Query 040761
Match_columns 215
No_of_seqs 135 out of 306
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 18:43:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 73.1 4.7 0.00016 25.4 3.8 27 91-117 2-28 (33)
2 2er8_A Regulatory protein Leu3 59.9 16 0.00055 24.5 4.8 17 11-27 3-19 (72)
3 1zme_C Proline utilization tra 49.2 17 0.00058 24.1 3.5 26 90-115 43-68 (70)
4 4e61_A Protein BIM1; EB1-like 46.8 27 0.00092 27.2 4.6 31 88-118 1-31 (106)
5 1am9_A Srebp-1A, protein (ster 42.7 36 0.0012 24.3 4.5 29 90-118 49-77 (82)
6 3dcg_E Virion infectivity fact 40.4 14 0.00049 24.3 1.9 13 201-213 4-16 (39)
7 2yy0_A C-MYC-binding protein; 38.2 34 0.0012 23.1 3.6 24 93-116 28-51 (53)
8 3r4h_A Coiled coil helix CC-TE 38.0 47 0.0016 20.9 3.9 28 91-118 2-29 (34)
9 2zvf_A Alanyl-tRNA synthetase; 37.8 1.2E+02 0.0041 23.3 7.2 47 72-118 13-59 (171)
10 2xdj_A Uncharacterized protein 34.7 50 0.0017 24.3 4.2 25 92-116 21-45 (83)
11 1hlo_A Protein (transcription 34.5 36 0.0012 24.0 3.4 24 90-113 56-79 (80)
12 2l5g_B Putative uncharacterize 33.0 56 0.0019 21.7 3.9 24 95-118 6-29 (42)
13 1nkp_B MAX protein, MYC proto- 32.5 62 0.0021 22.8 4.4 27 90-116 46-72 (83)
14 3myf_A Sensor protein; HPT, hi 32.0 1.3E+02 0.0046 22.3 6.4 65 41-113 51-115 (119)
15 3nmd_A CGMP dependent protein 30.7 88 0.003 22.7 4.9 29 91-119 40-68 (72)
16 3ra3_B P2F; coiled coil domain 28.0 67 0.0023 19.4 3.2 25 93-117 2-26 (28)
17 1zxa_A CGMP-dependent protein 24.7 1E+02 0.0035 22.0 4.3 28 92-119 26-53 (67)
18 1ic2_A Tropomyosin alpha chain 24.5 96 0.0033 21.9 4.2 48 66-117 20-67 (81)
19 1dh3_A Transcription factor CR 24.5 1.1E+02 0.0039 20.4 4.4 28 91-118 22-49 (55)
20 3pbf_A Pulmonary surfactant-as 23.9 57 0.002 23.8 3.0 24 92-115 3-26 (148)
21 2pbi_A Regulator of G-protein 23.2 49 0.0017 30.6 3.0 68 41-108 144-236 (424)
22 1uuj_A Platelet-activating fac 21.8 38 0.0013 25.4 1.6 24 93-116 60-83 (88)
23 3u1c_A Tropomyosin alpha-1 cha 21.3 1E+02 0.0035 22.8 4.0 28 90-117 43-70 (101)
24 2dgc_A Protein (GCN4); basic d 21.3 1.5E+02 0.0051 20.4 4.5 27 91-117 30-56 (63)
25 1gk6_A Vimentin; intermediate 21.1 1.1E+02 0.0039 20.6 3.9 22 95-116 4-25 (59)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=73.07 E-value=4.7 Score=25.35 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
|.|..|.++|..++.|++.++-+++..
T Consensus 2 geiaalkqeiaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 2 GEIAALKQEIAALKKEIAALKFEIAAL 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999888864
No 2
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=59.89 E-value=16 Score=24.48 Aligned_cols=17 Identities=24% Similarity=0.647 Sum_probs=12.9
Q ss_pred CCCChhhhHhhhCCCCC
Q 040761 11 GSPCGACKFLRRKCASD 27 (215)
Q Consensus 11 ~~~CAACK~lRRrC~~d 27 (215)
..+|..|+..+-||...
T Consensus 3 ~~AC~~Cr~rK~kCd~~ 19 (72)
T 2er8_A 3 KFACVECRQQKSKCDAH 19 (72)
T ss_dssp CCCCHHHHHTTCCCCSG
T ss_pred CchhHHHHhcccCCCCC
Confidence 46788888887788753
No 3
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=49.23 E-value=17 Score=24.09 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQLA 115 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~qLA 115 (215)
-+.|..|+.+|..|+.+|..++..|+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688899999999999999988775
No 4
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=46.78 E-value=27 Score=27.16 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=25.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 88 GCVAHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 88 GCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
|..|.+..++.++.+.++++..+++++....
T Consensus 1 ~~~~s~~al~~eL~~~~~ei~~L~~ei~eLk 31 (106)
T 4e61_A 1 GPLGSLVAIQAELTKSQETIGSLNEEIEQYK 31 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999999998888888877654
No 5
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=42.67 E-value=36 Score=24.34 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
+-.|..|+.++..++.|+..++.++....
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57799999999999999999998887543
No 6
>3dcg_E Virion infectivity factor; HIV, VIF, AIDS, HOST-virus interaction, membrane, phosphoPro RNA-binding, UBL conjugation pathway; 2.40A {Human immunodeficiency virus type 1}
Probab=40.42 E-value=14 Score=24.25 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=11.0
Q ss_pred ChhHHHHHHHHHh
Q 040761 201 DLGELQALALRMM 213 (215)
Q Consensus 201 ~~~~lq~la~~m~ 213 (215)
..|.|||||++-+
T Consensus 4 kVGsLQyLAL~al 16 (39)
T 3dcg_E 4 KVGSLQYLALAAL 16 (39)
T ss_pred chhHHHHHHHHHH
Confidence 6899999999753
No 7
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.23 E-value=34 Score=23.14 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
+..|+.++..|++++..++++|..
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555566655553
No 8
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=37.99 E-value=47 Score=20.88 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
|.+..+.+++...+.||+.++-+|+...
T Consensus 2 gelaaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 2 GELAAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888654
No 9
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=37.83 E-value=1.2e+02 Score=23.29 Aligned_cols=47 Identities=11% Similarity=0.020 Sum_probs=34.1
Q ss_pred HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 72 VTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 72 ~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
..++.+....+.-|..--...|..|+.++..++.|+..++.+++.+.
T Consensus 13 ~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~ 59 (171)
T 2zvf_A 13 ERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLW 59 (171)
T ss_dssp HHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555557777888888888888888888888887664
No 10
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=34.68 E-value=50 Score=24.25 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
.+..|++||..++.|++.++.++..
T Consensus 21 ~~~~Lq~Ql~~Lq~Ev~~LRGqiE~ 45 (83)
T 2xdj_A 21 LLTQLQQQLSDNQSDIDSLRGQIQE 45 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4677888888888888877766653
No 11
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=34.49 E-value=36 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQ 113 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~q 113 (215)
+-.|..|+.++..++.++..++.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566888888888888888877654
No 12
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=33.05 E-value=56 Score=21.70 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 95 ALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 95 ~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
.|-++|..+-.|+++++++|+.+.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lq 29 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLK 29 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778888888888887777654
No 13
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.49 E-value=62 Score=22.77 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
+-.|..|+.++..++.|+..++.+...
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~ 72 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNAL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888888877777777777665543
No 14
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=31.99 E-value=1.3e+02 Score=22.28 Aligned_cols=65 Identities=22% Similarity=0.275 Sum_probs=41.8
Q ss_pred hHHHHHHHHhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 41 ARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQ 113 (215)
Q Consensus 41 ~rF~~vHKVFG~SNV~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~q 113 (215)
.-+..+||+-|++..+..-+ -...+-..|...|..+|+-..-..+..|..+|..+..++....++
T Consensus 51 ~l~~~aHkLkGaa~~~Ga~~--------L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~ 115 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGVPT--------TQRLCQEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQ 115 (119)
T ss_dssp HHHHHHHHHHHHHTTTTCHH--------HHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHH--------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556888888776543211 112233457777888887777777888888887777766665554
No 15
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=30.66 E-value=88 Score=22.73 Aligned_cols=29 Identities=14% Similarity=0.087 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
..|..|+.+|.+..+++..++.+|-.|..
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999999999999999999987753
No 16
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=27.98 E-value=67 Score=19.43 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
|..|.++...++.|++.+.-++|..
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 5678888889999999888888753
No 17
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.71 E-value=1e+02 Score=22.03 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLAHNMM 119 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~ 119 (215)
.|..|+..+....+++..++.+|-.|..
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999998865
No 18
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.51 E-value=96 Score=21.94 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=30.6
Q ss_pred cHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 66 DRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 66 ~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
.|.+.+..-+=+++.|.. -.-.-|..|+..|..++.+|..+...|...
T Consensus 20 ~~~~~~e~~l~~~e~~~~----~~E~ev~~L~kKiq~lE~eld~~ee~l~~a 67 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSK----QLEDELVALQKKLKGTEDELDKYSESLKDA 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554431 123557788888888888888887777643
No 19
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.46 E-value=1.1e+02 Score=20.40 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
..|..|+.++..|+.|...++.++....
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888887554
No 20
>3pbf_A Pulmonary surfactant-associated protein A; collectin, carbohydrate binding, lectin, mannose, sugar BIND protein; 1.80A {Rattus norvegicus} PDB: 1r14_A* 1r13_A* 3paq_A* 3par_A 3pak_A
Probab=23.91 E-value=57 Score=23.79 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLA 115 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA 115 (215)
++..|++++..++.+|..++..|.
T Consensus 3 ~~e~l~~~~~~l~~~l~~~~~~~~ 26 (148)
T 3pbf_A 3 LDEELQTELYEIKHQILQTMGVLS 26 (148)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999998884
No 21
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=23.25 E-value=49 Score=30.59 Aligned_cols=68 Identities=12% Similarity=0.104 Sum_probs=48.7
Q ss_pred hHHHHHHHHhchhhHHHHHh---cCCcccHHHHHHHHHHHHh----hcccCCCCCcHHH------------------HHH
Q 040761 41 ARFAAIHKVFGASNVSKLLL---HVPVADRCEAVVTIAYEAQ----ARIRDPVYGCVAH------------------IFA 95 (215)
Q Consensus 41 ~rF~~vHKVFG~SNV~KmL~---~lp~~~R~dA~~SLvYEA~----aR~rDPVyGCvG~------------------I~~ 95 (215)
+.+..+||.|...+-.=+++ ++.+.++.+-.+-+|++.+ +++.-|+.||+-+ +..
T Consensus 144 e~~~~l~~~~~~~w~~i~~qa~~q~~~~k~r~k~~r~v~~~qe~a~w~vhrp~pg~~~~~e~~~~~~~~~~~~~~~~~~~ 223 (424)
T 2pbi_A 144 ENYDFLNKKINYKWDFVIMQAKEQYRTGKERNKADRYALDCQEKAYWLVHRSPPGMNNVLDYGLDRVTNPNEVKKQTVTA 223 (424)
T ss_dssp HHHHHHHHHTGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHSCCTTSCCTTCCCSCBSSCTTCCCCCCHHH
T ss_pred HHHhhhhhhhcCchHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhCCCCCCccccccccccccCccccccccHHH
Confidence 56778888887776666655 4445555666677777766 7889999998744 466
Q ss_pred HHHHHHHHHHHHH
Q 040761 96 LQQQVACLQAQLM 108 (215)
Q Consensus 96 Lq~Qi~~lqaEL~ 108 (215)
++.+|++++.+|.
T Consensus 224 ~r~~veqLk~~l~ 236 (424)
T 2pbi_A 224 VRKEIMYYQQALM 236 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 7888888887773
No 22
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=21.82 E-value=38 Score=25.42 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 93 IFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 93 I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
|-.||.+|.+|++++..++++|..
T Consensus 60 ViRLQKKImdLE~~~~~l~~el~~ 83 (88)
T 1uuj_A 60 VIRLQKKVMELESKLNEAKEEFTS 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999874
No 23
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.33 E-value=1e+02 Score=22.84 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
=.-|..|+.+|..++.+|..++..|...
T Consensus 43 E~Ei~sL~kk~~~lE~eld~~ee~L~ea 70 (101)
T 3u1c_A 43 EDDIVQLEKQLRVTEDSRDQVLEELHKS 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899988888888888877643
No 24
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=21.31 E-value=1.5e+02 Score=20.37 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 91 AHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 91 G~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
..+..|+.++..|+.+...++.+++..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888887777777654
No 25
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=21.10 E-value=1.1e+02 Score=20.60 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 040761 95 ALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 95 ~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
.++..|..++++|..++++++.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~ 25 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVAR 25 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555443
Done!