Query 040765
Match_columns 141
No_of_seqs 209 out of 1479
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0157 Cytochrome P450 CYP4/C 100.0 3.3E-41 7.2E-46 263.5 10.9 141 1-141 354-495 (497)
2 KOG0158 Cytochrome P450 CYP3/C 100.0 7.6E-41 1.6E-45 258.3 12.4 139 1-141 356-498 (499)
3 PLN02169 fatty acid (omega-1)- 100.0 7.7E-40 1.7E-44 256.0 12.4 141 1-141 357-499 (500)
4 PLN03195 fatty acid omega-hydr 100.0 4.7E-39 1E-43 252.2 10.8 141 1-141 374-515 (516)
5 PLN02290 cytokinin trans-hydro 100.0 1.3E-38 2.8E-43 249.6 11.8 138 1-141 377-514 (516)
6 PLN02500 cytochrome P450 90B1 100.0 3.2E-38 6.9E-43 246.2 11.9 138 1-141 346-489 (490)
7 PLN02426 cytochrome P450, fami 100.0 4.8E-38 1E-42 246.0 12.0 141 1-141 356-499 (502)
8 PLN02774 brassinosteroid-6-oxi 100.0 1.1E-37 2.5E-42 241.7 11.3 134 1-140 329-462 (463)
9 KOG0159 Cytochrome P450 CYP11/ 100.0 6.3E-38 1.4E-42 239.6 9.6 139 1-141 379-517 (519)
10 PF00067 p450: Cytochrome P450 100.0 6.3E-38 1.4E-42 238.7 8.2 137 1-138 324-463 (463)
11 PLN02738 carotene beta-ring hy 100.0 4.5E-37 9.7E-42 245.6 12.7 140 1-141 452-594 (633)
12 PLN03141 3-epi-6-deoxocathaste 100.0 2.8E-37 6E-42 238.9 11.1 133 1-141 317-449 (452)
13 PLN00168 Cytochrome P450; Prov 100.0 3.9E-37 8.4E-42 241.6 11.9 140 1-141 369-516 (519)
14 PLN03234 cytochrome P450 83B1; 100.0 3.5E-37 7.5E-42 240.7 11.2 141 1-141 350-498 (499)
15 PLN00110 flavonoid 3',5'-hydro 100.0 3.4E-37 7.3E-42 241.3 11.1 140 1-141 351-496 (504)
16 PTZ00404 cytochrome P450; Prov 100.0 4.6E-37 1E-41 239.1 11.5 134 1-141 345-482 (482)
17 PLN02966 cytochrome P450 83A1 100.0 7.5E-37 1.6E-41 239.2 11.9 118 1-118 353-471 (502)
18 PLN02183 ferulate 5-hydroxylas 100.0 6.7E-37 1.5E-41 240.1 11.6 140 1-141 366-511 (516)
19 KOG0156 Cytochrome P450 CYP2 s 100.0 7E-37 1.5E-41 237.6 10.9 115 1-117 348-463 (489)
20 PLN02394 trans-cinnamate 4-mon 100.0 1.8E-36 3.8E-41 236.9 12.1 140 1-141 355-501 (503)
21 PLN02655 ent-kaurene oxidase 100.0 2.5E-36 5.4E-41 234.4 11.9 139 1-141 323-463 (466)
22 PLN02987 Cytochrome P450, fami 100.0 2.8E-36 6.1E-41 234.6 11.6 137 1-141 332-468 (472)
23 PLN02971 tryptophan N-hydroxyl 100.0 3.9E-36 8.5E-41 237.1 11.3 139 1-141 389-533 (543)
24 PLN02936 epsilon-ring hydroxyl 100.0 6.2E-36 1.3E-40 233.4 12.1 140 1-141 339-481 (489)
25 PLN02687 flavonoid 3'-monooxyg 100.0 5.5E-36 1.2E-40 235.0 11.4 140 1-141 359-508 (517)
26 PLN03018 homomethionine N-hydr 100.0 1.1E-35 2.5E-40 234.1 12.6 139 1-141 376-523 (534)
27 PLN02196 abscisic acid 8'-hydr 100.0 5.2E-36 1.1E-40 232.5 10.0 133 1-140 329-461 (463)
28 PLN02302 ent-kaurenoic acid ox 100.0 7.4E-36 1.6E-40 232.4 10.8 135 1-141 353-487 (490)
29 PLN03112 cytochrome P450 famil 100.0 3.3E-35 7.1E-40 230.4 11.4 140 1-141 358-507 (514)
30 KOG0684 Cytochrome P450 [Secon 100.0 3E-34 6.5E-39 215.9 8.6 140 1-141 336-484 (486)
31 COG2124 CypX Cytochrome P450 [ 100.0 3E-32 6.4E-37 208.9 8.7 128 2-141 283-410 (411)
32 PLN02648 allene oxide synthase 100.0 5.8E-30 1.3E-34 199.3 9.8 116 1-120 336-465 (480)
33 PF12508 DUF3714: Protein of u 83.5 0.78 1.7E-05 32.3 1.7 38 2-40 56-93 (200)
34 TIGR03779 Bac_Flav_CT_M Bacter 66.9 3.9 8.4E-05 32.0 1.7 51 2-53 259-320 (410)
35 PF11138 DUF2911: Protein of u 66.8 11 0.00023 25.3 3.6 41 22-64 52-99 (145)
36 PF09201 SRX: SRX; InterPro: 64.7 6.1 0.00013 26.2 2.1 23 87-109 18-40 (148)
37 PF08492 SRP72: SRP72 RNA-bind 63.5 5.3 0.00012 22.4 1.4 8 61-68 44-51 (59)
38 KOG3302 TATA-box binding prote 58.1 5.1 0.00011 28.0 0.9 34 58-91 50-83 (200)
39 cd04518 TBP_archaea archaeal T 47.5 7.8 0.00017 26.7 0.5 35 58-92 29-63 (174)
40 cd00652 TBP_TLF TATA box bindi 46.1 27 0.00058 24.0 2.9 55 58-113 29-86 (174)
41 COG2101 SPT15 TATA-box binding 45.5 9.1 0.0002 26.4 0.6 35 58-92 35-69 (185)
42 cd04516 TBP_eukaryotes eukaryo 45.0 17 0.00037 25.0 1.8 34 58-91 29-62 (174)
43 KOG3506 40S ribosomal protein 43.1 11 0.00023 20.7 0.5 10 81-90 13-22 (56)
44 PRK06789 flagellar motor switc 42.4 28 0.0006 20.5 2.2 39 4-42 21-62 (74)
45 PF12444 Sox_N: Sox developmen 36.9 26 0.00056 21.1 1.5 21 97-117 60-80 (84)
46 PRK00394 transcription factor; 36.5 15 0.00033 25.4 0.6 34 58-91 28-61 (179)
47 PF14550 Peptidase_U35_2: Puta 36.4 26 0.00057 22.7 1.6 29 22-53 73-101 (122)
48 PRK14759 potassium-transportin 34.9 16 0.00035 17.3 0.3 6 60-65 24-29 (29)
49 PLN00062 TATA-box-binding prot 34.2 15 0.00033 25.4 0.3 55 58-112 29-85 (179)
50 PF00352 TBP: Transcription fa 32.4 12 0.00026 22.4 -0.4 35 58-92 31-65 (86)
51 PF11227 DUF3025: Protein of u 32.4 27 0.00059 24.9 1.3 25 39-64 186-211 (212)
52 PF02663 FmdE: FmdE, Molybdenu 27.0 79 0.0017 20.3 2.8 23 86-108 4-26 (131)
53 PHA03162 hypothetical protein; 25.3 43 0.00094 21.9 1.2 24 83-106 2-25 (135)
54 PTZ00218 40S ribosomal protein 23.0 37 0.00081 18.6 0.5 15 81-95 11-27 (54)
55 TIGR02115 potass_kdpF K+-trans 22.9 22 0.00047 16.4 -0.4 7 60-66 19-25 (26)
56 PRK05933 type III secretion sy 22.2 90 0.002 24.0 2.5 40 3-42 319-362 (372)
57 cd02515 Glyco_transf_6 Glycosy 21.3 76 0.0016 23.6 1.9 45 48-100 152-201 (271)
58 PF15300 INT_SG_DDX_CT_C: INTS 21.1 24 0.00051 20.2 -0.5 11 2-12 44-54 (65)
No 1
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00 E-value=3.3e-41 Score=263.45 Aligned_cols=141 Identities=37% Similarity=0.708 Sum_probs=129.6
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceec-CeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLG-EIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~-g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|++||+|||||||++|.+.|.+.+|+.++ |+.||+|+.|.++++++|||+.+|++||++|+||||+++......+++.|
T Consensus 354 l~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~f 433 (497)
T KOG0157|consen 354 LEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAF 433 (497)
T ss_pred HHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccc
Confidence 47899999999999999999999999995 89999999999999999999999987999999999997544434567899
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
+|||+|+|.|+|++||++||++++++|+++|+++++.+....+....+++|++|++|++++|
T Consensus 434 ipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~v~~~~r 495 (497)
T KOG0157|consen 434 IPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDKPKPVPELTLRPKNGLKVKLRPR 495 (497)
T ss_pred cCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCCceeeeEEEEEecCCeEEEEEeC
Confidence 99999999999999999999999999999999999877545667789999999999999987
No 2
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.6e-41 Score=258.35 Aligned_cols=139 Identities=42% Similarity=0.786 Sum_probs=126.4
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceec-CeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLG-EIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~-g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|++||+||||+||+++.+.|.+++|+++. ++.|++|+.|.++.+++||||++| +||++|+||||.+++.+ ..++..|
T Consensus 356 Ld~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PERF~~~~~~-~~~~~~y 433 (499)
T KOG0158|consen 356 LDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYW-PEPEKFKPERFEEENNK-SRHPGAY 433 (499)
T ss_pred HHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccC-CCcccCCCccCCCCccc-ccCCccc
Confidence 68999999999999999999999999999 999999999999999999999999 99999999999976543 4578899
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCc---ceeeecCCCceEEEEEC
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTR---GATVYPQHGANIILHKI 141 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~---~~~~~p~~~~~v~~~~r 141 (141)
+|||.|+|.|+|.+||++|+|+.|++||++|+++..+.+...-.. ..++.|++|++|++++|
T Consensus 434 lPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~~~~~~~~~~l~pk~gi~Lkl~~r 498 (499)
T KOG0158|consen 434 LPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIPLEGDPKGFTLSPKGGIWLKLEPR 498 (499)
T ss_pred cCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCcccCCccceeeecCCceEEEEEeC
Confidence 999999999999999999999999999999999988743332222 67899999999999987
No 3
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=7.7e-40 Score=256.01 Aligned_cols=141 Identities=25% Similarity=0.451 Sum_probs=122.9
Q ss_pred CchhhhhhhcCCCCCCCceeecccccee-cCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCC-CCccc
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKL-GEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKAS-KNQIS 78 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~-~~~~~ 78 (141)
|+|||+||||+||+++.+.|.+.+|.++ +|+.||+|+.|.+++|++||||++||+||++|+||||++++.... ..+..
T Consensus 357 l~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~ 436 (500)
T PLN02169 357 LHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYK 436 (500)
T ss_pred HHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCcc
Confidence 5799999999999999988887777664 899999999999999999999999988999999999996533211 23678
Q ss_pred eeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 79 FFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 79 ~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
|+|||+|+|+|+|++||++|++++++.|+++|++++.++.........++.|+++++|++++|
T Consensus 437 ~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 437 FMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGHKIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred ccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCCCcccccceEEecCCCEEEEEEeC
Confidence 999999999999999999999999999999999999765444334457889999999999986
No 4
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=4.7e-39 Score=252.20 Aligned_cols=141 Identities=26% Similarity=0.413 Sum_probs=121.0
Q ss_pred CchhhhhhhcCCCCCCCceeecccccee-cCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKL-GEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|+|||+|+||++|+++...|.+.+|..+ +|+.||+|+.|.++.+++|+||++||+||++|+||||++++......+..|
T Consensus 374 l~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~ 453 (516)
T PLN03195 374 LHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKF 453 (516)
T ss_pred HHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceE
Confidence 5799999999999999988877777665 899999999999999999999999988999999999996432122345679
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
+|||.|+|+|+|++||++|++++++.|+++|++++.++.........+..|.++++|++++|
T Consensus 454 ~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r 515 (516)
T PLN03195 454 TAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHPVKYRMMTILSMANGLKVTVSRR 515 (516)
T ss_pred eccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCcceeeeeeEEecCCCEEEEEEeC
Confidence 99999999999999999999999999999999998765433333345678999999999987
No 5
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=1.3e-38 Score=249.64 Aligned_cols=138 Identities=43% Similarity=0.833 Sum_probs=123.3
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCcccee
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFF 80 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~ 80 (141)
|+|||+||||++|+++.++|.+.+|++++|+.||+|+.|.++.+++|+||++|++||++|+||||++... .....++
T Consensus 377 l~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~~---~~~~~~~ 453 (516)
T PLN02290 377 LNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPF---APGRHFI 453 (516)
T ss_pred HHHHHHHHHHcCCCccccceeecCCeeECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCCC---CCCCeEe
Confidence 5799999999999999899999999999999999999999999999999999966999999999995321 2345799
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 81 SFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 81 ~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
|||.|+|.|+|++||++|++++++.|+++|++++.++.........+..|+++++|++++|
T Consensus 454 pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 514 (516)
T PLN02290 454 PFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYRHAPVVVLTIKPKYGVQVCLKPL 514 (516)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcccCccceeeecCCCCCeEEEEeC
Confidence 9999999999999999999999999999999998776433334468899999999999987
No 6
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=3.2e-38 Score=246.19 Aligned_cols=138 Identities=26% Similarity=0.433 Sum_probs=118.7
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCC------C
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKAS------K 74 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~------~ 74 (141)
|+|||+|+||+||+++.+.|.+.+|++++||.||||+.|+++.+++||||++| +||++|+||||++++.... .
T Consensus 346 l~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~~hrdp~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~ 424 (490)
T PLN02500 346 TQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAAVHLDSSLY-DQPQLFNPWRWQQNNNRGGSSGSSSA 424 (490)
T ss_pred HHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhhcccCcccC-CCccccChhhccCCCcccccccccCC
Confidence 47999999999999999889999999999999999999999999999999999 8999999999996432211 2
Q ss_pred CccceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 75 NQISFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 75 ~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
.+..|+|||.|+|.|+|+++|.+|++++++.|+++|++++.++...... . ...+.++++|++++.
T Consensus 425 ~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~ 489 (490)
T PLN02500 425 TTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQAFAF-P-FVDFPKGLPIRVRRI 489 (490)
T ss_pred CCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCcceec-c-cccCCCCceEEEEeC
Confidence 3567999999999999999999999999999999999998766433222 2 235557999999863
No 7
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=4.8e-38 Score=245.99 Aligned_cols=141 Identities=21% Similarity=0.390 Sum_probs=122.3
Q ss_pred CchhhhhhhcCCCCCCCceeecccccee-cCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKL-GEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|+|||+|+||++|+++...|.+.+|..+ +|+.||+||.|.++.+++|||+++||+||++|+||||+++.......+..+
T Consensus 356 l~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~ 435 (502)
T PLN02426 356 LHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKY 435 (502)
T ss_pred HHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCccc
Confidence 5799999999999999888999988877 899999999999999999999999999999999999997432112345678
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcc--cCCCcceeeecCCCceEEEEEC
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYI--HAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~--~~~~~~~~~~p~~~~~v~~~~r 141 (141)
+|||.|+|.|+|+++|++|++++++.|+++|++++.++.. .......+..|++|++|++++|
T Consensus 436 ~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~r 499 (502)
T PLN02426 436 PVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLPVRVRER 499 (502)
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEEEEEEEc
Confidence 9999999999999999999999999999999999864322 2233457889999999999986
No 8
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=1.1e-37 Score=241.70 Aligned_cols=134 Identities=21% Similarity=0.341 Sum_probs=117.9
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCcccee
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFF 80 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~ 80 (141)
|+|||+|+||++|+++.+.|++.+|++++|+.||||+.|+++.+.+|+||++| +||++|+||||++++.. ....++
T Consensus 329 l~a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~rdp~~~-~dP~~F~PeRfl~~~~~---~~~~~l 404 (463)
T PLN02774 329 TRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREINYDPFLY-PDPMTFNPWRWLDKSLE---SHNYFF 404 (463)
T ss_pred HHHHHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhcCCcccC-CChhccCchhcCCCCcC---CCcccc
Confidence 47999999999999998889999999999999999999999999999999999 89999999999964321 123699
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEE
Q 040765 81 SFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHK 140 (141)
Q Consensus 81 ~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 140 (141)
|||+|+|.|+|+++|.+|++++++.|+++|++++.++..... ..+..|++|++|++++
T Consensus 405 pFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~~~~--~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 405 LFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDKLMK--FPRVEAPNGLHIRVSP 462 (463)
T ss_pred CcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCcccc--CCCCCCCCCceEEeee
Confidence 999999999999999999999999999999999977643322 2345689999999875
No 9
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=6.3e-38 Score=239.63 Aligned_cols=139 Identities=24% Similarity=0.425 Sum_probs=129.6
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCcccee
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFF 80 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~ 80 (141)
|.||||||+||||.++++.|+..+|..++||.|||||.|.++.+.+.+||++| ++|++|+||||++++. ...+++.++
T Consensus 379 LrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~~~~F-~~p~~F~PeRWL~~~~-~~~~pF~~L 456 (519)
T KOG0159|consen 379 LRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRNPAYF-PDPEEFLPERWLKPST-KTIHPFASL 456 (519)
T ss_pred HHHHHHhhhceeccccccccccchhceeccceecCCCeEEEeehhhccChhhC-CCccccChhhhccccc-CCCCCceec
Confidence 56999999999999999999999999999999999999999999999999999 8999999999998763 346789999
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 81 SFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 81 ~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
|||.|+|+|+|+++|.+||.++|++++++|+++..+..+......+++.|..++.++|++|
T Consensus 457 PFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~~pv~~~~~~il~P~~~l~f~f~~r 517 (519)
T KOG0159|consen 457 PFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHEEPVEYVYRFILVPNRPLRFKFRPR 517 (519)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCCCCccceeEEEEcCCCCcceeeeeC
Confidence 9999999999999999999999999999999999887666667789999999999999876
No 10
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=6.3e-38 Score=238.72 Aligned_cols=137 Identities=34% Similarity=0.696 Sum_probs=115.9
Q ss_pred CchhhhhhhcCCCCCC-CceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAP-LLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~-~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|+|||+||||++|+++ .++|.+.+|++++|+.||+|+.|.++.+++|+|+++| +||++|+|+||++.+.........+
T Consensus 324 l~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d~~~~-~dp~~F~P~R~~~~~~~~~~~~~~~ 402 (463)
T PF00067_consen 324 LDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRDPEYF-PDPDEFDPERFLDERGISNRPSFAF 402 (463)
T ss_dssp HHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTSTTTS-SSTTS--TTGGBTTTSTBCSSSTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc
Confidence 5799999999999999 6889999999999999999999999999999999999 9999999999998765233567889
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCc--ceeeecCCCceEEE
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTR--GATVYPQHGANIIL 138 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~--~~~~~p~~~~~v~~ 138 (141)
+|||.|+|.|+|+++|.+|++++++.|+++|++++.++....... .....|..++.|.|
T Consensus 403 ~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 403 LPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp STTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence 999999999999999999999999999999999997654332222 14566666777765
No 11
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=4.5e-37 Score=245.61 Aligned_cols=140 Identities=34% Similarity=0.627 Sum_probs=122.2
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcc--cCCCCccc
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVS--KASKNQIS 78 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~--~~~~~~~~ 78 (141)
|+|||+|+|||||+++.+.|++.+|..++||.||+||.|.++.+.+|+||++| +||++|+||||+.+.. ........
T Consensus 452 L~AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~if-pdP~~F~PERWl~~~~~~~~~~~~~~ 530 (633)
T PLN02738 452 TTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPKHW-DDAEKFNPERWPLDGPNPNETNQNFS 530 (633)
T ss_pred HHHHHHHHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCcccc-CCccccCcccCCCCCCCccccCCCCc
Confidence 57999999999999998889999999999999999999999999999999999 8999999999985321 11234567
Q ss_pred eeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcc-cCCCcceeeecCCCceEEEEEC
Q 040765 79 FFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYI-HAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 79 ~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~r 141 (141)
++|||.|+|.|+|++||++|++++++.|+++|++++.++.. .......+..|.+++++++++|
T Consensus 531 ~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R 594 (633)
T PLN02738 531 YLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRR 594 (633)
T ss_pred eeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEEC
Confidence 99999999999999999999999999999999999876542 2222356788999999999987
No 12
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=2.8e-37 Score=238.87 Aligned_cols=133 Identities=28% Similarity=0.421 Sum_probs=120.4
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCcccee
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFF 80 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~ 80 (141)
|+|||+|++|+||+++.++|.+.+|++++||.||+|+.|+++.+++|+|+++| +||++|+||||++++ ..+..|+
T Consensus 317 l~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~----~~~~~~~ 391 (452)
T PLN03141 317 TQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSVHLDEENY-DNPYQFNPWRWQEKD----MNNSSFT 391 (452)
T ss_pred HHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhccCCchhc-CCccccCcccccCCC----CCCCCCC
Confidence 47999999999999988899999999999999999999999999999999999 899999999999752 2356799
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 81 SFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 81 ~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
|||.|+|.|+|++||.+|++++++.|+++|++++.++.. ....++.|.+++.|.+++|
T Consensus 392 pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 449 (452)
T PLN03141 392 PFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI---VNFPTVRMKRKLPIWVTRI 449 (452)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe---eecccccCCCCceEEEEeC
Confidence 999999999999999999999999999999999876542 2235789999999999987
No 13
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=3.9e-37 Score=241.62 Aligned_cols=140 Identities=24% Similarity=0.426 Sum_probs=120.3
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCccc-----CCC
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSK-----ASK 74 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~-----~~~ 74 (141)
|+|||+|+||+||+++. ++|.+.+|++++|+.||+|+.|.++.+++|+||++| +||++|+||||++.... ...
T Consensus 369 l~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~IpkGt~v~~~~~~~~~d~~~~-~~p~~F~PeRf~~~~~~~~~~~~~~ 447 (519)
T PLN00168 369 LKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPKGATVNFMVAEMGRDEREW-ERPMEFVPERFLAGGDGEGVDVTGS 447 (519)
T ss_pred HHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECCCCEEEEChHHHhcCcccc-CCccccCcccCCCCCCCcccccccc
Confidence 47999999999999987 589999999999999999999999999999999999 89999999999964221 112
Q ss_pred CccceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCC--CcceeeecCCCceEEEEEC
Q 040765 75 NQISFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAP--TRGATVYPQHGANIILHKI 141 (141)
Q Consensus 75 ~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~--~~~~~~~p~~~~~v~~~~r 141 (141)
....++|||.|+|+|+|++||.+|++++++.|+++|++++.++..... ...++..+.++++|++++|
T Consensus 448 ~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 516 (519)
T PLN00168 448 REIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKREFTTVMAKPLRARLVPR 516 (519)
T ss_pred CCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhhhceeEEeecCCcEEEEEec
Confidence 345799999999999999999999999999999999999876543222 2346777888999999887
No 14
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=3.5e-37 Score=240.69 Aligned_cols=141 Identities=23% Similarity=0.423 Sum_probs=120.7
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCccc--CCCCcc
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSK--ASKNQI 77 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~--~~~~~~ 77 (141)
|+|||+|+||++|+++. +.|.+.+|++++|+.||+||.|.++.+.+|+||++|++||++|+||||+++... ......
T Consensus 350 l~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~ 429 (499)
T PLN03234 350 LKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDF 429 (499)
T ss_pred HHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcc
Confidence 57999999999999997 479999999999999999999999999999999999779999999999965322 112356
Q ss_pred ceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCccc-----CCCcceeeecCCCceEEEEEC
Q 040765 78 SFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIH-----APTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 78 ~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~-----~~~~~~~~~p~~~~~v~~~~r 141 (141)
.++|||.|+|+|+|+++|++|++++++.|+++|++++.++... ....+.+..|++.+.+.+++|
T Consensus 430 ~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 430 ELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred eEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 7999999999999999999999999999999999999875321 113356667888888888875
No 15
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=3.4e-37 Score=241.33 Aligned_cols=140 Identities=22% Similarity=0.422 Sum_probs=121.6
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCC---Cc
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASK---NQ 76 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~---~~ 76 (141)
|+|||+||||++|+++. ++|.+.+|+.++|+.||+|+.|.++.+++|+|+++| +||++|+||||+++...... ..
T Consensus 351 l~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~ 429 (504)
T PLN00110 351 LQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW-ENPEEFRPERFLSEKNAKIDPRGND 429 (504)
T ss_pred HHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCChhhc-CCcccCCcccccCCCCcccccCCCe
Confidence 47999999999999997 789999999999999999999999999999999999 89999999999964322111 23
Q ss_pred cceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccC--CCcceeeecCCCceEEEEEC
Q 040765 77 ISFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHA--PTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 77 ~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~--~~~~~~~~p~~~~~v~~~~r 141 (141)
..++|||.|+|.|+|++||.+|++++++.|+++|++++.++.... .....++.|.+++.+++++|
T Consensus 430 ~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 496 (504)
T PLN00110 430 FELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPR 496 (504)
T ss_pred eeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccC
Confidence 579999999999999999999999999999999999987764322 23456778999999999886
No 16
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=4.6e-37 Score=239.14 Aligned_cols=134 Identities=27% Similarity=0.485 Sum_probs=117.9
Q ss_pred CchhhhhhhcCCCCCCC-ceeecccccee-cCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccc
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKL-GEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQIS 78 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~ 78 (141)
|+|||+|+||+||+++. ++|.+.+|+++ +|+.||+|+.|.++.+++|+||++| +||++|+||||++.. .+..
T Consensus 345 l~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~-~dP~~F~PeRwl~~~-----~~~~ 418 (482)
T PTZ00404 345 TVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYF-ENPEQFDPSRFLNPD-----SNDA 418 (482)
T ss_pred HHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCcccc-CCccccCccccCCCC-----CCCc
Confidence 57999999999999996 78999999999 9999999999999999999999999 999999999998642 3568
Q ss_pred eeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCccc--CCCcceeeecCCCceEEEEEC
Q 040765 79 FFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIH--APTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 79 ~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~--~~~~~~~~~p~~~~~v~~~~r 141 (141)
++|||.|+|.|+|+++|++|++++++.|+++|+++..++... ....+.++.| ++++|.+++|
T Consensus 419 ~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~R 482 (482)
T PTZ00404 419 FMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLTLKP-NKFKVLLEKR 482 (482)
T ss_pred eeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcccccceeecC-CCceeeeecC
Confidence 999999999999999999999999999999999998765422 1233455664 5899999987
No 17
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=7.5e-37 Score=239.16 Aligned_cols=118 Identities=28% Similarity=0.535 Sum_probs=107.2
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|+|||+|+||++|+++. +.|.+.+|+.++|+.||+||.|.++++++||||++||+||++|+||||++++.+.......|
T Consensus 353 l~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~ 432 (502)
T PLN02966 353 FRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEF 432 (502)
T ss_pred HHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCc
Confidence 57999999999999997 68999999999999999999999999999999999988999999999996543222345689
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCc
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTY 118 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~ 118 (141)
+|||.|+|+|+|++||.+|++++++.|+++|++++.++.
T Consensus 433 ~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~ 471 (502)
T PLN02966 433 IPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGM 471 (502)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCC
Confidence 999999999999999999999999999999999987764
No 18
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=6.7e-37 Score=240.13 Aligned_cols=140 Identities=25% Similarity=0.405 Sum_probs=116.1
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccC-CCCccce
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKA-SKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~-~~~~~~~ 79 (141)
|+|||+|+||++|+++...|++.+|++++|+.||||+.|.++.+++|+|+++| +||++|+||||++++... ......|
T Consensus 366 l~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~ 444 (516)
T PLN02183 366 LKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDKNSW-EDPDTFKPSRFLKPGVPDFKGSHFEF 444 (516)
T ss_pred HHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCcccc-CCccccCchhhCCCCCccccCCccee
Confidence 57999999999999999889999999999999999999999999999999999 899999999999754321 1245689
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCC-----CcceeeecCCCceEEEEEC
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAP-----TRGATVYPQHGANIILHKI 141 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~-----~~~~~~~p~~~~~v~~~~r 141 (141)
+|||.|+|+|+|++||.+|+++++|.|+++|++++.++....+ ..+.+..+...+.+.+++|
T Consensus 445 lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 445 IPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred cCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 9999999999999999999999999999999999876532211 1123332344666666665
No 19
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7e-37 Score=237.63 Aligned_cols=115 Identities=34% Similarity=0.644 Sum_probs=107.4
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|+|+|+|++|+||++|. ++|.+++|+.++||.||+||.|+++.|++|+||++| +||++|+||||++++ +.......+
T Consensus 348 L~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw-~dP~eF~PERFl~~~-d~~~~~~~~ 425 (489)
T KOG0156|consen 348 LKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVW-EDPEEFKPERFLDSN-DGKGLDFKL 425 (489)
T ss_pred HHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccC-CCccccChhhhcCCc-cccCCceEe
Confidence 58999999999999996 799999999999999999999999999999999999 899999999999874 222367889
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCC
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPT 117 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~ 117 (141)
+|||.|+|.|+|+.+|.+++.++++.|+++|+|++..+
T Consensus 426 iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~ 463 (489)
T KOG0156|consen 426 IPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGG 463 (489)
T ss_pred cCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCC
Confidence 99999999999999999999999999999999999866
No 20
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=1.8e-36 Score=236.91 Aligned_cols=140 Identities=26% Similarity=0.447 Sum_probs=117.9
Q ss_pred CchhhhhhhcCCCCCCCc-eeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCccc--CCCCcc
Q 040765 1 VSQILYEVLRLYSPAPLL-TRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSK--ASKNQI 77 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~-~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~--~~~~~~ 77 (141)
|+|||+|+||++|+++.. .|.+.+|++++|+.||+||.|.++.+++|+||++| +||++|+||||++++.. ......
T Consensus 355 l~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd~~~~-~~P~~F~PeRwl~~~~~~~~~~~~~ 433 (503)
T PLN02394 355 LQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANNPELW-KNPEEFRPERFLEEEAKVEANGNDF 433 (503)
T ss_pred HHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCCcccC-CCccccCccccCCCCCcccccCCCC
Confidence 579999999999999974 68888999999999999999999999999999999 89999999999864321 112356
Q ss_pred ceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcc-cCCC--c-ceeeecCCCceEEEEEC
Q 040765 78 SFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYI-HAPT--R-GATVYPQHGANIILHKI 141 (141)
Q Consensus 78 ~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~-~~~~--~-~~~~~p~~~~~v~~~~r 141 (141)
.++|||.|+|+|+|+++|.+|++++++.|+++|++++.++.. .... . ++.........+++.+|
T Consensus 434 ~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 501 (503)
T PLN02394 434 RFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPR 501 (503)
T ss_pred ceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCCCceEEeecC
Confidence 799999999999999999999999999999999999876642 2222 2 24553455889999887
No 21
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=2.5e-36 Score=234.35 Aligned_cols=139 Identities=29% Similarity=0.478 Sum_probs=121.9
Q ss_pred CchhhhhhhcCCCCCCCc-eeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccce
Q 040765 1 VSQILYEVLRLYSPAPLL-TRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISF 79 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~-~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~ 79 (141)
|+|||+|+||++|+++.. +|.+.+|++++|+.||+|+.|+++.+++|+|+++| +||++|+|+||++++.. ......+
T Consensus 323 l~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~~~~-~~p~~F~PeR~~~~~~~-~~~~~~~ 400 (466)
T PLN02655 323 LNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDKKRW-ENPEEWDPERFLGEKYE-SADMYKT 400 (466)
T ss_pred HHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCcccC-CChhccCccccCCCCcc-cCCcccc
Confidence 479999999999999875 79999999999999999999999999999999999 89999999999975322 1234689
Q ss_pred eeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcc-cCCCcceeeecCCCceEEEEEC
Q 040765 80 FSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYI-HAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 80 ~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~p~~~~~v~~~~r 141 (141)
+|||.|+|.|+|++||..|++++++.|+++|++++.++.. .....+.+..+++++.+++++|
T Consensus 401 ~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 463 (466)
T PLN02655 401 MAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLKPR 463 (466)
T ss_pred cCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEeec
Confidence 9999999999999999999999999999999999876532 3334467788999999999876
No 22
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=2.8e-36 Score=234.56 Aligned_cols=137 Identities=25% Similarity=0.366 Sum_probs=121.9
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCcccee
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFF 80 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~ 80 (141)
|+|+++|+||++|+++.+.|++.+|++++|+.||+|+.|.++.+.+|+|+++| +||++|+||||+++... ......++
T Consensus 332 l~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~F~PeRfl~~~~~-~~~~~~~l 409 (472)
T PLN02987 332 TQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYF-KDARTFNPWRWQSNSGT-TVPSNVFT 409 (472)
T ss_pred HHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhhCCcccC-CCccccCcccCCCCCCC-CCCCcceE
Confidence 46999999999999988889999999999999999999999999999999999 89999999999975322 12346799
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 81 SFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 81 ~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
|||.|+|.|+|+++|.+|++++++.|+++|++++.++....+ ..++.|.+++++++++|
T Consensus 410 ~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~--~~~~~p~~~~~~~~~~r 468 (472)
T PLN02987 410 PFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDKLVF--FPTTRTQKRYPINVKRR 468 (472)
T ss_pred CCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCceee--cccccCCCCceEEEEec
Confidence 999999999999999999999999999999999987654322 45889999999999987
No 23
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=3.9e-36 Score=237.13 Aligned_cols=139 Identities=22% Similarity=0.375 Sum_probs=116.2
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccC--CCCcc
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKA--SKNQI 77 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~--~~~~~ 77 (141)
|+|||+|+||++|+++. ++|.+.+|+.++||.||||+.|+++.+++|+||++| +||++|+||||++++... ...+.
T Consensus 389 l~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~ 467 (543)
T PLN02971 389 VKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRNPKVW-SDPLSFKPERHLNECSEVTLTENDL 467 (543)
T ss_pred HHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCChhhC-CCccccCcccCCCCCccccccCCCC
Confidence 47999999999999987 789999999999999999999999999999999999 899999999999653221 12456
Q ss_pred ceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCccc---CCCcceeeecCCCceEEEEEC
Q 040765 78 SFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIH---APTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 78 ~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~---~~~~~~~~~p~~~~~v~~~~r 141 (141)
.|+|||.|+|.|+|++||.+|++++++.|+++|++++.++... ....+ ++.-.+.+.+.+++|
T Consensus 468 ~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 468 RFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSH-DMFLSKPLVMVGELR 533 (543)
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcC-cccccccceeeeeec
Confidence 7999999999999999999999999999999999998764311 11223 442334778888776
No 24
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=6.2e-36 Score=233.41 Aligned_cols=140 Identities=31% Similarity=0.600 Sum_probs=118.5
Q ss_pred CchhhhhhhcCCCCCCCcee-eccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCccc--CCCCcc
Q 040765 1 VSQILYEVLRLYSPAPLLTR-ANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSK--ASKNQI 77 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r-~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~--~~~~~~ 77 (141)
|+|||+||||++|+++...| .+.+|+.++|+.||+|+.|.++.+++|+||++| +||++|+||||+.++.. ....+.
T Consensus 339 l~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeRwl~~~~~~~~~~~~~ 417 (489)
T PLN02936 339 LTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVW-ERAEEFVPERFDLDGPVPNETNTDF 417 (489)
T ss_pred HHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhC-CCccccCccccCCCCCCccccCCCc
Confidence 57999999999999887444 456677779999999999999999999999999 79999999999964321 112345
Q ss_pred ceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 78 SFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 78 ~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
.++|||.|+|.|+|++||++|++++++.|+++|+++++++.........+..|.++++|++++|
T Consensus 418 ~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~R 481 (489)
T PLN02936 418 RYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQDIVMTTGATIHTTNGLYMTVSRR 481 (489)
T ss_pred ceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCccceecceEEeeCCCeEEEEEee
Confidence 8999999999999999999999999999999999999876433333356778999999999987
No 25
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=5.5e-36 Score=235.04 Aligned_cols=140 Identities=26% Similarity=0.452 Sum_probs=118.5
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccC----CCC
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKA----SKN 75 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~----~~~ 75 (141)
|+|||+|+||++|+++. ++|.+.+|++++|+.||+|+.|.++.+++|+||++| +||++|+||||++++... ...
T Consensus 359 l~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d~~~~-~dp~~F~PeRfl~~~~~~~~~~~~~ 437 (517)
T PLN02687 359 LQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQW-PDPLEFRPDRFLPGGEHAGVDVKGS 437 (517)
T ss_pred HHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCCcccC-CCcccCCchhcCCCCCccccccCCC
Confidence 57999999999999996 789999999999999999999999999999999999 899999999999643211 123
Q ss_pred ccceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCC-----CcceeeecCCCceEEEEEC
Q 040765 76 QISFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAP-----TRGATVYPQHGANIILHKI 141 (141)
Q Consensus 76 ~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~-----~~~~~~~p~~~~~v~~~~r 141 (141)
+..++|||.|+|.|+|++||.+|++++++.|+++|++++.++..... .......+..++++++++|
T Consensus 438 ~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R 508 (517)
T PLN02687 438 DFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMVHPRPR 508 (517)
T ss_pred ceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEEeeccC
Confidence 55799999999999999999999999999999999999876532111 2234455666788888876
No 26
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=1.1e-35 Score=234.07 Aligned_cols=139 Identities=19% Similarity=0.339 Sum_probs=117.5
Q ss_pred CchhhhhhhcCCCCCCCc-eeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccC-----CC
Q 040765 1 VSQILYEVLRLYSPAPLL-TRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKA-----SK 74 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~-~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~-----~~ 74 (141)
|+|||+|+||++|+++.. .|.+.+|+.++|+.||+|+.|.++.+++|+||++| +||++|+||||++++... ..
T Consensus 376 l~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~dp~~~-~~p~~F~PeRfl~~~~~~~~~~~~~ 454 (534)
T PLN03018 376 LKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRNPKIW-KDPLVYEPERHLQGDGITKEVTLVE 454 (534)
T ss_pred HHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCCcccC-CCccccCCccCCCCCCccccccccC
Confidence 579999999999999975 68899999999999999999999999999999999 899999999999643211 12
Q ss_pred CccceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCc-ccC--CCcceeeecCCCceEEEEEC
Q 040765 75 NQISFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTY-IHA--PTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 75 ~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~-~~~--~~~~~~~~p~~~~~v~~~~r 141 (141)
.+..++|||.|+|.|+|+++|.+|++++++.|+++|++++.++. ... ...+.+. ..++++|++++|
T Consensus 455 ~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~-~p~~~~v~~~~R 523 (534)
T PLN03018 455 TEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLL-MAKPLLLSVEPR 523 (534)
T ss_pred CCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCcccccccee-cCCCeEEEEEec
Confidence 35679999999999999999999999999999999999987653 211 1223344 446999999987
No 27
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=5.2e-36 Score=232.48 Aligned_cols=133 Identities=26% Similarity=0.458 Sum_probs=118.7
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCcccee
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFF 80 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~ 80 (141)
|+|||+|+||++|+++...|.+.+|+.++|+.||+|+.|.++.+++|+|+++| +||++|+||||++. ..+..++
T Consensus 329 l~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~rd~~~~-~dP~~F~PeRfl~~-----~~~~~~l 402 (463)
T PLN02196 329 TSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIHHSADIF-SDPGKFDPSRFEVA-----PKPNTFM 402 (463)
T ss_pred HHHHHHHHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhcCCchhc-CCcCccChhhhcCC-----CCCCccc
Confidence 47999999999999998889999999999999999999999999999999999 89999999999963 2346799
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEE
Q 040765 81 SFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHK 140 (141)
Q Consensus 81 ~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 140 (141)
|||.|+|.|+|+++|++|++++++.|+++|++++.+++... ....+..|+++++|++++
T Consensus 403 pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~ 461 (463)
T PLN02196 403 PFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSNGI-QYGPFALPQNGLPIALSR 461 (463)
T ss_pred CcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCCce-EEcccccCCCCceEEEec
Confidence 99999999999999999999999999999999988764322 234456799999999875
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=7.4e-36 Score=232.43 Aligned_cols=135 Identities=24% Similarity=0.371 Sum_probs=119.2
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCcccee
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFF 80 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~ 80 (141)
|+|+|+|+||++|+++...|.+.+|++++|+.||+|+.|.++.+++|+|+++| +||++|+|+||++.. ..+..++
T Consensus 353 l~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~PeR~~~~~----~~~~~~~ 427 (490)
T PLN02302 353 LSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVY-PNPKEFDPSRWDNYT----PKAGTFL 427 (490)
T ss_pred HHHHHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHhcCCcccC-CCccccChhhcCCCC----CCCCCcc
Confidence 46999999999999998889999999999999999999999999999999999 899999999999642 2456799
Q ss_pred eecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 81 SFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 81 ~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
|||.|+|.|+|+++|.+|++++++.|+++|++++.++... ........|.+++++++++|
T Consensus 428 pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~ 487 (490)
T PLN02302 428 PFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGCK-VMYLPHPRPKDNCLARITKV 487 (490)
T ss_pred CCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCCc-ceeCCCCCCCCCceEEEEec
Confidence 9999999999999999999999999999999998754321 12223478999999999876
No 29
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=3.3e-35 Score=230.37 Aligned_cols=140 Identities=16% Similarity=0.312 Sum_probs=118.2
Q ss_pred CchhhhhhhcCCCCCCC-ceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCccc--C--CCC
Q 040765 1 VSQILYEVLRLYSPAPL-LTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSK--A--SKN 75 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~--~--~~~ 75 (141)
|+|||+|++|++|+++. ++|.+.+|+.++|+.||+|+.|.++.+++|+||++| +||++|+||||..+... . ...
T Consensus 358 l~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d~~~~-~dP~~F~PeRf~~~~~~~~~~~~~~ 436 (514)
T PLN03112 358 LRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRNTKIW-DDVEEFRPERHWPAEGSRVEISHGP 436 (514)
T ss_pred HHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCCcccC-CChhhcCCcccCCCCCCccccccCC
Confidence 57999999999999996 689999999999999999999999999999999999 89999999998653211 1 112
Q ss_pred ccceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccC-----CCcceeeecCCCceEEEEEC
Q 040765 76 QISFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHA-----PTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 76 ~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~-----~~~~~~~~p~~~~~v~~~~r 141 (141)
...++|||.|+|+|+|++||.+|++++++.|+++|++++.++.... ......+.+.+++++.+++|
T Consensus 437 ~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 507 (514)
T PLN03112 437 DFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAVATPR 507 (514)
T ss_pred CcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEEEeecC
Confidence 4579999999999999999999999999999999999987543211 12245556678999999987
No 30
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3e-34 Score=215.89 Aligned_cols=140 Identities=27% Similarity=0.462 Sum_probs=122.1
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceecC----eEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCC---
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLGE----IVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKAS--- 73 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g----~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~--- 73 (141)
|++||+|||||+||.+.+.|.+.+|.++.+ |.||+|..|.++...+|+||++| ++|+.|+|+||++++.+..
T Consensus 336 L~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif-~dp~~Fk~dRf~~~~~~~~k~g 414 (486)
T KOG0684|consen 336 LDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIF-PDPEDFKPDRFLKDNGESKKNG 414 (486)
T ss_pred HHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCcccc-CChhhCChhhccCCCccccccc
Confidence 578999999999999999999999999866 99999999999999999999999 8999999999997654431
Q ss_pred -CCccceeeecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCC-CcceeeecCCCceEEEEEC
Q 040765 74 -KNQISFFSFGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAP-TRGATVYPQHGANIILHKI 141 (141)
Q Consensus 74 -~~~~~~~~Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~-~~~~~~~p~~~~~v~~~~r 141 (141)
.-.+.+||||+|.+.|+|+.||.+|++.++..+|++||+++.+++.+.. ....+..|.+++.++.++|
T Consensus 415 ~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~~~P~~d~s~~v~~P~g~v~irYK~R 484 (486)
T KOG0684|consen 415 EKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDGPFPEVDYSRMVMQPEGDVRIRYKRR 484 (486)
T ss_pred ccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCCCCCCCCHHHhhcCCCCCceEEEeec
Confidence 1234569999999999999999999999999999999999998633222 3356889999999999876
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=3e-32 Score=208.90 Aligned_cols=128 Identities=34% Similarity=0.620 Sum_probs=114.7
Q ss_pred chhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCccceee
Q 040765 2 SQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQISFFS 81 (141)
Q Consensus 2 ~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~ 81 (141)
+++++|+||+||+++.+.|.+.+|++++|+.||+|+.|++++++.||||++| ++|++|+|+||. ..++|
T Consensus 283 ~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f-~~P~~F~p~R~~----------~~~l~ 351 (411)
T COG2124 283 EAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVF-PDPDEFDPERFN----------NAHLP 351 (411)
T ss_pred HHHHHHHHHhCCchhccceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhC-CChhhcCCCCCC----------CCCcC
Confidence 5899999999999999889999999999999999999999999999999999 899999999996 46899
Q ss_pred ecCCCCCchhHHHHHHHHHHHHHHHHhhceeEeCCCcccCCCcceeeecCCCceEEEEEC
Q 040765 82 FGWGPRICIGQNFALLESKLALAMILQKFTFQLSPTYIHAPTRGATVYPQHGANIILHKI 141 (141)
Q Consensus 82 Fg~G~r~C~G~~lA~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~r 141 (141)
||+|+|.|+|..||++|++++++.++++|++....+ ........+..|..+..+.++.+
T Consensus 352 FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~-~~~~~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 352 FGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE-PPPLVRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred CCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC-CCCccccccccCCCcceeeeecC
Confidence 999999999999999999999999999999987665 23334456677888888877653
No 32
>PLN02648 allene oxide synthase
Probab=99.96 E-value=5.8e-30 Score=199.33 Aligned_cols=116 Identities=22% Similarity=0.435 Sum_probs=100.5
Q ss_pred CchhhhhhhcCCCCCCCceeeccccceec----CeEeCCCCEEEEcceecccCCCCcCCCCCCcccCCCCCCcccCCCCc
Q 040765 1 VSQILYEVLRLYSPAPLLTRANVKEIKLG----EIVIPPGVSLSLPIMLVHHDHEYWGDDAKKFNPERFSEGVSKASKNQ 76 (141)
Q Consensus 1 l~a~i~E~lRl~p~~~~~~r~~~~~~~i~----g~~ip~g~~v~~~~~~~~~d~~~~~~~p~~F~P~R~l~~~~~~~~~~ 76 (141)
|++||+|+||++|+++.+.|++.+|++++ ||.||+|+.|+++.+.+|+||++| +||++|+|+||+++... ..
T Consensus 336 l~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~~-~dP~~F~PeRf~~~~~~---~~ 411 (480)
T PLN02648 336 VKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKVF-DRPEEFVPDRFMGEEGE---KL 411 (480)
T ss_pred HHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCcccC-CCcceeCCCCCCCCCcc---cc
Confidence 57999999999999999889999999996 799999999999999999999999 99999999999864321 12
Q ss_pred cceeee---------cCCCCCchhHHHHHHHHHHHHHHHHhhce-eEeCCCccc
Q 040765 77 ISFFSF---------GWGPRICIGQNFALLESKLALAMILQKFT-FQLSPTYIH 120 (141)
Q Consensus 77 ~~~~~F---------g~G~r~C~G~~lA~~~~~~~l~~ll~~f~-~~~~~~~~~ 120 (141)
..+++| |+|+|.|+|++||++|++++++.|+++|+ +++.++...
T Consensus 412 ~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~~~ 465 (480)
T PLN02648 412 LKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDTSG 465 (480)
T ss_pred ccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCccc
Confidence 234444 67789999999999999999999999998 998776543
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=83.51 E-value=0.78 Score=32.30 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=25.6
Q ss_pred chhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEE
Q 040765 2 SQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLS 40 (141)
Q Consensus 2 ~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~ 40 (141)
.|||.|+.-+... ..+.=+..+|+.++|..||+|+.+.
T Consensus 56 ~A~V~~~qtv~~G-s~vrlRLle~i~i~g~~IPkgt~l~ 93 (200)
T PF12508_consen 56 RAVVDGTQTVVDG-SRVRLRLLEDIQIGGILIPKGTYLY 93 (200)
T ss_pred EEEEecceEEeCC-CEEEEEEcCceEECCEEeCCCCEEE
Confidence 4677777655432 2232256789999999999999553
No 34
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=66.94 E-value=3.9 Score=32.03 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=31.6
Q ss_pred chhhhhhhcCCCCCCCceeeccccceecCeEeCCCCEEE-----------EcceecccCCCCc
Q 040765 2 SQILYEVLRLYSPAPLLTRANVKEIKLGEIVIPPGVSLS-----------LPIMLVHHDHEYW 53 (141)
Q Consensus 2 ~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~-----------~~~~~~~~d~~~~ 53 (141)
.|||.|+.-+.- ...+-=+..+|+.++|..||+||.+. +.+..+..+..++
T Consensus 259 ~A~V~~~qtv~~-G~~vrlRLle~~~v~~~~ipkgt~l~g~~~~~g~R~~i~I~si~~~g~ii 320 (410)
T TIGR03779 259 RACVHETQTVVD-GSAVKLRLLEPIQAGDLVIPKGTVLYGTAKIQGERLDIKISSIEYNGTIL 320 (410)
T ss_pred EEEEcCceEEec-CCEEEEEEcCceeeCCEEecCCCEEEEEeeeccceEEEEEEEEEECCEEE
Confidence 466777665543 12232245688999999999999653 4455555555444
No 35
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=66.81 E-value=11 Score=25.27 Aligned_cols=41 Identities=20% Similarity=0.518 Sum_probs=29.1
Q ss_pred ccccceecCeEeCCCCEEEEcce-------ecccCCCCcCCCCCCcccCC
Q 040765 22 NVKEIKLGEIVIPPGVSLSLPIM-------LVHHDHEYWGDDAKKFNPER 64 (141)
Q Consensus 22 ~~~~~~i~g~~ip~g~~v~~~~~-------~~~~d~~~~~~~p~~F~P~R 64 (141)
..+|+.++|..||+|+.-+..+. .++.+...||. ..++|+.
T Consensus 52 f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~--~~Y~~~~ 99 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA--YNYDPSK 99 (145)
T ss_pred ECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc--cccCchh
Confidence 35789999999999997665432 35677888863 4555553
No 36
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=64.71 E-value=6.1 Score=26.16 Aligned_cols=23 Identities=13% Similarity=0.408 Sum_probs=16.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhh
Q 040765 87 RICIGQNFALLESKLALAMILQK 109 (141)
Q Consensus 87 r~C~G~~lA~~~~~~~l~~ll~~ 109 (141)
-+|.|+.||..++-.++.+|+..
T Consensus 18 yN~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS
T ss_pred ecccchHHHHHHHHHHHHHHhcC
Confidence 37999999999999999999864
No 37
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=63.48 E-value=5.3 Score=22.38 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=6.4
Q ss_pred ccCCCCCC
Q 040765 61 NPERFSEG 68 (141)
Q Consensus 61 ~P~R~l~~ 68 (141)
||||||.-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 79999963
No 38
>KOG3302 consensus TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=58.09 E-value=5.1 Score=28.05 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=22.2
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchh
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIG 91 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G 91 (141)
.+|+|.||-.---....+.....-|++|+=.|-|
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg 83 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG 83 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEec
Confidence 5788999852111111244556789999999997
No 39
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=47.48 E-value=7.8 Score=26.68 Aligned_cols=35 Identities=26% Similarity=0.557 Sum_probs=23.6
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchhH
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIGQ 92 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 92 (141)
-+|+|+||-.---.-..+....+-|+.|+=.|-|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 57888888421111123456788999999999985
No 40
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=46.09 E-value=27 Score=23.99 Aligned_cols=55 Identities=25% Similarity=0.431 Sum_probs=30.9
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchh-HHHH--HHHHHHHHHHHHhhceeE
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIG-QNFA--LLESKLALAMILQKFTFQ 113 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G-~~lA--~~~~~~~l~~ll~~f~~~ 113 (141)
-+|+|++|-.---....+....+-|+.|+=.|-| +... ..-++. ++.+|+++.+.
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~-~~~~L~~~g~~ 86 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARK-YARILQKLGFP 86 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHH-HHHHHHHcCCC
Confidence 4678888742111112345678899999999998 2232 222322 33445555543
No 41
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=45.50 E-value=9.1 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.525 Sum_probs=22.9
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchhH
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIGQ 92 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 92 (141)
.+|+|++|-.---.-..+....+-|..|+=.|-|.
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGa 69 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGA 69 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEecc
Confidence 46777777321011123556788999999999984
No 42
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=44.96 E-value=17 Score=25.03 Aligned_cols=34 Identities=24% Similarity=0.598 Sum_probs=22.2
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchh
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIG 91 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G 91 (141)
.+|+|++|-.---....+....+-|+.|+=.|-|
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTG 62 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTG 62 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEe
Confidence 5778887732111111245567899999999998
No 43
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=43.07 E-value=11 Score=20.74 Aligned_cols=10 Identities=50% Similarity=0.999 Sum_probs=8.7
Q ss_pred eecCCCCCch
Q 040765 81 SFGWGPRICI 90 (141)
Q Consensus 81 ~Fg~G~r~C~ 90 (141)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999886
No 44
>PRK06789 flagellar motor switch protein; Validated
Probab=42.37 E-value=28 Score=20.47 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=27.9
Q ss_pred hhhhhhcCCCCCCC-ceeecccc--ceecCeEeCCCCEEEEc
Q 040765 4 ILYEVLRLYSPAPL-LTRANVKE--IKLGEIVIPPGVSLSLP 42 (141)
Q Consensus 4 ~i~E~lRl~p~~~~-~~r~~~~~--~~i~g~~ip~g~~v~~~ 42 (141)
-++|.+.+.+.... +-+.+.++ +.++|..|.+|..|.++
T Consensus 21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN 62 (74)
T ss_pred EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence 46788888876543 45555554 45589999999998875
No 45
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=36.95 E-value=26 Score=21.15 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhceeEeCCC
Q 040765 97 LESKLALAMILQKFTFQLSPT 117 (141)
Q Consensus 97 ~~~~~~l~~ll~~f~~~~~~~ 117 (141)
.-|+-++..+|+-|||.+++-
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHHhccCCceeeec
Confidence 346778999999999998764
No 46
>PRK00394 transcription factor; Reviewed
Probab=36.51 E-value=15 Score=25.36 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=22.8
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchh
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIG 91 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G 91 (141)
-+|+|+||-.---.-..+....+-|..|+=.|-|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 4788888742111112345678899999999998
No 47
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=36.42 E-value=26 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.449 Sum_probs=20.7
Q ss_pred ccccceecCeEeCCCCEEEEcceecccCCCCc
Q 040765 22 NVKEIKLGEIVIPPGVSLSLPIMLVHHDHEYW 53 (141)
Q Consensus 22 ~~~~~~i~g~~ip~g~~v~~~~~~~~~d~~~~ 53 (141)
+..|..++|-.||+|++++.- --.|+++|
T Consensus 73 ~~~d~~~~g~~i~~GtWv~~~---k~~ddelW 101 (122)
T PF14550_consen 73 APEDMEIGGETIPKGTWVVGV---KITDDELW 101 (122)
T ss_pred cCCCcccCCeeecceEEEEEE---EecCHHHH
Confidence 456888899999999998642 12345666
No 48
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=34.92 E-value=16 Score=17.31 Aligned_cols=6 Identities=67% Similarity=1.398 Sum_probs=3.4
Q ss_pred cccCCC
Q 040765 60 FNPERF 65 (141)
Q Consensus 60 F~P~R~ 65 (141)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 456665
No 49
>PLN00062 TATA-box-binding protein; Provisional
Probab=34.17 E-value=15 Score=25.37 Aligned_cols=55 Identities=24% Similarity=0.435 Sum_probs=30.5
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchhH-HHHHHH-HHHHHHHHHhhcee
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIGQ-NFALLE-SKLALAMILQKFTF 112 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~-~lA~~~-~~~~l~~ll~~f~~ 112 (141)
.+|+|++|-.---....+....+-|+.|+=.|-|- ...... ..--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 57888887421111113456788999999999983 332221 11223455655544
No 50
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=32.44 E-value=12 Score=22.37 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCcccCCCCCCcccCCCCccceeeecCCCCCchhH
Q 040765 58 KKFNPERFSEGVSKASKNQISFFSFGWGPRICIGQ 92 (141)
Q Consensus 58 ~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C~G~ 92 (141)
.+|+|++|-.---....+....+-|..|+=.|.|-
T Consensus 31 ~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 31 VEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 36777776321011113456788899999999984
No 51
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=32.39 E-value=27 Score=24.89 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=19.1
Q ss_pred EEEcceec-ccCCCCcCCCCCCcccCC
Q 040765 39 LSLPIMLV-HHDHEYWGDDAKKFNPER 64 (141)
Q Consensus 39 v~~~~~~~-~~d~~~~~~~p~~F~P~R 64 (141)
+-++-|.- +.|+.+| .|...|+|.|
T Consensus 186 LGiPGW~~~n~~~~FY-~d~~~FRp~R 211 (212)
T PF11227_consen 186 LGIPGWWPDNEDPAFY-DDTDVFRPGR 211 (212)
T ss_pred cCCCCCCCCCCCcccc-cCccccCCCC
Confidence 33454544 8899999 8999999987
No 52
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=27.03 E-value=79 Score=20.30 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=16.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHh
Q 040765 86 PRICIGQNFALLESKLALAMILQ 108 (141)
Q Consensus 86 ~r~C~G~~lA~~~~~~~l~~ll~ 108 (141)
.|.|+|..++....+.++..|-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 37899999999988888877644
No 53
>PHA03162 hypothetical protein; Provisional
Probab=25.28 E-value=43 Score=21.95 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=16.8
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHH
Q 040765 83 GWGPRICIGQNFALLESKLALAMI 106 (141)
Q Consensus 83 g~G~r~C~G~~lA~~~~~~~l~~l 106 (141)
++|.+.||++...+-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999999877766665555443
No 54
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=23.04 E-value=37 Score=18.64 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=11.2
Q ss_pred eecCCCCCch--hHHHH
Q 040765 81 SFGWGPRICI--GQNFA 95 (141)
Q Consensus 81 ~Fg~G~r~C~--G~~lA 95 (141)
-||.|.|.|. |+.-+
T Consensus 11 ~yGkGsr~C~vCg~~~g 27 (54)
T PTZ00218 11 TYGKGSRQCRVCSNRHG 27 (54)
T ss_pred cCCCCCCeeecCCCcch
Confidence 4899999998 66443
No 55
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=22.85 E-value=22 Score=16.43 Aligned_cols=7 Identities=57% Similarity=1.227 Sum_probs=4.0
Q ss_pred cccCCCC
Q 040765 60 FNPERFS 66 (141)
Q Consensus 60 F~P~R~l 66 (141)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4566663
No 56
>PRK05933 type III secretion system protein; Validated
Probab=22.24 E-value=90 Score=24.00 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=28.8
Q ss_pred hhhhhhhcCCCCCCC-ceeec-c--ccceecCeEeCCCCEEEEc
Q 040765 3 QILYEVLRLYSPAPL-LTRAN-V--KEIKLGEIVIPPGVSLSLP 42 (141)
Q Consensus 3 a~i~E~lRl~p~~~~-~~r~~-~--~~~~i~g~~ip~g~~v~~~ 42 (141)
.-|+|.|+|.+.... +-|.+ . -|+.++|..|.+|..|.++
T Consensus 319 l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVd 362 (372)
T PRK05933 319 LSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALG 362 (372)
T ss_pred ccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEEC
Confidence 457899999876544 33443 2 3566799999999999876
No 57
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=21.28 E-value=76 Score=23.57 Aligned_cols=45 Identities=18% Similarity=0.254 Sum_probs=28.4
Q ss_pred cCCCCcCCCCCCcccCCCCCCcccCCCCccceeeecCCCCCc---h--hHHHHHHHHH
Q 040765 48 HDHEYWGDDAKKFNPERFSEGVSKASKNQISFFSFGWGPRIC---I--GQNFALLESK 100 (141)
Q Consensus 48 ~d~~~~~~~p~~F~P~R~l~~~~~~~~~~~~~~~Fg~G~r~C---~--G~~lA~~~~~ 100 (141)
.+|..|..++.+|--|| ...+.+|+|+|-|..-- + |...+..++.
T Consensus 152 lHp~~y~~~~~~fpYER--------rp~S~AyIp~~eGdfYy~Ga~~GG~~~~vl~l~ 201 (271)
T cd02515 152 LHPWWYGKPRKQFPYER--------RPSSAAYIPEGEGDFYYHGAVFGGSVEEVYRLT 201 (271)
T ss_pred cChhhhcCCCCCCCCcC--------CCCccccccCCCCCeEEeeeecCccHHHHHHHH
Confidence 34555556888887787 23567899998886532 2 5555555544
No 58
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=21.08 E-value=24 Score=20.20 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=8.3
Q ss_pred chhhhhhhcCC
Q 040765 2 SQILYEVLRLY 12 (141)
Q Consensus 2 ~a~i~E~lRl~ 12 (141)
+.+|+|++|+.
T Consensus 44 ~~~IkEA~RFk 54 (65)
T PF15300_consen 44 EMIIKEAARFK 54 (65)
T ss_pred HHHHHHHHHHH
Confidence 56788888863
Done!