BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040771
(496 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 214/514 (41%), Positives = 309/514 (60%), Gaps = 52/514 (10%)
Query: 25 ESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHES 84
E+FL+C +H+ + +++TQ+ + S+LN+ I+N +F+ +TPKPL I+T + S
Sbjct: 5 ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 85 HVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQA 144
H+QAT++C+K+ GL++R RSGGHD +G+SYIS VPFV++D+ N+ SI ID+ ++TAWV+A
Sbjct: 65 HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 145 GATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVD 204
GATLGE+Y+ I ++ +FP G C ++ L+R YG++ DN+IDA LV+
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 205 VKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATD 263
V G++L+R+SMGEDLFWAIRGGGG +FG+I AWKIKLVAVP K T+F V K + G
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 264 VLYKWQYVAPKLPEELFIRVMILVPK---------------------------------- 289
+ KWQ +A K ++L + +
Sbjct: 245 LFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKS 304
Query: 290 -EEKTVSPNDCHEMSWGQSTVFFLDSSQNVTS---IDVLLQRPTEAKISFKAKSDYVKNV 345
E + DC E SW +T+F+ T+ ++LL R K +F K DYVK
Sbjct: 305 FPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKP 364
Query: 346 IPREGLEEIWKKMIDNE---NMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWP 402
IP + +I +K+ + + M++ + PYGG M EISES FPHRAG ++ + Y SW
Sbjct: 365 IPETAMVKILEKLYEEDVGAGMYVLY-PYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 403 EEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIG----ISSNNQTSLKDAEV 458
++ N + + N +R Y+ PYVS NPR YLNYRDLD+G S NN T A +
Sbjct: 424 KQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQ---ARI 478
Query: 459 YGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
+G KYF NF +LV+VKT+ DP+NFF+NEQSIPP
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
pdb|4DNS|B Chain B, Crystal Structure Of Bermuda Grass Isoallergen Bg60
Provides Insight Into The Various Cross-Allergenicity Of
The Pollen Group 4 Allergens
Length = 497
Score = 405 bits (1041), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/492 (42%), Positives = 296/492 (60%), Gaps = 35/492 (7%)
Query: 27 FLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHV 86
FL CL + + P ++ ++ + SV ++ ++N KFL T KPL I+T + SH+
Sbjct: 13 FLTCLTKDIPPRQ-----LYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASHI 67
Query: 87 QATVICAKQAGLELRIRSGGHDYDGLSYISTVP--FVILDMFNLRSIDIDIANETAWVQA 144
QA V+C ++ G+ +R+RSGGHDY+GLSY S P F ++DM +R++ ID TAWV +
Sbjct: 68 QAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVDS 127
Query: 145 GATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVD 204
GA LG+LY+ IA S FPAGVC ++ LLRKYG + DNVIDA++VD
Sbjct: 128 GAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVVD 187
Query: 205 VKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDV 264
+GR+L+R++MGED FWAIRGGGG SFG++ +W++KL+ VP KVT+F+V K + +GA D+
Sbjct: 188 AQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAIDL 247
Query: 265 LYKWQYVAPKLPEELFIRVMILVPKE----------------------EKTVSPNDCHEM 302
+ KWQ VAP LP++L IR+M + E ++ C EM
Sbjct: 248 VTKWQTVAPALPDDLMIRIMAMGQGAMFEALYLGTCKDLVLLMTARFPELGMNATHCKEM 307
Query: 303 SWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNE 362
+W +S + + ++ LL R + K K KSDYV IP+ E+I+ ++
Sbjct: 308 TWIESVPYIPMGPKG--TVRDLLNRTSNIKAFGKYKSDYVLEPIPKSDWEKIFTWLVKPG 365
Query: 363 NMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDS 422
M +PYGG ++ + ES T FP R+G LF IQY W EG A L T RD YD
Sbjct: 366 AGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEG--AAALPTQWTRDIYDF 423
Query: 423 MAPYVSSNPRNTYLNYRDLDIGISS--NNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDP 480
M PYVS NPR Y+NYRDLD+G++ N ++ +V+G KYF GNF++L K + DP
Sbjct: 424 MTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLARTKGKIDP 483
Query: 481 DNFFKNEQSIPP 492
+++F+NEQSIPP
Sbjct: 484 EDYFRNEQSIPP 495
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/495 (40%), Positives = 290/495 (58%), Gaps = 35/495 (7%)
Query: 25 ESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHES 84
E FL CL + + P +++ ++ + SVL I+N ++ KPL I+T S
Sbjct: 9 EDFLGCLVKEIPPR-----LLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVS 63
Query: 85 HVQATVICAKQAGLELRIRSGGHDYDGLSYISTVP--FVILDMFNLRSIDIDIANETAWV 142
H+Q+ V+C ++ + +R+RSGGHDY+GLSY S P F ++D+ +R++ +D TAWV
Sbjct: 64 HIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWV 123
Query: 143 QAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQL 202
+GA LGELY+ I S AFPAGVC ++ LLRKYGI+ +NVID +L
Sbjct: 124 DSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKL 183
Query: 203 VDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGAT 262
VD G++ +++SMG+D FWA+RGGGG SFG+++AW++KL+ VP VT+FK+ KT+++GA
Sbjct: 184 VDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAV 243
Query: 263 DVLYKWQYVAPKLPEELFIRVMILVPK----------------------EEKTVSPNDCH 300
D++ KWQ VAP+LP +L IR++ PK E ++P+ C+
Sbjct: 244 DIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCN 303
Query: 301 EMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKK-MI 359
EMSW QS F ++ D LL R K + KSDYV P+ E+I ++
Sbjct: 304 EMSWIQSIPFVHLGHRDALEDD-LLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLV 362
Query: 360 DNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDF 419
M ++PYG +S ES T FPHR G LF IQY W G A L +K D
Sbjct: 363 KPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSK--DI 420
Query: 420 YDSMAPYVSSNPRNTYLNYRDLDIGISS--NNQTSLKDAEVYGTKYFNGNFKKLVEVKTR 477
Y+ M PYVS NPR Y NYRD+D+G + N+ ++ +V+G KYF GNF++L K +
Sbjct: 421 YNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGK 480
Query: 478 FDPDNFFKNEQSIPP 492
DP ++F+NEQSIPP
Sbjct: 481 VDPTDYFRNEQSIPP 495
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Reticuline
pdb|3D2H|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Monoclinic Crystal Form
pdb|3D2J|A Chain A, Structure Of Berberine Bridge Enzyme From Eschscholzia
Californica, Tetragonal Crystal Form
Length = 538
Score = 311 bits (798), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 188/516 (36%), Positives = 290/516 (56%), Gaps = 46/516 (8%)
Query: 14 SIFLSV-----SGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLI 68
SIFLS+ +G++L L CL + ++ V + S+F L+ I+N F
Sbjct: 12 SIFLSLLNCAEAGNDL---LSCLTFNGVRNHT---VFSADSDSDFNRFLHLSIQNPLFQN 65
Query: 69 ASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNL 128
+ KP AI+ + + T+ C ++ +R+RSGGH Y+GLSY S PF+++D+ NL
Sbjct: 66 SLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNL 125
Query: 129 RSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLR 188
+ ID+ +ETAWV++G+TLGELY+ I +S F AG C ++ + R
Sbjct: 126 NRVSIDLESETAWVESGSTLGELYYAITESSSKLGFTAGWCPTVGTGGHISGGGFGMMSR 185
Query: 189 KYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKV 248
KYG++ DNV+DA L+D G IL+R++MGED+FWAIRGGGG +G I AWKIKL+ VPEKV
Sbjct: 186 KYGLAADNVVDAILIDANGAILDRQAMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKV 245
Query: 249 TLFKVDKTLA-QGATDVLYKWQYVAPKLPEELFIRVMILVPKEE------------KTVS 295
T+F+V K +A AT +L+KWQ+VA +L E+ + V+ +++ KTV+
Sbjct: 246 TVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVA 305
Query: 296 PN--------------DCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDY 341
+ D EMSWG+S +L + V+ ++ + E +FK K D
Sbjct: 306 KSTFDLLFPELGLVEEDYLEMSWGESFA-YLAGLETVSQLNNRFLKFDER--AFKTKVDL 362
Query: 342 VKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESW 401
K +P + + +++ N F+ N +GG+MS+IS T FPHR+G +++Y +W
Sbjct: 363 TKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAW 422
Query: 402 PEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDI-GISSNNQTSLKDA---- 456
+ + + L Y+ M P+VS NPR Y+N+ DLD+ GI N+T + +A
Sbjct: 423 NQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEIS 482
Query: 457 EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
+G YF N+++L+ KT DP+N F + QSIPP
Sbjct: 483 RSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIPP 518
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
(S)-Scoulerine
Length = 495
Score = 311 bits (797), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 273/481 (56%), Gaps = 35/481 (7%)
Query: 44 VIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIR 103
V + S+F L+ I+N F + KP AI+ + + T+ C ++ +R+R
Sbjct: 16 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 75
Query: 104 SGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHA 163
SGGH Y+GLSY S PF+++D+ NL + ID+ +ETAWV++G+TLGELY+ I +S
Sbjct: 76 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 135
Query: 164 FPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAI 223
F AG C ++ + RKYG++ DNV+DA L+D G IL+R++MGED+FWAI
Sbjct: 136 FTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 195
Query: 224 RGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATDVLYKWQYVAPKLPEELFIR 282
RGGGG +G I AWKIKL+ VPEKVT+F+V K +A AT +L+KWQ+VA +L E+ +
Sbjct: 196 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 283 VMILVPKEE------------KTVSPN--------------DCHEMSWGQSTVFFLDSSQ 316
V+ +++ KTV+ + D EMSWG+S +L +
Sbjct: 256 VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFA-YLAGLE 314
Query: 317 NVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMS 376
V+ ++ + E +FK K D K +P + + +++ N F+ N +GG+MS
Sbjct: 315 TVSQLNNRFLKFDER--AFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMS 372
Query: 377 EISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYL 436
+IS T FPHR+G +++Y +W + + + L Y+ M P+VS NPR Y+
Sbjct: 373 KISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYV 432
Query: 437 NYRDLDI-GISSNNQTSLKDA----EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIP 491
N+ DLD+ GI N+T + +A +G YF N+++L+ KT DP+N F + QSIP
Sbjct: 433 NHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
Query: 492 P 492
P
Sbjct: 493 P 493
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In
Complex With (S)-Reticuline
Length = 519
Score = 311 bits (796), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 273/481 (56%), Gaps = 35/481 (7%)
Query: 44 VIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIR 103
V + S+F L+ I+N F + KP AI+ + + T+ C ++ +R+R
Sbjct: 22 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 81
Query: 104 SGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHA 163
SGGH Y+GLSY S PF+++D+ NL + ID+ +ETAWV++G+TLGELY+ I +S
Sbjct: 82 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 141
Query: 164 FPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAI 223
F AG C ++ + RKYG++ DNV+DA L+D G IL+R++MGED+FWAI
Sbjct: 142 FTAGWCPTVGTGGAISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 201
Query: 224 RGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATDVLYKWQYVAPKLPEELFIR 282
RGGGG +G I AWKIKL+ VPEKVT+F+V K +A AT +L+KWQ+VA +L E+ +
Sbjct: 202 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 261
Query: 283 VMILVPKEE------------KTVSPN--------------DCHEMSWGQSTVFFLDSSQ 316
V+ +++ KTV+ + D EMSWG+S +L +
Sbjct: 262 VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFA-YLAGLE 320
Query: 317 NVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMS 376
V+ ++ + E +FK K D K +P + + +++ N F+ N +GG+MS
Sbjct: 321 TVSQLNNRFLKFDER--AFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMS 378
Query: 377 EISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYL 436
+IS T FPHR+G +++Y +W + + + L Y+ M P+VS NPR Y+
Sbjct: 379 KISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYV 438
Query: 437 NYRDLDI-GISSNNQTSLKDA----EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIP 491
N+ DLD+ GI N+T + +A +G YF N+++L+ KT DP+N F + QSIP
Sbjct: 439 NHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
Query: 492 P 492
P
Sbjct: 499 P 499
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With
Dehydroscoulerine
Length = 519
Score = 311 bits (796), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 178/481 (37%), Positives = 273/481 (56%), Gaps = 35/481 (7%)
Query: 44 VIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIR 103
V + S+F L+ I+N F + KP AI+ + + T+ C ++ +R+R
Sbjct: 22 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 81
Query: 104 SGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHA 163
SGGH Y+GLSY S PF+++D+ NL + ID+ +ETAWV++G+TLGELY+ I +S
Sbjct: 82 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 141
Query: 164 FPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAI 223
F AG C ++ + RKYG++ DNV+DA L+D G IL+R++MGED+FWAI
Sbjct: 142 FTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 201
Query: 224 RGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATDVLYKWQYVAPKLPEELFIR 282
RGGGG +G I AWKIKL+ VPEKVT+F+V K +A AT +L+KWQ+VA +L E+ +
Sbjct: 202 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 261
Query: 283 VMILVPKEE------------KTVSPN--------------DCHEMSWGQSTVFFLDSSQ 316
V+ +++ KTV+ + D EMSWG+S +L +
Sbjct: 262 VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFA-YLAGLE 320
Query: 317 NVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMS 376
V+ ++ + E +FK K D K +P + + +++ N F+ N +GG+MS
Sbjct: 321 TVSQLNNRFLKFDER--AFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMS 378
Query: 377 EISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYL 436
+IS T FPHR+G +++Y +W + + + L Y+ M P+VS NPR Y+
Sbjct: 379 KISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYV 438
Query: 437 NYRDLDI-GISSNNQTSLKDA----EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIP 491
N+ DLD+ GI N+T + +A +G YF N+++L+ KT DP+N F + QSIP
Sbjct: 439 NHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 498
Query: 492 P 492
P
Sbjct: 499 P 499
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant
Length = 498
Score = 307 bits (787), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 177/481 (36%), Positives = 272/481 (56%), Gaps = 35/481 (7%)
Query: 44 VIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIR 103
V + S+F L+ I+N F + KP AI+ + + T+ C ++ +R+R
Sbjct: 19 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 78
Query: 104 SGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHA 163
SGG Y+GLSY S PF+++D+ NL + ID+ +ETAWV++G+TLGELY+ I +S
Sbjct: 79 SGGASYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 138
Query: 164 FPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAI 223
F AG C ++ + RKYG++ DNV+DA L+D G IL+R++MGED+FWAI
Sbjct: 139 FTAGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 198
Query: 224 RGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATDVLYKWQYVAPKLPEELFIR 282
RGGGG +G I AWKIKL+ VPEKVT+F+V K +A AT +L+KWQ+VA +L E+ +
Sbjct: 199 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 258
Query: 283 VMILVPKEE------------KTVSPN--------------DCHEMSWGQSTVFFLDSSQ 316
V+ +++ KTV+ + D EMSWG+S +L +
Sbjct: 259 VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFA-YLAGLE 317
Query: 317 NVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMS 376
V+ ++ + E +FK K D K +P + + +++ N F+ N +GG+MS
Sbjct: 318 TVSQLNNRFLKFDER--AFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMS 375
Query: 377 EISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYL 436
+IS T FPHR+G +++Y +W + + + L Y+ M P+VS NPR Y+
Sbjct: 376 KISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYV 435
Query: 437 NYRDLDI-GISSNNQTSLKDA----EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIP 491
N+ DLD+ GI N+T + +A +G YF N+++L+ KT DP+N F + QSIP
Sbjct: 436 NHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 495
Query: 492 P 492
P
Sbjct: 496 P 496
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In
Complex With (S)-Reticuline
Length = 497
Score = 307 bits (786), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 177/481 (36%), Positives = 272/481 (56%), Gaps = 35/481 (7%)
Query: 44 VIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIR 103
V + S+F L+ I+N F + KP AI+ + + T+ C ++ +R+R
Sbjct: 16 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 75
Query: 104 SGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHA 163
SGGH Y+GLSY S PF+++D+ NL + ID+ +ETAWV++G+TLGELY+ I +S
Sbjct: 76 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 135
Query: 164 FPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAI 223
F AG ++ + RKYG++ DNV+DA L+D G IL+R++MGED+FWAI
Sbjct: 136 FTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 195
Query: 224 RGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATDVLYKWQYVAPKLPEELFIR 282
RGGGG +G I AWKIKL+ VPEKVT+F+V K +A AT +L+KWQ+VA +L E+ +
Sbjct: 196 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 283 VMILVPKEE------------KTVSPN--------------DCHEMSWGQSTVFFLDSSQ 316
V+ +++ KTV+ + D EMSWG+S +L +
Sbjct: 256 VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFA-YLAGLE 314
Query: 317 NVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMS 376
V+ ++ + E +FK K D K +P + + +++ N F+ N +GG+MS
Sbjct: 315 TVSQLNNRFLKFDER--AFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMS 372
Query: 377 EISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYL 436
+IS T FPHR+G +++Y +W + + + L Y+ M P+VS NPR Y+
Sbjct: 373 KISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYV 432
Query: 437 NYRDLDI-GISSNNQTSLKDA----EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIP 491
N+ DLD+ GI N+T + +A +G YF N+++L+ KT DP+N F + QSIP
Sbjct: 433 NHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
Query: 492 P 492
P
Sbjct: 493 P 493
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant
Length = 495
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 177/481 (36%), Positives = 272/481 (56%), Gaps = 35/481 (7%)
Query: 44 VIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIR 103
V + S+F L+ I+N F + KP AI+ + + T+ C ++ +R+R
Sbjct: 16 VFSADSDSDFNRFLHLSIQNPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLR 75
Query: 104 SGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHA 163
SGGH Y+GLSY S PF+++D+ NL + ID+ +ETAWV++G+TLGELY+ I +S
Sbjct: 76 SGGHSYEGLSYTSDTPFILIDLMNLNRVSIDLESETAWVESGSTLGELYYAITESSSKLG 135
Query: 164 FPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAI 223
F AG ++ + RKYG++ DNV+DA L+D G IL+R++MGED+FWAI
Sbjct: 136 FTAGWAPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDRQAMGEDVFWAI 195
Query: 224 RGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATDVLYKWQYVAPKLPEELFIR 282
RGGGG +G I AWKIKL+ VPEKVT+F+V K +A AT +L+KWQ+VA +L E+ +
Sbjct: 196 RGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAEELEEDFTLS 255
Query: 283 VMILVPKEE------------KTVSPN--------------DCHEMSWGQSTVFFLDSSQ 316
V+ +++ KTV+ + D EMSWG+S +L +
Sbjct: 256 VLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGESFA-YLAGLE 314
Query: 317 NVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMS 376
V+ ++ + E +FK K D K +P + + +++ N F+ N +GG+MS
Sbjct: 315 TVSQLNNRFLKFDER--AFKTKVDLTKEPLPSKAFYGLLERLSKEPNGFIALNGFGGQMS 372
Query: 377 EISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYL 436
+IS T FPHR+G +++Y +W + + + L Y+ M P+VS NPR Y+
Sbjct: 373 KISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMKPFVSKNPRLGYV 432
Query: 437 NYRDLDI-GISSNNQTSLKDA----EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIP 491
N+ DLD+ GI N+T + +A +G YF N+++L+ KT DP+N F + QSIP
Sbjct: 433 NHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLIDPNNVFNHPQSIP 492
Query: 492 P 492
P
Sbjct: 493 P 493
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale
pdb|3RJA|A Chain A, Crystal Structure Of Carbohydrate Oxidase From
Microdochium Nivale In Complex With Substrate Analogue
Length = 473
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 117/466 (25%), Positives = 204/466 (43%), Gaps = 78/466 (16%)
Query: 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDI 133
P AI + +H+Q+ V CAK+ L++ +SGGH Y + +++ + R ID+
Sbjct: 37 PTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQL--DRMIDV 94
Query: 134 DIANET---AWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKY 190
N+ A V+ GA LG L + N A G C + +
Sbjct: 95 ISYNDKTGIAHVEPGARLGHL-ATVLNDKYGRAISHGTCPGVGISGHFAHGGFGFSSHMH 153
Query: 191 GISVDNVIDAQLVDVKGRILNRESM-GEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVT 249
G++VD+V+ +V GRI+ + DLFW I+G G ++FG++ WK+ P+ +T
Sbjct: 154 GLAVDSVVGVTVVLADGRIVEASATENADLFWGIKGAG-SNFGIVAVWKLATFPAPKVLT 212
Query: 250 LFKV-----DKTLAQGATDVLYKW-QYVAPK----------------------LPEELFI 281
F V +KT A + + + ++VAP+ PE+
Sbjct: 213 RFGVTLNWKNKTSALKGIEAVEDYARWVAPREVNFRIGDYGAGNPGIEGLYYGTPEQWRA 272
Query: 282 RVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTE----AKISFKA 337
L+ N ++W +S + S N +D + +P E ++ K+
Sbjct: 273 AFQPLLDTLPAGYVVNPTTSLNWIESVL----SYSNFDHVDFITPQPVENFYAKSLTLKS 328
Query: 338 -KSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISE---SETAFPHRAGNLF 393
K D VKN + + ++ K+ D F Q + +GG+ S++++ +ETA+PHR L+
Sbjct: 329 IKGDAVKNFV--DYYFDVSNKVKD-RFWFYQLDVHGGKNSQVTKVTNAETAYPHR-DKLW 384
Query: 394 LIQYY------ESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISS 447
LIQ+Y +++PE D + N S+ + + Y+NY D +
Sbjct: 385 LIQFYDRYDNNQTYPETSFKFLDGWVN-------SVTKALPKSDWGMYINYADPRMD--- 434
Query: 448 NNQTSLKDAEVYGTK-YFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
+D Y TK Y+ N +L ++K +FDP + F Q++ P
Sbjct: 435 ------RD---YATKVYYGENLARLQKLKAKFDPTDRFYYPQAVRP 471
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum
Glucooligosaccharide Oxidase Reveals A Novel
Flavinylation
pdb|2AXR|A Chain A, Crystal Structure Of Glucooligosaccharide Oxidase From
Acremonium Strictum: A Novel Flavinylation Of
6-S-Cysteinyl, 8alpha-N1-Histidyl Fad
Length = 503
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 109/471 (23%), Positives = 190/471 (40%), Gaps = 87/471 (18%)
Query: 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDI 133
P AI + + A V C AG+++ + GGH Y + ++L++ + + +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 134 DIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGIS 193
D N A +Q GA LG ++ + A G C ++ +G++
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGN-RALSHGTCPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 194 VDNVIDAQLVDVKGRILN-RESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFK 252
+D +I A +V I++ E+ DLFWA+RGGGG F ++ ++ PE +T ++
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 253 VDKTLAQ----GATDVLYKWQYVAPKLPEELFIRVMI----------------------- 285
V T + L W +P EL +R+ I
Sbjct: 220 VTTTWNRKQHVAGLKALQDW--AQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQ 277
Query: 286 -LVPKEEKTVSPNDCHEMSW-GQSTVFFLDSSQNVT-SIDVL-------LQRPTEAKISF 335
++ K + + E W GQ + + N+T + DV L P + +
Sbjct: 278 PIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAI 337
Query: 336 KAKSDY-VKNVIPREGLEEIWKKMIDNENMFMQWNPYGGR---MSEISESETAFPHRAGN 391
+A DY N R G ++QW+ +GG+ ++ +S ETA+ HR
Sbjct: 338 QAFVDYKFDNSSVRPG-----------RGWWIQWDFHGGKNSALAAVSNDETAYAHR-DQ 385
Query: 392 LFLIQYYES----------WPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDL 441
L+L Q+Y+S +PE G ++ F ++ + + + Y NY D
Sbjct: 386 LWLWQFYDSIYDYENNTSPYPESGFEF-------MQGFVATIEDTLPEDRKGKYFNYAD- 437
Query: 442 DIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
T+L E Y+ GN +KL +K ++DP++ F N S+ P
Sbjct: 438 ---------TTLTKEEAQ-KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEP 478
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl
Fad In Glucooligosaccharide Oxidase From Acremonium
Strictum
Length = 503
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 108/471 (22%), Positives = 189/471 (40%), Gaps = 87/471 (18%)
Query: 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDI 133
P AI + + A V C AG+++ + GGH Y + ++L++ + + +
Sbjct: 43 PAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGGEDGHLMLELDRMYRVSV 102
Query: 134 DIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGIS 193
D N A +Q GA LG ++ + A G ++ +G++
Sbjct: 103 D-DNNVATIQGGARLGYTALELLDQGN-RALSHGTAPAVGVGGHVLGGGYGFATHTHGLT 160
Query: 194 VDNVIDAQLVDVKGRILN-RESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFK 252
+D +I A +V I++ E+ DLFWA+RGGGG F ++ ++ PE +T ++
Sbjct: 161 LDWLIGATVVLADASIVHVSETENADLFWALRGGGGG-FAIVSEFEFNTFEAPEIITTYQ 219
Query: 253 VDKTLAQ----GATDVLYKWQYVAPKLPEELFIRVMI----------------------- 285
V T + L W +P EL +R+ I
Sbjct: 220 VTTTWNRKQHVAGLKALQDW--AQNTMPRELSMRLEINANALNWEGNFFGNAKDLKKILQ 277
Query: 286 -LVPKEEKTVSPNDCHEMSW-GQSTVFFLDSSQNVT-SIDVL-------LQRPTEAKISF 335
++ K + + E W GQ + + N+T + DV L P + +
Sbjct: 278 PIMKKAGGKSTISKLVETDWYGQINTYLYGADLNITYNYDVHEYFYANSLTAPRLSDEAI 337
Query: 336 KAKSDY-VKNVIPREGLEEIWKKMIDNENMFMQWNPYGGR---MSEISESETAFPHRAGN 391
+A DY N R G ++QW+ +GG+ ++ +S ETA+ HR
Sbjct: 338 QAFVDYKFDNSSVRPG-----------RGWWIQWDFHGGKNSALAAVSNDETAYAHR-DQ 385
Query: 392 LFLIQYYES----------WPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDL 441
L+L Q+Y+S +PE G ++ F ++ + + + Y NY D
Sbjct: 386 LWLWQFYDSIYDYENNTSPYPESGFEF-------MQGFVATIEDTLPEDRKGKYFNYAD- 437
Query: 442 DIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
T+L E Y+ GN +KL +K ++DP++ F N S+ P
Sbjct: 438 ---------TTLTKEEAQ-KLYWRGNLEKLQAIKAKYDPEDVFGNVVSVEP 478
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|B Chain B, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|C Chain C, Crystal Structure Of Aclacinomycin Oxidoreductase
pdb|2IPI|D Chain D, Crystal Structure Of Aclacinomycin Oxidoreductase
Length = 521
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 108/484 (22%), Positives = 191/484 (39%), Gaps = 80/484 (16%)
Query: 73 KPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSID 132
+P + V V A AG + +RSGGH ++G V VI DM +R +
Sbjct: 55 RPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVI-DMSQMRQVF 113
Query: 133 IDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGI 192
D V+ GATLGE Y + V PAGVC + L R+ G+
Sbjct: 114 YDSGKRAFAVEPGATLGETYRALYLDWGV-TIPAGVCPQVGVGGHVLGGGYGPLSRRDGV 172
Query: 193 SVDNV--IDAQLVDVKGRILN------RESMGEDLFWAIRGGGGASFGVILAWKIKLVAV 244
D++ ++ +VD GR + +L+WA GGGG +FG++ + +
Sbjct: 173 VADHLYAVEVVVVDASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRT--- 229
Query: 245 PEKVTLFKVDKTLAQGATDVLYK---WQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHE 301
T + L + T L W + A L EE F R++ ++ S
Sbjct: 230 -PGATGTDPSQLLPKAPTSTLRHIVTWDWSA--LTEEAFTRIIDNHGAWHQSNSAAGTPY 286
Query: 302 MSWGQSTVFFLDSS-----------------------------QNVTSIDVLLQRPTEAK 332
S +VF+L+S T ++ +QR TE
Sbjct: 287 AS--MHSVFYLNSRAAGQILLDIQIDGGLDGAEALLNDFVAAVNEGTGVEPAVQRSTEPW 344
Query: 333 ISF--------------KAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWN--PYGGRMS 376
+ K+K Y++ +++ + + ++ + + YGG+++
Sbjct: 345 LRATLANKFDTGGFDRTKSKGAYLRKPWTAAQAATLYRHLSADSQVWGEVSLYSYGGKVN 404
Query: 377 EISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSM------APYVSSN 430
+ E+ TA R ++ + +W + + +L +R+ Y + P
Sbjct: 405 SVPETATATAQR-DSIIKVWMSATWMDPAHDDANL--AWIREIYREIFATTGGVPVPDDR 461
Query: 431 PRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSI 490
T++NY D+D+ N + + + T Y+ GN+ +L +VK R+DP + F++ S+
Sbjct: 462 TEGTFINYPDVDLVDERWNTSGVP----WYTLYYKGNYPRLQKVKARWDPRDVFRHALSV 517
Query: 491 -PPG 493
PPG
Sbjct: 518 RPPG 521
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVF|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 3 (P1)
pdb|2BVG|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVG|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 1 (P21)
pdb|2BVH|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|B Chain B, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|C Chain C, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
pdb|2BVH|D Chain D, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From
Arthrobacter Nicotinovorans. Crystal Form 2 (P21)
Length = 459
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 86/182 (47%), Gaps = 16/182 (8%)
Query: 73 KPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSID 132
+P I V +V A GLE+ +RSGGH+ +G Y + ++LD+ + SI
Sbjct: 38 RPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNG--YATNDGGIVLDLRLMNSIH 95
Query: 133 IDIANETAWVQAGATLGELY-----FKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLL 187
ID A A + G G+L F +A + +H G C L
Sbjct: 96 IDTAGSRARIGGGVISGDLVKEAAKFGLAAVTGMHP-KVGFC------GLALNGGVGFLT 148
Query: 188 RKYGISVDNVIDAQLVDVKGRIL-NRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPE 246
KYG++ DN++ A LV G ++ + +LFWA+R G G +FGV+ +++L +P
Sbjct: 149 PKYGLASDNILGATLVTATGDVIYCSDDERPELFWAVR-GAGPNFGVVTEVEVQLYELPR 207
Query: 247 KV 248
K+
Sbjct: 208 KM 209
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDW|B Chain B, The Native Crystal Structure Of The Primary Hexose Oxidase
( Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|A Chain A, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|B Chain B, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|C Chain C, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
pdb|2WDX|D Chain D, The Complexed Crystal Structure Of The Primary Hexose
Oxidase (Dbv29) In Antibiotic A40926 Biosynthesis
Length = 523
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 111/461 (24%), Positives = 183/461 (39%), Gaps = 79/461 (17%)
Query: 95 QAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFK 154
+ G + +RSGGH ++ V VI+DM L I D + ++ G TL E+Y K
Sbjct: 79 RTGKRVAVRSGGHCFEDFVDNPDV-KVIIDMSLLTEIAYDPSMNAFLIEPGNTLSEVYEK 137
Query: 155 IANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVDV----KGRIL 210
+ V P GVC + L R++G VD + ++V V K R++
Sbjct: 138 LYLGWNV-TIPGGVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVI 196
Query: 211 ----NRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVT------LFKVDKTLAQG 260
R+ DL+WA GGGG +FGV+ + ++ VPE V L K TL
Sbjct: 197 VATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMR---VPEDVGRNPERLLPKPPATLL-- 251
Query: 261 ATDVLYKWQYVAPKLPEELFIRVMILVPK-EEKTVSPNDCHEMSWGQ----STVFFLDSS 315
+ V + W + E F R++ + E+ P+ + W Q + V + S
Sbjct: 252 TSTVTFDWA----GMTEAAFSRLLRNHGEWYERNSGPDSPYTGLWSQLMIGNEVPGMGES 307
Query: 316 QNVTSIDVLLQRPTEAKI-------------------------------------SFKAK 338
+ I V RP ++ + K K
Sbjct: 308 GFMMPIQVDATRPDARRLLDAHIEAVIDGVPPAEVPEPIEQRWLASTPGRGGRGPASKTK 367
Query: 339 SDYVKNVIPREGLEEIWKKM--IDNENMFMQW-NPYGGRMSEISESETAFPHRAGNLFLI 395
+ Y++ + ++ +++ M +D + W YGG+++ + + TA P R + +
Sbjct: 368 AGYLRKRLTDRQIQAVYENMTHMDGIDYGAVWLIGYGGKVNTVDPAATALPQRDA-ILKV 426
Query: 396 QYYESWPEEGINATDL-YTNKL-RDFYDSMA--PYVSSNPRNTYLNYRDLDIGISSNNQT 451
Y W G A L + KL D Y P + Y+NY D D+ N +
Sbjct: 427 NYITGWANPGNEAKHLTWVRKLYADVYAETGGVPVPNDVSDGAYINYPDSDLADPGLNTS 486
Query: 452 SLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
+ ++ Y+ GN +L +VK +DP N F + SI P
Sbjct: 487 GVPWHDL----YYKGNHPRLRKVKAAYDPRNHFHHALSIRP 523
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|B Chain B, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|C Chain C, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3POP|D Chain D, The Crystal Structure Of Gilr, An Oxidoreductase That
Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis
pdb|3PQB|A Chain A, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|B Chain B, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|C Chain C, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
pdb|3PQB|D Chain D, The Crystal Structure Of Pregilvocarcin In Complex With
Gilr, An Oxidoreductase That Catalyzes The Terminal Step
Of Gilvocarcin Biosynthesis
Length = 501
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 111/518 (21%), Positives = 199/518 (38%), Gaps = 102/518 (19%)
Query: 46 FTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSG 105
FT + + + ++ N +F++ +P V A++ A G + RSG
Sbjct: 11 FTVGREDPRYIELSHSDNHRFVV----EPEEFFLPATPDDVVASLQKAVTEGRGVACRSG 66
Query: 106 GHDYDGLSYISTVPF-VILDMFNLRSIDIDIANETAWVQAGATLGEL---YFKIANTSKV 161
GH G ++ T ++LD+ NL +I V +GAT+ ++ F+ N
Sbjct: 67 GHC--GQDFVGTPRRDLVLDLHNLHAIGPAADGAGVRVGSGATVDQVQKALFRRWNA--- 121
Query: 162 HAFPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNV--IDAQLVD-------VKGRILNR 212
A P G C ++ L R+ G+ VD++ ++ +VD V R +
Sbjct: 122 -ALPLGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVAVVDESRTVRLVTARADDT 180
Query: 213 ESMGEDLFWAIRGGGGASFGVILAWKIKL--------VAVPEKVTLFKVDKTLAQGA--- 261
+GE LFWA GGGG +FGV+ A++ + V +P V K + A
Sbjct: 181 GDLGE-LFWAHTGGGGGNFGVVTAYEFRSPEHLATEPVGLPRAAGRLHVQKVVFPWAMID 239
Query: 262 -------TDVLYKW--QYVAPKLPEE-----LFIR-----VMILVPKEEKTVSPND---- 298
++W ++ P PE F+ V+ L+ +++ V P
Sbjct: 240 ETSFVTVMRRFFEWHERHSEPGSPESSLFATFFVNHVSSGVLQLMVQQDADVDPEGEILA 299
Query: 299 -----------------CHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDY 341
MSW T + DV+ R +KS Y
Sbjct: 300 RFVASLTEGTGVVGIPRGGVMSWLTGTRYM----SQADCGDVMGARSA-------SKSAY 348
Query: 342 VKNVIPREGLEEIWKKMIDN---ENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYY 398
+ E L + + + + + ++ +N YGG ++ S+ A P R ++ ++
Sbjct: 349 HRAAPTDEQLSVLHRHLHADHPGQASYVMFNSYGGEINRRGPSDAAVPQR-DSVVKSSWF 407
Query: 399 ESWPEEGINATDLYTNKLRDFYDSM------APYVSSNPRNTYLNYRDLDIGISSNNQTS 452
+W + ++ +L+ LR Y+ P Y+NY D D+ + N++
Sbjct: 408 SAWQDAELD--ELHLGWLRGLYEEFFAGTGGVPVTGGRTDGCYINYPDADLLDPARNRS- 464
Query: 453 LKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSI 490
E + Y+ N+ +L K +DP N F + SI
Sbjct: 465 ---GEPWHHLYYKDNYARLRSAKRAWDPLNTFHHSMSI 499
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y08|B Chain B, Structure Of The Substrate-Free Fad-Dependent Tirandamycin
Oxidase Taml
pdb|2Y3R|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|C Chain C, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3R|D Chain D, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P21 Space Group
pdb|2Y3S|A Chain A, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y3S|B Chain B, Structure Of The Tirandamycine-Bound Fad-Dependent
Tirandamycin Oxidase Taml In C2 Space Group
pdb|2Y4G|A Chain A, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
pdb|2Y4G|B Chain B, Structure Of The Tirandamycin-Bound Fad-Dependent
Tirandamycin Oxidase Taml In P212121 Space Group
Length = 530
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDI 133
P I + ++ + A ++G + +RSGGH Y+ S V V++DM L ++
Sbjct: 59 PEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDV-RVVMDMSRLSAVGF 117
Query: 134 DIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGIS 193
D V+AGATLG +Y + V P G C + L R +G
Sbjct: 118 DEERGAFAVEAGATLGAVYKTLFRVWGV-TLPGGACPDVGAGGHILGGGYGPLSRMHGSI 176
Query: 194 VD--NVIDAQLVDVKGR----ILNRESM--GEDLFWAI 223
VD + ++ +VD G I RE DL+WA
Sbjct: 177 VDYLHAVEVVVVDASGDARTVIATREPSDPNHDLWWAH 214
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 59/128 (46%), Gaps = 11/128 (8%)
Query: 371 YGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDL-YTNKL-RDFYDSMA--PY 426
YGG+++ + TA R ++ I Y +W + + + + +L RD Y P
Sbjct: 407 YGGKVNAVPADRTAVAQR-DSILKIVYVTTWEDPAQDPVHVRWIRELYRDVYADTGGVPV 465
Query: 427 VSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKN 486
Y+NY D+D+ N + + +E+Y + + +L VK R+DP N F++
Sbjct: 466 PGGAADGAYVNYPDVDLADEEWNTSGVPWSELY----YKDAYPRLQAVKARWDPRNVFRH 521
Query: 487 EQS--IPP 492
S +PP
Sbjct: 522 ALSVRVPP 529
>pdb|3PM9|A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|B Chain B, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|C Chain C, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|D Chain D, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|E Chain E, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
pdb|3PM9|F Chain F, Crystal Structure Of A Putative Dehydrogenase (Rpa1076)
From Rhodopseudomonas Palustris Cga009 At 2.57 A
Resolution
Length = 476
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 7/123 (5%)
Query: 132 DIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYG 191
+ID ++ T V+AGA L + K A ++ G S YG
Sbjct: 110 EIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYG 169
Query: 192 ISVDNVIDAQLVDVKGRILN------RESMGEDLFWAIRGGGGASFGVILAWKIKLVAVP 245
++ D + ++V GR+ N +++ G DL G G + G+I A +KL P
Sbjct: 170 LARDXALGVEVVLADGRVXNLLSKLKKDNTGYDLRDLFIGAEG-TLGIITAATLKLFPKP 228
Query: 246 EKV 248
V
Sbjct: 229 RAV 231
>pdb|3NEH|A Chain A, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
pdb|3NEH|B Chain B, Crystal Structure Of The Protein Lmo2462 From Listeria
Monocytogenes Complexed With Zn And Phosphonate Mimic Of
Dipeptide L-Leu-D-Ala
Length = 318
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 316 QNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQ 367
Q+ +DV +R EAK+ + + ++ IP +E WKK ++ N+F Q
Sbjct: 26 QDAEELDVNFERLIEAKMLLQGFAIFLDEDIP---VEHKWKKAVEQVNIFKQ 74
>pdb|3LU2|A Chain A, Structure Of Lmo2462, A Listeria Monocytogenes
Amidohydrolase Family Putative Dipeptidase
pdb|3LU2|B Chain B, Structure Of Lmo2462, A Listeria Monocytogenes
Amidohydrolase Family Putative Dipeptidase
Length = 311
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 316 QNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQ 367
Q+ +DV +R EAK + + ++ IP +E WKK ++ N+F Q
Sbjct: 27 QDAEELDVNFERLIEAKXLLQGFAIFLDEDIP---VEHKWKKAVEQVNIFKQ 75
>pdb|2J1N|A Chain A, Osmoporin Ompc
pdb|2J1N|B Chain B, Osmoporin Ompc
pdb|2J1N|C Chain C, Osmoporin Ompc
pdb|2J4U|P Chain P, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|Q Chain Q, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|R Chain R, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|U Chain U, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|V Chain V, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2J4U|W Chain W, E.Coli Ompc - Camel Lactoferrin Complex
pdb|2ZLE|D Chain D, Cryo-Em Structure Of Degp12OMP
pdb|3NB3|D Chain D, The Host Outer Membrane Proteins Ompa And Ompc Are Packed
At Specific Sites In The Shigella Phage Sf6 Virion As
Structural Components
pdb|4A8D|M Chain M, Degp Dodecamer With Bound Omp
Length = 346
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 384 AFPHRAGNLFLI-QYYESWPEEGINATDL----YTNKLRDFYDSMAPY---VSSNPRNTY 435
+ A N++L QY +++ NAT + + NK ++F +++A Y P Y
Sbjct: 224 GLKYDANNIYLAAQYTQTY-----NATRVGSLGWANKAQNF-EAVAQYQFDFGLRPSLAY 277
Query: 436 LNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPPGNL 495
L + ++G +++ LK +V T YFN N V+ K DN F + I N+
Sbjct: 278 LQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTYVDYKINLLDDNQFTRDAGINTDNI 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,555,843
Number of Sequences: 62578
Number of extensions: 605437
Number of successful extensions: 1422
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1336
Number of HSP's gapped (non-prelim): 45
length of query: 496
length of database: 14,973,337
effective HSP length: 103
effective length of query: 393
effective length of database: 8,527,803
effective search space: 3351426579
effective search space used: 3351426579
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)