Query 040761
Match_columns 215
No_of_seqs 135 out of 306
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 18:43:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040761.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040761hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hcia4 a.7.1.1 (A:633-746) al 56.6 7.5 0.00055 26.3 4.6 51 68-118 14-64 (114)
2 d1uklc_ a.38.1.1 (C:) SREBP-2 49.9 9.9 0.00072 24.2 4.0 27 90-116 32-58 (61)
3 d1nkpa_ a.38.1.1 (A:) Myc prot 35.5 51 0.0037 21.6 6.2 27 90-116 51-77 (88)
4 d1am9a_ a.38.1.1 (A:) SREBP-1a 29.0 38 0.0028 22.1 4.5 29 89-117 48-76 (80)
5 d1pyia1 g.38.1.1 (A:30-71) PPR 24.0 21 0.0015 21.2 2.1 17 11-27 2-18 (42)
6 d3coqa1 g.38.1.1 (A:8-48) Gal4 23.2 19 0.0014 21.1 1.8 15 12-26 2-16 (41)
7 d1st6a4 a.24.9.1 (A:372-488) V 21.3 76 0.0055 23.0 5.2 24 69-92 11-34 (117)
8 d1zmec1 g.38.1.1 (C:31-66) PUT 19.8 26 0.0019 20.3 1.9 15 12-26 2-16 (36)
9 d1clda_ g.38.1.1 (A:) CD2-Lac9 19.3 23 0.0017 20.0 1.5 16 12-27 1-16 (33)
10 d1fxkc_ a.2.5.1 (C:) Prefoldin 16.5 95 0.0069 21.2 4.7 27 92-118 9-35 (133)
No 1
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.59 E-value=7.5 Score=26.29 Aligned_cols=51 Identities=8% Similarity=0.037 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 68 CEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 68 ~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
.+-+.+=+-|+..-+.+|++|-.+.|..+..+...++.+|..-+..+....
T Consensus 14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l~ 64 (114)
T d1hcia4 14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKLE 64 (114)
T ss_dssp HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888999999999999999999999999999988887654
No 2
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.86 E-value=9.9 Score=24.20 Aligned_cols=27 Identities=26% Similarity=0.113 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
+-.|..|+.++..+++|+..++.+...
T Consensus 32 i~YI~~Lq~~~~~L~~e~~~L~~~~~~ 58 (61)
T d1uklc_ 32 IDYIKYLQQVNHKLRQENMVLKLANQK 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999888764
No 3
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.55 E-value=51 Score=21.65 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040761 90 VAHIFALQQQVACLQAQLMQVKAQLAH 116 (215)
Q Consensus 90 vG~I~~Lq~Qi~~lqaEL~~~k~qLA~ 116 (215)
+..|..|+.++..+..++..++.+...
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~ 77 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQ 77 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778888888877777777666543
No 4
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.04 E-value=38 Score=22.11 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040761 89 CVAHIFALQQQVACLQAQLMQVKAQLAHN 117 (215)
Q Consensus 89 CvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~ 117 (215)
.+-.|..|+.++..+..|...++..+...
T Consensus 48 a~~yI~~L~~~~~~L~~e~~~lk~~~~~~ 76 (80)
T d1am9a_ 48 AIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999888877653
No 5
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.03 E-value=21 Score=21.20 Aligned_cols=17 Identities=24% Similarity=0.829 Sum_probs=13.3
Q ss_pred CCCChhhhHhhhCCCCC
Q 040761 11 GSPCGACKFLRRKCASD 27 (215)
Q Consensus 11 ~~~CAACK~lRRrC~~d 27 (215)
..+|..||..+.||...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46788899888888753
No 6
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=23.16 E-value=19 Score=21.09 Aligned_cols=15 Identities=27% Similarity=0.928 Sum_probs=12.4
Q ss_pred CCChhhhHhhhCCCC
Q 040761 12 SPCGACKFLRRKCAS 26 (215)
Q Consensus 12 ~~CAACK~lRRrC~~ 26 (215)
++|..||..+.||..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 578999998889964
No 7
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=21.29 E-value=76 Score=23.02 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhcccCCCCCcHHH
Q 040761 69 EAVVTIAYEAQARIRDPVYGCVAH 92 (215)
Q Consensus 69 dA~~SLvYEA~aR~rDPVyGCvG~ 92 (215)
.++.+-+-.|.-|+.||=-|-+|.
T Consensus 11 ~~i~~kleqA~~WL~nP~~gg~Ge 34 (117)
T d1st6a4 11 QAIAKKIDAAQNWLADPNGGSEGE 34 (117)
T ss_dssp HHHHHHHHHHHHHHTCCSCCSSTH
T ss_pred HHHHHHHHHHHHHHHCCCCCChhH
Confidence 356777777888888886665553
No 8
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.85 E-value=26 Score=20.32 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=11.1
Q ss_pred CCChhhhHhhhCCCC
Q 040761 12 SPCGACKFLRRKCAS 26 (215)
Q Consensus 12 ~~CAACK~lRRrC~~ 26 (215)
.+|-.||..+.||..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 2 VACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred ccHHHHHHhCCcCCC
Confidence 467888888888864
No 9
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=19.27 E-value=23 Score=19.97 Aligned_cols=16 Identities=31% Similarity=0.839 Sum_probs=13.2
Q ss_pred CCChhhhHhhhCCCCC
Q 040761 12 SPCGACKFLRRKCASD 27 (215)
Q Consensus 12 ~~CAACK~lRRrC~~d 27 (215)
.+|..|+..+.||...
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 4799999999999753
No 10
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=16.49 E-value=95 Score=21.25 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040761 92 HIFALQQQVACLQAQLMQVKAQLAHNM 118 (215)
Q Consensus 92 ~I~~Lq~Qi~~lqaEL~~~k~qLA~~~ 118 (215)
.+..|+.++..+++++..++..++.+.
T Consensus 9 ~~~~l~~~l~~l~~~i~~l~~~~~e~~ 35 (133)
T d1fxkc_ 9 QLNIYQSQVELIQQQMEAVRATISELE 35 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777776666666554
Done!