~~~m~~~i~~ak~~~----~d~~~~~~klr~~l~~~e~~~~~~~~q~ 177 (534)
T PLN02742 131 AEPIIRDLAALIYQAQDLH----YDSATTIMTLKAHIQALEERANAATVQS 177 (534)
T ss_pred HHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999887544 5599999999999999999999887553
No 27
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=26.46 E-value=63 Score=23.96 Aligned_cols=27 Identities=37% Similarity=0.370 Sum_probs=23.8
Q ss_pred hhHHHHHhcC--CcccHHHHHHHHHHHHh
Q 040761 53 SNVSKLLLHV--PVADRCEAVVTIAYEAQ 79 (215)
Q Consensus 53 SNV~KmL~~l--p~~~R~dA~~SLvYEA~ 79 (215)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688899988 78899999999999995
No 28
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.86 E-value=1e+02 Score=27.62 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
..+..|++||+.++.|+..++-++....
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~ 81 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQ 81 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3567899999999999999987776543
No 29
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=25.74 E-value=1.3e+02 Score=21.61 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNMMDT 121 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~~~ 121 (215)
.-+..++.++.++++|-..++.+++....|.
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~ 61 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELSRHE 61 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 4466777777777777777777777665543
No 30
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=25.62 E-value=1.3e+02 Score=23.57 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
+..|+.+.++++.|.+.+++++..|..
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888888888888877654
No 31
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.28 E-value=1.4e+02 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNMMDT 121 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~~~ 121 (215)
.....|+++|.+++.||+.-|+++..|-..+
T Consensus 25 ~~q~~l~~eL~~~k~el~~yk~~V~~HF~~t 55 (128)
T PF06295_consen 25 QKQAKLEQELEQAKQELEQYKQEVNDHFAQT 55 (128)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888877765543
No 32
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.66 E-value=1.9e+02 Score=20.09 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
.+..+++++..++.+++.++++.....
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~ 44 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888877666543
No 33
>PRK02119 hypothetical protein; Provisional
Probab=24.45 E-value=2.6e+02 Score=20.71 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
.+|..-+++|..++.+|..+..+|....
T Consensus 30 ~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 30 QALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566778888888888888888887543
No 34
>PRK11677 hypothetical protein; Provisional
Probab=24.30 E-value=1.6e+02 Score=24.57 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNMMDT 121 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~~~ 121 (215)
.....|+.+|++.+.||..-|++++.|-..+
T Consensus 29 ~~q~~le~eLe~~k~ele~YkqeV~~HFa~T 59 (134)
T PRK11677 29 RQQQALQYELEKNKAELEEYRQELVSHFARS 59 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888888888776654
No 35
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=24.15 E-value=32 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.0
Q ss_pred HHHHhhcccCCCCCcHHHHH
Q 040761 75 AYEAQARIRDPVYGCVAHIF 94 (215)
Q Consensus 75 vYEA~aR~rDPVyGCvG~I~ 94 (215)
-.|-..|..|||-|++--..
T Consensus 58 ~~~~~~W~pDPvTGyyrPen 77 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYRPEN 77 (93)
T ss_pred cccccccccCCCCccccCCC
Confidence 56678999999999986544
No 36
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=24.04 E-value=1.2e+02 Score=23.83 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040761 92 HIFALQQQVACLQAQLMQVKA 112 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~ 112 (215)
.+..+++++..+++|++.+++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~ 48 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKA 48 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554443
No 37
>PF06696 Strep_SA_rep: Streptococcal surface antigen repeat; InterPro: IPR009578 This family consists of a number of ~25 residue long repeats found commonly in Streptococcal surface antigens although one copy is present in the HPSR2-heavy chain potential motor protein of Giardia lamblia (Giardia intestinalis) (Q24984 from SWISSPROT). This family is often found in conjunction with IPR001899 from INTERPRO.; PDB: 3IOX_A 3IPK_A 2WD6_B 1JMM_A.
Probab=23.53 E-value=1.9e+02 Score=17.90 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 040761 96 LQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 96 Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
.+-.+.+-++||+.++..++.+
T Consensus 3 Yqakla~YqaeLa~vqk~na~~ 24 (25)
T PF06696_consen 3 YQAKLAQYQAELARVQKANADY 24 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 4667888899999999888754
No 38
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.38 E-value=1.6e+02 Score=21.43 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040761 93 IFALQQQVACLQAQLMQVKAQL 114 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qL 114 (215)
|..|..+|.+|..++..++..+
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655555444
No 39
>PRK04406 hypothetical protein; Provisional
Probab=22.68 E-value=2.8e+02 Score=20.69 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
.+|..-+++|..++.+|..+..+|....
T Consensus 32 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 32 DALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567778888888888888888886543
No 40
>PRK00736 hypothetical protein; Provisional
Probab=22.26 E-value=3e+02 Score=20.05 Aligned_cols=27 Identities=7% Similarity=0.086 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
.+|..-+++|..++.+|..+..+|...
T Consensus 26 ~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 26 DQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667778888888888888777754
No 41
>PRK00295 hypothetical protein; Provisional
Probab=22.20 E-value=3.1e+02 Score=19.98 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
.+|...+++|..++.+|..+..+|....
T Consensus 26 ~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 26 DVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567778888888888888888887543
No 42
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=22.00 E-value=1e+02 Score=30.88 Aligned_cols=30 Identities=37% Similarity=0.418 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
.-.|..|+.||..||.|+..++++|+.-..
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~~ 53 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKPA 53 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999999999999986544
No 43
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.74 E-value=1.6e+02 Score=29.55 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=22.5
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 83 RDPVYGCVAHIFALQQQVACLQAQLMQVKAQLA 115 (215)
Q Consensus 83 rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA 115 (215)
-.|.....--+..+| ||++|+.||+.+|+|+.
T Consensus 17 s~~~~a~~~~~~~~q-kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 17 SLPAAAMADDIDLLQ-KIEALKKQLEELKAQQD 48 (489)
T ss_pred ccchhhhhhhhHHHH-HHHHHHHHHHHHHHhhc
Confidence 344444445555566 99999999999988866
No 44
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=21.09 E-value=79 Score=29.11 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=27.2
Q ss_pred CCCCCCCCchhHHHHHHHHhchhhHHHHHhcCCcccH
Q 040761 31 APYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADR 67 (215)
Q Consensus 31 APYFPadq~~~rF~~vHKVFG~SNV~KmL~~lp~~~R 67 (215)
-||.|.+ ++.-...-+.||.++|-.+...+|...|
T Consensus 2 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT--EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC--HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899986 5777888899999999777776665443
No 45
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.72 E-value=1.4e+02 Score=27.40 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=38.3
Q ss_pred hHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 54 NVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 54 NV~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
+++.+|......+..+ +++=+-|..-+. --.++.|++|+.++.+.|..++.+|....
T Consensus 52 ~~i~~le~~~~~~l~~-ak~eLqe~eek~-------e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 52 TAIDILEYSNHKQLQQ-AKAELQEWEEKE-------ESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHccChHHHHH-HHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666555444443 344344444443 34689999999999999999999987544
No 46
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=20.45 E-value=2.4e+02 Score=23.89 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 70 AVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 70 A~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
++.+-+-++--++.||. ..|.+.|..++.+|..++..++.
T Consensus 9 ~~~a~~~~~ld~~EDP~-------~~l~q~ird~e~~l~~a~~~~a~ 48 (221)
T PF04012_consen 9 LVKANINELLDKAEDPE-------KMLEQAIRDMEEQLRKARQALAR 48 (221)
T ss_pred HHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554 34444555555555555444443
No 47
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=20.39 E-value=1.4e+02 Score=21.57 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
+|..-+.+|..++.+|..+..+|....
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777888888887777777654
No 48
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=20.29 E-value=98 Score=23.67 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=17.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 85 PVYGCVAHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 85 PVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
||.|.+-+.-.++.+...---+-+.++++|+..
T Consensus 8 Pvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L 40 (79)
T PF05120_consen 8 PVRGVVWVAEQIQEQAERELYDPAAIRRELAEL 40 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 555555555555555443333345666666643
No 49
>PF08227 DASH_Hsk3: DASH complex subunit Hsk3 like; InterPro: IPR013183 This is a family of fungal proteins of unknown function.
Probab=20.28 E-value=1.9e+02 Score=20.09 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
.+..|..|+.+|++-|+.+.++|..-
T Consensus 3 q~s~L~~qL~qL~aNL~~t~~~l~~~ 28 (45)
T PF08227_consen 3 QYSHLASQLAQLQANLADTENLLEMT 28 (45)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46788889999999998888888643
No 50
>PF14282 FlxA: FlxA-like protein
Probab=20.10 E-value=1.2e+02 Score=23.60 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040761 90 VAHIFALQQQVACLQAQLMQVKA 112 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~ 112 (215)
...|..|+.||..|+.+|..+..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666666666666655443
Done!