Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>040762
MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS
YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRI
TAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFK
FWYLLPLCVIEISHF

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040762
        (195 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2010539 - symbol:AT1G28100 "AT1G28100" species...   668  1.2e-65   1


>TAIR|locus:2010539 [details] [associations]
            symbol:AT1G28100 "AT1G28100" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0015995 "chlorophyll biosynthetic process"
            evidence=RCA] EMBL:CP002684 UniGene:At.48242 UniGene:At.72850
            Gene3D:2.40.400.10 InterPro:IPR023375 IPI:IPI00544978
            RefSeq:NP_001077614.1 ProteinModelPortal:F4HWG6 PRIDE:F4HWG6
            DNASU:839703 EnsemblPlants:AT1G28100.4 GeneID:839703
            KEGG:ath:AT1G28100 OMA:YEDSPAG Uniprot:F4HWG6
        Length = 290

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 130/179 (72%), Positives = 147/179 (82%)

Query:     1 MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS 60
             M++E  + +SGY KPPWIFKG ALYQ+HLVKA TARAFIPKEF+LVEAFGYTLGGFFLAS
Sbjct:     1 MDVEEKRVSSGYAKPPWIFKGSALYQIHLVKAATARAFIPKEFRLVEAFGYTLGGFFLAS 60

Query:    61 YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK-- 118
             Y+DSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSD+AC HGRK VGLPSQVARFSK  
Sbjct:    61 YDDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDEACHHGRKEVGLPSQVARFSKVS 120

Query:   119 ------RITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQI 171
                    ITAV  Q + +  GFL   GLG TL  P+N M+V+VSE++  ++TDICNIQI
Sbjct:   121 DTLFLKNITAVPKQKRDRAFGFLDTFGLGTTLSHPENLMEVKVSEVDSAASTDICNIQI 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       195   0.00078  111 3  11 22  0.43    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.69u 0.10s 16.79t   Elapsed:  00:00:01
  Total cpu time:  16.69u 0.10s 16.79t   Elapsed:  00:00:01
  Start:  Sat May 11 10:55:51 2013   End:  Sat May 11 10:55:52 2013

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