Query 040769
Match_columns 257
No_of_seqs 316 out of 1635
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 18:50:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cra_A Homeobox protein HOX-B1 99.8 1E-20 3.4E-25 136.6 4.3 65 80-144 2-66 (70)
2 2cue_A Paired box protein PAX6 99.8 2E-20 7E-25 138.5 5.9 66 81-146 3-68 (80)
3 2dmu_A Homeobox protein goosec 99.8 1.7E-20 5.7E-25 135.4 5.1 65 80-144 2-66 (70)
4 2dmq_A LIM/homeobox protein LH 99.8 3.4E-20 1.1E-24 137.1 5.7 64 81-144 3-66 (80)
5 2e1o_A Homeobox protein PRH; D 99.8 3.4E-20 1.2E-24 133.8 5.4 64 81-144 3-66 (70)
6 2dms_A Homeobox protein OTX2; 99.8 2.8E-20 9.5E-25 137.7 5.0 65 80-144 2-66 (80)
7 2vi6_A Homeobox protein nanog; 99.8 1.4E-20 4.6E-25 132.8 3.1 61 84-144 2-62 (62)
8 1nk2_P Homeobox protein VND; h 99.8 4.5E-20 1.5E-24 135.7 5.9 67 81-147 5-71 (77)
9 2h1k_A IPF-1, pancreatic and d 99.8 2.2E-20 7.6E-25 132.2 4.0 61 84-144 2-62 (63)
10 2da2_A Alpha-fetoprotein enhan 99.8 2.4E-20 8.1E-25 134.5 4.2 65 80-144 2-66 (70)
11 2djn_A Homeobox protein DLX-5; 99.8 2.2E-20 7.6E-25 134.8 3.9 65 80-144 2-66 (70)
12 2da1_A Alpha-fetoprotein enhan 99.8 3.1E-20 1.1E-24 133.9 3.7 65 80-144 2-66 (70)
13 2dmt_A Homeobox protein BARH-l 99.8 4.8E-20 1.6E-24 136.5 4.7 64 81-144 13-76 (80)
14 1puf_A HOX-1.7, homeobox prote 99.8 1E-19 3.4E-24 133.8 6.3 66 81-146 9-74 (77)
15 2hdd_A Protein (engrailed home 99.8 4.8E-20 1.6E-24 129.5 3.6 58 85-142 3-60 (61)
16 2da3_A Alpha-fetoprotein enhan 99.8 4E-20 1.4E-24 136.5 3.3 64 81-144 13-76 (80)
17 1zq3_P PRD-4, homeotic bicoid 99.8 8.8E-20 3E-24 131.0 4.6 62 84-145 1-62 (68)
18 1ig7_A Homeotic protein MSX-1; 99.8 8.3E-20 2.8E-24 126.9 4.3 57 86-142 1-57 (58)
19 2kt0_A Nanog, homeobox protein 99.8 5.3E-20 1.8E-24 137.2 3.2 64 81-144 18-81 (84)
20 2l7z_A Homeobox protein HOX-A1 99.8 1.4E-19 4.9E-24 131.7 5.2 63 82-144 4-66 (73)
21 3a01_A Homeodomain-containing 99.8 7.5E-20 2.6E-24 139.3 3.8 66 81-146 13-78 (93)
22 2da4_A Hypothetical protein DK 99.8 6.7E-20 2.3E-24 135.6 3.1 64 81-144 4-71 (80)
23 1wh5_A ZF-HD homeobox family p 99.8 1.1E-19 3.7E-24 134.9 4.2 61 82-142 14-78 (80)
24 2da5_A Zinc fingers and homeob 99.8 1.5E-19 5.1E-24 132.4 4.8 60 85-144 7-66 (75)
25 1b8i_A Ultrabithorax, protein 99.8 7.6E-20 2.6E-24 135.8 3.1 62 83-144 18-79 (81)
26 1fjl_A Paired protein; DNA-bin 99.8 2.5E-19 8.4E-24 132.9 5.4 64 82-145 15-78 (81)
27 1jgg_A Segmentation protein EV 99.8 1.4E-19 4.8E-24 126.7 3.9 58 86-143 2-59 (60)
28 1yz8_P Pituitary homeobox 2; D 99.8 5.6E-20 1.9E-24 132.0 1.8 62 84-145 2-63 (68)
29 1ahd_P Antennapedia protein mu 99.8 1E-19 3.6E-24 130.7 3.3 60 85-144 2-61 (68)
30 1bw5_A ISL-1HD, insulin gene e 99.8 9.2E-20 3.1E-24 130.0 2.8 61 84-144 2-62 (66)
31 3rkq_A Homeobox protein NKX-2. 99.8 1.9E-19 6.5E-24 124.7 3.9 57 85-141 2-58 (58)
32 1wh7_A ZF-HD homeobox family p 99.8 1.7E-19 5.9E-24 133.8 3.7 61 81-142 13-78 (80)
33 1ftt_A TTF-1 HD, thyroid trans 99.8 2.5E-19 8.4E-24 128.7 4.1 60 85-144 2-61 (68)
34 2ecc_A Homeobox and leucine zi 99.8 3.2E-19 1.1E-23 130.9 4.6 58 87-144 5-62 (76)
35 2r5y_A Homeotic protein sex co 99.8 1.8E-19 6E-24 135.7 3.0 63 82-144 25-87 (88)
36 1uhs_A HOP, homeodomain only p 99.8 3.8E-19 1.3E-23 129.0 4.6 59 86-144 2-61 (72)
37 2m0c_A Homeobox protein arista 99.8 4.6E-19 1.6E-23 129.1 4.8 64 81-144 5-68 (75)
38 2hi3_A Homeodomain-only protei 99.8 4.8E-19 1.7E-23 128.8 4.9 59 86-144 3-62 (73)
39 3a02_A Homeobox protein arista 99.7 3.1E-19 1E-23 125.0 3.2 57 88-144 2-58 (60)
40 2cuf_A FLJ21616 protein; homeo 99.7 6.6E-19 2.2E-23 134.5 5.1 66 80-145 2-82 (95)
41 1akh_A Protein (mating-type pr 99.7 3.2E-19 1.1E-23 125.1 3.1 59 83-141 3-61 (61)
42 1b72_A Protein (homeobox prote 99.7 3.3E-19 1.1E-23 136.6 3.3 63 83-145 32-94 (97)
43 2k40_A Homeobox expressed in E 99.7 4.5E-19 1.5E-23 126.8 3.8 60 86-145 2-61 (67)
44 1x2n_A Homeobox protein pknox1 99.7 8.8E-19 3E-23 127.3 5.4 64 81-144 3-69 (73)
45 3a03_A T-cell leukemia homeobo 99.7 5.1E-19 1.7E-23 122.3 3.8 54 90-143 2-55 (56)
46 2dn0_A Zinc fingers and homeob 99.7 4.7E-19 1.6E-23 129.9 3.7 62 83-144 6-67 (76)
47 3nar_A ZHX1, zinc fingers and 99.7 5.5E-19 1.9E-23 135.2 4.1 65 82-146 22-86 (96)
48 2ly9_A Zinc fingers and homeob 99.7 1E-18 3.5E-23 127.2 4.3 61 84-144 5-65 (74)
49 2dmn_A Homeobox protein TGIF2L 99.7 2E-18 7E-23 128.7 4.7 64 81-144 3-69 (83)
50 1du6_A PBX1, homeobox protein 99.7 1.2E-18 4.3E-23 123.3 3.1 58 85-142 3-63 (64)
51 1puf_B PRE-B-cell leukemia tra 99.7 1E-18 3.5E-23 126.9 2.5 61 86-146 2-65 (73)
52 2ecb_A Zinc fingers and homeob 99.7 1.3E-18 4.5E-23 131.5 2.9 56 89-144 15-70 (89)
53 1k61_A Mating-type protein alp 99.7 2.3E-18 7.9E-23 120.4 3.7 56 88-143 1-59 (60)
54 1b72_B Protein (PBX1); homeodo 99.7 2.4E-18 8.1E-23 129.0 3.7 61 86-146 2-65 (87)
55 2cqx_A LAG1 longevity assuranc 99.7 1.1E-18 3.7E-23 126.9 1.5 59 85-143 8-67 (72)
56 2da6_A Hepatocyte nuclear fact 99.7 1.1E-17 3.7E-22 129.2 6.0 65 82-146 3-88 (102)
57 1wi3_A DNA-binding protein SAT 99.7 6.4E-18 2.2E-22 120.5 4.3 60 81-140 3-63 (71)
58 1mnm_C Protein (MAT alpha-2 tr 99.7 8.3E-18 2.8E-22 126.3 4.4 60 83-142 25-87 (87)
59 2dmp_A Zinc fingers and homeob 99.7 6.4E-18 2.2E-22 127.6 3.2 58 87-144 15-72 (89)
60 1le8_B Mating-type protein alp 99.7 8.1E-18 2.8E-22 125.4 3.7 59 86-144 3-64 (83)
61 1au7_A Protein PIT-1, GHF-1; c 99.7 5.8E-18 2E-22 138.9 2.8 62 82-143 84-145 (146)
62 3d1n_I POU domain, class 6, tr 99.7 1.3E-17 4.4E-22 137.4 4.5 62 81-142 89-150 (151)
63 3nau_A Zinc fingers and homeob 99.7 1.4E-17 4.8E-22 118.6 3.6 53 92-144 11-63 (66)
64 2e19_A Transcription factor 8; 99.7 1.4E-17 4.8E-22 118.4 3.4 54 89-142 7-60 (64)
65 2l9r_A Homeobox protein NKX-3. 99.7 7.4E-18 2.5E-22 121.6 1.9 54 91-144 10-63 (69)
66 1e3o_C Octamer-binding transcr 99.7 1.4E-17 4.8E-22 138.5 3.5 61 83-143 99-159 (160)
67 1x2m_A LAG1 longevity assuranc 99.7 7.7E-18 2.6E-22 119.6 1.3 49 94-142 9-58 (64)
68 2xsd_C POU domain, class 3, tr 99.7 1.3E-17 4.6E-22 139.3 3.0 64 82-145 96-159 (164)
69 1lfb_A Liver transcription fac 99.7 1.5E-17 5E-22 128.1 1.8 65 82-146 6-91 (99)
70 3l1p_A POU domain, class 5, tr 99.6 4.6E-17 1.6E-21 134.8 3.1 61 83-143 94-154 (155)
71 2d5v_A Hepatocyte nuclear fact 99.6 1.1E-16 3.8E-21 133.4 3.0 64 82-145 94-157 (164)
72 3k2a_A Homeobox protein MEIS2; 99.6 1.8E-16 6.3E-21 113.5 2.4 59 90-148 3-64 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 6.6E-15 2.2E-19 126.0 0.8 61 82-142 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.4 3.7E-14 1.3E-18 101.6 2.8 46 94-139 14-59 (71)
75 2lk2_A Homeobox protein TGIF1; 99.4 7.5E-14 2.6E-18 105.1 4.1 54 91-144 11-67 (89)
76 2h8r_A Hepatocyte nuclear fact 99.3 2.7E-13 9.2E-18 117.6 3.3 61 81-141 138-219 (221)
77 1mh3_A Maltose binding-A1 home 99.3 2.3E-13 7.8E-18 126.0 1.0 56 86-141 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.9 3E-10 1E-14 71.7 0.7 22 127-148 1-22 (37)
79 2ys9_A Homeobox and leucine zi 93.4 0.029 9.8E-07 39.8 1.6 39 97-135 18-56 (70)
80 2glo_A Brinker CG9653-PA; prot 78.1 0.93 3.2E-05 30.0 1.7 45 89-134 3-47 (59)
81 2jn6_A Protein CGL2762, transp 77.6 1.1 3.6E-05 32.5 2.0 44 89-135 3-46 (97)
82 2elh_A CG11849-PA, LD40883P; s 73.4 3.1 0.00011 29.7 3.5 44 85-133 16-59 (87)
83 1jko_C HIN recombinase, DNA-in 73.2 1.1 3.9E-05 27.7 1.1 43 91-138 5-47 (52)
84 1hlv_A CENP-B, major centromer 72.1 3.1 0.00011 31.4 3.5 49 87-138 3-51 (131)
85 1tc3_C Protein (TC3 transposas 71.9 2.9 9.9E-05 25.2 2.7 42 90-136 4-45 (51)
86 3hug_A RNA polymerase sigma fa 67.6 3.6 0.00012 29.4 2.8 46 92-142 38-83 (92)
87 1hjb_A Ccaat/enhancer binding 67.2 15 0.0005 26.8 6.0 43 137-179 29-75 (87)
88 1je8_A Nitrate/nitrite respons 63.9 5.1 0.00018 28.1 3.0 51 89-145 19-69 (82)
89 1gu4_A CAAT/enhancer binding p 61.9 12 0.00042 26.7 4.7 40 136-178 28-67 (78)
90 1p4w_A RCSB; solution structur 60.9 7.1 0.00024 28.7 3.4 47 89-141 32-78 (99)
91 1t2k_D Cyclic-AMP-dependent tr 59.9 30 0.001 23.0 6.2 27 150-176 25-51 (61)
92 1ci6_A Transcription factor AT 58.8 36 0.0012 23.0 6.5 33 145-177 28-60 (63)
93 2wuj_A Septum site-determining 58.5 11 0.00039 25.0 3.8 44 133-176 13-56 (57)
94 2yy0_A C-MYC-binding protein; 57.4 20 0.00069 23.5 4.8 32 147-178 19-50 (53)
95 2wt7_A Proto-oncogene protein 57.3 39 0.0013 22.7 6.5 30 148-177 31-60 (63)
96 2o8x_A Probable RNA polymerase 55.9 4.6 0.00016 26.7 1.5 46 91-141 15-60 (70)
97 1fse_A GERE; helix-turn-helix 55.7 9.1 0.00031 25.4 3.0 48 89-142 9-56 (74)
98 1s7o_A Hypothetical UPF0122 pr 55.7 15 0.00052 27.5 4.6 47 91-142 22-68 (113)
99 1x3u_A Transcriptional regulat 54.1 6.3 0.00022 26.8 2.0 48 92-145 17-64 (79)
100 3c57_A Two component transcrip 51.8 6.1 0.00021 28.5 1.7 46 91-142 27-72 (95)
101 3m48_A General control protein 51.6 23 0.00079 21.1 3.8 26 154-179 7-32 (33)
102 2oxj_A Hybrid alpha/beta pepti 50.6 32 0.0011 20.6 4.3 26 153-178 7-32 (34)
103 1xsv_A Hypothetical UPF0122 pr 49.8 19 0.00065 26.9 4.3 47 91-142 25-71 (113)
104 1ku3_A Sigma factor SIGA; heli 46.3 9.2 0.00031 25.8 1.8 50 91-141 10-59 (73)
105 3mzy_A RNA polymerase sigma-H 46.1 12 0.00042 28.3 2.7 45 91-141 109-153 (164)
106 2p7v_B Sigma-70, RNA polymeras 45.9 7.4 0.00025 25.9 1.3 50 91-141 5-54 (68)
107 2rgt_A Fusion of LIM/homeobox 45.9 0.44 1.5E-05 38.5 -6.0 30 83-112 134-163 (169)
108 2rnj_A Response regulator prot 45.5 6.5 0.00022 27.9 0.9 48 90-143 28-75 (91)
109 3c3g_A Alpha/beta peptide with 44.7 44 0.0015 19.8 4.3 25 154-178 7-31 (33)
110 2dgc_A Protein (GCN4); basic d 44.7 48 0.0017 22.3 5.3 32 147-178 30-61 (63)
111 3gp4_A Transcriptional regulat 43.6 1E+02 0.0036 23.7 7.9 35 87-134 36-70 (142)
112 3i5g_B Myosin regulatory light 43.5 39 0.0013 25.9 5.4 41 87-127 5-50 (153)
113 3c3f_A Alpha/beta peptide with 42.6 50 0.0017 19.7 4.3 25 154-178 8-32 (34)
114 1iuf_A Centromere ABP1 protein 42.0 33 0.0011 26.5 4.7 51 86-136 6-60 (144)
115 2rn7_A IS629 ORFA; helix, all 41.4 22 0.00074 25.7 3.3 46 89-134 4-52 (108)
116 1tty_A Sigma-A, RNA polymerase 40.6 9.8 0.00033 26.8 1.2 50 92-142 19-68 (87)
117 1uo4_A General control protein 39.9 49 0.0017 19.8 4.0 26 154-179 8-33 (34)
118 1jnm_A Proto-oncogene C-JUN; B 39.4 36 0.0012 22.7 3.9 31 148-178 23-53 (62)
119 2lv7_A Calcium-binding protein 39.2 40 0.0014 24.2 4.5 47 87-133 25-78 (100)
120 3gpv_A Transcriptional regulat 38.3 69 0.0024 24.9 6.1 76 88-178 51-126 (148)
121 1dh3_A Transcription factor CR 38.1 56 0.0019 21.4 4.6 31 147-177 22-52 (55)
122 1gd2_E Transcription factor PA 37.7 75 0.0026 22.0 5.4 35 144-178 33-67 (70)
123 1hjb_A Ccaat/enhancer binding 37.1 1.1E+02 0.0037 22.1 6.4 37 143-179 32-68 (87)
124 1or7_A Sigma-24, RNA polymeras 36.0 16 0.00056 28.6 2.0 46 92-142 141-186 (194)
125 1r8e_A Multidrug-efflux transp 35.5 73 0.0025 26.7 6.3 35 89-136 42-76 (278)
126 1t2k_D Cyclic-AMP-dependent tr 35.4 95 0.0032 20.4 6.4 38 140-177 22-59 (61)
127 3ulq_B Transcriptional regulat 34.7 25 0.00084 25.1 2.6 47 87-139 25-71 (90)
128 2x7l_M HIV REV; nuclear export 34.7 17 0.00058 27.8 1.8 36 97-146 15-50 (115)
129 1rp3_A RNA polymerase sigma fa 34.4 18 0.0006 29.3 2.0 46 92-142 188-233 (239)
130 1u78_A TC3 transposase, transp 34.3 26 0.00089 26.0 2.9 42 89-135 4-45 (141)
131 1gu4_A CAAT/enhancer binding p 34.0 1.2E+02 0.0042 21.3 6.3 42 137-178 33-74 (78)
132 2bni_A General control protein 33.3 74 0.0025 19.0 4.0 25 154-178 8-32 (34)
133 3clo_A Transcriptional regulat 33.2 27 0.00093 29.4 3.1 51 90-146 196-246 (258)
134 2wt7_A Proto-oncogene protein 32.6 1.1E+02 0.0038 20.3 6.4 34 145-178 21-54 (63)
135 3aqt_A Bacterial regulatory pr 32.6 8 0.00027 31.8 -0.4 41 99-140 54-94 (245)
136 1q06_A Transcriptional regulat 32.4 1E+02 0.0035 23.5 6.1 76 88-178 35-110 (135)
137 2x48_A CAG38821; archeal virus 30.6 24 0.00081 22.1 1.8 39 91-134 13-53 (55)
138 1kd8_B GABH BLL, GCN4 acid bas 30.5 92 0.0031 18.8 4.8 28 152-179 6-33 (36)
139 3hh0_A Transcriptional regulat 29.8 1.5E+02 0.005 23.0 6.7 73 88-178 39-111 (146)
140 2q0o_A Probable transcriptiona 29.3 34 0.0012 28.3 3.0 48 89-142 173-220 (236)
141 1jnm_A Proto-oncogene C-JUN; B 28.9 1.3E+02 0.0043 19.9 6.3 35 143-177 25-59 (62)
142 2k27_A Paired box protein PAX- 28.6 57 0.002 25.0 4.1 41 90-135 24-64 (159)
143 3bni_A Putative TETR-family tr 27.9 12 0.00043 30.2 -0.0 40 99-139 51-90 (229)
144 2b5a_A C.BCLI; helix-turn-heli 27.8 29 0.00099 22.8 1.9 37 115-152 26-62 (77)
145 2kvr_A Ubiquitin carboxyl-term 27.7 28 0.00095 27.0 2.0 23 115-137 72-94 (130)
146 2a6c_A Helix-turn-helix motif; 27.5 28 0.00094 23.9 1.8 24 115-138 34-57 (83)
147 2jpc_A SSRB; DNA binding prote 27.4 12 0.00042 23.9 -0.1 42 96-143 3-44 (61)
148 3t72_q RNA polymerase sigma fa 27.3 67 0.0023 23.4 4.0 49 92-141 20-68 (99)
149 3lph_A Protein REV; helix-loop 27.2 62 0.0021 22.6 3.5 36 97-146 18-53 (72)
150 1fi6_A EH domain protein REPS1 27.1 32 0.0011 24.0 2.1 43 91-133 2-49 (92)
151 3fmy_A HTH-type transcriptiona 26.9 53 0.0018 21.9 3.2 42 90-138 9-50 (73)
152 2xi8_A Putative transcription 26.1 21 0.00072 22.6 0.9 24 115-138 17-40 (66)
153 3b7h_A Prophage LP1 protein 11 26.1 26 0.00088 23.2 1.4 36 115-150 23-58 (78)
154 2zhg_A Redox-sensitive transcr 24.9 1.6E+02 0.0054 23.0 6.1 75 89-177 46-120 (154)
155 1l3l_A Transcriptional activat 24.9 52 0.0018 27.1 3.4 47 89-141 171-217 (234)
156 3qq6_A HTH-type transcriptiona 24.6 30 0.001 23.5 1.5 37 116-152 27-63 (78)
157 1gd2_E Transcription factor PA 24.5 1.4E+02 0.0048 20.6 5.0 45 134-178 15-60 (70)
158 2hfr_A Fowlicidin-3, cathelici 24.2 24 0.00082 19.6 0.7 8 247-254 2-9 (27)
159 2pmy_A RAS and EF-hand domain- 23.9 24 0.00081 24.4 0.9 45 89-133 18-67 (91)
160 1kd8_A GABH AIV, GCN4 acid bas 23.9 1.3E+02 0.0043 18.2 4.8 26 154-179 8-33 (36)
161 1ci6_A Transcription factor AT 23.7 1.7E+02 0.0057 19.5 6.3 32 147-178 23-54 (63)
162 1u78_A TC3 transposase, transp 23.1 62 0.0021 23.8 3.2 45 90-138 59-105 (141)
163 3bs3_A Putative DNA-binding pr 23.0 20 0.0007 23.6 0.3 24 115-138 26-49 (76)
164 3iv1_A Tumor susceptibility ge 22.9 2.1E+02 0.007 20.3 6.1 39 136-174 14-52 (78)
165 2hy6_A General control protein 22.9 1.3E+02 0.0044 17.9 4.5 25 155-179 9-33 (34)
166 1go4_E MAD1 (mitotic arrest de 22.8 1.6E+02 0.0053 21.9 5.2 32 148-179 13-44 (100)
167 2vz4_A Tipal, HTH-type transcr 22.4 1.4E+02 0.0047 21.6 5.0 35 88-135 36-70 (108)
168 2r1j_L Repressor protein C2; p 22.3 22 0.00077 22.6 0.4 24 115-138 21-44 (68)
169 2q24_A Putative TETR family tr 22.1 33 0.0011 26.5 1.5 42 97-140 21-62 (194)
170 2hxo_A Putative TETR-family tr 22.1 69 0.0024 26.3 3.6 51 87-138 11-62 (237)
171 1l0o_C Sigma factor; bergerat 21.8 19 0.00066 29.1 0.0 43 92-139 199-241 (243)
172 1r8d_A Transcription activator 21.1 1.9E+02 0.0065 20.8 5.5 35 88-135 37-71 (109)
173 3o9x_A Uncharacterized HTH-typ 20.9 67 0.0023 23.9 3.0 41 92-139 71-111 (133)
174 2lhi_A Calmodulin, serine/thre 20.8 65 0.0022 25.1 3.0 39 89-127 2-45 (176)
175 1zug_A Phage 434 CRO protein; 20.8 25 0.00085 22.7 0.4 25 115-139 19-43 (71)
176 2q1z_A RPOE, ECF SIGE; ECF sig 20.6 11 0.00036 29.6 -1.8 25 117-141 156-180 (184)
177 1k78_A Paired box protein PAX5 20.3 56 0.0019 24.7 2.5 42 88-134 29-70 (149)
178 1c07_A Protein (epidermal grow 20.1 45 0.0015 23.3 1.7 43 91-133 3-50 (95)
No 1
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1e-20 Score=136.65 Aligned_cols=65 Identities=32% Similarity=0.559 Sum_probs=60.6
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 80 SSSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 80 ~~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+...+.+|+|++||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 2 SSGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CSSCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccC
Confidence 35566788899999999999999999999999999999999999999999999999999999854
No 2
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=2e-20 Score=138.48 Aligned_cols=66 Identities=33% Similarity=0.607 Sum_probs=61.1
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
.....+|+|++||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+....
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 445677889999999999999999999999999999999999999999999999999999986544
No 3
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=135.40 Aligned_cols=65 Identities=38% Similarity=0.674 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 80 SSSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 80 ~~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+.....+|+|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 2 s~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 2 SSGSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CSTTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 34556788899999999999999999999999999999999999999999999999999999854
No 4
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=137.08 Aligned_cols=64 Identities=28% Similarity=0.501 Sum_probs=60.0
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+.+|+|++||.+|+.+||.+|..++||+..++.+||.+|||++++|+|||||||+|+|++.
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHH
Confidence 4456788899999999999999999999999999999999999999999999999999999854
No 5
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=3.4e-20 Score=133.85 Aligned_cols=64 Identities=38% Similarity=0.693 Sum_probs=59.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+.+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 3 ~~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 4455677899999999999999999999999999999999999999999999999999999854
No 6
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=2.8e-20 Score=137.67 Aligned_cols=65 Identities=31% Similarity=0.485 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 80 SSSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 80 ~~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+...+.+|+|++||.+|+.+||..|..++||+..+|.+||.+|||++++|+|||||||+|+|+.+
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 2 SSGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 34566788899999999999999999999999999999999999999999999999999999854
No 7
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.80 E-value=1.4e-20 Score=132.78 Aligned_cols=61 Identities=30% Similarity=0.450 Sum_probs=53.5
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 84 SSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 84 ~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+.+|+|+.||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhcC
Confidence 4578899999999999999999999999999999999999999999999999999999853
No 8
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.80 E-value=4.5e-20 Score=135.66 Aligned_cols=67 Identities=31% Similarity=0.462 Sum_probs=61.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLEL 147 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~ 147 (257)
...+.+|+|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+.+.
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 3456677899999999999999999999999999999999999999999999999999999976553
No 9
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.80 E-value=2.2e-20 Score=132.16 Aligned_cols=61 Identities=36% Similarity=0.635 Sum_probs=56.1
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 84 SSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 84 ~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+.+|+|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678899999999999999999999999999999999999999999999999999999853
No 10
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-20 Score=134.54 Aligned_cols=65 Identities=32% Similarity=0.451 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 80 SSSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 80 ~~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+...+.+++|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcc
Confidence 35567788899999999999999999999999999999999999999999999999999999854
No 11
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.2e-20 Score=134.84 Aligned_cols=65 Identities=35% Similarity=0.552 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 80 SSSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 80 ~~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+...+.+|+|++||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 2 SSGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CSCCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 35566788899999999999999999999999999999999999999999999999999999853
No 12
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-20 Score=133.93 Aligned_cols=65 Identities=26% Similarity=0.412 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 80 SSSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 80 ~~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+...+.+|+|++||.+|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 2 SSGSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp CSSCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 34566788899999999999999999999999999999999999999999999999999999854
No 13
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=4.8e-20 Score=136.46 Aligned_cols=64 Identities=31% Similarity=0.602 Sum_probs=59.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+.+|+|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+..
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhccc
Confidence 4556778899999999999999999999999999999999999999999999999999999853
No 14
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.79 E-value=1e-19 Score=133.80 Aligned_cols=66 Identities=33% Similarity=0.546 Sum_probs=60.9
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
..+..+++|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+...+
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 345567889999999999999999999999999999999999999999999999999999997654
No 15
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.78 E-value=4.8e-20 Score=129.53 Aligned_cols=58 Identities=38% Similarity=0.689 Sum_probs=53.3
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 85 SQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
.+|.|+.||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999997
No 16
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=4e-20 Score=136.46 Aligned_cols=64 Identities=28% Similarity=0.447 Sum_probs=59.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+.+|+|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+.+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 3456778899999999999999999999999999999999999999999999999999999854
No 17
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=8.8e-20 Score=131.02 Aligned_cols=62 Identities=31% Similarity=0.507 Sum_probs=58.6
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 84 SSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 84 ~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
+++|+|++||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+...
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 35788999999999999999999999999999999999999999999999999999998654
No 18
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=8.3e-20 Score=126.89 Aligned_cols=57 Identities=33% Similarity=0.587 Sum_probs=55.3
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 86 QERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
+|+|++||..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 478999999999999999999999999999999999999999999999999999997
No 19
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-20 Score=137.23 Aligned_cols=64 Identities=30% Similarity=0.413 Sum_probs=59.9
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+.+|+|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4566778899999999999999999999999999999999999999999999999999999854
No 20
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.78 E-value=1.4e-19 Score=131.69 Aligned_cols=63 Identities=27% Similarity=0.492 Sum_probs=58.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
..+.+|+|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 345678899999999999999999999999999999999999999999999999999999853
No 21
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=7.5e-20 Score=139.34 Aligned_cols=66 Identities=29% Similarity=0.583 Sum_probs=60.7
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
...+.+|+|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 345567889999999999999999999999999999999999999999999999999999996644
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=6.7e-20 Score=135.62 Aligned_cols=64 Identities=16% Similarity=0.361 Sum_probs=59.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhc----CCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEE----IKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~----~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+.+|+|+.||.+|+.+||.+|..+ +||+..+|.+||.+|||+++||+|||||||+|+|+..
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 445677889999999999999999999 9999999999999999999999999999999999843
No 23
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=1.1e-19 Score=134.87 Aligned_cols=61 Identities=16% Similarity=0.306 Sum_probs=57.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhh----cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQE----EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~----~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
..+++|+|+.||.+|+.+||..|+. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3567788999999999999999999 999999999999999999999999999999999985
No 24
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-19 Score=132.35 Aligned_cols=60 Identities=25% Similarity=0.410 Sum_probs=56.3
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 85 SQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
..++|++||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|++.
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 346788899999999999999999999999999999999999999999999999999854
No 25
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.77 E-value=7.6e-20 Score=135.81 Aligned_cols=62 Identities=32% Similarity=0.526 Sum_probs=54.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 83 TSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+..+|+|++||..|+.+||..|..++||+..+|.+||.+|||++++|+|||||||+|+||..
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 45678899999999999999999999999999999999999999999999999999999864
No 26
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=2.5e-19 Score=132.85 Aligned_cols=64 Identities=31% Similarity=0.537 Sum_probs=58.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
..+.+|+|++||..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 4566788999999999999999999999999999999999999999999999999999998654
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=126.73 Aligned_cols=58 Identities=38% Similarity=0.584 Sum_probs=55.4
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 86 QERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
+|.|++||..|+.+||..|..++||+..++.+||.+|||++++|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999984
No 28
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=5.6e-20 Score=132.00 Aligned_cols=62 Identities=32% Similarity=0.595 Sum_probs=58.7
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 84 SSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 84 ~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
+++|+|++||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+...
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 56788999999999999999999999999999999999999999999999999999998653
No 29
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.77 E-value=1e-19 Score=130.68 Aligned_cols=60 Identities=35% Similarity=0.636 Sum_probs=57.2
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 85 SQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
++|+|++||..|+.+||..|..++||+..++.+||..|||+++||+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 467899999999999999999999999999999999999999999999999999999864
No 30
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=9.2e-20 Score=130.05 Aligned_cols=61 Identities=31% Similarity=0.511 Sum_probs=57.9
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 84 SSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 84 ~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+++|+|++||.+|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4578899999999999999999999999999999999999999999999999999999854
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.76 E-value=1.9e-19 Score=124.69 Aligned_cols=57 Identities=32% Similarity=0.518 Sum_probs=54.8
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 85 SQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
+++.|++|+..|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999986
No 32
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=1.7e-19 Score=133.82 Aligned_cols=61 Identities=21% Similarity=0.370 Sum_probs=56.9
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQE-----EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
...+++|+|+.||.+|+.+|| .|.. ++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 445677889999999999999 7999 999999999999999999999999999999999985
No 33
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=2.5e-19 Score=128.68 Aligned_cols=60 Identities=30% Similarity=0.552 Sum_probs=57.2
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 85 SQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.+|+|++||..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 467899999999999999999999999999999999999999999999999999999864
No 34
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.76 E-value=3.2e-19 Score=130.91 Aligned_cols=58 Identities=29% Similarity=0.331 Sum_probs=55.2
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 87 r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.+|++||.+|+.+||+.|..++||+..+|.+||..+||+++||+|||||||+|+|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999854
No 35
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.76 E-value=1.8e-19 Score=135.74 Aligned_cols=63 Identities=33% Similarity=0.623 Sum_probs=55.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.++.+|+|++||..|+.+||..|..++||+..+|.+||..|||++++|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 345678899999999999999999999999999999999999999999999999999999853
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=3.8e-19 Score=129.01 Aligned_cols=59 Identities=34% Similarity=0.582 Sum_probs=55.9
Q ss_pred CCCCCcCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 86 QERKKRLTSDQLESLERSFQE-EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.++|++||..|+.+||..|.. ++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467899999999999999996 99999999999999999999999999999999999854
No 37
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=4.6e-19 Score=129.13 Aligned_cols=64 Identities=34% Similarity=0.588 Sum_probs=59.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
..+++++.|++|+..|+.+||..|..++||+..++.+||..|||++++|+|||||||+|+|++.
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999854
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=4.8e-19 Score=128.84 Aligned_cols=59 Identities=32% Similarity=0.536 Sum_probs=56.0
Q ss_pred CCCCCcCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 86 QERKKRLTSDQLESLERSFQE-EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+++|++||..|+.+||..|.. ++||+..++.+||.+|||+++||+|||||||+|+|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 577999999999999999995 99999999999999999999999999999999999854
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.75 E-value=3.1e-19 Score=124.99 Aligned_cols=57 Identities=40% Similarity=0.662 Sum_probs=50.7
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 88 RKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.|++||.+|+.+||..|..++||+..++.+||.+|||+++||++||||||+|+|+.+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 478999999999999999999999999999999999999999999999999999864
No 40
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=6.6e-19 Score=134.45 Aligned_cols=66 Identities=23% Similarity=0.351 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------CCCcccccccccchhhhhHHH
Q 040769 80 SSSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELG---------------LQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 80 ~~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~Lg---------------L~~~qVkvWFQNRRak~Kr~~ 144 (257)
+...+.+|.|+.|+..|+.+||.+|+.++||+..+|.+||..|| |++.+|++||||||+|+|++.
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~ 81 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 81 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHh
Confidence 34566778899999999999999999999999999999999999 999999999999999999865
Q ss_pred H
Q 040769 145 L 145 (257)
Q Consensus 145 ~ 145 (257)
.
T Consensus 82 ~ 82 (95)
T 2cuf_A 82 N 82 (95)
T ss_dssp H
T ss_pred h
Confidence 3
No 41
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.75 E-value=3.2e-19 Score=125.12 Aligned_cols=59 Identities=31% Similarity=0.539 Sum_probs=48.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 83 TSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
.+.+++|++|+..|+.+||..|..++||+..++.+||..|||+++||++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 35667899999999999999999999999999999999999999999999999999986
No 42
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=3.3e-19 Score=136.61 Aligned_cols=63 Identities=32% Similarity=0.537 Sum_probs=56.2
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 83 TSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
+..+++|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+|+...
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 456788999999999999999999999999999999999999999999999999999998764
No 43
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.75 E-value=4.5e-19 Score=126.79 Aligned_cols=60 Identities=33% Similarity=0.511 Sum_probs=57.2
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 86 QERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
+|+|++||..|+.+||..|..++||+..++.+||.+|||++++|++||||||+|+|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 678999999999999999999999999999999999999999999999999999998653
No 44
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.75 E-value=8.8e-19 Score=127.31 Aligned_cols=64 Identities=20% Similarity=0.269 Sum_probs=59.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQE---EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+.+++|++|+..|+.+||.+|.. ++||+..++.+||.++||+++||++||||||+|+|+..
T Consensus 3 ~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 3 SGSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 45567788999999999999999987 99999999999999999999999999999999999864
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.75 E-value=5.1e-19 Score=122.34 Aligned_cols=54 Identities=31% Similarity=0.645 Sum_probs=51.0
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 90 KRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
+.||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999999999999999999999999999999999999985
No 46
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.7e-19 Score=129.86 Aligned_cols=62 Identities=23% Similarity=0.396 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 83 TSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
..+.+.|++||.+|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+..
T Consensus 6 ~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp SCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34556799999999999999999999999999999999999999999999999999999854
No 47
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.74 E-value=5.5e-19 Score=135.19 Aligned_cols=65 Identities=31% Similarity=0.502 Sum_probs=57.4
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
....+|+|++||..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+.+.+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34456789999999999999999999999999999999999999999999999999999996644
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=1e-18 Score=127.21 Aligned_cols=61 Identities=21% Similarity=0.343 Sum_probs=57.5
Q ss_pred CCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 84 SSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 84 ~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+.++.|++||.+|+.+||..|..++||+..++.+||.+|||+++||+|||||||+|+|+.+
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 3467799999999999999999999999999999999999999999999999999999854
No 49
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=128.72 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=58.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQE---EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
...+++++|++|+.+|+.+||.+|.. ++||+..+|.+||.++||+++||+|||||||+|+|+..
T Consensus 3 ~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 3 SGSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 44567788999999999999999987 69999999999999999999999999999999998743
No 50
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=1.2e-18 Score=123.32 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=55.7
Q ss_pred CCCCCCcCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 85 SQERKKRLTSDQLESLERSF---QEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
.+++|++|+..|+.+||.+| ..++||+..++.+||.+|||+++||++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 89999999999999999999999999999999999986
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.72 E-value=1e-18 Score=126.95 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=57.5
Q ss_pred CCCCCcCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 86 QERKKRLTSDQLESLERSF---QEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
+|+|++|+..|+.+||.+| ..++||+..++.+||..+||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 6789999999999999999 899999999999999999999999999999999999986543
No 52
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.3e-18 Score=131.48 Aligned_cols=56 Identities=27% Similarity=0.400 Sum_probs=52.9
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.++||.+|+.+||+.|..++||+..+|.+||..|||+++||+|||||||+|||++.
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999743
No 53
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.72 E-value=2.3e-18 Score=120.41 Aligned_cols=56 Identities=30% Similarity=0.416 Sum_probs=53.7
Q ss_pred CCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 88 RKKRLTSDQLESLERSFQE---EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
+|++|+.+|+.+||.+|.. ++||+..++.+||.++||+++||++||||||+|+|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 9999999999999999999999999999999999973
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.71 E-value=2.4e-18 Score=129.04 Aligned_cols=61 Identities=23% Similarity=0.443 Sum_probs=56.8
Q ss_pred CCCCCcCCHHHHHHHHHHh---hhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 86 QERKKRLTSDQLESLERSF---QEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F---~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
||+|++|+..|+.+||.+| ..++||+..+|.+||.+|||+++||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999986533
No 55
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-18 Score=126.94 Aligned_cols=59 Identities=24% Similarity=0.362 Sum_probs=55.2
Q ss_pred CCCCCCcCCHHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 85 SQERKKRLTSDQLESLERSF-QEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F-~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
..++|++++.+|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+.
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 34668889999999999999 999999999999999999999999999999999999974
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=129.15 Aligned_cols=65 Identities=18% Similarity=0.231 Sum_probs=59.8
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHh---------------------CCCCcccccccccchhhh
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLAREL---------------------GLQPRQIAVWFQNRRARW 140 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~L---------------------gL~~~qVkvWFQNRRak~ 140 (257)
..++||.|+.|+..|+.+||+.|..++||+..+|++||.+| +|++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45677889999999999999999999999999999999999 799999999999999999
Q ss_pred hHHHHH
Q 040769 141 KSKQLE 146 (257)
Q Consensus 141 Kr~~~~ 146 (257)
|+++..
T Consensus 83 kr~~~~ 88 (102)
T 2da6_A 83 AFRQKL 88 (102)
T ss_dssp HHHHHH
T ss_pred HHhhHh
Confidence 986543
No 57
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.70 E-value=6.4e-18 Score=120.51 Aligned_cols=60 Identities=22% Similarity=0.343 Sum_probs=55.8
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhh-cCCCCHHHHHHHHHHhCCCCcccccccccchhhh
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQE-EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARW 140 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~-~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~ 140 (257)
+...++|.||.|+.+|+.+|+..|+. +.||+.+.|..||.+|||++++|+|||||||--.
T Consensus 3 ~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 3 SGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 45567888999999999999999999 9999999999999999999999999999999644
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.69 E-value=8.3e-18 Score=126.27 Aligned_cols=60 Identities=28% Similarity=0.401 Sum_probs=56.3
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 83 TSSQERKKRLTSDQLESLERSFQE---EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
..++++|++|+.+|+.+||.+|.. ++||+..+|.+||.++||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 456677899999999999999999 999999999999999999999999999999999983
No 59
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.4e-18 Score=127.63 Aligned_cols=58 Identities=29% Similarity=0.353 Sum_probs=53.6
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 87 r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+++++||.+|+.+||..|..++||+..+|.+||.+|||++++|+|||||||+|+|++.
T Consensus 15 ~k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 15 QKFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp SCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 3455699999999999999999999999999999999999999999999999998743
No 60
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=8.1e-18 Score=125.37 Aligned_cols=59 Identities=29% Similarity=0.370 Sum_probs=54.7
Q ss_pred CCCCCcCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 86 QERKKRLTSDQLESLERSFQE---EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
+++|++|+..|+.+||.+|.. ++||+..++.+||..+||+++||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 456778999999999999999 99999999999999999999999999999999999854
No 61
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.69 E-value=5.8e-18 Score=138.93 Aligned_cols=62 Identities=32% Similarity=0.537 Sum_probs=55.5
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
..+++|+|++||..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 44567789999999999999999999999999999999999999999999999999999985
No 62
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=137.43 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=58.5
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
...++||+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 34567788999999999999999999999999999999999999999999999999999996
No 63
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=118.55 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
-|.+|+.+||..|..++||+..+|.+||..|||+++||++||||||+|+|+-+
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 47899999999999999999999999999999999999999999999999744
No 64
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=118.38 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=51.0
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
+..++.+|+.+||+.|..++||+..+|.+||.+|||++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 455679999999999999999999999999999999999999999999999886
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=7.4e-18 Score=121.61 Aligned_cols=54 Identities=37% Similarity=0.612 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.+|..|+.+||+.|..++||+..+|.+||.+|||+++||+|||||||+|+|+++
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 479999999999999999999999999999999999999999999999999865
No 66
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.67 E-value=1.4e-17 Score=138.52 Aligned_cols=61 Identities=26% Similarity=0.469 Sum_probs=54.7
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 83 TSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
.++||+|++||..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||+
T Consensus 99 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 99 SRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 4667889999999999999999999999999999999999999999999999999999984
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=7.7e-18 Score=119.65 Aligned_cols=49 Identities=29% Similarity=0.428 Sum_probs=46.4
Q ss_pred HHHHHHHHHHh-hhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 94 SDQLESLERSF-QEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 94 ~~Ql~~Le~~F-~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
..|+.+||+.| ..++||+..+|.+||.+|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45899999999 57999999999999999999999999999999999986
No 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.67 E-value=1.3e-17 Score=139.30 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=52.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
..++||+|++|+..|+.+||..|..++||+..+|.+||..|||+++||+|||||||+|+||...
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4566788999999999999999999999999999999999999999999999999999998653
No 69
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.66 E-value=1.5e-17 Score=128.14 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=54.3
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHH------------------hC---CCCcccccccccchhhh
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARE------------------LG---LQPRQIAVWFQNRRARW 140 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~------------------Lg---L~~~qVkvWFQNRRak~ 140 (257)
..+.+|.|+.|+..|+.+||..|..++||+..+|.+||.. || |++.+|+|||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3456778999999999999999999999999999999999 88 99999999999999999
Q ss_pred hHHHHH
Q 040769 141 KSKQLE 146 (257)
Q Consensus 141 Kr~~~~ 146 (257)
|+++..
T Consensus 86 k~k~~~ 91 (99)
T 1lfb_A 86 AFRHKL 91 (99)
T ss_dssp SCCC--
T ss_pred HHhchh
Confidence 987643
No 70
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.64 E-value=4.6e-17 Score=134.79 Aligned_cols=61 Identities=26% Similarity=0.430 Sum_probs=57.6
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 83 TSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
.+++|+|++|+..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4677889999999999999999999999999999999999999999999999999999973
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.62 E-value=1.1e-16 Score=133.35 Aligned_cols=64 Identities=22% Similarity=0.364 Sum_probs=54.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
..+.||+|++||..|+.+||..|..++||+..+|.+||.+|||+++||+|||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 4456788999999999999999999999999999999999999999999999999999998553
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.60 E-value=1.8e-16 Score=113.50 Aligned_cols=59 Identities=19% Similarity=0.225 Sum_probs=50.9
Q ss_pred CcCCHHHHHHHHHHhh---hcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHHHH
Q 040769 90 KRLTSDQLESLERSFQ---EEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELL 148 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~---~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~ 148 (257)
.+|+.+|+.+|+.+|. .++||+..+|.+||.++||+++||++||||||+|+|+...++.
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC----
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 3799999999999999 9999999999999999999999999999999999998766543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.46 E-value=6.6e-15 Score=126.03 Aligned_cols=61 Identities=13% Similarity=0.265 Sum_probs=53.7
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CCCcccccccccchhhh
Q 040769 82 STSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELG---------------------LQPRQIAVWFQNRRARW 140 (257)
Q Consensus 82 ~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~Lg---------------------L~~~qVkvWFQNRRak~ 140 (257)
..+.||.|+.|+..|+.+||+.|..++||+..+|.+||..|+ |++.+|++||||||+|+
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 355678889999999999999999999999999999999999 99999999999999998
Q ss_pred hH
Q 040769 141 KS 142 (257)
Q Consensus 141 Kr 142 (257)
|.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 75
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=3.7e-14 Score=101.62 Aligned_cols=46 Identities=20% Similarity=0.500 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhh
Q 040769 94 SDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRAR 139 (257)
Q Consensus 94 ~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak 139 (257)
.+|+.+||.+|..|++|+.+++..||..+||+.++|+|||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.42 E-value=7.5e-14 Score=105.09 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=50.9
Q ss_pred cCCHHHHHHHHHHhhh---cCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHH
Q 040769 91 RLTSDQLESLERSFQE---EIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQ 144 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~---~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~ 144 (257)
.|+.+++.+|+.+|.. ++||+..+|.+||.++||+++||++||||||.|+|+..
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 4899999999999987 99999999999999999999999999999999998754
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.35 E-value=2.7e-13 Score=117.64 Aligned_cols=61 Identities=13% Similarity=0.275 Sum_probs=53.4
Q ss_pred CCCCCCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC---------------------CCCcccccccccchhh
Q 040769 81 SSTSSQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELG---------------------LQPRQIAVWFQNRRAR 139 (257)
Q Consensus 81 ~~~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~Lg---------------------L~~~qVkvWFQNRRak 139 (257)
..++.||.|+.|++.|+.+||+.|..++||+..+|++||..|| |++.+|++||||||++
T Consensus 138 ~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ----CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred ccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 3455677788899999999999999999999999999999998 8999999999999997
Q ss_pred hh
Q 040769 140 WK 141 (257)
Q Consensus 140 ~K 141 (257)
..
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.31 E-value=2.3e-13 Score=125.98 Aligned_cols=56 Identities=29% Similarity=0.531 Sum_probs=52.8
Q ss_pred CCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 86 QERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
++.|+.++..|+..||+.|+.++||+..+|.+||.+|||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34567799999999999999999999999999999999999999999999999986
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.87 E-value=3e-10 Score=71.65 Aligned_cols=22 Identities=50% Similarity=1.054 Sum_probs=19.1
Q ss_pred cccccccccchhhhhHHHHHHH
Q 040769 127 RQIAVWFQNRRARWKSKQLELL 148 (257)
Q Consensus 127 ~qVkvWFQNRRak~Kr~~~~~~ 148 (257)
+||+|||||||+|||+++.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 6999999999999999876643
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.44 E-value=0.029 Score=39.78 Aligned_cols=39 Identities=23% Similarity=0.451 Sum_probs=36.7
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCCccccccccc
Q 040769 97 LESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQN 135 (257)
Q Consensus 97 l~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQN 135 (257)
.+.|+.+|...+.+.......|+.+..|+-.||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999953
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=78.13 E-value=0.93 Score=29.99 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=31.8
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccc
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQ 134 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQ 134 (257)
|++|+.++...+...+... ........++|.++|++..+|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 5679998877665544433 22122267899999999999999964
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=77.62 E-value=1.1 Score=32.54 Aligned_cols=44 Identities=11% Similarity=0.244 Sum_probs=30.5
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCccccccccc
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQN 135 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQN 135 (257)
|++||.++....-..+.... .....+||..+|++...|..|.+.
T Consensus 3 r~~ys~e~k~~~v~~~~~~~---g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSD---GASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGG---GSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC---CChHHHHHHHHCcCHHHHHHHHHH
Confidence 45788887765544443220 123678999999999999999754
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=73.37 E-value=3.1 Score=29.65 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=31.5
Q ss_pred CCCCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCccccccc
Q 040769 85 SQERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWF 133 (257)
Q Consensus 85 ~~r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWF 133 (257)
.++.+.+|+.++....-..+... . -..+||+++|++...|..|.
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~ 59 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWC 59 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHH
Confidence 34556789998865554555432 1 35688999999999999986
No 83
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=73.23 E-value=1.1 Score=27.66 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=29.9
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchh
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
.++.++...+...+... . ...+||..+|++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 46666666555555433 2 3568999999999999999975443
No 84
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=72.06 E-value=3.1 Score=31.39 Aligned_cols=49 Identities=22% Similarity=0.441 Sum_probs=36.9
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchh
Q 040769 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 87 r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
++|++||.++...+-..+..+.... ..+||+.+|++...|..|..+++.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhh
Confidence 3578899999877766665444433 336899999999999999877654
No 85
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=71.86 E-value=2.9 Score=25.22 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=29.7
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccc
Q 040769 90 KRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNR 136 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNR 136 (257)
..++.++...+...+... . ...+||+.||++...|..|...-
T Consensus 4 ~~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhhH
Confidence 357777775555555433 1 36689999999999999998543
No 86
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=67.61 E-value=3.6 Score=29.37 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
++..+..+|.-.|.... ...+||..||++...|+.+...-|.|.|+
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 77888888877654432 46789999999999999877654444443
No 87
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=67.18 E-value=15 Score=26.84 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=26.2
Q ss_pred hhhhhHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 137 RARWKSKQLE----LLYDSLKQEYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 137 Rak~Kr~~~~----~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
|.+.|++..+ .....|..++..|..+-+.|..|+..|+..+..
T Consensus 29 rSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 29 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554333 334566666777777777777777777766653
No 88
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=63.88 E-value=5.1 Score=28.09 Aligned_cols=51 Identities=20% Similarity=0.171 Sum_probs=37.7
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
-..++..+..+|.-.++. ....+||..||++...|+.+..+-+.|.+....
T Consensus 19 ~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred HccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 345899999999885422 246789999999999999888766666554433
No 89
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=61.88 E-value=12 Score=26.66 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=20.4
Q ss_pred chhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 136 RRARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 136 RRak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
+|.+.|++..+.. +......|..||..|+.++..|+..+.
T Consensus 28 krSR~krk~r~~e---~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 28 RKSRDKAKMRNLE---TQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555544433 233444555555666666555555544
No 90
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=60.95 E-value=7.1 Score=28.73 Aligned_cols=47 Identities=17% Similarity=0.128 Sum_probs=35.3
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
...+++.+..+|.-.++.- ...+||..||+++..|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4569999999998765322 3488999999999999988765444433
No 91
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.87 E-value=30 Score=22.98 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040769 150 DSLKQEYDAVSREKLKLQEEVMKLKRM 176 (257)
Q Consensus 150 ~~l~~~~~~~~~e~~~l~~e~~~~~~~ 176 (257)
+.|....+.+..++..|..++..|+..
T Consensus 25 ~~Le~~~~~L~~~n~~L~~~i~~L~~e 51 (61)
T 1t2k_D 25 QSLEKKAEDLSSLNGQLQSEVTLLRNE 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.85 E-value=36 Score=22.96 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040769 145 LELLYDSLKQEYDAVSREKLKLQEEVMKLKRML 177 (257)
Q Consensus 145 ~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l 177 (257)
.+...+.|..++..|..+-..|+.|+..|+..+
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555666666666666666666665554
No 93
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=58.51 E-value=11 Score=25.02 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=31.7
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040769 133 FQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRM 176 (257)
Q Consensus 133 FQNRRak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~ 176 (257)
|..+..-....+-..+.+.+...++.+..++..|+.++.++++.
T Consensus 13 F~~~~rGY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 13 FTKSFRGYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp CCEETTEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44333356667888888999999999999999999988877654
No 94
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=57.42 E-value=20 Score=23.54 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 147 LLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 147 ~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
..++.|+.++..++.+...|.+++.+++..+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888888888888877777664
No 95
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.31 E-value=39 Score=22.67 Aligned_cols=30 Identities=33% Similarity=0.321 Sum_probs=14.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040769 148 LYDSLKQEYDAVSREKLKLQEEVMKLKRML 177 (257)
Q Consensus 148 ~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l 177 (257)
..+.|..++..+..+-..|..++..|+..+
T Consensus 31 ~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 31 ETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555455555555554443
No 96
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=55.92 E-value=4.6 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.035 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
.+++.+..+|.-.|... ..-.+||..+|++...|+.+...-|.+-|
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~ 60 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALL 60 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 37888889888876443 23578999999999999987754444433
No 97
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=55.74 E-value=9.1 Score=25.44 Aligned_cols=48 Identities=23% Similarity=0.231 Sum_probs=35.0
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
-..+++.|..+|...+.. + ...+||..+|++...|+.+...-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~~g--~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQD--K----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTTT--C----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHcC--C----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 445899999999885322 2 45689999999999999877654544443
No 98
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.73 E-value=15 Score=27.53 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=36.7
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
.+++.|..+|.-.|.... ...+||..+|++...|+.|...-|.+.|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 478888888887765442 45789999999999999998776666655
No 99
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=54.14 E-value=6.3 Score=26.77 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHH
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQL 145 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~ 145 (257)
+++.+..+|.-.+..- ...+||..+|++...|+.+..+-+.|.+....
T Consensus 17 L~~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 17 LSERERQVLSAVVAGL------PNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HCHHHHHHHHHHTTTC------CHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred CCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 6788888887743221 34689999999999999888766666655433
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=51.82 E-value=6.1 Score=28.52 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
.++..+..+|.-.++.- ...+||..||++...|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 48999999998864332 34789999999999999877655544443
No 101
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=51.63 E-value=23 Score=21.09 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 154 QEYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 154 ~~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
..-+.+..+|..|+.|+.+|++.+..
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 44556777889999999999988753
No 102
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=50.62 E-value=32 Score=20.58 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 153 KQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 153 ~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
...-+.+..+|..|+.|+.+|++.+.
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 34455677889999999999998875
No 103
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=49.84 E-value=19 Score=26.87 Aligned_cols=47 Identities=15% Similarity=0.120 Sum_probs=35.3
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
.+++.+..+|.-.|...- .-.+||..+|++...|+.+...-|.+-|+
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888877654432 45789999999999999988766666554
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=46.27 E-value=9.2 Score=25.84 Aligned_cols=50 Identities=10% Similarity=0.007 Sum_probs=34.3
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
.+++.+..+|...|..... ....-.+||..+|++...|+.+...-+.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788999999988851100 0113468999999999999987755444444
No 105
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=46.07 E-value=12 Score=28.28 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=30.4
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
.+++.+..+|. .|-.. ..-.+||..||++...|+.+...-|.+.|
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 153 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 46677777777 33322 24678999999999999877654444433
No 106
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.95 E-value=7.4 Score=25.93 Aligned_cols=50 Identities=10% Similarity=0.148 Sum_probs=34.2
Q ss_pred cCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 91 RLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
.+++.+..+|.-.|..+.+ ....-.+||..+|++...|+.+...-+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4788899999888832111 0123578999999999999987655444444
No 107
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.94 E-value=0.44 Score=38.53 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=21.4
Q ss_pred CCCCCCCCcCCHHHHHHHHHHhhhcCCCCH
Q 040769 83 TSSQERKKRLTSDQLESLERSFQEEIKLDP 112 (257)
Q Consensus 83 ~~~~r~R~r~t~~Ql~~Le~~F~~~~~p~~ 112 (257)
.+.+|.|+.|+..|+++|+..|+.+++|..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788899999999999999999999864
No 108
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=45.53 E-value=6.5 Score=27.94 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=35.8
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 90 KRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
..+++.+..+|.-.+..- ...+||..||++...|+.+..+-|.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 348999999998754322 345799999999999998887666665543
No 109
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=44.69 E-value=44 Score=19.80 Aligned_cols=25 Identities=8% Similarity=0.329 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 154 QEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 154 ~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
..-+.+..+|..|+.|+.++++.+.
T Consensus 7 dKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 7 XKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3445667788999999999998875
No 110
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=44.66 E-value=48 Score=22.35 Aligned_cols=32 Identities=19% Similarity=0.384 Sum_probs=22.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 147 LLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 147 ~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
.....|...-..+..++..|..++..|+..+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456667777788888889888888877664
No 111
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.59 E-value=1e+02 Score=23.73 Aligned_cols=35 Identities=11% Similarity=0.245 Sum_probs=22.5
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccc
Q 040769 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQ 134 (257)
Q Consensus 87 r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQ 134 (257)
...+.|+.+++..|... ...+.+|++-..|+..+.
T Consensus 36 ~g~R~Y~~~dl~~l~~I-------------~~lr~~G~sL~eIk~~l~ 70 (142)
T 3gp4_A 36 SGVRKFGAEDLRWILFT-------------RQMRRAGLSIEALIDYLA 70 (142)
T ss_dssp TSCBCBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHH
T ss_pred CCCeeeCHHHHHHHHHH-------------HHHHHcCCCHHHHHHHHH
Confidence 34667999999999433 333566666666665554
No 112
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=43.51 E-value=39 Score=25.86 Aligned_cols=41 Identities=20% Similarity=0.337 Sum_probs=32.8
Q ss_pred CCCCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCCc
Q 040769 87 ERKKRLTSDQLESLERSFQE-----EIKLDPDRKMKLARELGLQPR 127 (257)
Q Consensus 87 r~R~r~t~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~~ 127 (257)
.+|..+|.+|+..|...|.. +-+.+..+...+.+.||+.+.
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 34677999999999999974 457899988888888987654
No 113
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.63 E-value=50 Score=19.71 Aligned_cols=25 Identities=8% Similarity=0.295 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 154 QEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 154 ~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
..-+.+..++..|+.|+.++++.+.
T Consensus 8 dKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 8 XKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4445677788999999999998875
No 114
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=42.00 E-value=33 Score=26.47 Aligned_cols=51 Identities=8% Similarity=0.238 Sum_probs=36.6
Q ss_pred CCCCCcCCHHHHHHHHHHh-hhcCCCCHHHHHHH-HHHh--CCCCcccccccccc
Q 040769 86 QERKKRLTSDQLESLERSF-QEEIKLDPDRKMKL-AREL--GLQPRQIAVWFQNR 136 (257)
Q Consensus 86 ~r~R~r~t~~Ql~~Le~~F-~~~~~p~~~~r~~L-A~~L--gL~~~qVkvWFQNR 136 (257)
+++|.++|.+|...|-..+ ..++..+..+...- ..++ +++...|.-|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5779999999999998888 66766655443332 2267 77888888887653
No 115
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=41.35 E-value=22 Score=25.74 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=31.0
Q ss_pred CCcCCHHHHHHHHHHh-hhc-CCCC-HHHHHHHHHHhCCCCcccccccc
Q 040769 89 KKRLTSDQLESLERSF-QEE-IKLD-PDRKMKLARELGLQPRQIAVWFQ 134 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F-~~~-~~p~-~~~r~~LA~~LgL~~~qVkvWFQ 134 (257)
+.+||.++....-..+ ... .+.+ .....+||.++|++..+|..|.+
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 5579998876444433 322 1222 24567899999999999999964
No 116
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=40.60 E-value=9.8 Score=26.80 Aligned_cols=50 Identities=8% Similarity=0.053 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
+++.+..+|...|..... ....-.+||..+|++...|+.+...-+.|-|.
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 788899999888751100 01235788999999999999887655555443
No 117
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=39.95 E-value=49 Score=19.78 Aligned_cols=26 Identities=15% Similarity=0.413 Sum_probs=20.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 154 QEYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 154 ~~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
..-+.+..++..|+.|+.++++.+..
T Consensus 8 dKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 8 DKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 34456677888999999999988753
No 118
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=39.42 E-value=36 Score=22.73 Aligned_cols=31 Identities=10% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 148 LYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 148 ~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
....|......+..++..|..++..|...+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777777777766654
No 119
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=39.23 E-value=40 Score=24.16 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCCCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCC--CCccccccc
Q 040769 87 ERKKRLTSDQLESLERSFQE-----EIKLDPDRKMKLARELGL--QPRQIAVWF 133 (257)
Q Consensus 87 r~R~r~t~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL--~~~qVkvWF 133 (257)
++...++.+|+..|...|.. +-+.+..+...+.+.+|+ +...|+.+|
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34556999999999999974 457999999988888885 445555444
No 120
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=38.31 E-value=69 Score=24.90 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=41.9
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040769 88 RKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQ 167 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~ 167 (257)
..+.|+.+++..|.. ....+.+|++-..|+..+...+.... ......+.+......+..+-..|+
T Consensus 51 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sL~eIk~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~ 115 (148)
T 3gpv_A 51 GDRIFNEEALKYLEM-------------ILCLKNTGMPIQKIKQFIDWSMEGDS--TILHRLKLMKQQEANVLQLIQDTE 115 (148)
T ss_dssp CCEEBCHHHHHHHHH-------------HHHHHTTTCCHHHHHHHHHHHHHCGG--GHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeecCHHHHHHHHH-------------HHHHHHcCCCHHHHHHHHHhhhcCCC--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999943 33346677777777766654322211 122223344444555555555555
Q ss_pred HHHHHHHHHHH
Q 040769 168 EEVMKLKRMLK 178 (257)
Q Consensus 168 ~e~~~~~~~l~ 178 (257)
.....++..+.
T Consensus 116 ~~~~~L~~~i~ 126 (148)
T 3gpv_A 116 KNLKKIQQKIA 126 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 121
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=38.09 E-value=56 Score=21.41 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=21.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040769 147 LLYDSLKQEYDAVSREKLKLQEEVMKLKRML 177 (257)
Q Consensus 147 ~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l 177 (257)
...+.|...-..|..++..|..++..+...+
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777888888888877766543
No 122
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=37.70 E-value=75 Score=22.00 Aligned_cols=35 Identities=26% Similarity=0.293 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 144 QLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
.++.....+......+..|+..|+.++..|...+.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666667777777777777766654
No 123
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=37.14 E-value=1.1e+02 Score=22.09 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 143 KQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
.....-...+......|..||..|+.++..|+..+..
T Consensus 32 ~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~ 68 (87)
T 1hjb_A 32 DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELST 68 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445666677788899999999999999888764
No 124
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=35.99 E-value=16 Score=28.63 Aligned_cols=46 Identities=9% Similarity=-0.027 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
+++.+..+|.-.|-.. ..-.+||..||++...|+.+...-|.+.|+
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 5666666666655333 235689999999999999877655544443
No 125
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=35.52 E-value=73 Score=26.73 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccc
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNR 136 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNR 136 (257)
.+.|+.+|+..| ......+.+|++-..|+..+.++
T Consensus 42 ~R~y~~~~~~~l-------------~~i~~l~~~g~~l~~i~~~~~~~ 76 (278)
T 1r8e_A 42 YRYYTDSQLIHL-------------DLIKSLKYIGTPLEEMKKAQDLE 76 (278)
T ss_dssp CEEEETGGGGHH-------------HHHHHHHHTTCCHHHHHHHTTSC
T ss_pred ccccCHHHHHHH-------------HHHHHHHHCCCCHHHHHHHHHhC
Confidence 456999998888 34444578888888888888765
No 126
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=35.40 E-value=95 Score=20.43 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040769 140 WKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRML 177 (257)
Q Consensus 140 ~Kr~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l 177 (257)
.+-...+...+.|..++..+..+-..|..|+..|+..+
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33355667788999999999999999999999988765
No 127
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.74 E-value=25 Score=25.11 Aligned_cols=47 Identities=17% Similarity=0.129 Sum_probs=33.1
Q ss_pred CCCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhh
Q 040769 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRAR 139 (257)
Q Consensus 87 r~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak 139 (257)
.....+|..++.+|.-.++-- ...+||..||++++.|+....+=+.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345569999999998876322 46789999999999998766544333
No 128
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=34.66 E-value=17 Score=27.77 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=23.0
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 97 LESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 97 l~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
+.+++-.|+.|+||...-- +|- =+|||.+||..+..
T Consensus 15 vRiIkiLyQSNPyP~peGT-----------Rqa---RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 15 VRLIKFLYQSNPPPNPEGT-----------RQA---RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHHSSCCCCCCCC-----------TTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCc-----------hhh---hHhHHHHHHHHHHH
Confidence 3455666888999876411 111 16899999886544
No 129
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=34.43 E-value=18 Score=29.32 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
+++.+..+|.-.|... ....+||..||++...|+.+...-|.+.|+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 6778888887776433 245689999999999998877655544443
No 130
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.27 E-value=26 Score=26.02 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=32.1
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCccccccccc
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQN 135 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQN 135 (257)
+..++.++...+...+.... ...+||+.||++...|..|++.
T Consensus 4 ~~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp SCCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHc
Confidence 35688888777766665432 3578899999999999999865
No 131
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=33.99 E-value=1.2e+02 Score=21.31 Aligned_cols=42 Identities=17% Similarity=0.290 Sum_probs=33.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 137 RARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 137 Rak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
..|.+-...+.....|..++..|..+-+.|..|+..|+..+.
T Consensus 33 krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 33 KAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555677778888999999999999999999988887664
No 132
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.34 E-value=74 Score=19.00 Aligned_cols=25 Identities=12% Similarity=0.368 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 154 QEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 154 ~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
..-+.+..++..|..|+.++++.+.
T Consensus 8 dKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 8 DKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3445567788999999999998875
No 133
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.19 E-value=27 Score=29.44 Aligned_cols=51 Identities=14% Similarity=0.006 Sum_probs=39.0
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 90 KRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
..+++.+..+|.-.++.- .-.+||..||+++..|++...+-|.|-|.....
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~ 246 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSVGNSI 246 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHH
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHH
Confidence 468999999988864322 467899999999999999887777776654433
No 134
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.59 E-value=1.1e+02 Score=20.34 Aligned_cols=34 Identities=32% Similarity=0.357 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 145 LELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 145 ~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
.......|....+.+..++..|..++..|...+.
T Consensus 21 Kk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~ 54 (63)
T 2wt7_A 21 RRELTDTLQAETDQLEDEKSALQTEIANLLKEKE 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677888888999999999999988877654
No 135
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=32.56 E-value=8 Score=31.79 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=29.7
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhh
Q 040769 99 SLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARW 140 (257)
Q Consensus 99 ~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~ 140 (257)
...+.|....|-. ....+||++.|++...|-..|.||-.-.
T Consensus 54 aA~~lf~~~G~~~-~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll 94 (245)
T 3aqt_A 54 SARTLMAERGVDN-VGIAEITEGANIGTGTFYNYFPDREQLL 94 (245)
T ss_dssp HHHHHHHHHCGGG-CCHHHHHHHTTSCGGGGGGTCSSHHHHH
T ss_pred HHHHHHHhcCccc-CcHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 4445566655433 3367899999999999999999975443
No 136
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=32.41 E-value=1e+02 Score=23.46 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=41.7
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040769 88 RKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQ 167 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~ 167 (257)
..+.|+.+++..|. .....+.+|++-..|+.++........ ......+.+......+..+-..|+
T Consensus 35 g~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~eI~~~l~~~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~ 99 (135)
T 1q06_A 35 GYRTYTQQHLNELT-------------LLRQARQVGFNLEESGELVNLFNDPQR--HSADVKRRTLEKVAEIERHIEELQ 99 (135)
T ss_dssp SCEECCHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHHHHHCTTC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeeCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhhhcCCc--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34569999999994 333346778877777777754332111 112223334444455555555555
Q ss_pred HHHHHHHHHHH
Q 040769 168 EEVMKLKRMLK 178 (257)
Q Consensus 168 ~e~~~~~~~l~ 178 (257)
.....++..+.
T Consensus 100 ~~~~~L~~~~~ 110 (135)
T 1q06_A 100 SMRDQLLALAN 110 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 137
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=30.56 E-value=24 Score=22.10 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=27.1
Q ss_pred cCC--HHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccc
Q 040769 91 RLT--SDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQ 134 (257)
Q Consensus 91 r~t--~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQ 134 (257)
.++ .++...+...+.... ...+||..||++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g~-----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMGY-----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTTC-----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 566665555554332 356899999999999998874
No 138
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.48 E-value=92 Score=18.79 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 152 LKQEYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 152 l~~~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
|...-+.+..++..|+.|+.+|++.+..
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 3344456677888999999999988764
No 139
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=29.82 E-value=1.5e+02 Score=22.95 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=41.5
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040769 88 RKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQ 167 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~ 167 (257)
.++.|+.+++..|. .....+.+|++-..|+..+...... .....+.|....+.+..+-..++
T Consensus 39 g~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~~I~~~l~~~~~~-----~~~~~~~L~~q~~~L~~~i~~l~ 100 (146)
T 3hh0_A 39 GHRLYTKDDLYVLQ-------------QIQSFKHLGFSLGEIQNIILQRDIE-----TEVFLRQMHFQREVLLAEQERIA 100 (146)
T ss_dssp SCEEBCHHHHHHHH-------------HHHHHHHTTCCHHHHHHHHTSSEEE-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEeeCHHHHHHHH-------------HHHHHHHcCCCHHHHHHHHHccCCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999983 3333456777777777776654321 11122234444455555555555
Q ss_pred HHHHHHHHHHH
Q 040769 168 EEVMKLKRMLK 178 (257)
Q Consensus 168 ~e~~~~~~~l~ 178 (257)
..+..++..+.
T Consensus 101 ~~l~~l~~~i~ 111 (146)
T 3hh0_A 101 KVLSHMDEMTK 111 (146)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 140
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=29.35 E-value=34 Score=28.32 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhH
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKS 142 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr 142 (257)
...+|+.++++|.-.++-. .-.+||..||++++.|+...++-+.|-.-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4569999999987654322 35789999999999999887765555443
No 141
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.85 E-value=1.3e+02 Score=19.88 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040769 143 KQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRML 177 (257)
Q Consensus 143 ~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l 177 (257)
...+...+.|..++..+..+-..|..++..|+..+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888999999899988888877655
No 142
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=28.64 E-value=57 Score=25.05 Aligned_cols=41 Identities=10% Similarity=0.107 Sum_probs=31.0
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCccccccccc
Q 040769 90 KRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQN 135 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQN 135 (257)
+.++.++...+-..+... ....+||+.||++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 468888777666666543 13567899999999999999875
No 143
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.86 E-value=12 Score=30.18 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=29.1
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhh
Q 040769 99 SLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRAR 139 (257)
Q Consensus 99 ~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak 139 (257)
.....|....|-.. ...+||++.|++...|-..|.+|-.-
T Consensus 51 aA~~l~~~~G~~~~-tv~~IA~~AGvs~~t~Y~~F~sKe~L 90 (229)
T 3bni_A 51 ACADLLDEVGYDAL-STRAVALRADVPIGSVYRFFGNKRQM 90 (229)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHhcChhhc-cHHHHHHHHCCCchhHHHHcCCHHHH
Confidence 34445666655433 36789999999999999999985443
No 144
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=27.82 E-value=29 Score=22.82 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCcccccccccchhhhhHHHHHHHHHHH
Q 040769 115 KMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSL 152 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~~~~l 152 (257)
..+||..+|++...|.-|...++. ..........+.+
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~~-~~~~~l~~la~~l 62 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDRN-ISLINIHKICAAL 62 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCSC-CBHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHCCCCC-CCHHHHHHHHHHh
Confidence 467999999999999999987763 3333444444433
No 145
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=27.73 E-value=28 Score=26.98 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=19.9
Q ss_pred HHHHHHHhCCCCcccccccccch
Q 040769 115 KMKLARELGLQPRQIAVWFQNRR 137 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRR 137 (257)
...+|..+|++..+++.|.-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 57789999999999999987555
No 146
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=27.52 E-value=28 Score=23.87 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCCcccccccccchh
Q 040769 115 KMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
..+||+.+|++...|.-|..+++.
T Consensus 34 q~elA~~~gis~~~is~~e~g~~~ 57 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKID 57 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCGG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999887763
No 147
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.43 E-value=12 Score=23.92 Aligned_cols=42 Identities=7% Similarity=0.046 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHH
Q 040769 96 QLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSK 143 (257)
Q Consensus 96 Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~ 143 (257)
|..+|.-.++.- ...+||..||+++..|+.+..+-+.|.+..
T Consensus 3 e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 3 ERQVLKLIDEGY------TNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHHHHTSC------CSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCC------CHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 455665533222 236899999999999998876655555443
No 148
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=27.34 E-value=67 Score=23.40 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
+++.|..++.-.|..+.. ....-.+||..+|++...|+..-..-+.+-|
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 677788888877753211 1124578999999999999876544444443
No 149
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=27.24 E-value=62 Score=22.62 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=22.9
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHH
Q 040769 97 LESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLE 146 (257)
Q Consensus 97 l~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~ 146 (257)
+.+++-.|+.|+||..+--.. | =.|||.+|+..+..
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 345666688999988542111 1 15899999876543
No 150
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=27.09 E-value=32 Score=24.01 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=31.3
Q ss_pred cCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCCccccccc
Q 040769 91 RLTSDQLESLERSFQE-----EIKLDPDRKMKLARELGLQPRQIAVWF 133 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~~qVkvWF 133 (257)
.++.+++..+++.|.. +-+.+..+...+...+|++...|+..|
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 49 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIW 49 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 4688999999999974 346777887777778887665544433
No 151
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.93 E-value=53 Score=21.88 Aligned_cols=42 Identities=2% Similarity=0.089 Sum_probs=33.5
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchh
Q 040769 90 KRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
..++.+.+..+.+..... ..+||..+|++...|.-|=++++.
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~~ 50 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNAX 50 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 358888888886655433 578999999999999999988764
No 152
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=26.14 E-value=21 Score=22.62 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCcccccccccchh
Q 040769 115 KMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
..+||..+|++...|.-|..+++.
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKYN 40 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467899999999999999887653
No 153
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=26.13 E-value=26 Score=23.16 Aligned_cols=36 Identities=17% Similarity=0.233 Sum_probs=24.5
Q ss_pred HHHHHHHhCCCCcccccccccchhhhhHHHHHHHHH
Q 040769 115 KMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYD 150 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~~~ 150 (257)
..+||..+|++...|..|..+++............+
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~~~~~~~~l~~ia~ 58 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCG 58 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 467899999999999999988762333333333333
No 154
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=24.93 E-value=1.6e+02 Score=23.01 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=38.4
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQE 168 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~~ 168 (257)
.+.|+.+++..|. .....+.+|++-..|+..+...+..... ........+......+..+-..|+.
T Consensus 46 ~R~Y~~~dl~~l~-------------~I~~lr~~G~sl~eI~~~l~~~~~~~~~-~~~~~~~ll~~~~~~l~~qi~~L~~ 111 (154)
T 2zhg_A 46 QRRYKRDVLRYVA-------------IIKIAQRIGIPLATIGEAFGVLPEGHTL-SAKEWKQLSSQWREELDRRIHTLVA 111 (154)
T ss_dssp CEEBCTTHHHHHH-------------HHHHHHHHTCCHHHHHHHHCC-----CC-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEeCHHHHHHHH-------------HHHHHHHCCCCHHHHHHHHHhccccCcc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999883 3444567788888887777643221100 0111222233333444444455555
Q ss_pred HHHHHHHHH
Q 040769 169 EVMKLKRML 177 (257)
Q Consensus 169 e~~~~~~~l 177 (257)
....++..+
T Consensus 112 ~~~~L~~~~ 120 (154)
T 2zhg_A 112 LRDELDGCI 120 (154)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444444
No 155
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=24.85 E-value=52 Score=27.09 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=34.6
Q ss_pred CCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhhh
Q 040769 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
...+|+.++++|.-..+ . ..-.+||..||++++.|+...++-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~-g-----~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV-G-----KTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-T-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 45699999998866432 2 24578999999999999987766555543
No 156
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=24.64 E-value=30 Score=23.45 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=21.9
Q ss_pred HHHHHHhCCCCcccccccccchhhhhHHHHHHHHHHH
Q 040769 116 MKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSL 152 (257)
Q Consensus 116 ~~LA~~LgL~~~qVkvWFQNRRak~Kr~~~~~~~~~l 152 (257)
.+||..+|++...|.-|-.+++..-......+..+.+
T Consensus 27 ~elA~~~gis~~~is~~E~G~~~~p~~~~l~~ia~~l 63 (78)
T 3qq6_A 27 SELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVL 63 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSCCCCBHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 4677778888777777777633333333444444433
No 157
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.52 E-value=1.4e+02 Score=20.59 Aligned_cols=45 Identities=20% Similarity=0.150 Sum_probs=27.1
Q ss_pred ccchhhh-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 134 QNRRARW-KSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 134 QNRRak~-Kr~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
|||-+.- -|..++.....|...-..+..++..+..++..|+..+.
T Consensus 15 qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~ 60 (70)
T 1gd2_E 15 QNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVR 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554322 23445555666666666677777777777777766554
No 158
>2hfr_A Fowlicidin-3, cathelicidin; alpha helix, antimicrobial protein; NMR {Synthetic}
Probab=24.22 E-value=24 Score=19.65 Aligned_cols=8 Identities=50% Similarity=1.335 Sum_probs=6.5
Q ss_pred CCCCCCCC
Q 040769 247 PFWGLLPT 254 (257)
Q Consensus 247 ~~~~~~~~ 254 (257)
-|||.||.
T Consensus 2 RF~P~vpv 9 (27)
T 2hfr_A 2 RFWPLVPV 9 (27)
T ss_dssp CSCSSSSS
T ss_pred CccccCcc
Confidence 38999985
No 159
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=23.95 E-value=24 Score=24.38 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCCccccccc
Q 040769 89 KKRLTSDQLESLERSFQE-----EIKLDPDRKMKLARELGLQPRQIAVWF 133 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~~qVkvWF 133 (257)
...++.+++..|...|.. +.+.+..+...+...+|++...|+.+|
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~ 67 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVF 67 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHH
Confidence 345888999999999874 446788888888888887665555544
No 160
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.87 E-value=1.3e+02 Score=18.17 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 154 QEYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 154 ~~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
..-..+..++..|..|+.+|++.+..
T Consensus 8 ~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 8 AEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 44455677888999999999988764
No 161
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.66 E-value=1.7e+02 Score=19.49 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040769 147 LLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 (257)
Q Consensus 147 ~~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~ 178 (257)
...+.+......+..++..|..++..|+..+.
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888899999999999988887765
No 162
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.11 E-value=62 Score=23.81 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=31.0
Q ss_pred CcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhC--CCCcccccccccchh
Q 040769 90 KRLTSDQLESLERSFQEEIKLDPDRKMKLARELG--LQPRQIAVWFQNRRA 138 (257)
Q Consensus 90 ~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~Lg--L~~~qVkvWFQNRRa 138 (257)
..++.++...+... ..++..+. .+|+..|| ++...|..|+.....
T Consensus 59 ~~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 59 KALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp CSSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred CcCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 35888888777766 45555554 46788888 678888888865443
No 163
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=22.98 E-value=20 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCCcccccccccchh
Q 040769 115 KMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
..+||..+|++...|..|..+++.
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~~ 49 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKSQ 49 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 467888888888888888877654
No 164
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=22.93 E-value=2.1e+02 Score=20.27 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=21.9
Q ss_pred chhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040769 136 RRARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLK 174 (257)
Q Consensus 136 RRak~Kr~~~~~~~~~l~~~~~~~~~e~~~l~~e~~~~~ 174 (257)
||.+++-.+.....++|++-.+.|...+.+|..=+.+++
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~ 52 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLD 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 555665555555566666666666555555554444443
No 165
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.91 E-value=1.3e+02 Score=17.91 Aligned_cols=25 Identities=16% Similarity=0.344 Sum_probs=19.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 155 EYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 155 ~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
.-+.+..+|..|..++.+|++.+..
T Consensus 9 kVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 9 AVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3455667888999999999988753
No 166
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.84 E-value=1.6e+02 Score=21.88 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Q 040769 148 LYDSLKQEYDAVSREKLKLQEEVMKLKRMLKE 179 (257)
Q Consensus 148 ~~~~l~~~~~~~~~e~~~l~~e~~~~~~~l~~ 179 (257)
.+..++.+.+.+..|+++|+++...|+..+..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888899999988888888865
No 167
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=22.42 E-value=1.4e+02 Score=21.64 Aligned_cols=35 Identities=23% Similarity=0.508 Sum_probs=23.7
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCccccccccc
Q 040769 88 RKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQN 135 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQN 135 (257)
..+.|+.+++..|.. ....+.+|++...|+.++..
T Consensus 36 g~R~Y~~~dl~~l~~-------------I~~lr~~G~sl~~I~~~l~~ 70 (108)
T 2vz4_A 36 GHRRYSDADLDRLQQ-------------ILFYRELGFPLDEVAALLDD 70 (108)
T ss_dssp CCEEBCHHHHHHHHH-------------HHHHHHTTCCHHHHHHHHTC
T ss_pred CCeecCHHHHHHHHH-------------HHHHHHCCCCHHHHHHHHhC
Confidence 355699999999843 22336677777777776654
No 168
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=22.28 E-value=22 Score=22.65 Aligned_cols=24 Identities=17% Similarity=0.410 Sum_probs=21.0
Q ss_pred HHHHHHHhCCCCcccccccccchh
Q 040769 115 KMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
..+||..+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSETE 44 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCC
Confidence 567999999999999999988654
No 169
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.07 E-value=33 Score=26.50 Aligned_cols=42 Identities=31% Similarity=0.335 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhhh
Q 040769 97 LESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARW 140 (257)
Q Consensus 97 l~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak~ 140 (257)
+..-...|...-| . ....+||++.|++...|-..|.||-.-.
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~ 62 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALI 62 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHH
Confidence 3455566888877 5 6788999999999999999999865433
No 170
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=22.05 E-value=69 Score=26.28 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCCCcCCHHHHH-HHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchh
Q 040769 87 ERKKRLTSDQLE-SLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRA 138 (257)
Q Consensus 87 r~R~r~t~~Ql~-~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRa 138 (257)
++|...+.+++. .-...|...-|-. .....||+++|++...|-..|.||-.
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHH
Confidence 334446665543 4555576665533 34678899999999999999998643
No 171
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=21.84 E-value=19 Score=29.05 Aligned_cols=43 Identities=12% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhh
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRAR 139 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak 139 (257)
+++.+..+|.-.|. ......+||..||++...|+.+...-|.+
T Consensus 199 L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 199 LDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp ------------------------------------------------
T ss_pred CCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 56666677765553 23456789999999999999888654444
No 172
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=21.05 E-value=1.9e+02 Score=20.81 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCccccccccc
Q 040769 88 RKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQN 135 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQN 135 (257)
..+.|+.+++..|... ...+.+|++-..|+..+..
T Consensus 37 g~R~Y~~~dl~~l~~I-------------~~l~~~G~~l~~I~~~l~~ 71 (109)
T 1r8d_A 37 GYRLYSDADLERLQQI-------------LFFKEIGFRLDEIKEMLDH 71 (109)
T ss_dssp CCEEBCHHHHHHHHHH-------------HHHHHTTCCHHHHHHHHHC
T ss_pred CCeeeCHHHHHHHHHH-------------HHHHHCCCCHHHHHHHHhC
Confidence 3456999999998543 2235556666666555543
No 173
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.90 E-value=67 Score=23.87 Aligned_cols=41 Identities=2% Similarity=0.079 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccccchhh
Q 040769 92 LTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRAR 139 (257)
Q Consensus 92 ~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQNRRak 139 (257)
++.+++..|.+..... ..+||..+|++...|..|-.+++..
T Consensus 71 ~~~~~l~~~R~~~gls-------q~~la~~~g~s~~~i~~~E~g~~~p 111 (133)
T 3o9x_A 71 VAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNAQP 111 (133)
T ss_dssp CCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHHTSSCC
T ss_pred CCHHHHHHHHHHcCCC-------HHHHHHHHCCCHHHHHHHHCCCCCC
Confidence 4555555554443322 3578999999999999999887654
No 174
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=20.81 E-value=65 Score=25.13 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=30.5
Q ss_pred CCcCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCCc
Q 040769 89 KKRLTSDQLESLERSFQE-----EIKLDPDRKMKLARELGLQPR 127 (257)
Q Consensus 89 R~r~t~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~~ 127 (257)
++.+|.+|+..|+..|.. +-+.+..+...+.+.+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 457899999999999874 447888888888888887554
No 175
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.76 E-value=25 Score=22.69 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCCcccccccccchhh
Q 040769 115 KMKLARELGLQPRQIAVWFQNRRAR 139 (257)
Q Consensus 115 r~~LA~~LgL~~~qVkvWFQNRRak 139 (257)
..+||..+|++...|..|..+++..
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~~ 43 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTKR 43 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCCC
Confidence 4679999999999999999987763
No 176
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=20.61 E-value=11 Score=29.59 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=16.7
Q ss_pred HHHHHhCCCCcccccccccchhhhh
Q 040769 117 KLARELGLQPRQIAVWFQNRRARWK 141 (257)
Q Consensus 117 ~LA~~LgL~~~qVkvWFQNRRak~K 141 (257)
+||..||+++..|+.+...-|.+.|
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr 180 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLR 180 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 5677778888888777655444443
No 177
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=20.28 E-value=56 Score=24.70 Aligned_cols=42 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCcCCHHHHHHHHHHhhhcCCCCHHHHHHHHHHhCCCCcccccccc
Q 040769 88 RKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQ 134 (257)
Q Consensus 88 ~R~r~t~~Ql~~Le~~F~~~~~p~~~~r~~LA~~LgL~~~qVkvWFQ 134 (257)
..+.++.++...+-..+.... ...+||+.||++...|..|++
T Consensus 29 ~~~~~s~e~r~~iv~~~~~G~-----s~~~iA~~lgis~~TV~rw~~ 70 (149)
T 1k78_A 29 NGRPLPDVVRQRIVELAHQGV-----RPCDISRQLRVSHGCVSKILG 70 (149)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHH
No 178
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.09 E-value=45 Score=23.35 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHhhh-----cCCCCHHHHHHHHHHhCCCCccccccc
Q 040769 91 RLTSDQLESLERSFQE-----EIKLDPDRKMKLARELGLQPRQIAVWF 133 (257)
Q Consensus 91 r~t~~Ql~~Le~~F~~-----~~~p~~~~r~~LA~~LgL~~~qVkvWF 133 (257)
.++.++...|++.|.. +-+.+..+...+...+|++...|+.+|
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~ 50 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIW 50 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHH
Confidence 3678889999999864 346777777777777777655544433
Done!