Query 040771
Match_columns 496
No_of_seqs 324 out of 2222
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 11:38:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02441 cytokinin dehydrogena 100.0 2.2E-37 4.9E-42 325.9 41.3 216 42-269 40-266 (525)
2 TIGR01678 FAD_lactone_ox sugar 100.0 2.8E-33 6.2E-38 292.6 33.5 195 65-271 6-203 (438)
3 PLN02805 D-lactate dehydrogena 100.0 8.9E-33 1.9E-37 295.2 22.9 194 72-269 132-332 (555)
4 TIGR01676 GLDHase galactonolac 100.0 2.3E-32 5E-37 287.6 22.1 177 65-248 53-232 (541)
5 PRK11230 glycolate oxidase sub 100.0 1.3E-31 2.8E-36 284.7 23.4 198 70-269 52-255 (499)
6 TIGR01677 pln_FAD_oxido plant- 100.0 1.5E-31 3.4E-36 285.1 23.7 180 65-247 23-214 (557)
7 TIGR01679 bact_FAD_ox FAD-link 100.0 4E-31 8.7E-36 276.0 20.3 175 65-248 3-179 (419)
8 TIGR00387 glcD glycolate oxida 100.0 3E-30 6.5E-35 269.7 19.5 192 77-270 1-199 (413)
9 PRK11282 glcE glycolate oxidas 100.0 9.7E-30 2.1E-34 257.3 19.0 182 82-269 3-193 (352)
10 KOG1231 Proteins containing th 100.0 3.8E-29 8.3E-34 248.9 22.4 226 5-246 5-240 (505)
11 COG0277 GlcD FAD/FMN-containin 100.0 2.4E-29 5.3E-34 267.0 19.7 184 70-256 28-218 (459)
12 PLN02465 L-galactono-1,4-lacto 100.0 1.3E-28 2.7E-33 261.4 23.3 177 65-248 88-267 (573)
13 PF01565 FAD_binding_4: FAD bi 99.9 4.6E-27 9.9E-32 209.1 13.0 136 74-211 1-137 (139)
14 PRK13905 murB UDP-N-acetylenol 99.9 5.3E-25 1.1E-29 220.0 14.0 162 72-245 29-193 (298)
15 PRK11183 D-lactate dehydrogena 99.9 2.9E-23 6.2E-28 215.7 19.2 202 71-276 36-297 (564)
16 KOG4730 D-arabinono-1, 4-lacto 99.9 8E-22 1.7E-26 196.9 15.9 180 66-251 42-224 (518)
17 PRK14652 UDP-N-acetylenolpyruv 99.9 5.2E-22 1.1E-26 197.8 14.4 162 71-245 33-196 (302)
18 PRK12436 UDP-N-acetylenolpyruv 99.9 7.2E-22 1.6E-26 197.3 14.0 162 71-244 34-197 (305)
19 TIGR00179 murB UDP-N-acetyleno 99.9 1.1E-21 2.5E-26 194.2 14.3 162 71-243 10-174 (284)
20 PRK13906 murB UDP-N-acetylenol 99.9 1.6E-21 3.5E-26 194.8 14.1 160 72-243 35-196 (307)
21 PRK13903 murB UDP-N-acetylenol 99.9 5.2E-21 1.1E-25 193.9 15.9 164 71-245 30-197 (363)
22 KOG1232 Proteins containing th 99.9 2.2E-21 4.8E-26 189.2 11.9 187 62-250 78-271 (511)
23 KOG1233 Alkyl-dihydroxyacetone 99.8 9.4E-20 2E-24 178.1 15.8 201 66-267 153-362 (613)
24 PRK14649 UDP-N-acetylenolpyruv 99.8 1.7E-19 3.7E-24 179.4 14.0 163 72-244 19-192 (295)
25 PRK14653 UDP-N-acetylenolpyruv 99.7 1.1E-17 2.4E-22 165.9 14.1 160 72-245 32-194 (297)
26 COG0812 MurB UDP-N-acetylmuram 99.7 1.2E-16 2.6E-21 155.5 14.8 164 71-244 18-183 (291)
27 PRK14650 UDP-N-acetylenolpyruv 99.7 1.3E-16 2.8E-21 157.8 13.5 162 72-245 31-195 (302)
28 PRK00046 murB UDP-N-acetylenol 99.7 1.6E-16 3.4E-21 159.5 12.6 161 72-244 19-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.7 1E-15 2.2E-20 153.4 13.9 164 72-245 28-237 (354)
30 PF08031 BBE: Berberine and be 99.6 5.7E-16 1.2E-20 110.4 1.9 47 434-491 1-47 (47)
31 PRK14651 UDP-N-acetylenolpyruv 99.5 8.9E-14 1.9E-18 135.8 12.5 148 74-244 21-170 (273)
32 KOG1262 FAD-binding protein DI 99.5 3.9E-14 8.5E-19 139.3 8.4 126 122-249 105-233 (543)
33 PRK13904 murB UDP-N-acetylenol 99.2 3.4E-11 7.3E-16 116.6 10.6 143 72-245 17-160 (257)
34 PF00941 FAD_binding_5: FAD bi 95.6 0.018 3.9E-07 52.9 4.8 104 74-182 2-116 (171)
35 PRK09799 putative oxidoreducta 94.9 0.088 1.9E-06 51.7 7.6 140 76-240 4-155 (258)
36 TIGR02963 xanthine_xdhA xanthi 94.3 0.087 1.9E-06 56.3 6.5 151 74-240 192-357 (467)
37 TIGR03312 Se_sel_red_FAD proba 93.9 0.2 4.4E-06 49.1 7.6 142 77-240 4-154 (257)
38 PRK09971 xanthine dehydrogenas 93.8 0.08 1.7E-06 53.0 4.9 102 76-181 6-118 (291)
39 TIGR03195 4hydrxCoA_B 4-hydrox 91.4 0.39 8.4E-06 48.7 6.0 75 75-153 5-81 (321)
40 PF09265 Cytokin-bind: Cytokin 91.2 0.061 1.3E-06 53.1 0.0 33 457-490 248-280 (281)
41 TIGR03199 pucC xanthine dehydr 89.3 0.46 1E-05 46.8 4.4 97 80-181 1-109 (264)
42 COG0277 GlcD FAD/FMN-containin 88.2 0.27 5.9E-06 52.1 2.1 36 457-492 423-458 (459)
43 PLN02906 xanthine dehydrogenas 84.4 1.4 3E-05 53.2 5.5 79 75-157 229-309 (1319)
44 PLN00192 aldehyde oxidase 83.3 2.7 5.8E-05 50.9 7.2 84 74-158 233-317 (1344)
45 COG4630 XdhA Xanthine dehydrog 82.4 2.9 6.2E-05 42.6 5.9 141 73-224 202-352 (493)
46 TIGR02969 mam_aldehyde_ox alde 81.9 3.2 6.9E-05 50.2 7.2 78 75-156 237-316 (1330)
47 PLN00107 FAD-dependent oxidore 81.4 5.8 0.00012 38.6 7.4 22 466-487 176-197 (257)
48 PF04030 ALO: D-arabinono-1,4- 78.0 1.3 2.7E-05 43.4 1.8 21 466-486 233-253 (259)
49 COG1319 CoxM Aerobic-type carb 75.1 8.8 0.00019 38.2 6.8 75 74-152 3-80 (284)
50 PF02913 FAD-oxidase_C: FAD li 66.3 6.5 0.00014 37.4 3.7 21 466-486 225-245 (248)
51 TIGR01679 bact_FAD_ox FAD-link 64.6 3.6 7.8E-05 43.4 1.6 25 463-488 389-413 (419)
52 TIGR01677 pln_FAD_oxido plant- 60.4 5.6 0.00012 43.5 2.2 22 466-487 482-503 (557)
53 KOG4730 D-arabinono-1, 4-lacto 55.0 6.4 0.00014 41.2 1.4 21 466-486 485-505 (518)
54 COG4981 Enoyl reductase domain 55.0 22 0.00047 38.2 5.3 106 25-148 111-224 (717)
55 TIGR00387 glcD glycolate oxida 49.9 8.7 0.00019 40.4 1.5 28 459-486 383-411 (413)
56 PRK11282 glcE glycolate oxidas 48.0 11 0.00024 38.7 1.9 22 465-486 323-345 (352)
57 PF02601 Exonuc_VII_L: Exonucl 43.8 35 0.00076 34.4 4.8 57 43-106 18-86 (319)
58 PRK11230 glycolate oxidase sub 40.7 14 0.0003 40.0 1.3 25 465-489 447-471 (499)
59 COG1519 KdtA 3-deoxy-D-manno-o 35.0 2.1E+02 0.0045 30.1 8.7 35 72-106 259-293 (419)
60 TIGR01676 GLDHase galactonolac 31.9 28 0.00061 37.9 2.0 20 468-487 515-534 (541)
61 PLN02465 L-galactono-1,4-lacto 31.6 29 0.00062 38.2 2.0 23 463-487 542-564 (573)
62 PRK00286 xseA exodeoxyribonucl 31.4 57 0.0012 34.5 4.2 57 43-106 139-203 (438)
63 COG4359 Uncharacterized conser 31.2 52 0.0011 30.6 3.2 25 86-110 78-102 (220)
64 PLN02805 D-lactate dehydrogena 30.8 28 0.00061 38.1 1.8 35 457-491 515-550 (555)
65 KOG3282 Uncharacterized conser 30.6 67 0.0015 29.6 3.8 36 65-102 118-153 (190)
66 COG0351 ThiD Hydroxymethylpyri 30.2 1E+02 0.0023 30.3 5.4 93 42-161 132-227 (263)
67 cd07033 TPP_PYR_DXS_TK_like Py 29.1 88 0.0019 27.9 4.5 29 76-104 126-154 (156)
68 PF07172 GRP: Glycine rich pro 25.8 45 0.00098 27.4 1.7 18 4-21 8-25 (95)
69 PF02779 Transket_pyr: Transke 25.3 1.1E+02 0.0023 28.0 4.4 32 75-106 139-172 (178)
70 PF03392 OS-D: Insect pheromon 22.9 52 0.0011 27.0 1.6 14 472-485 79-92 (95)
71 PRK04322 peptidyl-tRNA hydrola 22.7 1.9E+02 0.0041 24.5 5.0 37 72-108 46-83 (113)
72 cd02875 GH18_chitobiase Chitob 22.7 2.6E+02 0.0057 28.7 7.1 81 4-104 2-84 (358)
73 PF03941 INCENP_ARK-bind: Inne 22.2 22 0.00048 26.1 -0.6 27 457-486 19-45 (57)
74 PF15608 PELOTA_1: PELOTA RNA 22.1 1.1E+02 0.0024 25.4 3.3 34 73-106 55-89 (100)
75 COG2144 Selenophosphate synthe 20.7 2E+02 0.0043 28.8 5.3 48 45-105 242-290 (324)
76 TIGR00237 xseA exodeoxyribonuc 20.7 73 0.0016 33.8 2.6 62 43-106 133-198 (432)
77 PF01981 PTH2: Peptidyl-tRNA h 20.6 2E+02 0.0044 24.2 4.9 37 72-108 49-86 (116)
78 cd02429 PTH2_like Peptidyl-tRN 20.3 1.9E+02 0.0042 24.6 4.6 31 72-102 54-84 (116)
No 1
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=2.2e-37 Score=325.86 Aligned_cols=216 Identities=22% Similarity=0.249 Sum_probs=180.1
Q ss_pred CCeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcCCHHHHHHHHHHHH--HcCCcEEEEcCCCCCCCCCcccCCC
Q 040771 42 SDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAK--QAGLELRIRSGGHDYDGLSYISTVP 119 (496)
Q Consensus 42 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~ 119 (496)
.+.+.+ ++..++.+. ..|+......|.+|++|+|++||+++|++|+ +++++|++||+|||+.|.+... +
T Consensus 40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~--~ 110 (525)
T PLN02441 40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP--G 110 (525)
T ss_pred CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC--C
Confidence 455553 244565543 2577777789999999999999999999997 6699999999999999887654 4
Q ss_pred eEEEEcCCCCC-------eEEcCCCCEEEEeCCccHHHHHHHHHhcCCcccc-ccCCCCccccccccccCCCCCCccccc
Q 040771 120 FVILDMFNLRS-------IDIDIANETAWVQAGATLGELYFKIANTSKVHAF-PAGVCHSLGVGGHISGGGYGNLLRKYG 191 (496)
Q Consensus 120 g~vIdl~~l~~-------i~id~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~-~~G~~~~vgvgG~~~ggg~g~~s~~~G 191 (496)
|++|||++||+ +++|.+..+|+|++|++|.++.+++.++| ++. ..+.+..++|||.+++||+|..+.+||
T Consensus 111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG 188 (525)
T PLN02441 111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG 188 (525)
T ss_pred eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence 89999999999 36888889999999999999999999998 432 246667889999999999999999999
Q ss_pred cccceeeEEEEEeeCCeEEe-ccCCCccchhhhccccCCCeEEEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHHHH
Q 040771 192 ISVDNVIDAQLVDVKGRILN-RESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQ 269 (496)
Q Consensus 192 ~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~a~rG~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (496)
..+|+|+++|||+++|++++ +..+|+|||||+||| +|+|||||++|+|++|.|+...++.+.+....++.+.++.+.
T Consensus 189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li 266 (525)
T PLN02441 189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLI 266 (525)
T ss_pred cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHH
Confidence 99999999999999999998 667789999999999 799999999999999999876665565554444444444443
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=2.8e-33 Score=292.60 Aligned_cols=195 Identities=18% Similarity=0.280 Sum_probs=170.0
Q ss_pred ccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEe
Q 040771 65 KFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQ 143 (496)
Q Consensus 65 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~ 143 (496)
+|+.+....|.+|++|+|++||+++|++|++++++++++|+|||+.+.+.. ++++|||++||+| ++|+++++|+|+
T Consensus 6 nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~~---~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 6 NWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIACT---DGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred eCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCccC---CeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 488878889999999999999999999999999999999999999876543 3799999999997 899999999999
Q ss_pred CCccHHHHHHHHHhcCCccccc-cCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-ccCCCccchh
Q 040771 144 AGATLGELYFKIANTSKVHAFP-AGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-RESMGEDLFW 221 (496)
Q Consensus 144 aG~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~ 221 (496)
||+++.+|.+.|.++|+ .++ .|.++.++|||++++|+||. +..||..+|+|+++++|++||++++ +..+++||||
T Consensus 83 aG~~l~~L~~~L~~~Gl--~l~~~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~~~~dlf~ 159 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGY--SMSNLGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEERNADVFQ 159 (438)
T ss_pred CCCCHHHHHHHHHHcCC--EecCCCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCCCChhHHH
Confidence 99999999999999994 444 68889999999999999996 7899999999999999999999998 5566899999
Q ss_pred hhccccCCCeEEEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHHHHHH
Q 040771 222 AIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYV 271 (496)
Q Consensus 222 a~rG~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (496)
|.+|+ .|+|||||++|||++|........ .. ....+++..|.+.
T Consensus 160 a~~~~-~G~lGIIt~vtl~l~p~~~l~~~~--~~---~~~~~~~~~~~~~ 203 (438)
T TIGR01678 160 AARVS-LGCLGIIVTVTIQVVPQFHLQETS--FV---STLKELLDNWDSH 203 (438)
T ss_pred HHhcC-CCceEeeEEEEEEEEeccceEEEE--ec---CCHHHHHHHHHHH
Confidence 99999 799999999999999987644321 11 2344566666654
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=8.9e-33 Score=295.18 Aligned_cols=194 Identities=21% Similarity=0.274 Sum_probs=169.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGE 150 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~ 150 (496)
..|.+||+|+|++||+++|++|+++++|+++||||||+.|.+... .++++|||++||+| ++|+++.+++||||+++.+
T Consensus 132 ~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~~G~~~~~-~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~ 210 (555)
T PLN02805 132 NIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSIEGHTLAP-HGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLE 210 (555)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCccCC-CCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHH
Confidence 469999999999999999999999999999999999999876643 35899999999998 6999999999999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEec--c----CCCccchhhhc
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNR--E----SMGEDLFWAIR 224 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~~--~----~~~~dLf~a~r 224 (496)
|+++|.++| +.+|...++.++|||.++++++|..+.+||.++|+|+++|||++||++++. . ..++||||+++
T Consensus 211 L~~~L~~~G--l~~p~~p~~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~ 288 (555)
T PLN02805 211 LNEYLEPYG--LFFPLDPGPGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVI 288 (555)
T ss_pred HHHHHHHcC--CEeCCCCccccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhc
Confidence 999999999 556666667789999999999999999999999999999999999999962 1 24689999999
Q ss_pred cccCCCeEEEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHHHH
Q 040771 225 GGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQ 269 (496)
Q Consensus 225 G~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (496)
|+ .|+|||||+++||++|.|+......+.|+..+++.+++....
T Consensus 289 Gs-eGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 289 GS-EGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred cC-CCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 99 799999999999999999876666666665555555555543
No 4
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=2.3e-32 Score=287.59 Aligned_cols=177 Identities=18% Similarity=0.210 Sum_probs=162.0
Q ss_pred ccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEe
Q 040771 65 KFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQ 143 (496)
Q Consensus 65 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~ 143 (496)
+|+.+....|..+++|+|++||+++|+.|++++++|+++|+|||+.+.+... +.+|||++||+| ++|+++++|+|+
T Consensus 53 NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t~---g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 53 NWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLSR---AGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred ccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccCC---CeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 5999888999999999999999999999999999999999999999876643 457999999997 899999999999
Q ss_pred CCccHHHHHHHHHhcCCccccc-cCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-ccCCCccchh
Q 040771 144 AGATLGELYFKIANTSKVHAFP-AGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-RESMGEDLFW 221 (496)
Q Consensus 144 aG~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~ 221 (496)
||+++.+|.+.|.++| ++++ .|++..++|||.+++|+||.. ..||..+|+|++++||+++|++++ +..+++||||
T Consensus 130 AG~~l~~L~~~L~~~G--lal~n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 206 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYG--ITLQNFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKDKDPELFF 206 (541)
T ss_pred CCCCHHHHHHHHHHcC--CEeccCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCCCCHHHHH
Confidence 9999999999999999 4444 488899999999999999985 579999999999999999999998 5567899999
Q ss_pred hhccccCCCeEEEEEEEEEEEeeCcee
Q 040771 222 AIRGGGGASFGVILAWKIKLVAVPEKV 248 (496)
Q Consensus 222 a~rG~g~g~~GIVt~~t~~l~p~~~~~ 248 (496)
|+||| +|+|||||++|||+.|.+...
T Consensus 207 Aargs-lG~LGVItevTLr~~Pa~~l~ 232 (541)
T TIGR01676 207 LARCG-LGGLGVVAEVTLQCVERQELV 232 (541)
T ss_pred HHhcC-CCceEeEEEEEEEEEecccee
Confidence 99999 799999999999999998753
No 5
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=1.3e-31 Score=284.67 Aligned_cols=198 Identities=21% Similarity=0.250 Sum_probs=170.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccH
Q 040771 70 STPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATL 148 (496)
Q Consensus 70 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~ 148 (496)
....|.+|++|+|++||+++|++|+++++|+++||+||++.|.+... .++++|||++||+| ++|+++++++||||+++
T Consensus 52 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~-~~gividl~~ln~I~~id~~~~~v~VeaGv~~ 130 (499)
T PRK11230 52 YRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL-EKGVLLVMARFNRILDINPVGRRARVQPGVRN 130 (499)
T ss_pred cCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC-CCcEEEEcccCCCceEEcCCCCEEEEcCCccH
Confidence 34689999999999999999999999999999999999988765533 24899999999997 89999999999999999
Q ss_pred HHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEecc-----CCCccchhhh
Q 040771 149 GELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRE-----SMGEDLFWAI 223 (496)
Q Consensus 149 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~~~-----~~~~dLf~a~ 223 (496)
.+|.++|.++|+.++..+++...++|||.+++++.|..+.+||...|+|+++|||++||++++.. ..++||+|++
T Consensus 131 ~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~ 210 (499)
T PRK11230 131 LAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALF 210 (499)
T ss_pred HHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhh
Confidence 99999999999654444556667899999999999999999999999999999999999999832 2478999999
Q ss_pred ccccCCCeEEEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHHHH
Q 040771 224 RGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQ 269 (496)
Q Consensus 224 rG~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (496)
+|+ .|+|||||++|||++|.|+....+.+.+...+++.+++..+.
T Consensus 211 ~Gs-~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 211 TGS-EGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccC-CCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 999 799999999999999999876666666654455555555443
No 6
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=1.5e-31 Score=285.08 Aligned_cols=180 Identities=22% Similarity=0.250 Sum_probs=159.0
Q ss_pred ccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEc-CCCCCCCCCcccC-CCeEEEEcCCCCC-eEEcCCCCEEE
Q 040771 65 KFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRS-GGHDYDGLSYIST-VPFVILDMFNLRS-IDIDIANETAW 141 (496)
Q Consensus 65 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~g-gGh~~~g~~~~~~-~~g~vIdl~~l~~-i~id~~~~~v~ 141 (496)
+|+.+....|.+|++|+|++||+++|++|+++++||+++| +||++.+.+...+ +++++|||++||+ +++|+++++|+
T Consensus 23 nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~tVt 102 (557)
T TIGR01677 23 AFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAMTVT 102 (557)
T ss_pred hcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCCEEE
Confidence 4999999999999999999999999999999999999996 6999877654332 2369999999999 59999999999
Q ss_pred EeCCccHHHHHHHHHhcCCcccccc-CCCCccccccccccCCCCCCc-cccccccceeeEEEEEeeCC------eEEe-c
Q 040771 142 VQAGATLGELYFKIANTSKVHAFPA-GVCHSLGVGGHISGGGYGNLL-RKYGISVDNVIDAQLVDVKG------RILN-R 212 (496)
Q Consensus 142 v~aG~~~~~l~~~l~~~g~~l~~~~-G~~~~vgvgG~~~ggg~g~~s-~~~G~~~D~v~~~~vV~~~G------~~v~-~ 212 (496)
|+||+++.+|.+.|.++| ++++. +.+..++|||.+.+|+||... +.||..+|+|++++||++|| ++++ +
T Consensus 103 V~AG~~l~~L~~~L~~~G--lal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~~s 180 (557)
T TIGR01677 103 VESGMSLRELIVEAEKAG--LALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRILS 180 (557)
T ss_pred ECCCCcHHHHHHHHHHcC--CEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEEeC
Confidence 999999999999999999 44444 456678999999999999766 58899999999999999998 7777 5
Q ss_pred cCCCccchhhhccccCCCeEEEEEEEEEEEeeCce
Q 040771 213 ESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEK 247 (496)
Q Consensus 213 ~~~~~dLf~a~rG~g~g~~GIVt~~t~~l~p~~~~ 247 (496)
..+++|||||+||| +|+|||||++|||++|.+..
T Consensus 181 ~~~~~dLf~a~rgs-lG~lGVVtevTL~~~P~~~~ 214 (557)
T TIGR01677 181 EGDTPNEFNAAKVS-LGVLGVISQVTLALQPMFKR 214 (557)
T ss_pred CCCCHHHHHhhccC-CCccEeeeEEEEEEEccccc
Confidence 56789999999999 79999999999999998763
No 7
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=99.97 E-value=4e-31 Score=276.05 Aligned_cols=175 Identities=21% Similarity=0.316 Sum_probs=155.5
Q ss_pred ccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEe
Q 040771 65 KFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQ 143 (496)
Q Consensus 65 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~ 143 (496)
+|+......|.+|++|+|++||+++|+.|++ |++++|+|||+.+.+.. ++++|||++||+| ++|+++++|+||
T Consensus 3 nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~~---~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 3 NWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLACT---DGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred CCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCcccC---CCEEEEhhHcCCceeecCCCCEEEEc
Confidence 4888778899999999999999999999974 79999999999876542 3799999999997 899999999999
Q ss_pred CCccHHHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-ccCCCccchhh
Q 040771 144 AGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-RESMGEDLFWA 222 (496)
Q Consensus 144 aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~a 222 (496)
||+++.+|.+.|.++|+.+.. .|.+..++|||.+.+|+||. +..||..+|+|++++||++||++++ +..+++|||||
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~-~~~~~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~~~~dLf~a 154 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLEN-QGDIDPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEGDDQDMYLA 154 (419)
T ss_pred CCCCHHHHHHHHHHcCCcccc-CCCCCCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCCCCHHHHHH
Confidence 999999999999999954322 35666789999999999997 5689999999999999999999998 56678999999
Q ss_pred hccccCCCeEEEEEEEEEEEeeCcee
Q 040771 223 IRGGGGASFGVILAWKIKLVAVPEKV 248 (496)
Q Consensus 223 ~rG~g~g~~GIVt~~t~~l~p~~~~~ 248 (496)
+||| +|+|||||++|||++|.....
T Consensus 155 ~~g~-~G~lGVIt~vtl~~~p~~~~~ 179 (419)
T TIGR01679 155 ARVS-LGALGVISQVTLQTVALFRLR 179 (419)
T ss_pred HHhC-CCceEEEEEEEEEeecceEeE
Confidence 9999 799999999999999987643
No 8
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.97 E-value=3e-30 Score=269.66 Aligned_cols=192 Identities=22% Similarity=0.265 Sum_probs=165.4
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHHHHH
Q 040771 77 ILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELYFKI 155 (496)
Q Consensus 77 vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~~~l 155 (496)
||+|+|++||+++|++|+++++|++++|+|||+.|.+... +++++|||++||+| ++|+++.+++||||+++.+|.++|
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~-~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l 79 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPE-EGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAV 79 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCC-CCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHH
Confidence 5789999999999999999999999999999988766544 35899999999998 899999999999999999999999
Q ss_pred HhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEec------cCCCccchhhhccccCC
Q 040771 156 ANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNR------ESMGEDLFWAIRGGGGA 229 (496)
Q Consensus 156 ~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~~------~~~~~dLf~a~rG~g~g 229 (496)
.++|+.+++.+++...++|||.+.+++.|..+.+||..+|+|++++||++||++++. ...++||+|.++|+ .|
T Consensus 80 ~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs-~G 158 (413)
T TIGR00387 80 EEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGS-EG 158 (413)
T ss_pred HHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccC-Cc
Confidence 999955433455566788999999999999999999999999999999999999972 23467999999999 79
Q ss_pred CeEEEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHHHHH
Q 040771 230 SFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQY 270 (496)
Q Consensus 230 ~~GIVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (496)
+|||||+++||++|.|+....+.+.+...+++.+++..+.+
T Consensus 159 tlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~ 199 (413)
T TIGR00387 159 TLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA 199 (413)
T ss_pred cceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh
Confidence 99999999999999998766666666655566666655543
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.97 E-value=9.7e-30 Score=257.34 Aligned_cols=182 Identities=25% Similarity=0.334 Sum_probs=153.1
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEcCCC-CCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHHHHHHhcC
Q 040771 82 HESHVQATVICAKQAGLELRIRSGGH-DYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELYFKIANTS 159 (496)
Q Consensus 82 s~~dv~~~v~~a~~~~~~~~~~ggGh-~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~~~l~~~g 159 (496)
.++||+++|++|+++++|++++|||| ++.+.+. .+++|||++||+| ++|+++.+|+|+||+++.+|.+.|.++|
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~~~----~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G 78 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGRAL----AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAG 78 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCCCC----CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcC
Confidence 47999999999999999999999997 4666532 2579999999997 8999999999999999999999999999
Q ss_pred CccccccC-CCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEec------cCCCccchhhhccccCCCeE
Q 040771 160 KVHAFPAG-VCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNR------ESMGEDLFWAIRGGGGASFG 232 (496)
Q Consensus 160 ~~l~~~~G-~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~~------~~~~~dLf~a~rG~g~g~~G 232 (496)
+.+++.++ .+..++|||++++|++|..+.+||..+|+|+++++|++||++++. +..++||||+++|+ .|+||
T Consensus 79 ~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs-~GtLG 157 (352)
T PRK11282 79 QMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS-LGTLG 157 (352)
T ss_pred CeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC-Cchhh
Confidence 76655443 445689999999999999999999999999999999999999972 23568999999999 79999
Q ss_pred EEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHHHH
Q 040771 233 VILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQ 269 (496)
Q Consensus 233 IVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (496)
|||++|||++|.|+....+...++ ..++.+.+..|.
T Consensus 158 Vitevtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 158 VLLEVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred hheEEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999999986554444433 234445555554
No 10
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.97 E-value=3.8e-29 Score=248.91 Aligned_cols=226 Identities=23% Similarity=0.326 Sum_probs=171.9
Q ss_pred HHHHHHHHHhhhh---hccCCCcccHhhhcccCCCCCCCCCCeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcC
Q 040771 5 ISLLLVTMSSIFL---SVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAK 81 (496)
Q Consensus 5 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~ 81 (496)
++++|++.+++.. +.--.+.+++..-|..++ .+.+-.. +.....+ .++ |+. ..+..|.+|+.|+
T Consensus 5 ~~lflI~~l~~i~~~~p~~~ks~~~~~~~l~~~~------~~~~~~~-~~~~a~~-s~d-Fg~----~~~~~P~aVL~P~ 71 (505)
T KOG1231|consen 5 LRLFLITLLSIIKLITPVITKSSESLKKILGNSL------EGTLESD-PSSVAHA-STD-FGN----RTQLPPLAVLFPS 71 (505)
T ss_pred HHHHHHHHHHHHhcccchhhccCcchhhhcCccc------cceeecc-chhhhhh-hhh-ccc----cCCCCCeeEEcCC
Confidence 4455555555432 223356667777777655 3333321 1112222 112 222 3347899999999
Q ss_pred CHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCCCcccCCCeEEE--EcC-CCCCe-EEcCCCCEEEEeCCccHHHHHHHH
Q 040771 82 HESHVQATVICAKQA--GLELRIRSGGHDYDGLSYISTVPFVIL--DMF-NLRSI-DIDIANETAWVQAGATLGELYFKI 155 (496)
Q Consensus 82 s~~dv~~~v~~a~~~--~~~~~~~ggGh~~~g~~~~~~~~g~vI--dl~-~l~~i-~id~~~~~v~v~aG~~~~~l~~~l 155 (496)
|++||+.++|+|... ++|+++||+|||..|.+.... +|++| +++ .|+++ .+..+...+.|.||..|-+|.+++
T Consensus 72 S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~~-~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t 150 (505)
T KOG1231|consen 72 SVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALATR-GGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYT 150 (505)
T ss_pred CHHHHHHHHHHHhccCCcceeeccCCcccccCccccCC-CCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHH
Confidence 999999999999999 899999999999999987532 47665 444 46665 456666899999999999999999
Q ss_pred HhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-ccCCCccchhhhccccCCCeEEE
Q 040771 156 ANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-RESMGEDLFWAIRGGGGASFGVI 234 (496)
Q Consensus 156 ~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~a~rG~g~g~~GIV 234 (496)
.++|..-..+.-.-+ .+|||.++.+|+|..+.+||...+||++++||+++|++++ +...|++||.++-|| .|+||||
T Consensus 151 ~e~GL~p~swtDyl~-ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r~n~~lf~~vlGg-lGqfGII 228 (505)
T KOG1231|consen 151 LEYGLSPFSWTDYLP-LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKRANSNLFFLVLGG-LGQFGII 228 (505)
T ss_pred HHcCCCccCcCCccc-eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccccCceeeeeeecc-CcceeeE
Confidence 999931122222223 8899999999999999999999999999999999999998 667899999999999 8999999
Q ss_pred EEEEEEEEeeCc
Q 040771 235 LAWKIKLVAVPE 246 (496)
Q Consensus 235 t~~t~~l~p~~~ 246 (496)
|+++++|+|+|+
T Consensus 229 TrArI~le~aP~ 240 (505)
T KOG1231|consen 229 TRARIKLEPAPK 240 (505)
T ss_pred EEEEEEeccCCc
Confidence 999999999993
No 11
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.96 E-value=2.4e-29 Score=267.02 Aligned_cols=184 Identities=29% Similarity=0.383 Sum_probs=162.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccH
Q 040771 70 STPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATL 148 (496)
Q Consensus 70 ~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~ 148 (496)
....|.+|+.|+|++||+++|++|+++++||++||+|||+.|.+... ++++|||++||+| ++|+++++++|+||+++
T Consensus 28 ~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~--~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l 105 (459)
T COG0277 28 YRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD--GGVVLDLSRLNRILEIDPEDGTATVQAGVTL 105 (459)
T ss_pred hcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC--CcEEEEchhhcchhccCcCCCEEEEcCCccH
Confidence 34678899999999999999999999999999999999999887655 3899999999998 79999999999999999
Q ss_pred HHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe--c----cCCCccchhh
Q 040771 149 GELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN--R----ESMGEDLFWA 222 (496)
Q Consensus 149 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~--~----~~~~~dLf~a 222 (496)
.+|.++|.++|+.+++.+++...++|||++++|++|..+.+||..+|+|+++++|++||++++ . +.++.||+++
T Consensus 106 ~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l 185 (459)
T COG0277 106 EDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTAL 185 (459)
T ss_pred HHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHh
Confidence 999999999996654445555589999999999999999999999999999999999999997 1 2345799999
Q ss_pred hccccCCCeEEEEEEEEEEEeeCceeEEEEEecc
Q 040771 223 IRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKT 256 (496)
Q Consensus 223 ~rG~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~ 256 (496)
..|+ .|+|||||++|+|++|.|+........+.
T Consensus 186 ~iGs-~GtlGiit~~tl~l~p~~~~~~~~~~~~~ 218 (459)
T COG0277 186 FVGS-EGTLGIITEATLKLLPLPETKATAVAGFP 218 (459)
T ss_pred cccC-CccceEEEEEEEEeccCCchheEEEEeCC
Confidence 9988 79999999999999999876554444443
No 12
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.96 E-value=1.3e-28 Score=261.37 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=159.1
Q ss_pred ccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEe
Q 040771 65 KFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQ 143 (496)
Q Consensus 65 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~ 143 (496)
+|+++....|.+++.|+|++||+++|++|+++++||+++|+|||+.+.+..+ +.+|||++|++| ++|+++++|+|+
T Consensus 88 NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~td---~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 88 NWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAFSR---EGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred ccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeeeCC---CEEEECcCCCCcEEEeCCCCEEEEc
Confidence 5999999999999999999999999999999999999999999998776543 457899999996 899999999999
Q ss_pred CCccHHHHHHHHHhcCCccccc-cCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-ccCCCccchh
Q 040771 144 AGATLGELYFKIANTSKVHAFP-AGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-RESMGEDLFW 221 (496)
Q Consensus 144 aG~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~ 221 (496)
||+++.+|.+.|.++| ++++ .|.....+|||.+.+|+||.. ..+|..+|+|++++||+++|++++ +..+++||||
T Consensus 165 AG~~l~~L~~~L~~~G--Lal~n~g~I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~~~pdLF~ 241 (573)
T PLN02465 165 AGARVQQVVEALRPHG--LTLQNYASIREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKEDDPELFR 241 (573)
T ss_pred cCCCHHHHHHHHHHcC--CEeccCCCCCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCCCCHHHHh
Confidence 9999999999999999 4444 366678899999999999975 468999999999999999999987 5566799999
Q ss_pred hhccccCCCeEEEEEEEEEEEeeCcee
Q 040771 222 AIRGGGGASFGVILAWKIKLVAVPEKV 248 (496)
Q Consensus 222 a~rG~g~g~~GIVt~~t~~l~p~~~~~ 248 (496)
+.|++ .|.|||||++|||+.|..+..
T Consensus 242 aar~g-lG~lGVIteVTLql~P~~~L~ 267 (573)
T PLN02465 242 LARCG-LGGLGVVAEVTLQCVPAHRLV 267 (573)
T ss_pred Hhhcc-CCCCcEEEEEEEEEEecCceE
Confidence 99999 799999999999999998743
No 13
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.94 E-value=4.6e-27 Score=209.14 Aligned_cols=136 Identities=35% Similarity=0.544 Sum_probs=125.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCC-eEEcCCCCEEEEeCCccHHHHH
Q 040771 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRS-IDIDIANETAWVQAGATLGELY 152 (496)
Q Consensus 74 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~-i~id~~~~~v~v~aG~~~~~l~ 152 (496)
|.+|++|+|++||+++|++|+++++|++++|+||++.+.+. ..++++|||++|++ +++|+++++++|+||++|.+|+
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~--~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~ 78 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS--DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLY 78 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS--STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc--cCCcEEEeeccccccccccccceeEEEeccccchhcc
Confidence 78999999999999999999999999999999999997765 23589999999999 6899999999999999999999
Q ss_pred HHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe
Q 040771 153 FKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN 211 (496)
Q Consensus 153 ~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~ 211 (496)
++|.++|+.+.+.++.+..++|||++.+|++|..++.||..+|+|+++++|++||++++
T Consensus 79 ~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~ 137 (139)
T PF01565_consen 79 EALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVR 137 (139)
T ss_dssp HHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEE
T ss_pred cccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEE
Confidence 99999985554557888889999999999999999999999999999999999999986
No 14
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=5.3e-25 Score=220.01 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=141.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCC-CCCeEEcCCCCEEEEeCCccHHH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFN-LRSIDIDIANETAWVQAGATLGE 150 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~-l~~i~id~~~~~v~v~aG~~~~~ 150 (496)
..|.+++.|+|++||++++++|+++++|+.++|+|||+... ..+.++++|||++ |+.|++ ++.+++|+||+.|.+
T Consensus 29 g~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~--d~g~~gvvI~l~~~l~~i~~--~~~~v~v~aG~~~~~ 104 (298)
T PRK13905 29 GPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVR--DGGIRGVVIRLGKGLNEIEV--EGNRITAGAGAPLIK 104 (298)
T ss_pred ceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEec--CCCcceEEEEecCCcceEEe--cCCEEEEECCCcHHH
Confidence 57899999999999999999999999999999999997643 2222489999998 998854 456899999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeCCeEEeccCCCccchhhhccccCC
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGA 229 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g 229 (496)
|.++|.++| + .|.+..++++| ++||+++++++.|| ..+|+|+++++|++||++++... .|++|++|+++.+
T Consensus 105 L~~~l~~~G--l---~gle~~~gipG-TVGGai~~NaG~~G~~~~d~v~~v~vv~~~G~~~~~~~--~e~~~~yR~s~~~ 176 (298)
T PRK13905 105 LARFAAEAG--L---SGLEFAAGIPG-TVGGAVFMNAGAYGGETADVLESVEVLDRDGEIKTLSN--EELGFGYRHSALQ 176 (298)
T ss_pred HHHHHHHcC--C---CcchhccCCCc-chhHHHHHcCCcCceEhheeEEEEEEEeCCCCEEEEEH--HHcCCcCccccCC
Confidence 999999998 5 57888899999 78999999999998 79999999999999999998433 6999999998554
Q ss_pred -CeEEEEEEEEEEEeeC
Q 040771 230 -SFGVILAWKIKLVAVP 245 (496)
Q Consensus 230 -~~GIVt~~t~~l~p~~ 245 (496)
.+||||+++||++|..
T Consensus 177 ~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 177 EEGLIVLSATFQLEPGD 193 (298)
T ss_pred CCCEEEEEEEEEEcCCC
Confidence 3899999999999873
No 15
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.91 E-value=2.9e-23 Score=215.74 Aligned_cols=202 Identities=15% Similarity=0.162 Sum_probs=164.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCC----CeEEEEcCCCCCe-EEcCCCCEEEEeCC
Q 040771 71 TPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTV----PFVILDMFNLRSI-DIDIANETAWVQAG 145 (496)
Q Consensus 71 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~----~g~vIdl~~l~~i-~id~~~~~v~v~aG 145 (496)
...|.+||+|.|++||+++|++|+++++||++||||+++.|.++..+. ++|+|||++||+| +|| ++.+++|+||
T Consensus 36 ~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePG 114 (564)
T PRK11183 36 QGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPG 114 (564)
T ss_pred CCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCC
Confidence 357999999999999999999999999999999999999988776432 3799999999998 688 5678999999
Q ss_pred ccHHHHHHHHHhcCCccccccCC-CCccccccccccCCCCCCccccccccceeeEEEEEeeCCeE-------Ee--c---
Q 040771 146 ATLGELYFKIANTSKVHAFPAGV-CHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRI-------LN--R--- 212 (496)
Q Consensus 146 ~~~~~l~~~l~~~g~~l~~~~G~-~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~-------v~--~--- 212 (496)
+++.+|.++|.++|+......|+ |-.++|||.++.+.-|....+||...++++. ++|+++|++ +. .
T Consensus 115 Vtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e 193 (564)
T PRK11183 115 TTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPE 193 (564)
T ss_pred CcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHH
Confidence 99999999999999543221233 3345788999999999999999999999999 999999999 32 1
Q ss_pred ------cCCCc----------------------------------cchhhh--ccccCCCeEEEEEEEEEEEeeCceeEE
Q 040771 213 ------ESMGE----------------------------------DLFWAI--RGGGGASFGVILAWKIKLVAVPEKVTL 250 (496)
Q Consensus 213 ------~~~~~----------------------------------dLf~a~--rG~g~g~~GIVt~~t~~l~p~~~~~~~ 250 (496)
+..+. |+...+ .|+ .|.+||| +++++++|.|+...+
T Consensus 194 ~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGs-eGkLgV~-avrLdtfp~p~~~~v 271 (564)
T PRK11183 194 EILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGC-AGKLAVF-AVRLDTFPAEKNTQV 271 (564)
T ss_pred HHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCC-CceEEEE-EEEeccccCCCcceE
Confidence 11123 666666 788 7999999 999999999998888
Q ss_pred EEEeccchhhHHHHHHHHHHHCCCCC
Q 040771 251 FKVDKTLAQGATDVLYKWQYVAPKLP 276 (496)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~p 276 (496)
|.+.++..+.+.++..........+|
T Consensus 272 f~ig~n~~~~~~~~rr~il~~~~~lP 297 (564)
T PRK11183 272 FYIGTNDPAVLTEIRRHILANFKNLP 297 (564)
T ss_pred EEEeCCCHHHHHHHHHHHHHhCCCCc
Confidence 88888766667677766655434444
No 16
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.88 E-value=8e-22 Score=196.89 Aligned_cols=180 Identities=24% Similarity=0.284 Sum_probs=156.2
Q ss_pred cccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeC
Q 040771 66 FLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQA 144 (496)
Q Consensus 66 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~a 144 (496)
|.....++.+-|-+|+|++||.++|+.|+++|.++++.|.|||..+..+.+ |.+|++..||++ ++|++..++||++
T Consensus 42 fPdr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~ctd---g~lisl~~lnkVv~~dpe~~tvTV~a 118 (518)
T KOG4730|consen 42 FPDRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVCTD---GLLISLDKLNKVVEFDPELKTVTVQA 118 (518)
T ss_pred cCchhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCcceecc---ccEEEhhhhccceeeCchhceEEecc
Confidence 333344567778899999999999999999999999999999998876654 699999999996 8999999999999
Q ss_pred CccHHHHHHHHHhcCCccccc-cCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-ccCCCccchhh
Q 040771 145 GATLGELYFKIANTSKVHAFP-AGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-RESMGEDLFWA 222 (496)
Q Consensus 145 G~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~a 222 (496)
|+++.||.+++++.| ++++ .|+...++|||++..|.||.....|+.....+....++.++|.++. +++.+||+|.|
T Consensus 119 GirlrQLie~~~~~G--lsL~~~~si~e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e~dpe~F~A 196 (518)
T KOG4730|consen 119 GIRLRQLIEELAKLG--LSLPNAPSISEQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEEKDPELFNA 196 (518)
T ss_pred CcCHHHHHHHHHhcC--ccccCCCceecceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEecccCCHHHHhh
Confidence 999999999999998 5544 5888889999999999999877767777777777888889998776 66778999999
Q ss_pred hccccCCCeEEEEEEEEEEEeeCceeEEE
Q 040771 223 IRGGGGASFGVILAWKIKLVAVPEKVTLF 251 (496)
Q Consensus 223 ~rG~g~g~~GIVt~~t~~l~p~~~~~~~~ 251 (496)
.+-+ .|.+|||.++||++.|.-+....+
T Consensus 197 AkvS-LG~LGVIs~VTl~~vp~Fk~s~t~ 224 (518)
T KOG4730|consen 197 AKVS-LGVLGVISQVTLSVVPAFKRSLTY 224 (518)
T ss_pred hhhc-ccceeEEEEEEEEEEecceeeeEE
Confidence 9999 899999999999999987654443
No 17
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.88 E-value=5.2e-22 Score=197.85 Aligned_cols=162 Identities=19% Similarity=0.150 Sum_probs=136.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCC-CCCeEEcCCCCEEEEeCCccHH
Q 040771 71 TPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFN-LRSIDIDIANETAWVQAGATLG 149 (496)
Q Consensus 71 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~-l~~i~id~~~~~v~v~aG~~~~ 149 (496)
...|.++++|+|++||++++++|+++++|+.++|+|||.... +.+.++++|++++ ++.+.++ +.+++|+||+.|.
T Consensus 33 gg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~--d~g~~gvVI~l~~~~~~i~~~--~~~v~v~AG~~~~ 108 (302)
T PRK14652 33 GGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVA--DAGVRGVVLRLPQDFPGESTD--GGRLVLGAGAPIS 108 (302)
T ss_pred CCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeec--CCCEeeEEEEecCCcceEEec--CCEEEEECCCcHH
Confidence 367899999999999999999999999999999999998632 2223489999976 5556543 4699999999999
Q ss_pred HHHHHHHhcCCccccccCCCCccccccccccCCCCCCcc-ccccccceeeEEEEEeeCCeEEeccCCCccchhhhccccC
Q 040771 150 ELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLR-KYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGG 228 (496)
Q Consensus 150 ~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~-~~G~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~ 228 (496)
+|.+++.++| | .|.++.+||+| +.||+..++++ ++|.++|+|+++++|+++| +++.. ..|+.|+||++..
T Consensus 109 ~L~~~~~~~G--L---~GlE~l~gIPG-TvGGav~mNaGa~ggei~d~v~~v~vv~~~G-~~~~~--~~e~~f~YR~s~~ 179 (302)
T PRK14652 109 RLPARAHAHG--L---VGMEFLAGIPG-TLGGAVAMNAGTKLGEMKDVVTAVELATADG-AGFVP--AAALGYAYRTCRL 179 (302)
T ss_pred HHHHHHHHcC--C---cccccccCCCc-chhHHHHHcCCCCceEhhheEEEEEEECCCC-cEEee--hhhcCcccceecc
Confidence 9999999998 6 59999999999 88899888886 5668999999999999999 44432 2799999999744
Q ss_pred CCeEEEEEEEEEEEeeC
Q 040771 229 ASFGVILAWKIKLVAVP 245 (496)
Q Consensus 229 g~~GIVt~~t~~l~p~~ 245 (496)
+..||||+++||++|..
T Consensus 180 ~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 180 PPGAVITRVEVRLRPGD 196 (302)
T ss_pred CCCeEEEEEEEEEecCC
Confidence 44489999999999853
No 18
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=7.2e-22 Score=197.25 Aligned_cols=162 Identities=14% Similarity=0.150 Sum_probs=138.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHH
Q 040771 71 TPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGE 150 (496)
Q Consensus 71 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~ 150 (496)
...|.++++|+|++||++++++|+++++|+.++|+|||+... ..+.++++|+|++|++|+++ +.+++|+||+.|.+
T Consensus 34 gg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~--d~g~~GvvI~l~~l~~i~~~--~~~v~v~aG~~~~~ 109 (305)
T PRK12436 34 GGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIK--DGGIRGITVSLIHITGVTVT--GTTIVAQCGAAIID 109 (305)
T ss_pred CceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEe--CCCeeEEEEEeCCcCcEEEe--CCEEEEEeCCcHHH
Confidence 456999999999999999999999999999999999998733 22234899999889998776 45899999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeCCeEEeccCCCccchhhhccccCC
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGA 229 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g 229 (496)
|.+++.++| | .|.+..+|++| +.||+.+++++.|| ...|.+.+++|+++||++++... .|+.|+||.+...
T Consensus 110 L~~~~~~~g--l---~Gle~~~giPG-tVGGav~~NAGayG~~~~dvl~~v~vv~~~G~v~~~~~--~e~~f~YR~s~~~ 181 (305)
T PRK12436 110 VSRIALDHN--L---TGLEFACGIPG-SVGGALYMNAGAYGGEISFVLTEAVVMTGDGELRTLTK--EAFEFGYRKSVFA 181 (305)
T ss_pred HHHHHHHcC--C---ccchhhcCCcc-chhHHHHhcCccchhehheeeeEEEEEeCCCCEEEEEH--HHhcCcCCCCcCC
Confidence 999999998 5 47777778888 57788888899999 66788899999999999998543 6899999987543
Q ss_pred -CeEEEEEEEEEEEee
Q 040771 230 -SFGVILAWKIKLVAV 244 (496)
Q Consensus 230 -~~GIVt~~t~~l~p~ 244 (496)
...||++++||+.+.
T Consensus 182 ~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 182 NNHYIILEARFELEEG 197 (305)
T ss_pred CCCEEEEEEEEEEcCC
Confidence 257999999999874
No 19
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.87 E-value=1.1e-21 Score=194.23 Aligned_cols=162 Identities=19% Similarity=0.169 Sum_probs=140.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHH
Q 040771 71 TPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGE 150 (496)
Q Consensus 71 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~ 150 (496)
...|.++++|+|++||++++++|+++++|+.++|+|||+.... ...++++|++++|+++.+++ +.+++|+||+.|.+
T Consensus 10 gg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d--~~~~gvvi~l~~~~~~~~~~-~~~v~v~aG~~~~~ 86 (284)
T TIGR00179 10 GGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILD--DGRGGVIINLGKGIDIEDDE-GEYVHVGGGENWHK 86 (284)
T ss_pred CceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEcc--CCcCeEEEECCCCceEEEec-CCEEEEEcCCcHHH
Confidence 3578999999999999999999999999999999999988653 23358999999999887766 57999999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccc-eeeEEEEEeeCCeEEeccCCCccchhhhccccCC
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVD-NVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGA 229 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D-~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g 229 (496)
|.+++.++| | .|.+..+|++| ++||+++++++.||...+ .|+++++|++||++++... .|+.|+||-+...
T Consensus 87 l~~~~~~~G--l---~GlE~l~giPG-tvGGai~mNAGayG~~i~d~l~~v~vv~~~G~~~~~~~--~~~~f~YR~S~f~ 158 (284)
T TIGR00179 87 LVKYALKNG--L---SGLEFLAGIPG-TVGGAVIMNAGAYGVEISEVLVYATILLATGKTEWLTN--EQLGFGYRTSIFQ 158 (284)
T ss_pred HHHHHHHCC--C---cccccCCCCCc-hHHHHHHHhcccchhehhheEEEEEEEeCCCCEEEEEH--HHccccCCccccC
Confidence 999999998 6 69999999999 799999999999998765 7899999999999987443 7999999977432
Q ss_pred C-e-EEEEEEEEEEEe
Q 040771 230 S-F-GVILAWKIKLVA 243 (496)
Q Consensus 230 ~-~-GIVt~~t~~l~p 243 (496)
. . .||++++|++.+
T Consensus 159 ~~~~~iil~a~~~l~~ 174 (284)
T TIGR00179 159 HKYVGLVLKAEFQLTL 174 (284)
T ss_pred CCCcEEEEEEEEEecc
Confidence 2 1 699999999844
No 20
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=1.6e-21 Score=194.77 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=139.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHHH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGEL 151 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~l 151 (496)
..+.++++|+|++||++++++|+++++|+.++|+|||.... ..+.+|++|++++|++|+++. .+++||||+.|.+|
T Consensus 35 G~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~--d~g~~GvvI~l~~l~~i~~~~--~~v~v~aG~~~~~l 110 (307)
T PRK13906 35 GNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIR--EGGIRGIVISLLSLDHIEVSD--DAIIAGSGAAIIDV 110 (307)
T ss_pred ceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeec--CCCcceEEEEecCccceEEeC--CEEEEECCCcHHHH
Confidence 56889999999999999999999999999999999998733 222348999998999998763 48999999999999
Q ss_pred HHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeCCeEEeccCCCccchhhhccccCCC
Q 040771 152 YFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGAS 230 (496)
Q Consensus 152 ~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g~ 230 (496)
.+++.++| | .|.+..+||+| +.||+..++++.|| .++|+|+++++|+++|++++... .|+.|+||.+....
T Consensus 111 ~~~~~~~G--l---~GlE~~~gIPG-tVGGav~mNaGayGg~i~D~l~~v~vv~~~G~~~~~~~--~e~~f~YR~S~~~~ 182 (307)
T PRK13906 111 SRVARDYA--L---TGLEFACGIPG-SIGGAVYMNAGAYGGEVKDCIDYALCVNEQGSLIKLTT--KELELDYRNSIIQK 182 (307)
T ss_pred HHHHHHcC--C---ccchhhcCCCc-cHhHHHHhhCCcchhhhhhheeEEEEEeCCCCEEEEEH--HHccCcCCcccCCC
Confidence 99999998 5 68888899999 78999999999996 88999999999999999998443 68999999774332
Q ss_pred -eEEEEEEEEEEEe
Q 040771 231 -FGVILAWKIKLVA 243 (496)
Q Consensus 231 -~GIVt~~t~~l~p 243 (496)
--||++++|++.|
T Consensus 183 ~~~ii~~~~~~l~~ 196 (307)
T PRK13906 183 EHLVVLEAAFTLAP 196 (307)
T ss_pred CCEEEEEEEEEECC
Confidence 2499999999986
No 21
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.86 E-value=5.2e-21 Score=193.95 Aligned_cols=164 Identities=18% Similarity=0.192 Sum_probs=140.0
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHH
Q 040771 71 TPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGE 150 (496)
Q Consensus 71 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~ 150 (496)
...+.+++.|+|++||++++++|+++++|+.++|+|||+... +.+.+|+||+++ ++.++++++..+++|+||+.|.+
T Consensus 30 Gg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~--D~g~~GvVI~l~-~~~i~i~~~~~~v~vgAG~~~~~ 106 (363)
T PRK13903 30 GGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIA--DDGFDGTVVRVA-TRGVTVDCGGGLVRAEAGAVWDD 106 (363)
T ss_pred CccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeEC--CCCccEEEEEeC-CCcEEEeCCCCEEEEEcCCCHHH
Confidence 356889999999999999999999999999999999998733 233458999997 58888876667999999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeC-CeEEeccCCCccchhhhccccC
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVK-GRILNRESMGEDLFWAIRGGGG 228 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~-G~~v~~~~~~~dLf~a~rG~g~ 228 (496)
|.+++.++| | .|.+..+||+|.+ ||+.-++.+.|| .++|.|.++++++.+ |++++.. +.||+|+||++..
T Consensus 107 l~~~a~~~G--L---~GlE~laGIPGTV-GGAv~mNaGayG~ei~D~l~sV~vvd~~~G~~~~~~--~~el~f~YR~S~f 178 (363)
T PRK13903 107 VVARTVEAG--L---GGLECLSGIPGSA-GATPVQNVGAYGQEVSDTITRVRLLDRRTGEVRWVP--AADLGFGYRTSVL 178 (363)
T ss_pred HHHHHHHcC--C---ccccccCCCCcch-hhHhhcCCChhHHHHhhhEeEEEEEECCCCEEEEEE--HHHcceecccccc
Confidence 999999998 6 7899999999954 777777888888 569999999999965 9999844 3799999999632
Q ss_pred C--CeEEEEEEEEEEEeeC
Q 040771 229 A--SFGVILAWKIKLVAVP 245 (496)
Q Consensus 229 g--~~GIVt~~t~~l~p~~ 245 (496)
. +++|||+++||++|..
T Consensus 179 ~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 179 KHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred CCCCCEEEEEEEEEEEcCC
Confidence 2 4789999999999863
No 22
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.86 E-value=2.2e-21 Score=189.19 Aligned_cols=187 Identities=20% Similarity=0.251 Sum_probs=166.8
Q ss_pred cccccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEE
Q 040771 62 KNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETA 140 (496)
Q Consensus 62 ~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v 140 (496)
+|.-|-......-..|..|+|+++|++++++|++.++.++++||-++..|.|++- .+.+|++|.+||+| .+|+-.+++
T Consensus 78 ~n~dwm~kyrG~sklvL~Pkst~eVS~ILkYCn~~kLAVVPQGGNTgLVGgSVPv-fDEiVlsl~~mNKi~sfDevsGil 156 (511)
T KOG1232|consen 78 FNTDWMKKYRGQSKLVLKPKSTEEVSAILKYCNDRKLAVVPQGGNTGLVGGSVPV-FDEIVLSLGLMNKILSFDEVSGIL 156 (511)
T ss_pred hhhHHHHhccCCceEEecCCCHHHHHHHHHhhccccEEEecCCCCcccccCcccc-hHHHhhhhhhhccccccccccceE
Confidence 4556776667788899999999999999999999999999999999988877643 45799999999998 799999999
Q ss_pred EEeCCccHHHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe------ccC
Q 040771 141 WVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN------RES 214 (496)
Q Consensus 141 ~v~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~------~~~ 214 (496)
+|++|+.+.++..+|+++|+.+++..|.-.++-|||.+++++-|..--+||...-+|+++|+|+|+|+++. .+.
T Consensus 157 ~cdaG~ILen~d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDN 236 (511)
T KOG1232|consen 157 KCDAGVILENADNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDN 236 (511)
T ss_pred EeccceEehhhHHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccC
Confidence 99999999999999999997666667888888899999999999999999999999999999999999986 344
Q ss_pred CCccchhhhccccCCCeEEEEEEEEEEEeeCceeEE
Q 040771 215 MGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTL 250 (496)
Q Consensus 215 ~~~dLf~a~rG~g~g~~GIVt~~t~~l~p~~~~~~~ 250 (496)
++.|+-....|+ .|++||||.+++-+.|.|+.+..
T Consensus 237 TgydlkhLFIGS-EGtlGVvT~vSil~~~kpksvn~ 271 (511)
T KOG1232|consen 237 TGYDLKHLFIGS-EGTLGVVTKVSILAPPKPKSVNV 271 (511)
T ss_pred ccccchhheecC-CceeeEEeeEEEeecCCCcceeE
Confidence 568999999999 89999999999999999886543
No 23
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.83 E-value=9.4e-20 Score=178.13 Aligned_cols=201 Identities=21% Similarity=0.171 Sum_probs=164.8
Q ss_pred cccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCC-C-eE-EEEcCCCCCe-EEcCCCCEEE
Q 040771 66 FLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTV-P-FV-ILDMFNLRSI-DIDIANETAW 141 (496)
Q Consensus 66 ~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~-~-g~-vIdl~~l~~i-~id~~~~~v~ 141 (496)
|-......|+.||-|++.+||.++|+.|.+|++-+.+.|||+|..+.-..+.+ . .+ -+|++.||+| -+|.++-|+.
T Consensus 153 regkf~RiPDiVvWP~chdevVkiv~lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~ 232 (613)
T KOG1233|consen 153 REGKFPRIPDIVVWPKCHDEVVKIVELAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCR 232 (613)
T ss_pred hcCccCCCCceEecccchHHHHHHHHHHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEE
Confidence 45566789999999999999999999999999999999999997755433322 2 33 3788999997 6899999999
Q ss_pred EeCCccHHHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-----ccCCC
Q 040771 142 VQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-----RESMG 216 (496)
Q Consensus 142 v~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-----~~~~~ 216 (496)
+++|+.-.+|.+.|.+.|+..+-.+-+..-.++||++..-+.|+--..||.+-|.|+-+++|++.|.+-+ .-+.+
T Consensus 233 ~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~Cq~PRmS~G 312 (613)
T KOG1233|consen 233 AEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQCQVPRMSSG 312 (613)
T ss_pred EecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhhcCCcccCC
Confidence 9999999999999999984432223333446899999999999999999999999999999999998875 23457
Q ss_pred ccchhhhccccCCCeEEEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHH
Q 040771 217 EDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYK 267 (496)
Q Consensus 217 ~dLf~a~rG~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~ 267 (496)
||+-.-+-|+ .|++||||++|+|++|.|+....-.+.|+..+.....++.
T Consensus 313 PDihh~IlGS-EGTLGVitEvtiKirPiPe~~ryGS~aFPNFEqGV~f~RE 362 (613)
T KOG1233|consen 313 PDIHHIILGS-EGTLGVITEVTIKIRPIPEVKRYGSFAFPNFEQGVNFFRE 362 (613)
T ss_pred CCcceEEecc-CcceeEEEEEEEEEeechhhhhcCccccCcHHHHHHHHHH
Confidence 9999999999 8999999999999999998766555666654443344443
No 24
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=1.7e-19 Score=179.37 Aligned_cols=163 Identities=20% Similarity=0.174 Sum_probs=134.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCC-CeEEcCCCCEEEEeCCccHHH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLR-SIDIDIANETAWVQAGATLGE 150 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~-~i~id~~~~~v~v~aG~~~~~ 150 (496)
....+++.|+|++||++++++|+++++|+.++|+|||+... +.+.+|+||++++++ ++..+.+..+++|+||+.|.+
T Consensus 19 g~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~--d~g~~GvVI~l~~~~~~i~~~~~~~~v~v~AG~~~~~ 96 (295)
T PRK14649 19 GPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVR--DEGFDGLVARYRGQRWELHEHGDTAEVWVEAGAPMAG 96 (295)
T ss_pred ceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEe--CCCcCeEEEEecCCCcEEEEeCCcEEEEEEcCCcHHH
Confidence 46678999999999999999999999999999999998866 233458999998754 666665555899999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccC-CCCCCccccccccceeeEEEEEeeCCeEEeccCCCccchhhhccccCC
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGG-GYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGA 229 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gg-g~g~~s~~~G~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g 229 (496)
|.+++.++| | .|.++.+||+| ++|| .+++.+...+.++|.|.++++++.+|++++... .||+|+||-+..-
T Consensus 97 l~~~~~~~G--L---~GlE~l~GIPG-TvGGa~~mNaGayg~ei~d~l~~V~~~~~~g~~~~~~~--~el~f~YR~S~~~ 168 (295)
T PRK14649 97 TARRLAAQG--W---AGLEWAEGLPG-TIGGAIYGNAGCYGGDTATVLIRAWLLLNGSECVEWSV--HDFAYGYRTSVLK 168 (295)
T ss_pred HHHHHHHcC--C---ccccccCCCCc-chhHHHHhhccccceEhheeEEEEEEEeCCCCEEEEeH--HHcCcccceeecc
Confidence 999999998 6 78899999999 6666 555555555588999999999999999987433 5999999977433
Q ss_pred Ce---------EEEEEEEEEEEee
Q 040771 230 SF---------GVILAWKIKLVAV 244 (496)
Q Consensus 230 ~~---------GIVt~~t~~l~p~ 244 (496)
.. -||++++|++.+.
T Consensus 169 ~~~~~~~~~~~~ii~~~~~~l~~~ 192 (295)
T PRK14649 169 QLRADGITWRPPLVLAARFRLHRD 192 (295)
T ss_pred cccccccccCCeEEEEEEEEECCC
Confidence 21 2999999999875
No 25
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.75 E-value=1.1e-17 Score=165.89 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=136.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHHH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGEL 151 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~l 151 (496)
...++++.|+|.+|+++++++|++ ++|+.+.|+|+|.... +.+.+++||.+++|+.++++. ..++|+||+.|.+|
T Consensus 32 G~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~--d~g~~gvVI~l~~~~~i~i~~--~~v~v~AG~~l~~L 106 (297)
T PRK14653 32 GPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPK--DEPMDFVVVSTERLDDIFVDN--DKIICESGLSLKKL 106 (297)
T ss_pred cEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEe--cCCccEEEEEeCCcCceEEeC--CEEEEeCCCcHHHH
Confidence 456689999999999999999999 9999999999998865 233458999997899998763 58999999999999
Q ss_pred HHHHHhcCCccccccCCCCccccccccccCCCCCCcccccc-ccceeeEEEEEeeCCeEEeccCCCccchhhhccccCCC
Q 040771 152 YFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGI-SVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGAS 230 (496)
Q Consensus 152 ~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~-~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g~ 230 (496)
.+++.++| | .|.+..+||+| +.||+.-++++.||. ++|.|.++++++ +|++++... .|+.|.||-+..+.
T Consensus 107 ~~~~~~~G--L---~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~~V~~~d-~g~v~~~~~--~e~~f~YR~S~~~~ 177 (297)
T PRK14653 107 CLVAAKNG--L---SGFENAYGIPG-SVGGAVYMNAGAYGWETAENIVEVVAYD-GKKIIRLGK--NEIKFSYRNSIFKE 177 (297)
T ss_pred HHHHHHCC--C---cchhhhcCCch-hHHHHHHHhCccCchhhheeEEEEEEEC-CCEEEEEch--hhccccCccccCCC
Confidence 99999998 6 89999999999 588888889999997 899999999999 788877433 58999999764332
Q ss_pred --eEEEEEEEEEEEeeC
Q 040771 231 --FGVILAWKIKLVAVP 245 (496)
Q Consensus 231 --~GIVt~~t~~l~p~~ 245 (496)
--|||+++||+.|..
T Consensus 178 ~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 178 EKDLIILRVTFKLKKGN 194 (297)
T ss_pred CCcEEEEEEEEEEecCC
Confidence 129999999998853
No 26
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.2e-16 Score=155.50 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=143.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHH
Q 040771 71 TPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGE 150 (496)
Q Consensus 71 ~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~ 150 (496)
......++.|++.+|+.++++++.+.++|+.+.|+|+|..-. +.+.++++|.+..++.++++.+...+++++|+.|.+
T Consensus 18 Gg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~--d~g~~gvvi~~~~~~~~~~~~~~~~i~a~aG~~~~~ 95 (291)
T COG0812 18 GGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVR--DGGIGGVVIKLGKLNFIEIEGDDGLIEAGAGAPWHD 95 (291)
T ss_pred CcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEe--cCCCceEEEEcccccceeeeccCCeEEEccCCcHHH
Confidence 356779999999999999999999999999999999997644 344468999999999988877777999999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeCCeEEeccCCCccchhhhccccCC
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGA 229 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g 229 (496)
|.+++.++| + .|.+..+||+| +.||..-++.+.|| .+.|.+.++++++.+|++.+... .||-|+||-+...
T Consensus 96 l~~~~~~~g--l---~GlE~l~gIPG-svGgav~mNaGAyG~Ei~d~~~~v~~ld~~G~~~~l~~--~el~f~YR~S~f~ 167 (291)
T COG0812 96 LVRFALENG--L---SGLEFLAGIPG-SVGGAVIMNAGAYGVEISDVLVSVEVLDRDGEVRWLSA--EELGFGYRTSPFK 167 (291)
T ss_pred HHHHHHHcC--C---cchhhhcCCCc-ccchhhhccCcccccchheeEEEEEEEcCCCCEEEEEH--HHhCcccccCcCC
Confidence 999999998 6 89999999999 66778888899998 57999999999999999998443 7999999977443
Q ss_pred Ce-EEEEEEEEEEEee
Q 040771 230 SF-GVILAWKIKLVAV 244 (496)
Q Consensus 230 ~~-GIVt~~t~~l~p~ 244 (496)
.- .||++++|++.|-
T Consensus 168 ~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 168 KEYLVVLSVEFKLTKG 183 (291)
T ss_pred CCCEEEEEEEEEeCCC
Confidence 33 8999999999885
No 27
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.70 E-value=1.3e-16 Score=157.78 Aligned_cols=162 Identities=17% Similarity=0.142 Sum_probs=137.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccC-CCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYIST-VPFVILDMFNLRSIDIDIANETAWVQAGATLGE 150 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~-~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~ 150 (496)
.....++.|+|.+|+++++++++++++|+.+.|+|+|.... +.+ .+++||.+.+|+.++++. ..++|+||+.|.+
T Consensus 31 G~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~--D~g~~~g~vi~~~~~~~i~~~~--~~v~a~AG~~~~~ 106 (302)
T PRK14650 31 GISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILIN--DEEEIDFPIIYTGHLNKIEIHD--NQIVAECGTNFED 106 (302)
T ss_pred cEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEE--CCCccceEEEEECCcCcEEEeC--CEEEEEeCCcHHH
Confidence 45668999999999999999999999999999999997754 222 357899886799998764 4799999999999
Q ss_pred HHHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeCCeEEeccCCCccchhhhccccCC
Q 040771 151 LYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGA 229 (496)
Q Consensus 151 l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g 229 (496)
|.+++.++| | .|.+..+||+| +.||+.-++.+.|| .++|.|.++++++.+|++++... .|+.|+||-+...
T Consensus 107 l~~~~~~~g--l---~GlE~l~gIPG-TVGGAv~mNAGayG~ei~d~l~sV~~~d~~g~~~~~~~--~e~~f~YR~S~f~ 178 (302)
T PRK14650 107 LCKFALQNE--L---SGLEFIYGLPG-TLGGAIWMNARCFGNEISEILDKITFIDEKGKTICKKF--KKEEFKYKISPFQ 178 (302)
T ss_pred HHHHHHHcC--C---chhhhhcCCCc-chhHHHHhhCCccccchheeEEEEEEEECCCCEEEEEH--HHcCcccccccCC
Confidence 999999998 6 89999999999 67778888899998 67999999999999999987433 7899999977432
Q ss_pred C-eEEEEEEEEEEEeeC
Q 040771 230 S-FGVILAWKIKLVAVP 245 (496)
Q Consensus 230 ~-~GIVt~~t~~l~p~~ 245 (496)
. -.||++++|++.|..
T Consensus 179 ~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 179 NKNTFILKATLNLKKGN 195 (302)
T ss_pred CCCEEEEEEEEEEcCCC
Confidence 2 259999999998754
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.69 E-value=1.6e-16 Score=159.49 Aligned_cols=161 Identities=16% Similarity=0.128 Sum_probs=136.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEc--CCC-CEEEEeCCccH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDID--IAN-ETAWVQAGATL 148 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id--~~~-~~v~v~aG~~~ 148 (496)
.....++.|+|++|+++++++|+++++|+.+.|+|+|.... + +.+|++|.+ +|+.++++ .++ ..++++||+.|
T Consensus 19 G~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~--D-~~~g~vI~~-~~~~~~~~~~~~~~~~v~a~AG~~~ 94 (334)
T PRK00046 19 ARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFT--E-DFDGTVLLN-RIKGIEVLSEDDDAWYLHVGAGENW 94 (334)
T ss_pred cEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEEC--C-CCCEEEEEe-cCCceEEEecCCCeEEEEEEcCCcH
Confidence 45668999999999999999999999999999999997755 2 356899987 48998873 222 27999999999
Q ss_pred HHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeC-CeEEeccCCCccchhhhccc
Q 040771 149 GELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVK-GRILNRESMGEDLFWAIRGG 226 (496)
Q Consensus 149 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~-G~~v~~~~~~~dLf~a~rG~ 226 (496)
.+|.+++.++| | .|.+..+||+| +.||+.-++.+.|| .++|.|.++++++.+ |++++... .|+.|+||-+
T Consensus 95 ~~l~~~~~~~g--l---~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~v~d~~~g~~~~~~~--~e~~f~YR~S 166 (334)
T PRK00046 95 HDLVLWTLQQG--M---PGLENLALIPG-TVGAAPIQNIGAYGVELKDVCDYVEALDLATGEFVRLSA--AECRFGYRDS 166 (334)
T ss_pred HHHHHHHHHcC--c---hhhHHhcCCCc-chhHHHHhcCCcCcccHheeEEEEEEEECCCCcEEEEEH--HHcCcccccc
Confidence 99999999998 6 89999999999 67788888899998 678999999999988 99887443 7999999977
Q ss_pred cCCC----eEEEEEEEEEEEee
Q 040771 227 GGAS----FGVILAWKIKLVAV 244 (496)
Q Consensus 227 g~g~----~GIVt~~t~~l~p~ 244 (496)
.... --||++++|++.|-
T Consensus 167 ~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 167 IFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCCCCCcCCEEEEEEEEEecCC
Confidence 4432 23999999999885
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=1e-15 Score=153.36 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=134.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEE---cCCCCEEEEeCCccH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDI---DIANETAWVQAGATL 148 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~i---d~~~~~v~v~aG~~~ 148 (496)
.....++.|+|.+|+++++++++++++|+.+.|+|+|.... +.+.+|+||.+.+|+.+++ +.+...++|++|+.|
T Consensus 28 G~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~--D~g~~G~VI~l~~~~~i~i~~~~~~~~~v~agAG~~~ 105 (354)
T PRK14648 28 GAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIA--DEGVPGLMLSLRRFRSLHTQTQRDGSVLVHAGAGLPV 105 (354)
T ss_pred cEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEe--CCCccEEEEEeCCcCceEEeeccCCcEEEEEEeCCcH
Confidence 45668999999999999999999999999999999997754 3334689999977998875 222247999999999
Q ss_pred HHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEE--------------------eeCC
Q 040771 149 GELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLV--------------------DVKG 207 (496)
Q Consensus 149 ~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV--------------------~~~G 207 (496)
.+|.+++.++| | .|.+..+||+| +.||+.-++.+.|| .+.|.|.+++++ +.+|
T Consensus 106 ~~Lv~~~~~~g--l---~GlE~laGIPG-TVGGAv~mNAGAyG~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~~~~~~~g 179 (354)
T PRK14648 106 AALLAFCAHHA--L---RGLETFAGLPG-SVGGAAYMNARCYGRAIADCFHSARTLVLHPVRSRAKELPEVRKNAQDKRG 179 (354)
T ss_pred HHHHHHHHHcC--C---cchhhhcCCCc-chhhHhhhcCCccceEhhheEEEEEEEeccCcccccccccccccccccCCC
Confidence 99999999998 6 89999999999 66777777899998 678999999999 4567
Q ss_pred eE-------------EeccCCCccchhhhccccCCC---------eEEEEEEEEEEEeeC
Q 040771 208 RI-------------LNRESMGEDLFWAIRGGGGAS---------FGVILAWKIKLVAVP 245 (496)
Q Consensus 208 ~~-------------v~~~~~~~dLf~a~rG~g~g~---------~GIVt~~t~~l~p~~ 245 (496)
++ ++. ...|+.|+||-+..-. --||++++|++.|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~--~~~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 180 ECLGLDGGPFTCSSFQTV--FARAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ceecccccccccccceEe--cHHHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 76 222 2378999999774432 139999999998753
No 30
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=99.58 E-value=5.7e-16 Score=110.37 Aligned_cols=47 Identities=38% Similarity=0.823 Sum_probs=33.6
Q ss_pred cccccCCCCCCCCCCCCCcchhhhhhcccccCCcHHHHHHHHhccCCCCCCCCCCCCC
Q 040771 434 TYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIP 491 (496)
Q Consensus 434 ~Y~Nyad~~~~~~~~~~~s~~~~~~~g~~yyg~n~~RL~~vK~kYDP~nvF~~~~~I~ 491 (496)
+|+||+|.+++ ...|...|||+||+||++||++|||+|||++.|+||
T Consensus 1 aY~Ny~d~~~~-----------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~ 47 (47)
T PF08031_consen 1 AYVNYPDPDLP-----------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP 47 (47)
T ss_dssp --TTS--GGGG-----------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred CcccCCCCccc-----------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence 59999997642 136888999999999999999999999999999997
No 31
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.52 E-value=8.9e-14 Score=135.76 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=121.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCC-CCCeEEcCCCCEEEEeCCccHHHHH
Q 040771 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFN-LRSIDIDIANETAWVQAGATLGELY 152 (496)
Q Consensus 74 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~-l~~i~id~~~~~v~v~aG~~~~~l~ 152 (496)
...++ |+|.+|+++++ ++|+.+.|+|+|..-. +.+.+++||.+.+ ++.++++. +|+||+.|.+|.
T Consensus 21 A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~--D~g~~g~vI~l~~~~~~~~~~~-----~a~AG~~~~~l~ 86 (273)
T PRK14651 21 AELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVS--DAGVPERVIRLGGEFAEWDLDG-----WVGGGVPLPGLV 86 (273)
T ss_pred EEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEc--CCCcceEEEEECCcceeEeECC-----EEECCCcHHHHH
Confidence 34556 99999999988 5899999999997754 3334589998865 66665532 699999999999
Q ss_pred HHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeCCeEEeccCCCccchhhhccccCCCe
Q 040771 153 FKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASF 231 (496)
Q Consensus 153 ~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g~~ 231 (496)
+++.++| | .|.+..+||+| +.||+.-++.+.|| .++|.|.++++++ +|++++... .|+.|+||-+....-
T Consensus 87 ~~~~~~g--l---~GlE~l~gIPG-TVGGAv~mNaGayG~ei~d~l~~V~~~~-~g~~~~~~~--~e~~f~YR~S~~~~~ 157 (273)
T PRK14651 87 RRAARLG--L---SGLEGLVGIPA-QVGGAVKMNAGTRFGEMADALHTVEIVH-DGGFHQYSP--DELGFGYRHSGLPPG 157 (273)
T ss_pred HHHHHCC--C---cchhhhcCCCc-chhhHHHhhCCccccChheeEEEEEEEE-CCCEEEEEH--HHccccccccCCCCC
Confidence 9999998 6 79999999999 67777778899998 6789999999997 899887443 799999997743332
Q ss_pred EEEEEEEEEEEee
Q 040771 232 GVILAWKIKLVAV 244 (496)
Q Consensus 232 GIVt~~t~~l~p~ 244 (496)
-||++++|++.|.
T Consensus 158 ~iIl~a~f~l~~~ 170 (273)
T PRK14651 158 HVVTRVRLKLRPS 170 (273)
T ss_pred EEEEEEEEEECCC
Confidence 4999999999875
No 32
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.50 E-value=3.9e-14 Score=139.30 Aligned_cols=126 Identities=24% Similarity=0.331 Sum_probs=110.9
Q ss_pred EEEcCCCCCe-EEcCCCCEEEEeCCccHHHHHHHHHhcCCccccccCCCCccccccccccCCCCCCccccccccceeeEE
Q 040771 122 ILDMFNLRSI-DIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDA 200 (496)
Q Consensus 122 vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~ 200 (496)
-|++..|..| ++|.++.+|+|+|+++++++.++|-+.|+.|++ ...-...++||++.|-|+-..|++||+..|.+.+.
T Consensus 105 ~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV-~~EldDlTvGGLinG~Gies~ShkyGlfq~~~~aY 183 (543)
T KOG1262|consen 105 QVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAV-LPELDDLTVGGLINGVGIESSSHKYGLFQHICTAY 183 (543)
T ss_pred cCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeee-ecccccceecceeeecccccccchhhhHHhhhhee
Confidence 3555545554 789999999999999999999999999977754 34556788999999999999999999999999999
Q ss_pred EEEeeCCeEEe--ccCCCccchhhhccccCCCeEEEEEEEEEEEeeCceeE
Q 040771 201 QLVDVKGRILN--RESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVT 249 (496)
Q Consensus 201 ~vV~~~G~~v~--~~~~~~dLf~a~rG~g~g~~GIVt~~t~~l~p~~~~~~ 249 (496)
|||++||++++ .+.+++|||+|+-.+ .|++|..+.+|+|+.|..+.+.
T Consensus 184 EvVladGelv~~t~dne~sdLfyaiPWS-qGTlgfLVaatiriIkvK~Yvk 233 (543)
T KOG1262|consen 184 EVVLADGELVRVTPDNEHSDLFYAIPWS-QGTLGFLVAATIRIIKVKKYVK 233 (543)
T ss_pred EEEecCCeEEEecCCcccCceEEEcccc-cCchheeeeeEEEEEeccceEE
Confidence 99999999998 455789999999999 8999999999999999988654
No 33
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.25 E-value=3.4e-11 Score=116.63 Aligned_cols=143 Identities=17% Similarity=0.082 Sum_probs=113.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHHH
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGEL 151 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~l 151 (496)
...+.++.|++.+ + ++|+.+.|+|+|..-. +.+. +.+|-+++|+.++++. .+++++||+.|.+|
T Consensus 17 G~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~--D~g~-~~vv~~~~~~~~~~~~--~~v~~~AG~~l~~l 80 (257)
T PRK13904 17 PPLEVLVLEEIDD-F----------SQDGQIIGGANNLLIS--PNPK-NLAILGKNFDYIKIDG--ECLEIGGATKSGKI 80 (257)
T ss_pred ceEEEEEEechhh-h----------CCCeEEEeceeEEEEe--cCCc-cEEEEccCcCeEEEeC--CEEEEEcCCcHHHH
Confidence 3455677788877 5 8999999999997744 2222 3444445788888754 47999999999999
Q ss_pred HHHHHhcCCccccccCCCCccccccccccCCCCCCccccc-cccceeeEEEEEeeCCeEEeccCCCccchhhhccccCCC
Q 040771 152 YFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG-ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGAS 230 (496)
Q Consensus 152 ~~~l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G-~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g~ 230 (496)
.+++.++| | .|.+..+||+| +.||+.-++.+.|| .++|.|.++++++ |+ + ...|+.|+||-+..
T Consensus 81 ~~~~~~~g--l---~GlE~l~gIPG-tVGGAv~mNaGa~g~ei~d~l~~V~~~~--~~-~----~~~e~~f~YR~S~~-- 145 (257)
T PRK13904 81 FNYAKKNN--L---GGFEFLGKLPG-TLGGLVKMNAGLKEYEISNNLESICTNG--GW-I----EKEDIGFGYRSSGI-- 145 (257)
T ss_pred HHHHHHCC--C---chhhhhcCCCc-cHHHHHHhcCCcCccchheeEEEEEEEe--eE-E----eHHHCcccccCcCC--
Confidence 99999998 6 89999999999 66777777889998 6789999999998 42 2 13789999997743
Q ss_pred eEEEEEEEEEEEeeC
Q 040771 231 FGVILAWKIKLVAVP 245 (496)
Q Consensus 231 ~GIVt~~t~~l~p~~ 245 (496)
-.||++++||+.|..
T Consensus 146 ~~iIl~a~f~l~~~~ 160 (257)
T PRK13904 146 NGVILEARFKKTHGF 160 (257)
T ss_pred CcEEEEEEEEECCCC
Confidence 259999999998854
No 34
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=95.56 E-value=0.018 Score=52.94 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=62.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCc-ccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHH
Q 040771 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSY-ISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGEL 151 (496)
Q Consensus 74 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~-~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l 151 (496)
+..+++|+|.+|+.++++ .+-...+.+||++....-. .......+||++++... .|..+++.+++||++++.++
T Consensus 2 ~~~~~~P~sl~ea~~ll~----~~~~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l 77 (171)
T PF00941_consen 2 PFEYFRPKSLEEALELLA----KGPDARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSEL 77 (171)
T ss_dssp S-EEEE-SSHHHHHHHHH----HGTTEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHH
T ss_pred CeEEEccCCHHHHHHHHh----cCCCCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHH
Confidence 446899999999999988 2335789999998542100 11113589999976554 24444679999999999999
Q ss_pred HHH---------HHhcCCccccccCCCCccccccccccCC
Q 040771 152 YFK---------IANTSKVHAFPAGVCHSLGVGGHISGGG 182 (496)
Q Consensus 152 ~~~---------l~~~g~~l~~~~G~~~~vgvgG~~~ggg 182 (496)
.+. |.++-..+ -....-...++||.+..+.
T Consensus 78 ~~~~~~~~~~p~L~~~~~~i-as~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 78 EESPLIQQYFPALAQAARRI-ASPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHHCTS-S-HHHHTT-BHHHHHHHTB
T ss_pred hhcchhhhhHHHHHHHHHHh-CCHhHeeeeeeccccccCc
Confidence 875 22221111 1112234567888875443
No 35
>PRK09799 putative oxidoreductase; Provisional
Probab=94.87 E-value=0.088 Score=51.72 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=83.4
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHHHH
Q 040771 76 AILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELYFK 154 (496)
Q Consensus 76 ~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~~~ 154 (496)
.+..|+|.+|+.++++ +++-...+.+||+..... .......++||++++ .. .|..+++.+++|+++++.++.+.
T Consensus 4 ~y~~P~sl~Ea~~ll~---~~~~~a~ilAGGT~L~~~-~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 4 QFFRPDSVEQALELKR---RYQDEAVWFAGGSKLNAT-PTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred cEeCCCCHHHHHHHHH---hCCCCCEEEecCCChHhh-hCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 4689999999998765 343346789999997422 112224689999975 43 34445679999999999999764
Q ss_pred H------HhcCCccccccCCCCccccccccccCCCCCCccccccccce-----eeEEEEEeeCCeEEeccCCCccchhhh
Q 040771 155 I------ANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDN-----VIDAQLVDVKGRILNRESMGEDLFWAI 223 (496)
Q Consensus 155 l------~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~-----v~~~~vV~~~G~~v~~~~~~~dLf~a~ 223 (496)
. .+.-..+ -.+..-+..+|||.+..+-- .+|. .++.+|+..+++.+.. .|+|-
T Consensus 79 ~~~~~~L~~a~~~v-as~qIRN~aTiGGNl~~a~p---------~sD~~p~LlAldA~v~l~~~r~vpl----~~f~~-- 142 (258)
T PRK09799 79 RFIPAALREALGFV-YSRHLRNQSTIGGEIAARQE---------ESVLLPVLLALDAELVFGNGETLSI----EDYLA-- 142 (258)
T ss_pred cccHHHHHHHHHHh-CCHHHhccchhHHHhhcCCc---------cHHHHHHHHHcCCEEEEecCcEEeH----HHhcC--
Confidence 2 1110000 01123345567777664321 1343 3667777777754422 34442
Q ss_pred ccccCCCeEEEEEEEEE
Q 040771 224 RGGGGASFGVILAWKIK 240 (496)
Q Consensus 224 rG~g~g~~GIVt~~t~~ 240 (496)
|. . =.|||++.+.
T Consensus 143 -g~-~--~Eil~~I~iP 155 (258)
T PRK09799 143 -CP-C--DRLLTEIIIP 155 (258)
T ss_pred -CC-C--CcEEEEEEcC
Confidence 22 1 2488888664
No 36
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=94.31 E-value=0.087 Score=56.25 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=86.6
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-CcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHH
Q 040771 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGL-SYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGEL 151 (496)
Q Consensus 74 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l 151 (496)
..-+++|+|.+|+.++++. +. ...+.+||++..-. .........+||++++..+ .|..+++.+++||++++.++
T Consensus 192 ~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el 267 (467)
T TIGR02963 192 GERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDA 267 (467)
T ss_pred CceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHH
Confidence 4568999999999988763 32 36789999996321 1112223688999986553 23444568999999999999
Q ss_pred HHHHHhcCCccc-----c-ccCCCCccccccccccCCCCCCcccccccccee-----eEE--EEEeeCCeEEeccCCCcc
Q 040771 152 YFKIANTSKVHA-----F-PAGVCHSLGVGGHISGGGYGNLLRKYGISVDNV-----IDA--QLVDVKGRILNRESMGED 218 (496)
Q Consensus 152 ~~~l~~~g~~l~-----~-~~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v-----~~~--~vV~~~G~~v~~~~~~~d 218 (496)
.+.+.++-..|. + ....-+..+|||.+..+.- .+|.. ++. ++...+|+.... - .|
T Consensus 268 ~~~l~~~~p~L~~a~~~ias~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~R~vp-l--~d 335 (467)
T TIGR02963 268 YAALAKRYPELGELLRRFASLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGRRTLP-L--ED 335 (467)
T ss_pred HHHHHHHhHHHHHHHHHhCCHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCcEEEe-H--HH
Confidence 876654310011 1 1233455678887765331 23432 333 444455632211 1 45
Q ss_pred chhhhccccCCCeEEEEEEEEE
Q 040771 219 LFWAIRGGGGASFGVILAWKIK 240 (496)
Q Consensus 219 Lf~a~rG~g~g~~GIVt~~t~~ 240 (496)
+|-.++--....=-||+++.+.
T Consensus 336 F~~g~~kt~L~~~EiI~~I~iP 357 (467)
T TIGR02963 336 FFIDYGKTDRQPGEFVEALHVP 357 (467)
T ss_pred hhcccccccCCCCceEEEEEec
Confidence 5554432111122489988775
No 37
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=93.85 E-value=0.2 Score=49.12 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=80.7
Q ss_pred EEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHHHH-
Q 040771 77 ILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELYFK- 154 (496)
Q Consensus 77 vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~~~- 154 (496)
+++|+|.+|..++++ +++-.-.+.+||+++.-.. ......++||++++ .. .|..+++.+++|+++++.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~-~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~ 78 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATP-TRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNE 78 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhh-cccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCc
Confidence 679999999988765 3433356789999975221 12223588999875 43 23444568999999999998752
Q ss_pred -----HHhcCCccccccCCCCccccccccccCCCCCCccccc--cccceeeEEEEEeeCCeEEeccCCCccchhhhcccc
Q 040771 155 -----IANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYG--ISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGG 227 (496)
Q Consensus 155 -----l~~~g~~l~~~~G~~~~vgvgG~~~ggg~g~~s~~~G--~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g 227 (496)
|.+.-..+ -.+..-+..++||.+..+--. + ...=..++.+|++.+++.+.. .|+|-+ .
T Consensus 79 ~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~a~p~------~D~~~~LlaldA~v~l~~~r~vp~----~dF~~g---~- 143 (257)
T TIGR03312 79 LTPAALKEALGFV-YSRHIRNQATIGGEIAAFQSE------SLLLPVLLALKATVVLANASQMDI----EDYLAS---E- 143 (257)
T ss_pred chHHHHHHHHHHh-CCHHHhccccHHHHhhcCCCc------hHHHHHHHHcCCEEEEecCcEEeH----HHhcCC---C-
Confidence 22211001 112334556788877644311 1 111123566666666643322 344432 2
Q ss_pred CCCeEEEEEEEEE
Q 040771 228 GASFGVILAWKIK 240 (496)
Q Consensus 228 ~g~~GIVt~~t~~ 240 (496)
.+ -+||++.+.
T Consensus 144 ~~--Ell~~V~iP 154 (257)
T TIGR03312 144 QR--ELIVEVIIP 154 (257)
T ss_pred CC--cEEEEEEcC
Confidence 12 488887764
No 38
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=93.85 E-value=0.08 Score=52.98 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=62.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCC-CCcccCCCeEEEEcCCCCCe-EEc-CCCCEEEEeCCccHHHHH
Q 040771 76 AILTAKHESHVQATVICAKQAGLELRIRSGGHDYDG-LSYISTVPFVILDMFNLRSI-DID-IANETAWVQAGATLGELY 152 (496)
Q Consensus 76 ~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g-~~~~~~~~g~vIdl~~l~~i-~id-~~~~~v~v~aG~~~~~l~ 152 (496)
-++.|+|.+|..++++. +. ...+.+||+++.. ..........+||+++++.. .|. .+++.+++|+++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 57899999999988763 22 3578999998631 11112223688999876543 233 234579999999999997
Q ss_pred H--HHHhcCCccc------cccCCCCccccccccccC
Q 040771 153 F--KIANTSKVHA------FPAGVCHSLGVGGHISGG 181 (496)
Q Consensus 153 ~--~l~~~g~~l~------~~~G~~~~vgvgG~~~gg 181 (496)
+ .+.+.-..|. -.+..-+..+|||.+..+
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIGGPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhCCHHHhcceecccccccC
Confidence 5 1211100010 112344556788877654
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=91.44 E-value=0.39 Score=48.67 Aligned_cols=75 Identities=19% Similarity=0.175 Sum_probs=50.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-CcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHH
Q 040771 75 LAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGL-SYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELY 152 (496)
Q Consensus 75 ~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~ 152 (496)
.-++.|+|.+|..++++- ++ .-.+.+||++.... -........+||+.++..+ .|..+++.+++|+++++.++.
T Consensus 5 f~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~ 80 (321)
T TIGR03195 5 FRTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALA 80 (321)
T ss_pred ceEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHh
Confidence 358999999999888763 32 34689999985311 1111223688999876543 233445689999999999985
Q ss_pred H
Q 040771 153 F 153 (496)
Q Consensus 153 ~ 153 (496)
+
T Consensus 81 ~ 81 (321)
T TIGR03195 81 E 81 (321)
T ss_pred h
Confidence 4
No 40
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=91.24 E-value=0.061 Score=53.06 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=24.2
Q ss_pred hhhcccccCCcHHHHHHHHhccCCCCCCCCCCCC
Q 040771 457 EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSI 490 (496)
Q Consensus 457 ~~~g~~yyg~n~~RL~~vK~kYDP~nvF~~~~~I 490 (496)
+.|. .-||+.|+|+++.|++|||.+++.-.|.|
T Consensus 248 ~dW~-~HFG~~W~~f~~~K~~yDP~~IL~PGq~I 280 (281)
T PF09265_consen 248 EDWR-RHFGPKWERFVERKRRYDPKAILAPGQGI 280 (281)
T ss_dssp HHHH-HHHGHHHHHHHHHHHHH-TT--B-GGG-S
T ss_pred HHHH-HHhchHHHHHHHHHHhCCchhhcCCCCCC
Confidence 4685 46789999999999999999999988877
No 41
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=89.32 E-value=0.46 Score=46.80 Aligned_cols=97 Identities=14% Similarity=0.123 Sum_probs=60.0
Q ss_pred cCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-Ccc-cCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHHHH--
Q 040771 80 AKHESHVQATVICAKQAGLELRIRSGGHDYDGL-SYI-STVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELYFK-- 154 (496)
Q Consensus 80 P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~-~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~~~-- 154 (496)
|+|.+|+.++++. +. ...+.+||+++.-. ... ......+||++++... .|..+++.+++|+++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 7888998888764 22 35789999986321 111 0113688999987654 34555679999999999999642
Q ss_pred -------HHhcCCccccccCCCCccccccccccC
Q 040771 155 -------IANTSKVHAFPAGVCHSLGVGGHISGG 181 (496)
Q Consensus 155 -------l~~~g~~l~~~~G~~~~vgvgG~~~gg 181 (496)
|.+.-..+ -.+..-+..++||.+..+
T Consensus 77 i~~~~p~L~~a~~~i-a~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAI-AAPGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHh-cCHHHhcceecHHhccCc
Confidence 11110000 112334556788888654
No 42
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=88.21 E-value=0.27 Score=52.15 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=29.5
Q ss_pred hhhcccccCCcHHHHHHHHhccCCCCCCCCCCCCCC
Q 040771 457 EVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492 (496)
Q Consensus 457 ~~~g~~yyg~n~~RL~~vK~kYDP~nvF~~~~~I~~ 492 (496)
..|...|+++.+++|+++|+.|||+|+|+...-+++
T Consensus 423 ~~~~~~~~~~~~~~~~~~k~~~DP~~i~npg~~~~~ 458 (459)
T COG0277 423 AEFLELEPGEAWALLRAIKRAFDPNGIFNPGKLFRL 458 (459)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCccCCC
Confidence 345556666789999999999999999998777654
No 43
>PLN02906 xanthine dehydrogenase
Probab=84.41 E-value=1.4 Score=53.21 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=55.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-CcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHH
Q 040771 75 LAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGL-SYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELY 152 (496)
Q Consensus 75 ~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~ 152 (496)
..+++|+|.+|+.++++. +. .-++.+||+++.-. ........++||++++..+ .|..++..+++||++++.++.
T Consensus 229 ~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~ 304 (1319)
T PLN02906 229 LTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQ 304 (1319)
T ss_pred ceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHH
Confidence 468999999999987653 22 25678999996321 1112223689999976554 244455689999999999999
Q ss_pred HHHHh
Q 040771 153 FKIAN 157 (496)
Q Consensus 153 ~~l~~ 157 (496)
+.|.+
T Consensus 305 ~~l~~ 309 (1319)
T PLN02906 305 NLFRK 309 (1319)
T ss_pred HHHHH
Confidence 86544
No 44
>PLN00192 aldehyde oxidase
Probab=83.26 E-value=2.7 Score=50.91 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=56.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHH
Q 040771 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELY 152 (496)
Q Consensus 74 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~ 152 (496)
..-++.|+|.+|+.++++.....+-..++..||+++.-.- ......++||++++..+ .|..+++.+++||++++.++.
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k-~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYK-DEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeee-ccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 4468999999999988763210012367788999964221 12223689999976554 344455789999999999998
Q ss_pred HHHHhc
Q 040771 153 FKIANT 158 (496)
Q Consensus 153 ~~l~~~ 158 (496)
+.+...
T Consensus 312 ~~l~~~ 317 (1344)
T PLN00192 312 EALREE 317 (1344)
T ss_pred HHHHhh
Confidence 765543
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=82.42 E-value=2.9 Score=42.63 Aligned_cols=141 Identities=17% Similarity=0.096 Sum_probs=80.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccC-CCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHH
Q 040771 73 KPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYIST-VPFVILDMFNLRSI-DIDIANETAWVQAGATLGE 150 (496)
Q Consensus 73 ~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~-~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~ 150 (496)
.-..++.|.+.+|...++. .+-..++..|++.+.-..+... +-..+|-+.++..+ .|+...+.+++|+|++..+
T Consensus 202 ~~~r~~~P~~l~D~a~l~a----a~P~AtivAGsTDvgLwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~ 277 (493)
T COG4630 202 GDDRFIVPATLADFADLLA----AHPGATIVAGSTDVGLWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQ 277 (493)
T ss_pred CCceeEeeccHHHHHHHHh----hCCCCEEEecCcchhhHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccCccHHH
Confidence 3457899999999998864 2334667778877542211111 11344555555443 3455567999999999999
Q ss_pred HHHHHHhcCCccc--cc-cCCC---CccccccccccCCCCCCcccccccc--ceeeEEEEEeeCCeEEeccCCCccchhh
Q 040771 151 LYFKIANTSKVHA--FP-AGVC---HSLGVGGHISGGGYGNLLRKYGISV--DNVIDAQLVDVKGRILNRESMGEDLFWA 222 (496)
Q Consensus 151 l~~~l~~~g~~l~--~~-~G~~---~~vgvgG~~~ggg~g~~s~~~G~~~--D~v~~~~vV~~~G~~v~~~~~~~dLf~a 222 (496)
.++.|...--.|+ ++ -|+. +.-++||.+..|. .. |-+- =-.++.++++-.|+-.+.-. =.|+|-+
T Consensus 278 a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangS-----PI-GDtPPaLIALgA~ltLr~g~~~RtlP-Le~~Fi~ 350 (493)
T COG4630 278 AYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGS-----PI-GDTPPALIALGATLTLRSGDGRRTLP-LEDYFIA 350 (493)
T ss_pred HHHHHHhhCchHHHHHHHhcchhhhccccccccccCCC-----cC-CCCCchhhhcCcEEEEEecCCccccc-HHHHHHH
Confidence 9999987532221 11 1222 3334555554432 21 2221 12367777777766544111 1467777
Q ss_pred hc
Q 040771 223 IR 224 (496)
Q Consensus 223 ~r 224 (496)
|+
T Consensus 351 Y~ 352 (493)
T COG4630 351 YG 352 (493)
T ss_pred hh
Confidence 75
No 46
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=81.91 E-value=3.2 Score=50.20 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=55.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCC-CcccCCCeEEEEcCCCCCe-EEcCCCCEEEEeCCccHHHHH
Q 040771 75 LAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGL-SYISTVPFVILDMFNLRSI-DIDIANETAWVQAGATLGELY 152 (496)
Q Consensus 75 ~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~-~~~~~~~g~vIdl~~l~~i-~id~~~~~v~v~aG~~~~~l~ 152 (496)
..++.|+|.+|+.++++. +. .-++..||+++.-. .........+||++++..+ .|..++..+++||++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 468999999999988763 22 35678999997421 1111122578999876654 244456789999999999998
Q ss_pred HHHH
Q 040771 153 FKIA 156 (496)
Q Consensus 153 ~~l~ 156 (496)
+.|.
T Consensus 313 ~~l~ 316 (1330)
T TIGR02969 313 DILA 316 (1330)
T ss_pred HHHH
Confidence 8654
No 47
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=81.40 E-value=5.8 Score=38.62 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=20.0
Q ss_pred CcHHHHHHHHhccCCCCCCCCC
Q 040771 466 GNFKKLVEVKTRFDPDNFFKNE 487 (496)
Q Consensus 466 ~n~~RL~~vK~kYDP~nvF~~~ 487 (496)
.++++-++||+++||+++|.+.
T Consensus 176 Pr~~dFlavR~~lDP~G~F~N~ 197 (257)
T PLN00107 176 KKAGEFLKVKERLDPEGLFSSE 197 (257)
T ss_pred cCHHHHHHHHHHhCCCCccCCH
Confidence 5899999999999999999864
No 48
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=77.96 E-value=1.3 Score=43.43 Aligned_cols=21 Identities=24% Similarity=0.616 Sum_probs=16.5
Q ss_pred CcHHHHHHHHhccCCCCCCCC
Q 040771 466 GNFKKLVEVKTRFDPDNFFKN 486 (496)
Q Consensus 466 ~n~~RL~~vK~kYDP~nvF~~ 486 (496)
.++++-+++|+++||+|+|.+
T Consensus 233 p~~~~F~~~r~~~DP~g~F~n 253 (259)
T PF04030_consen 233 PRLDDFLAVRKKLDPQGVFLN 253 (259)
T ss_dssp TTHHHHHHHHHHH-TT-TT--
T ss_pred cCHHHHHHHHHHhCCCCCCCC
Confidence 699999999999999999976
No 49
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=75.09 E-value=8.8 Score=38.15 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=52.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCC-cccCCCeEEEEcCCCCC-e-EEcCCCCEEEEeCCccHHH
Q 040771 74 PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLS-YISTVPFVILDMFNLRS-I-DIDIANETAWVQAGATLGE 150 (496)
Q Consensus 74 p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~-~~~~~~g~vIdl~~l~~-i-~id~~~~~v~v~aG~~~~~ 150 (496)
+..+.+|.|.+|...+++ +++ --.+.+|||++...- .......-+||++++.. . .+..+++.+++||-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 456889999888877765 444 678899999976321 01112367899998752 2 2334566799999999999
Q ss_pred HH
Q 040771 151 LY 152 (496)
Q Consensus 151 l~ 152 (496)
+.
T Consensus 79 i~ 80 (284)
T COG1319 79 IA 80 (284)
T ss_pred HH
Confidence 86
No 50
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=66.32 E-value=6.5 Score=37.38 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=16.8
Q ss_pred CcHHHHHHHHhccCCCCCCCC
Q 040771 466 GNFKKLVEVKTRFDPDNFFKN 486 (496)
Q Consensus 466 ~n~~RL~~vK~kYDP~nvF~~ 486 (496)
+.++-+++||+.+||+|+++-
T Consensus 225 ~~~~~~~~iK~~~DP~~ilNP 245 (248)
T PF02913_consen 225 AALRLMRAIKQAFDPNGILNP 245 (248)
T ss_dssp HHHHHHHHHHHHH-TTS-BST
T ss_pred HHHHHHHHhhhccCCccCCCC
Confidence 479999999999999999863
No 51
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=64.58 E-value=3.6 Score=43.42 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.5
Q ss_pred ccCCcHHHHHHHHhccCCCCCCCCCC
Q 040771 463 YFNGNFKKLVEVKTRFDPDNFFKNEQ 488 (496)
Q Consensus 463 yyg~n~~RL~~vK~kYDP~nvF~~~~ 488 (496)
.|+ ++++.++||++|||+++|.+.+
T Consensus 389 ~YP-~~~~F~~~r~~~DP~g~F~n~~ 413 (419)
T TIGR01679 389 RYP-RWDDFAAVRDDLDPDRRFLNPY 413 (419)
T ss_pred HCc-CHHHHHHHHHHhCCCCccCCHH
Confidence 344 7999999999999999998753
No 52
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=60.38 E-value=5.6 Score=43.54 Aligned_cols=22 Identities=36% Similarity=0.711 Sum_probs=20.0
Q ss_pred CcHHHHHHHHhccCCCCCCCCC
Q 040771 466 GNFKKLVEVKTRFDPDNFFKNE 487 (496)
Q Consensus 466 ~n~~RL~~vK~kYDP~nvF~~~ 487 (496)
.++++.++||+++||+++|.+.
T Consensus 482 P~~~dF~alR~~~DP~g~F~N~ 503 (557)
T TIGR01677 482 PNADKFLKVKDSYDPKGLFSSE 503 (557)
T ss_pred CCHHHHHHHHHhcCCCCccCCH
Confidence 3899999999999999999864
No 53
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=55.04 E-value=6.4 Score=41.20 Aligned_cols=21 Identities=29% Similarity=0.717 Sum_probs=19.5
Q ss_pred CcHHHHHHHHhccCCCCCCCC
Q 040771 466 GNFKKLVEVKTRFDPDNFFKN 486 (496)
Q Consensus 466 ~n~~RL~~vK~kYDP~nvF~~ 486 (496)
.|+++-.++|+++||+++|..
T Consensus 485 ~n~~~flkvr~~lDP~~lFss 505 (518)
T KOG4730|consen 485 KNLDKFLKVRKELDPKGLFSS 505 (518)
T ss_pred cChHHHHHHHHhcCccchhhh
Confidence 699999999999999999964
No 54
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=54.98 E-value=22 Score=38.23 Aligned_cols=106 Identities=18% Similarity=0.316 Sum_probs=67.1
Q ss_pred ccHhhhcccCCCCCCCCCCeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcCCHHHHHHHHHHHHHc-CCcEEEE
Q 040771 25 ESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQA-GLELRIR 103 (496)
Q Consensus 25 ~~~~~~l~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~-~~~~~~~ 103 (496)
..|.+-++++.. +|.|.++.-|-|+-+.+.. ++.. ...+..|-.++.|.|.++|..+|+.|+++ ..||.+.
T Consensus 111 krLv~kara~G~---~I~gvvIsAGIP~le~A~E-lI~~----L~~~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 111 KRLVQKARASGA---PIDGVVISAGIPSLEEAVE-LIEE----LGDDGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred HHHHHHHHhcCC---CcceEEEecCCCcHHHHHH-HHHH----HhhcCceeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 445555566553 4689999999999888753 3211 12346788999999999999999999997 4576553
Q ss_pred -----cCCC-CCCCCCcccCCCeEEEEc-CCCCCeEEcCCCCEEEEeCCccH
Q 040771 104 -----SGGH-DYDGLSYISTVPFVILDM-FNLRSIDIDIANETAWVQAGATL 148 (496)
Q Consensus 104 -----ggGh-~~~g~~~~~~~~g~vIdl-~~l~~i~id~~~~~v~v~aG~~~ 148 (496)
+||| ||... . .+++-+ +.+++ .++-++.+|+|.--
T Consensus 183 ~egGraGGHHSweDl---d---~llL~tYs~lR~----~~NIvl~vGgGiGt 224 (717)
T COG4981 183 WEGGRAGGHHSWEDL---D---DLLLATYSELRS----RDNIVLCVGGGIGT 224 (717)
T ss_pred EecCccCCccchhhc---c---cHHHHHHHHHhc----CCCEEEEecCCcCC
Confidence 3454 46533 1 233322 23332 12335667777754
No 55
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=49.85 E-value=8.7 Score=40.41 Aligned_cols=28 Identities=29% Similarity=0.580 Sum_probs=21.9
Q ss_pred hcccccC-CcHHHHHHHHhccCCCCCCCC
Q 040771 459 YGTKYFN-GNFKKLVEVKTRFDPDNFFKN 486 (496)
Q Consensus 459 ~g~~yyg-~n~~RL~~vK~kYDP~nvF~~ 486 (496)
|-...|+ ..++-|++||+.+||+|+++-
T Consensus 383 ~~~~~~~~~~~~~~~~iK~~fDP~~ilNP 411 (413)
T TIGR00387 383 FMPYKFNEKELETMRAIKKAFDPDNILNP 411 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcCcCCCC
Confidence 4433445 579999999999999999863
No 56
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=47.96 E-value=11 Score=38.73 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=18.6
Q ss_pred CCc-HHHHHHHHhccCCCCCCCC
Q 040771 465 NGN-FKKLVEVKTRFDPDNFFKN 486 (496)
Q Consensus 465 g~n-~~RL~~vK~kYDP~nvF~~ 486 (496)
+.+ .+-.++||++|||.++|+-
T Consensus 323 ~~~~~~l~~~lK~~fDP~~ilnp 345 (352)
T PRK11282 323 PAPLLRIHRRLKQAFDPAGIFNP 345 (352)
T ss_pred CHHHHHHHHHHHHhcCcccCCCC
Confidence 445 6888999999999999974
No 57
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=43.79 E-value=35 Score=34.37 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=39.9
Q ss_pred CeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcCC------HHHHHHHHHHHHHcC------CcEEEEcCC
Q 040771 43 DVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKH------ESHVQATVICAKQAG------LELRIRSGG 106 (496)
Q Consensus 43 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s------~~dv~~~v~~a~~~~------~~~~~~ggG 106 (496)
|.|.-|+...|.+.++.. +.|| +....+++|.. ++++..+++.+.+.+ +=|.+||||
T Consensus 18 ~vITs~~gAa~~D~~~~~--~~r~-----~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG 86 (319)
T PF02601_consen 18 AVITSPTGAAIQDFLRTL--KRRN-----PIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGG 86 (319)
T ss_pred EEEeCCchHHHHHHHHHH--HHhC-----CCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCC
Confidence 455667777888887633 3355 34556777765 689999999998754 557778887
No 58
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=40.72 E-value=14 Score=40.02 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=21.1
Q ss_pred CCcHHHHHHHHhccCCCCCCCCCCC
Q 040771 465 NGNFKKLVEVKTRFDPDNFFKNEQS 489 (496)
Q Consensus 465 g~n~~RL~~vK~kYDP~nvF~~~~~ 489 (496)
++.++-+++||+.+||+|+++-..-
T Consensus 447 ~~~~~~m~~IK~~fDP~~iLNPGk~ 471 (499)
T PRK11230 447 SDEITLFHAVKAAFDPDGLLNPGKN 471 (499)
T ss_pred HHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 3689999999999999999985443
No 59
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=34.98 E-value=2.1e+02 Score=30.13 Aligned_cols=35 Identities=34% Similarity=0.473 Sum_probs=32.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRIRSGG 106 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggG 106 (496)
+....|+.|+-.|-...+.+.++++|+++.-|+.|
T Consensus 259 ~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 259 PNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred CCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 46779999999999999999999999999999998
No 60
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=31.89 E-value=28 Score=37.89 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=18.3
Q ss_pred HHHHHHHHhccCCCCCCCCC
Q 040771 468 FKKLVEVKTRFDPDNFFKNE 487 (496)
Q Consensus 468 ~~RL~~vK~kYDP~nvF~~~ 487 (496)
+++-++|++++||+++|.+.
T Consensus 515 ~d~F~~~R~~lDP~g~F~N~ 534 (541)
T TIGR01676 515 VDASNKARKALDPNKILSNN 534 (541)
T ss_pred HHHHHHHHHHhCCCCccccH
Confidence 78999999999999999764
No 61
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=31.65 E-value=29 Score=38.16 Aligned_cols=23 Identities=17% Similarity=0.462 Sum_probs=20.2
Q ss_pred ccCCcHHHHHHHHhccCCCCCCCCC
Q 040771 463 YFNGNFKKLVEVKTRFDPDNFFKNE 487 (496)
Q Consensus 463 yyg~n~~RL~~vK~kYDP~nvF~~~ 487 (496)
-|+ +++.++|++++||+++|.+.
T Consensus 542 ~YP--~d~F~~~R~~lDP~g~f~N~ 564 (573)
T PLN02465 542 RFP--VDAFNKARKELDPKGILSNN 564 (573)
T ss_pred hCC--HHHHHHHHHHhCCCCccCCH
Confidence 346 99999999999999999764
No 62
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=31.36 E-value=57 Score=34.54 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=39.6
Q ss_pred CeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcCCH------HHHHHHHHHHHHc--CCcEEEEcCC
Q 040771 43 DVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHE------SHVQATVICAKQA--GLELRIRSGG 106 (496)
Q Consensus 43 ~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~------~dv~~~v~~a~~~--~~~~~~~ggG 106 (496)
|.|.-|....+.+.++.. +.||. .-...++|..+ .+|.++++.+.+. .+=|.+||||
T Consensus 139 ~viTs~~gAa~~D~~~~~--~~r~p-----~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 139 GVITSPTGAAIRDILTVL--RRRFP-----LVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred EEEeCCccHHHHHHHHHH--HhcCC-----CCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCC
Confidence 445566777888876632 45663 24566777665 8999999988874 5567888888
No 63
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.20 E-value=52 Score=30.56 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCCC
Q 040771 86 VQATVICAKQAGLELRIRSGGHDYD 110 (496)
Q Consensus 86 v~~~v~~a~~~~~~~~~~ggGh~~~ 110 (496)
....+++++++++||.|.++|..+-
T Consensus 78 fKef~e~ike~di~fiVvSsGm~~f 102 (220)
T COG4359 78 FKEFVEWIKEHDIPFIVVSSGMDPF 102 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCchH
Confidence 3557889999999999999999965
No 64
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=30.80 E-value=28 Score=38.14 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=26.4
Q ss_pred hhhcccccC-CcHHHHHHHHhccCCCCCCCCCCCCC
Q 040771 457 EVYGTKYFN-GNFKKLVEVKTRFDPDNFFKNEQSIP 491 (496)
Q Consensus 457 ~~~g~~yyg-~n~~RL~~vK~kYDP~nvF~~~~~I~ 491 (496)
..|-..+|+ +.++-+++||+.+||+|+++-..=++
T Consensus 515 ~~~l~~~~g~~~~~lm~~IK~a~DP~gILNPGKi~~ 550 (555)
T PLN02805 515 MKYLEKELGIEALQTMKRIKKALDPNNIMNPGKLIP 550 (555)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcCcCCCCCceeC
Confidence 345555555 57999999999999999998654443
No 65
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.60 E-value=67 Score=29.61 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=30.4
Q ss_pred ccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEE
Q 040771 65 KFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRI 102 (496)
Q Consensus 65 r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~ 102 (496)
||-. ...|..||...+++++.++.+.|++.+++..+
T Consensus 118 ~We~--~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 118 RWEN--CGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHHH--cCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 5653 46899999999999999999999999887533
No 66
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=30.23 E-value=1e+02 Score=30.26 Aligned_cols=93 Identities=15% Similarity=0.076 Sum_probs=59.5
Q ss_pred CCeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCCcccCCCeE
Q 040771 42 SDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFV 121 (496)
Q Consensus 42 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggGh~~~g~~~~~~~~g~ 121 (496)
...|++||-++.+.... . ...++.+|++++-+...+.|.+-.+.=|||... . .. -+
T Consensus 132 ~a~vvTPNl~EA~~L~g--------------~----~~i~~~~d~~~a~~~i~~~g~~~VliKGGH~~~-~--~~---D~ 187 (263)
T COG0351 132 LATVVTPNLPEAEALSG--------------L----PKIKTEEDMKEAAKLLHELGAKAVLIKGGHLEG-E--AV---DV 187 (263)
T ss_pred cCeEecCCHHHHHHHcC--------------C----CccCCHHHHHHHHHHHHHhCCCEEEEcCCCCCC-C--ce---eE
Confidence 45789998887776531 1 378899999999999999999988888899865 1 11 24
Q ss_pred EEEcCCCCCe---EEcCCCCEEEEeCCccHHHHHHHHHhcCCc
Q 040771 122 ILDMFNLRSI---DIDIANETAWVQAGATLGELYFKIANTSKV 161 (496)
Q Consensus 122 vIdl~~l~~i---~id~~~~~v~v~aG~~~~~l~~~l~~~g~~ 161 (496)
+.|-..+..+ .++.. =+=|.|+++......-..+|..
T Consensus 188 l~~~~~~~~f~~~ri~t~---~tHGTGCTlSaAIaa~LA~G~~ 227 (263)
T COG0351 188 LYDGGSFYTFEAPRIPTK---NTHGTGCTLSAAIAANLAKGLS 227 (263)
T ss_pred EEcCCceEEEeccccCCC---CCCCccHHHHHHHHHHHHcCCC
Confidence 4443311111 12211 2468899987665444445543
No 67
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=29.11 E-value=88 Score=27.85 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=26.0
Q ss_pred EEEEcCCHHHHHHHHHHHHHcCCcEEEEc
Q 040771 76 AILTAKHESHVQATVICAKQAGLELRIRS 104 (496)
Q Consensus 76 ~vv~P~s~~dv~~~v~~a~~~~~~~~~~g 104 (496)
.|+.|.+.+|+..+++.|-+..-|+.+|=
T Consensus 126 ~v~~Ps~~~~~~~ll~~a~~~~~P~~irl 154 (156)
T cd07033 126 TVLRPADANETAAALEAALEYDGPVYIRL 154 (156)
T ss_pred EEEecCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 68999999999999999998887888773
No 68
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.75 E-value=45 Score=27.39 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhhhhhccC
Q 040771 4 LISLLLVTMSSIFLSVSG 21 (496)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (496)
||.|+|.+.|.|++.+++
T Consensus 8 lL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 8 LLGLLLAALLLISSEVAA 25 (95)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 345555566667655543
No 69
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=25.31 E-value=1.1e+02 Score=27.95 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=26.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHH--cCCcEEEEcCC
Q 040771 75 LAILTAKHESHVQATVICAKQ--AGLELRIRSGG 106 (496)
Q Consensus 75 ~~vv~P~s~~dv~~~v~~a~~--~~~~~~~~ggG 106 (496)
..|+.|.+.+|+..+++++-+ .+-|+.+|-..
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 479999999999999999999 56788887543
No 70
>PF03392 OS-D: Insect pheromone-binding family, A10/OS-D; InterPro: IPR005055 A class of small (14-20 Kd) water-soluble proteins, called odorant binding proteins (OBPs), first discovered in the insect sensillar lymph but also in the mucus of vertebrates, is postulated to mediate the solubilisation of hydrophobic odorant molecules, and thereby to facilitate their transport to the receptor neurons. The product of a gene expressed in the olfactory system of Drosophila melanogaster (Fruit fly), OS-D, shares features common to vertebrate odorant-binding proteins, but has a primary structure unlike odorant-binding proteins []. OS-D derivatives have subsequently been found in chemosensory organs of phylogenetically distinct insects, including cockroaches, phasmids and moths, suggesting that OS-D-like proteins seem to be conserved in the insect phylum.; PDB: 1KX9_A 1N8U_A 1KX8_A 1K19_A 1N8V_A 2GVS_A 2JNT_A.
Probab=22.93 E-value=52 Score=27.00 Aligned_cols=14 Identities=21% Similarity=0.705 Sum_probs=10.5
Q ss_pred HHHHhccCCCCCCC
Q 040771 472 VEVKTRFDPDNFFK 485 (496)
Q Consensus 472 ~~vK~kYDP~nvF~ 485 (496)
.+|.+||||+|.+.
T Consensus 79 ~~l~~KyDp~~~y~ 92 (95)
T PF03392_consen 79 EELVKKYDPEGKYR 92 (95)
T ss_dssp HHHHHHHTTT-TTH
T ss_pred HHHHHHHCCCcchh
Confidence 56789999999764
No 71
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=22.69 E-value=1.9e+02 Score=24.51 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=31.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcE-EEEcCCCC
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLEL-RIRSGGHD 108 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~-~~~ggGh~ 108 (496)
..+..|+++.|++|+..+.+.|++.|++. .++=.|+.
T Consensus 46 G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~v~DAG~T 83 (113)
T PRK04322 46 GQKKVVLKVNSEEELLELKEKAERLGLPTALIRDAGLT 83 (113)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 67899999999999999999999999874 55555654
No 72
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=22.68 E-value=2.6e+02 Score=28.73 Aligned_cols=81 Identities=21% Similarity=0.296 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhhhccCCCcccHhhhcccCCCCCCCCCCeE--EcCCCCChHHHHHhhhcccccccCCCCCccEEEEcC
Q 040771 4 LISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVI--FTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAK 81 (496)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v--~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~ 81 (496)
++.|+|+..+.|..+ ..|+-+...-|-+=...+ +.+| +.+++..|.. | .|+ +..-|....
T Consensus 2 ~~~~~~~~~~~~~~~-~~c~~~~~~~~~p~~~~~----~~~~~~~~~~~~~~~~----~----~~~-----~~tti~~~~ 63 (358)
T cd02875 2 IILLILLILLAISKS-YECPCIEPELCEPIEIGP----RFEFLVFSVNSTNYPN----Y----DWS-----KVTTIAIFG 63 (358)
T ss_pred chHHHHHHHHHHHhc-CCCCCCCHhhCCCccCCC----ceEEEEEEeCCCcCcc----c----ccc-----cceEEEecC
Confidence 345566666666554 457777777776665543 2333 3455544432 2 354 233344334
Q ss_pred CHHHHHHHHHHHHHcCCcEEEEc
Q 040771 82 HESHVQATVICAKQAGLELRIRS 104 (496)
Q Consensus 82 s~~dv~~~v~~a~~~~~~~~~~g 104 (496)
+.+ .++++.|+++|+++.+.+
T Consensus 64 ~~~--~~~~~~A~~~~v~v~~~~ 84 (358)
T cd02875 64 DID--DELLCYAHSKGVRLVLKG 84 (358)
T ss_pred CCC--HHHHHHHHHcCCEEEEEC
Confidence 444 477889999999998764
No 73
>PF03941 INCENP_ARK-bind: Inner centromere protein, ARK binding region; InterPro: IPR005635 This region of the inner centromere protein has been found to be necessary and sufficient for binding to aurora-related kinase. This interaction has been implicated in the coordination of chromosome segregation with cell division in yeast [].; PDB: 2BFX_C 2BFY_C 3ZTX_D 2VGO_D 2VGP_D 2VRX_D 4AF3_D.
Probab=22.17 E-value=22 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.485 Sum_probs=20.4
Q ss_pred hhhcccccCCcHHHHHHHHhccCCCCCCCC
Q 040771 457 EVYGTKYFNGNFKKLVEVKTRFDPDNFFKN 486 (496)
Q Consensus 457 ~~~g~~yyg~n~~RL~~vK~kYDP~nvF~~ 486 (496)
+.|.+ +.++.+...-.+.+||+-+|..
T Consensus 19 P~WA~---~~~L~~~L~~Q~~~Dpd~IFG~ 45 (57)
T PF03941_consen 19 PSWAQ---SPNLRQALKKQQNIDPDEIFGP 45 (57)
T ss_dssp -GGGS---HHHHHHHHHHHHHS-HHHHCTT
T ss_pred CCCcC---cHHHHHHHHHHhccCHHHHcCC
Confidence 56775 4688888888889999999974
No 74
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=22.10 E-value=1.1e+02 Score=25.41 Aligned_cols=34 Identities=9% Similarity=0.273 Sum_probs=28.8
Q ss_pred Ccc-EEEEcCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 040771 73 KPL-AILTAKHESHVQATVICAKQAGLELRIRSGG 106 (496)
Q Consensus 73 ~p~-~vv~P~s~~dv~~~v~~a~~~~~~~~~~ggG 106 (496)
.|. .+|++.+-.|+..++..|.+.|+|+.+.+.-
T Consensus 55 vP~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~d~ 89 (100)
T PF15608_consen 55 VPWKVLVRDPDDPDLAHLLLLAEEKGVPVEVYPDL 89 (100)
T ss_pred CCCEEEECCCCCccHHHHHHHHHHcCCcEEEeCCC
Confidence 455 5677788899999999999999999998754
No 75
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=20.66 E-value=2e+02 Score=28.77 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=36.4
Q ss_pred EEcCCCCChHHHHHhhhcccccccCCCCCcc-EEEEcCCHHHHHHHHHHHHHcCCcEEEEcC
Q 040771 45 IFTQNHSNFQSVLNAYIKNRKFLIASTPKPL-AILTAKHESHVQATVICAKQAGLELRIRSG 105 (496)
Q Consensus 45 v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~-~vv~P~s~~dv~~~v~~a~~~~~~~~~~gg 105 (496)
|=+|.+-+|..... ..|. -++...++++|.+++..+.+.++|+.+.|-
T Consensus 242 iP~p~~vd~~~wlk-------------~ypg~gfv~~v~pe~veev~~v~~~~g~~a~~~Ge 290 (324)
T COG2144 242 IPYPADVDFRQWLK-------------RYPGSGFVLTVDPEDVEEVVDVFEEEGCPATVIGE 290 (324)
T ss_pred cCCcccccHHHHHH-------------hCCCCcEEEEeCHHHHHHHHHHHHHcCCceEEEEE
Confidence 45677777876544 2344 567777778999999999999999998773
No 76
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=20.66 E-value=73 Score=33.78 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=36.9
Q ss_pred CeEEcCCCCChHHHHHhhhccccccc-CCCCCccEEEEcCCHHHHHHHHHHHHHc---CCcEEEEcCC
Q 040771 43 DVIFTQNHSNFQSVLNAYIKNRKFLI-ASTPKPLAILTAKHESHVQATVICAKQA---GLELRIRSGG 106 (496)
Q Consensus 43 ~~v~~p~~~~y~~~~~~~~~n~r~~~-~~~~~p~~vv~P~s~~dv~~~v~~a~~~---~~~~~~~ggG 106 (496)
|.|.-|+...+.+.++.. +.||.. .....|..|==...+.+|.++++.+.+. .+=|.+||||
T Consensus 133 ~vits~~~aa~~D~~~~~--~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGG 198 (432)
T TIGR00237 133 GVITSQTGAALADILHIL--KRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGG 198 (432)
T ss_pred EEEeCCccHHHHHHHHHH--HhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCC
Confidence 456667777888876632 446632 1222233322234458999999988863 3456777777
No 77
>PF01981 PTH2: Peptidyl-tRNA hydrolase PTH2; InterPro: IPR002833 Peptidyl-tRNA hydrolases are enzymes that release tRNAs from peptidyl-tRNA during translation.; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 1RLK_A 1XTY_C 2ZV3_I 2D3K_A 1WN2_A 1Q7S_A 3ERJ_B 1RZW_A.
Probab=20.56 E-value=2e+02 Score=24.21 Aligned_cols=37 Identities=27% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcE-EEEcCCCC
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLEL-RIRSGGHD 108 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~-~~~ggGh~ 108 (496)
..+..|++..|++++.++.+.|++.|++. .++-.|+.
T Consensus 49 g~~Kivlkv~~e~~L~~l~~~a~~~gl~~~~i~Dag~T 86 (116)
T PF01981_consen 49 GQKKIVLKVPSEEELLELAKKAKEAGLPHYLIRDAGRT 86 (116)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTT-SEEEEEETSSS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence 57889999999999999999999999985 45566766
No 78
>cd02429 PTH2_like Peptidyl-tRNA hydrolase, type 2 (PTH2)_like . Peptidyl-tRNA hydrolase activity releases tRNA from the premature translation termination product peptidyl-tRNA. Two structurally different enzymes have been reported to encode such activity, Pth present in bacteria and eukaryotes and Pth2 present in archaea and eukaryotes. There is no functional information for this eukaryote-specific subgroup.
Probab=20.25 E-value=1.9e+02 Score=24.65 Aligned_cols=31 Identities=6% Similarity=0.108 Sum_probs=28.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHcCCcEEE
Q 040771 72 PKPLAILTAKHESHVQATVICAKQAGLELRI 102 (496)
Q Consensus 72 ~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~~ 102 (496)
..+..|++..+++|+.++-+.|++.|++..+
T Consensus 54 g~~KVVLkv~~e~eL~~L~~~a~~~gi~~~l 84 (116)
T cd02429 54 NMHKVVLEVPDEAALKNLSSKLTENSIKHKL 84 (116)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCCeEE
Confidence 5789999999999999999999999988665
Done!