Query 040762
Match_columns 195
No_of_seqs 117 out of 221
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 18:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bh2_A ADC, AAD, acetoacetate 99.9 2.5E-23 8.6E-28 176.9 12.3 106 8-118 15-122 (244)
2 3bgt_A ADC, AAD, probable acet 99.9 6.5E-23 2.2E-27 174.4 12.3 106 8-118 16-123 (246)
3 3c8w_A Acetoacetate decarboxyl 99.9 7E-23 2.4E-27 175.2 12.2 104 10-118 28-133 (255)
4 3cmb_A Acetoacetate decarboxyl 99.8 1.2E-18 4.1E-23 152.4 8.7 103 10-118 39-149 (283)
5 1r7l_A Phage protein; structur 13.4 51 0.0017 25.1 0.5 11 101-111 34-44 (110)
6 4h87_A Kanadaptin; FHA domain 12.9 81 0.0028 23.6 1.6 13 6-18 2-14 (130)
7 1lng_A SRP19, signal recogniti 10.8 42 0.0014 24.2 -0.6 24 92-118 6-29 (87)
8 1yll_A PA5104, conserved hypot 9.5 86 0.0029 25.6 0.7 30 104-134 27-61 (200)
9 2jsp_A Transcriptional regulat 9.5 70 0.0024 23.3 0.2 13 102-114 48-60 (87)
10 1kvn_A SRP19; RNA binding prot 8.1 61 0.0021 24.1 -0.7 24 92-118 9-32 (104)
No 1
>3bh2_A ADC, AAD, acetoacetate decarboxylase; lyase, plasmid, schiff base; 2.40A {Clostridium acetobutylicum atcc 824}
Probab=99.90 E-value=2.5e-23 Score=176.94 Aligned_cols=106 Identities=14% Similarity=0.199 Sum_probs=94.1
Q ss_pred CCCCCCCCCcEEE-EeEEEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEc-CCCCCcccceeeEEeEEEeCCCcc
Q 040762 8 CTSGYGKPPWIFK-GRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASY-EDSPAGVFDELVVIAGIVWNPPTS 85 (195)
Q Consensus 8 ~~p~YppaPW~l~-G~a~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY-~dSpVGpYdELlvipg~V~~~~~~ 85 (195)
.+++||++||++. ++.+.+.|++|++++++++|.+|++.+ +++.+++++| +.+.+|+|+|+.+. ..|+++++.
T Consensus 15 ~~~~~p~~p~~~~~~~~~~~~~~td~~~l~~llP~~L~~~~----~~v~~~~~~~~~~~~~g~Y~E~~v~-i~v~~~G~~ 89 (244)
T 3bh2_A 15 TSPAFPRGPYKFHNREYFNIVYRTDMDALRKVVPEPLEIDE----PLVRFEIMAMHDTSGLGCYTESGQA-IPVSFNGVK 89 (244)
T ss_dssp TSCSSCCSCCEEEEEEEEEEEEECCHHHHHHHSCTTCBCSS----CEEEEEEEEEEEETTTEEEEEEEEE-EEEEETTEE
T ss_pred cCCCCCCCceEecCCcEEEEEEEcCHHHHHhhCCCCcccCc----cEEEEEEEECCCCCCccCcCEEeEE-EEEEECCeE
Confidence 3489999999999 555556889999999999999998765 7899999999 55577999998774 448889999
Q ss_pred ceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762 86 CAWAARVLVNSDQACDHGRKHVGLPSQVARFSK 118 (195)
Q Consensus 86 ~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~ 118 (195)
+.|++.||||++.|+++|||+||+||++|+|++
T Consensus 90 g~y~~~l~vd~~~ai~~GRe~~G~PK~~a~~~~ 122 (244)
T 3bh2_A 90 GDYLHMMYLDNEPAIAVGRELSAYPKKLGYPKL 122 (244)
T ss_dssp EEEEEEEEESCHHHHHHHHHTSCCCEEECEEEE
T ss_pred EEEEEEEECCChhHHHHhHHhhCCCcccccceE
Confidence 999999999999999999999999999999999
No 2
>3bgt_A ADC, AAD, probable acetoacetate decarboxylase; lyase, schiff base; HET: MSE; 2.10A {Chromobacterium violaceum} PDB: 3bh3_A
Probab=99.89 E-value=6.5e-23 Score=174.37 Aligned_cols=106 Identities=13% Similarity=0.222 Sum_probs=93.6
Q ss_pred CCCCCCCCCcEEEEeE-EEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCC-CCCcccceeeEEeEEEeCCCcc
Q 040762 8 CTSGYGKPPWIFKGRA-LYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYED-SPAGVFDELVVIAGIVWNPPTS 85 (195)
Q Consensus 8 ~~p~YppaPW~l~G~a-~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~d-SpVGpYdELlvipg~V~~~~~~ 85 (195)
.+|.||++||++.++. +...|++|++++++++|++|++.. +++++++++|.+ +.+|+|+|+.+. ..|+++++.
T Consensus 16 ~~p~~p~~p~~~~~~~~~~~~~~td~~~l~~llP~~L~~~~----~~v~~~~~~~~~~~~~g~Y~E~~v~-i~V~~~G~~ 90 (246)
T 3bgt_A 16 TSPAFPPGPYRFVNREYMIITYRTDPAAIEAVLPEPLQMAE----PVVRYEFIRMPDSTGFGDYSESGQV-IPVTFRGER 90 (246)
T ss_dssp TSCSSCCCCEEEEEEEEEEEEEECCHHHHHTTCCTTSEECS----SEEEEEEEEEEEETTTEEEEEEEEE-EEEEETTEE
T ss_pred CCCCCCCCccEEcceeEEEEEEEcCHHHHHhhCCCCcccCC----CEEEEEEEECCCCCCcccccEEEEE-EEEEECCEE
Confidence 4489999999999555 444789999999999999999865 779999999955 488999998773 348889999
Q ss_pred ceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762 86 CAWAARVLVNSDQACDHGRKHVGLPSQVARFSK 118 (195)
Q Consensus 86 ~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~ 118 (195)
+.|++.||||++.++++|||+||+||++|+|++
T Consensus 91 g~y~~~l~vd~~~ai~~GRe~~G~PK~~a~~~~ 123 (246)
T 3bgt_A 91 GSYTLAMFLDDQPPLAGGRELWGFPKKAGKPRL 123 (246)
T ss_dssp EEEEEEEEESCHHHHHHHHHTTCCCEEECEEEE
T ss_pred EEEEEEEECCCchHHHHHHHHhCCCcccCCceE
Confidence 999999999999999999999999999999998
No 3
>3c8w_A Acetoacetate decarboxylase ADC; YP_094708.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; HET: LCK CIT; 1.60A {Legionella pneumophila subsp} SCOP: d.347.1.1
Probab=99.89 E-value=7e-23 Score=175.21 Aligned_cols=104 Identities=17% Similarity=0.301 Sum_probs=93.8
Q ss_pred CCCCCCCcEEEEeEEEEE-EeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCC-CCCcccceeeEEeEEEeCCCccce
Q 040762 10 SGYGKPPWIFKGRALYQL-HLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYED-SPAGVFDELVVIAGIVWNPPTSCA 87 (195)
Q Consensus 10 p~YppaPW~l~G~a~~~l-~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~d-SpVGpYdELlvipg~V~~~~~~~~ 87 (195)
|+||++||++.++.++++ |++|++++++++|.+|++.+ +++++++++|.+ +.+|+|+|+.+. ..|+++++.+.
T Consensus 28 p~~p~~p~~~~~~~~l~v~~~td~~~l~~llP~~L~~~~----~~v~~~~~~~~~~~~~g~Y~E~~v~-i~V~~~G~~g~ 102 (255)
T 3c8w_A 28 NTYPAGPYRFINREFFIIAYETDPDLLQAILPPDMELLE----PVVKFEFIRMPDSTGFGDYTESGQV-VPVRYKGEEGG 102 (255)
T ss_dssp CSSCCSCEEEEEEEEEEEEEECCHHHHHHHSCTTEEESS----SEEEEEEEEEEEETTTEEEEEEEEE-EEEEETTEEEE
T ss_pred CCCCCCCEEEcCCcEEEEEEEECHHHHHhhCCCCcccCC----CEEEEEEEEcCCCCCccCccEEEEE-EEEEECCEEEE
Confidence 799999999998877775 79999999999999998876 679999999954 467999998763 34888999999
Q ss_pred eEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762 88 WAARVLVNSDQACDHGRKHVGLPSQVARFSK 118 (195)
Q Consensus 88 ~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~ 118 (195)
|++.||||++.|+++|||+||+||++|+|++
T Consensus 103 y~~~l~vd~~~ai~~GRe~~G~PK~~a~~~~ 133 (255)
T 3c8w_A 103 FTISMFLDCHAPIAGGREIWGFPXKLAKPKL 133 (255)
T ss_dssp EEEEEEESCHHHHHHHHHTTCCCEEECEEEE
T ss_pred EEEEEECCChhHHHHHHHHhCCCCccCCceE
Confidence 9999999999999999999999999999998
No 4
>3cmb_A Acetoacetate decarboxylase; YP_001047042.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE P33 PE8; 1.60A {Methanoculleus marisnigri JR1} SCOP: d.347.1.1
Probab=99.76 E-value=1.2e-18 Score=152.38 Aligned_cols=103 Identities=16% Similarity=0.157 Sum_probs=87.7
Q ss_pred CCCCCCCcEEEEeE-EEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCCCC-C--cccceeeEEeEEEeCCCc-
Q 040762 10 SGYGKPPWIFKGRA-LYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSP-A--GVFDELVVIAGIVWNPPT- 84 (195)
Q Consensus 10 p~YppaPW~l~G~a-~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~dSp-V--GpYdELlvipg~V~~~~~- 84 (195)
|.||++|.. .+.. +.+.|++|++++++++|++|++.+ +++.+++++|.++. . |+|+|+.+. ..|+|+++
T Consensus 39 p~~p~~p~~-~~~~~~~i~y~Td~~al~~llP~~L~~~~----P~v~~~~~~~~d~~~~~gg~Y~E~gv~-i~V~y~g~~ 112 (283)
T 3cmb_A 39 KFDPETLVT-QKATALSLSFETERDLLENYIPEGFELLA----PEVQVAFNKFTEINWLHGGQYNLINVA-APVRFHGKK 112 (283)
T ss_dssp ECCTTCEEE-EEEEEEEEEEECCHHHHHTTSBTTEEECS----SEEEEEEEEEEEEGGGTTEEEEEEEEE-EEEEEECSS
T ss_pred CCCCCCCcc-cceEEEEEEEEECHHHHHHhCCCCcccCC----CEEEEEEEEccCCCCCCCCCccEEEEE-EEEEECCcc
Confidence 679997666 5555 445789999999999999988765 57999999996554 6 899998764 35888888
Q ss_pred ---cceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762 85 ---SCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK 118 (195)
Q Consensus 85 ---~~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~ 118 (195)
.+.|++.||||++.++++|||+||+||++|++..
T Consensus 113 ~~~~G~y~~~m~vD~~~~i~~GREi~G~PKk~a~i~~ 149 (283)
T 3cmb_A 113 DELDGAYTLVVWENKTAPILGGREQTGIPKIYADIED 149 (283)
T ss_dssp CEEEEEEEEEEEESSHHHHHHHHHHHCCCEEECEECC
T ss_pred ceeeEEEEeEEEcCChhHhhhhhhhcCCcchhcCcee
Confidence 8999999999999999999999999999999765
No 5
>1r7l_A Phage protein; structural genomics, two layers alpha-beta sandwich, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Bacillus cereus} SCOP: d.277.1.1
Probab=13.36 E-value=51 Score=25.13 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=10.3
Q ss_pred HhhhhccCCCC
Q 040762 101 DHGRKHVGLPS 111 (195)
Q Consensus 101 ~~GRe~WGiPK 111 (195)
.+||.+|+|||
T Consensus 34 ~dG~~~~~iPk 44 (110)
T 1r7l_A 34 KDGRYRLGIPL 44 (110)
T ss_dssp ETTTEEECCCC
T ss_pred cCCccccCCCC
Confidence 67999999999
No 6
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=12.90 E-value=81 Score=23.58 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCcE
Q 040762 6 PKCTSGYGKPPWI 18 (195)
Q Consensus 6 ~~~~p~YppaPW~ 18 (195)
++.+|+|.+|||-
T Consensus 2 ~~~~ppy~~P~wa 14 (130)
T 4h87_A 2 MARAPPYQEPPWG 14 (130)
T ss_dssp CCCCCSCCCCTTB
T ss_pred CCCCcCCCCCCCc
Confidence 3456889999984
No 7
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=10.85 E-value=42 Score=24.21 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEcCChhhHHhhhhccCCCCcceeeeE
Q 040762 92 VLVNSDQACDHGRKHVGLPSQVARFSK 118 (195)
Q Consensus 92 IyVDse~Sv~~GRe~WGiPK~LA~F~~ 118 (195)
.|.|+.-|..-||+ +||.+|.-+=
T Consensus 6 ~Y~ds~~tr~eGRr---v~k~~aV~~P 29 (87)
T 1lng_A 6 SYIDKKKSRREGRK---VPEELAIEKP 29 (87)
T ss_dssp GGTBTTSCTTTTCC---SCTTTCBSSC
T ss_pred ccccCCCChhhcCc---cCHHHhccCC
Confidence 37899999999998 5999987554
No 8
>1yll_A PA5104, conserved hypothetical protein; structural genomics, beta-BA PSI, protein structure initiative, midwest center for struc genomics; 1.64A {Pseudomonas aeruginosa} SCOP: b.82.1.17
Probab=9.53 E-value=86 Score=25.61 Aligned_cols=30 Identities=13% Similarity=0.225 Sum_probs=17.6
Q ss_pred hhccCCCCc--ceeeeEEee---eecccccCccCCc
Q 040762 104 RKHVGLPSQ--VARFSKRIT---AVQGQPKGKFNGF 134 (195)
Q Consensus 104 Re~WGiPK~--LA~F~~~i~---~~~~~~~~~~~~~ 134 (195)
||+. .|+. +.+|+|||+ +.++++-+.|.|+
T Consensus 27 rEI~-~P~~~~~~~F~wRiSiA~V~~~g~FS~FpGi 61 (200)
T 1yll_A 27 EEIA-RDGGDGLDGFGWRLSIADVGESGGFSGFAGY 61 (200)
T ss_dssp EEEE-ESSCSGGGSCSEEEEEEEECSCEEECCCTTC
T ss_pred EEEE-ecCCCCcCCceEEEEEEEeccCCCCCCCCCc
Confidence 3555 5643 578999776 3455555555543
No 9
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=9.52 E-value=70 Score=23.32 Aligned_cols=13 Identities=23% Similarity=0.286 Sum_probs=10.0
Q ss_pred hhhhccCCCCcce
Q 040762 102 HGRKHVGLPSQVA 114 (195)
Q Consensus 102 ~GRe~WGiPK~LA 114 (195)
-=|+-||+|+...
T Consensus 48 eYR~kwGlp~dyP 60 (87)
T 2jsp_A 48 EYREKWDLPVDYP 60 (87)
T ss_dssp HHHHHTTCGGGCC
T ss_pred HHHHHhCCCCCCc
Confidence 3488999999753
No 10
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=8.10 E-value=61 Score=24.10 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEcCChhhHHhhhhccCCCCcceeeeE
Q 040762 92 VLVNSDQACDHGRKHVGLPSQVARFSK 118 (195)
Q Consensus 92 IyVDse~Sv~~GRe~WGiPK~LA~F~~ 118 (195)
.|.|+.-|..-||+ +||.+|.-+-
T Consensus 9 ~Y~Ds~~tr~eGRR---v~k~~aV~nP 32 (104)
T 1kvn_A 9 VNLDSKKSRAEGRR---IPRRFAVPNV 32 (104)
T ss_dssp TTTCSSSCTTTTCC---SCGGGCCSSC
T ss_pred ccccCCCChhhCCc---cCHHHhccCC
Confidence 47899999999998 5999987554
Done!