BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040762
         (195 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4QHF4|ACKA_CORGB Acetate kinase OS=Corynebacterium glutamicum (strain R) GN=ackA
           PE=3 SV=1
          Length = 397

 Score = 33.5 bits (75), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 5/76 (6%)

Query: 82  PPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARF-SKRITAVQGQPKGKFNGFLSMMGL 140
           PP +  +A    +N D A +HG +  G       F SKR+  +  +P  + N     +G 
Sbjct: 157 PPAAALYA----INKDVAAEHGIRRYGFHGTSHEFVSKRVVEILEKPTEEINTITFHLGN 212

Query: 141 GATLCSPKNSMDVQVS 156
           GA++ + +    V  S
Sbjct: 213 GASMAAVQGGRAVDTS 228


>sp|P77845|ACKA_CORGL Acetate kinase OS=Corynebacterium glutamicum (strain ATCC 13032 /
           DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=ackA
           PE=1 SV=1
          Length = 397

 Score = 33.1 bits (74), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 82  PPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARF-SKRITAVQGQPKGKFNGFLSMMGL 140
           PP +  +A    +N D A +HG +  G       F SKR+  +  +P    N     +G 
Sbjct: 157 PPAAALYA----INKDVAAEHGIRRYGFHGTSHEFVSKRVVEILEKPTEDINTITFHLGN 212

Query: 141 GATLCSPKNSMDVQVS 156
           GA++ + +    V  S
Sbjct: 213 GASMAAVQGGRAVDTS 228


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,280,457
Number of Sequences: 539616
Number of extensions: 2875626
Number of successful extensions: 4891
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4889
Number of HSP's gapped (non-prelim): 2
length of query: 195
length of database: 191,569,459
effective HSP length: 111
effective length of query: 84
effective length of database: 131,672,083
effective search space: 11060454972
effective search space used: 11060454972
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)