Query 040772
Match_columns 142
No_of_seqs 125 out of 1021
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 11:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0687 PotD Spermidine/putres 99.8 9.4E-21 2E-25 159.8 9.0 84 30-140 80-163 (363)
2 PRK09501 potD spermidine/putre 99.6 6.8E-16 1.5E-20 128.3 9.1 83 29-140 75-157 (348)
3 PRK10682 putrescine transporte 99.6 7.6E-16 1.6E-20 128.9 8.8 89 28-140 76-166 (370)
4 TIGR03227 PhnS 2-aminoethylpho 99.1 1.3E-10 2.8E-15 98.1 7.3 76 27-140 88-163 (367)
5 PF13343 SBP_bac_6: Bacterial 99.1 3.9E-11 8.4E-16 94.2 3.2 79 29-140 2-81 (242)
6 TIGR01276 thiB thiamine ABC tr 99.0 4.7E-10 1E-14 91.4 7.0 76 26-140 53-129 (309)
7 PF13416 SBP_bac_8: Bacterial 99.0 3.8E-10 8.2E-15 88.5 5.7 83 26-140 35-118 (281)
8 PRK11622 hypothetical protein; 99.0 6E-10 1.3E-14 95.4 6.0 83 29-139 98-180 (401)
9 TIGR03850 bind_CPR_0540 carboh 98.9 1.9E-09 4E-14 90.8 7.1 91 29-140 86-187 (437)
10 PRK15046 2-aminoethylphosphona 98.9 2E-09 4.4E-14 89.8 7.0 76 27-140 83-158 (349)
11 TIGR03261 phnS2 putative 2-ami 98.9 2.9E-09 6.4E-14 88.0 7.2 82 27-140 70-152 (334)
12 TIGR01254 sfuA ABC transporter 98.9 3E-09 6.4E-14 86.7 7.1 74 28-140 55-129 (304)
13 PRK09474 malE maltose ABC tran 98.9 3.8E-09 8.2E-14 87.9 6.5 81 29-140 81-161 (396)
14 PRK11205 tbpA thiamine transpo 98.9 5.3E-09 1.1E-13 86.4 6.6 74 28-140 76-150 (330)
15 TIGR03851 chitin_NgcE carbohyd 98.8 1.9E-08 4.1E-13 85.8 6.9 87 29-140 92-189 (450)
16 PRK10974 glycerol-3-phosphate 98.7 4.5E-08 9.8E-13 83.4 7.0 91 29-140 81-176 (438)
17 PF01547 SBP_bac_1: Bacterial 98.6 8.9E-08 1.9E-12 74.5 6.3 93 29-141 50-142 (315)
18 COG1653 UgpB ABC-type sugar tr 98.5 2.1E-07 4.6E-12 75.8 6.0 84 30-139 87-174 (433)
19 COG2182 MalE Maltose-binding p 98.3 3.3E-07 7.1E-12 81.5 3.3 84 26-140 90-173 (420)
20 PF02030 Lipoprotein_8: Hypoth 98.2 2.3E-06 4.9E-11 77.7 6.2 100 29-140 69-176 (493)
21 COG4143 TbpA ABC-type thiamine 97.4 0.00033 7.2E-09 61.2 5.6 78 25-140 76-154 (336)
22 COG1840 AfuA ABC-type Fe3+ tra 97.0 0.0017 3.7E-08 53.7 6.0 80 28-141 34-114 (299)
23 COG4134 ABC-type uncharacteriz 95.1 0.044 9.5E-07 48.8 5.5 84 27-139 90-173 (384)
24 TIGR00971 3a0106s03 sulfate/th 95.1 0.048 1E-06 46.1 5.4 29 106-140 98-126 (315)
25 PRK10852 thiosulfate transport 93.8 0.097 2.1E-06 45.2 4.6 29 106-140 115-143 (338)
26 PRK10752 sulfate transporter s 90.3 0.8 1.7E-05 39.4 6.0 62 29-140 75-137 (329)
27 PF13531 SBP_bac_11: Bacterial 90.2 1.1 2.5E-05 34.6 6.3 30 106-140 73-102 (230)
28 PRK10677 modA molybdate transp 82.7 5.1 0.00011 32.8 6.6 32 108-139 103-135 (257)
29 COG1613 Sbp ABC-type sulfate t 61.8 11 0.00024 33.5 3.8 29 106-140 126-154 (348)
30 KOG2951 Inositol monophosphata 27.0 61 0.0013 28.2 2.8 73 30-124 41-121 (279)
No 1
>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism]
Probab=99.83 E-value=9.4e-21 Score=159.79 Aligned_cols=84 Identities=25% Similarity=0.412 Sum_probs=74.4
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
+||||++++.++.+++++||++|||.++|+|| ++|++.++ .. . ..|+ |+.|+|||
T Consensus 80 ~~Dvv~~s~~~~~~~~~~gll~~lD~skl~n~-~~l~~~~~-----------------~~-----~-~~d~-g~~y~vPy 134 (363)
T COG0687 80 GYDVVVPSGYFVARLIKEGLLQPLDKSKLPNW-KNLDPEFL-----------------NP-----P-KFDP-GNKYSVPY 134 (363)
T ss_pred CceEEEeCHHHHHHHHHcCCcccCChhhCcCc-cccCHHHh-----------------cc-----c-cCCC-CCEeeeeE
Confidence 49999999999999999999999999999999 99999988 21 1 2454 89999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+||++||+||+++++. -.+|+||+++|++
T Consensus 135 ~~g~t~i~Yn~~~~~~--~~~~~sW~~l~d~ 163 (363)
T COG0687 135 FWGTTGIAYNTDKVKD--APPPTSWADLFDP 163 (363)
T ss_pred EeeeeEEEEeccccCC--CCCCccHHHHhCc
Confidence 9999999999999981 1368999999986
No 2
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed
Probab=99.64 E-value=6.8e-16 Score=128.28 Aligned_cols=83 Identities=18% Similarity=0.252 Sum_probs=72.1
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+|||.+++.++.+++++|+|+|+|.++++|+ +++.+.++ . ...|+ |+.|+||
T Consensus 75 ~~~Dvv~~~~~~~~~~~~~gll~~ld~~~~~~~-~~i~~~~~-----------------~-------~~~~~-~~~y~vP 128 (348)
T PRK09501 75 GAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNF-SNLDPDML-----------------N-------KPFDP-NNDYSIP 128 (348)
T ss_pred CCceEEEeCHHHHHHHHHCCCcccCChhhCcCh-hhCCHHHh-----------------c-------CCCCC-CCceEee
Confidence 469999999999999999999999999999999 99998876 1 12355 6779999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|.||++||+||++++++ .+|+||++||++
T Consensus 129 ~~~~~~~i~YN~d~v~~---~~~~sw~dL~~p 157 (348)
T PRK09501 129 YIWGATAIGVNSDAIDP---KSVTSWADLWKP 157 (348)
T ss_pred eeccceEEEEcHHHcCC---CCCCCHHHHhCH
Confidence 99999999999999974 367999999986
No 3
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional
Probab=99.64 E-value=7.6e-16 Score=128.94 Aligned_cols=89 Identities=21% Similarity=0.317 Sum_probs=75.7
Q ss_pred CCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 28 YMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 28 ~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
..+||||.+++.++.+++++|+|+|||.++++|+ +++++.++ ...+ ..|+ |+.|||
T Consensus 76 ~~~~Dvv~~~~~~~~~~~~~gll~~ld~~~~~~~-~~~~~~~~-----------------~~~~-----~~~~-g~~y~v 131 (370)
T PRK10682 76 STGFDLVVPSASFLERQLTAGVFQPLDKSKLPNW-KNLDPELL-----------------KLVA-----KHDP-DNKYAM 131 (370)
T ss_pred CCCCcEEEECHHHHHHHHHCCCcccCChhhCcCh-hhCCHHHH-----------------hccc-----cCCC-CCeEee
Confidence 4579999999999999999999999999999999 99998876 2211 1354 778999
Q ss_pred eeeeeeeEEEEechhhhh-cCCC-CCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRK-HNLA-LIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~-~g~~-pp~SW~dL~~~ 140 (142)
||.||++||+||++++++ .|+. ||+||++||+|
T Consensus 132 P~~~~~~~l~YN~~~~~~~~G~~~pp~sW~dl~~p 166 (370)
T PRK10682 132 PYMWATTGIGYNVDKVKAVLGEDAPVDSWDLVLKP 166 (370)
T ss_pred eeEecceEEEEehHHhcccccCCCCCCCHHHHhCc
Confidence 999999999999999987 3765 67999999975
No 4
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein. This ABC transporter periplasmic substrate binding protein component is found in a region of the salmonella typhimurium LT2 genome responsible for the catabolism of 2-aminoethylphosphonate via the phnWX pathway (GenProp0238). The protein contains a match to pfam01547 for the "Bacterial extracellular solute-binding protein" domain.
Probab=99.13 E-value=1.3e-10 Score=98.06 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 27 TYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 27 ~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
....+|||..++.++.+++++|+|+|+|.++++++ ++.++ |+ ++.|
T Consensus 88 ~~~~~DVv~~~~~~~~~~~~~Gll~~~~~~~~~~~----~~~~~----------------------------~~-~g~~- 133 (367)
T TIGR03227 88 GNPKADVIVTAPPFIQQAAAEGLLANFNSDAAKAI----PAIAK----------------------------AA-DGLW- 133 (367)
T ss_pred cCCCCCEEEeCcHHHHHHHHCCCccCCCCcccccC----chhhc----------------------------CC-CCeE-
Confidence 45689999999999999999999999997765544 32222 23 3345
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.||.++++||+||++++++ +|+||+|||++
T Consensus 134 ~p~~~~~~~i~YN~d~~~~----~P~sw~DL~~p 163 (367)
T TIGR03227 134 APFVKNYFSFAINPKLLKS----APASFADLLDA 163 (367)
T ss_pred EEEeeceeEEEEchhhcCC----CCCCHHHHhCh
Confidence 5999999999999999964 68999999986
No 5
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A ....
Probab=99.11 E-value=3.9e-11 Score=94.22 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=57.3
Q ss_pred CcceEEE-eChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVS-VGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~-~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
+.+|||+ .+...+.+++++|+++|++.+.+++. .+....++ |++| |.+
T Consensus 2 p~aDv~~~~~~~~~~~~~~~gll~p~~~~~~~~~-~~~~~~~~----------------------------d~~g--~~~ 50 (242)
T PF13343_consen 2 PQADVIVSLDPDFMERAKEAGLLQPYDPSNIDNV-PNEFESFK----------------------------DPDG--YWV 50 (242)
T ss_dssp -S-SEEEEESHHHHHHHHHTTGBE---HHHHHHH-SHCSGGGB----------------------------HTTS--SSE
T ss_pred CceeEEEECCHHHHHHHHHCcCeeeCCccchhhC-cchHHhcc----------------------------CCCC--eEE
Confidence 5799999 89999999999999999996554444 32213333 3434 456
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
||.++.++|+||++++.+.++ |+||+||++|
T Consensus 51 ~~~~~~~~i~yN~~~~~~~~~--P~sw~dL~~p 81 (242)
T PF13343_consen 51 PYGYGPVVIAYNTDKLKERDL--PTSWADLLDP 81 (242)
T ss_dssp EEEEEEEEEEEETTTSSSGGT--TSSGGGGGSG
T ss_pred EEEEEEEEEEEEhhhcCCCCC--CccHHHHHHH
Confidence 999999999999999987433 6999999987
No 6
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein. This model finds the thiamine (and thiamine pyrophosphate) ABC transporter periplasmic binding protein ThiB in proteobacteria. Completed genomes having this protein (E. coli, Vibrio cholera, Haemophilus influenzae) also have the permease ThiP, described by TIGRFAMs equivalog model TIGR01253.
Probab=99.04 E-value=4.7e-10 Score=91.40 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=58.1
Q ss_pred CCCCcceEEEeC-hHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCe
Q 040772 26 ATYMAADLVSVG-DSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEI 104 (142)
Q Consensus 26 ~~~~~~DvV~~s-d~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ 104 (142)
+.++.+|||+.+ ...+.++.++|+++|++.+ +++ .+++..+ ++.
T Consensus 53 ~~~~~~DVv~~~~~~~~~~~~~~gll~p~~~~--~~~-~~~~~~~--------------------------------~~~ 97 (309)
T TIGR01276 53 GKNSKADVVLGLDNNLLDAASKTGLFAKSGVA--ADA-VNVPGGW--------------------------------NND 97 (309)
T ss_pred CCCCCCCEEEecCcHHHHHHHHCCCcccCCCC--hhh-ccCCccc--------------------------------cCC
Confidence 334679999985 4668899999999999653 233 3333221 234
Q ss_pred eeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|++||.||++||+||++.+++ +|+||+||+++
T Consensus 98 ~~~p~~~~~~~i~yn~~~~~~----~P~sw~DL~~~ 129 (309)
T TIGR01276 98 TFVPFDYGYFAFVYDKNKLKN----PPQSLKELVES 129 (309)
T ss_pred eEEEEeeEEEEEEECccccCC----CCCCHHHHhcc
Confidence 899999999999999999863 68999999985
No 7
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A ....
Probab=99.03 E-value=3.8e-10 Score=88.46 Aligned_cols=83 Identities=16% Similarity=0.292 Sum_probs=66.4
Q ss_pred CCCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCee
Q 040772 26 ATYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIW 105 (142)
Q Consensus 26 ~~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~y 105 (142)
.+.+.+||+.+...++..++++|+|+||+ .++++ +.+++.++ . ...+|+.|
T Consensus 35 g~~Pd~dv~~~~~~~~~~~~~~g~l~~L~--~~~~~-~~~~~~~~-----------------~---------~~~~G~~y 85 (281)
T PF13416_consen 35 GNAPDIDVVWPDSSWIPQLAEQGLLEDLD--DLENY-DDIPDALE-----------------A---------FTYDGKLY 85 (281)
T ss_dssp TSSSSESEEEEEHHHHHHHHHTTHBEHHT--GHGGG-GGBHHHHH-----------------H---------TEETTEES
T ss_pred CCccceEEEEECHHHHHHHHHCCCccccc--hhhhh-ccchHHHH-----------------h---------cCCCCeEE
Confidence 33355789999999999999999999998 45677 77654333 1 12358999
Q ss_pred eeeeeeee-eEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGT-MVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt-~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+|+.+++ .++.||++.+++ ++|+||+++++.
T Consensus 86 ~~P~~~~~~~~~~yn~d~~~~---~~p~t~~el~~~ 118 (281)
T PF13416_consen 86 GVPFDYGTPYGLYYNKDLLKK---APPKTWDELLEV 118 (281)
T ss_dssp EEEEEEEEEEEEEEETTTHSH---SGTSSHHHHHHH
T ss_pred EEEEeeccceEEEEchhhccc---CCcccHHHHhhh
Confidence 99999998 899999999997 378999999873
No 8
>PRK11622 hypothetical protein; Provisional
Probab=99.00 E-value=6e-10 Score=95.42 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=63.5
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+|||..+...+.++.++|+|++...++++|+ +.+++... .. ..+..+++.|++|
T Consensus 98 ~~~Dvv~~~~~~~~~~~~~gll~~~~~~~lp~~-~~~~~~~~-------------------~~----~~~~~~~~~y~~P 153 (401)
T PRK11622 98 GSVDLVWINGENFRTLKEAGLLYGPFAETLPNW-RYVDTSLP-------------------VR----EDFGVPTEGLEAP 153 (401)
T ss_pred CCCeEEEECchhHHHHHHCCCccCchhhhCcCc-hhcccchh-------------------hh----hhccccCCceEee
Confidence 579999998888889999999986555889998 76653111 00 0111124569999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYR 139 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~ 139 (142)
|.+++++|+||+++|++ +|+||++|++
T Consensus 154 ~~~~~~~l~YN~d~~~~----~P~Sw~dL~~ 180 (401)
T PRK11622 154 WGGAQLVFIYDSARTPQ----PPQSPAELLE 180 (401)
T ss_pred ccCCeEEEEEchHhcCC----CCCCHHHHHH
Confidence 99999999999999974 7899999987
No 9
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family. Members of this protein are the substrate-binding protein of a predicted carbohydrate transporter operon, together with permease subunits of ABC transporter homology families. This substrate-binding protein frequently co-occurs in genomes with a family of disaccharide phosphorylases, TIGR02336, suggesting that the molecule transported will include beta-D-galactopyranosyl-(1-3)-N-acetyl-D-glucosamine and related carbohydrates. Members of this family are sporadically strain by strain, often in species with a human host association, including Propionibacterium acnes and Clostridium perfringens, and Bacillus cereus.
Probab=98.95 E-value=1.9e-09 Score=90.82 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=64.5
Q ss_pred CcceEEEeCh----HHHHHHHHccccccCCCCc-------ccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCC
Q 040772 29 MAADLVSVGD----SWLSFAIKERLIEPTAGAE-------DQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGE 97 (142)
Q Consensus 29 ~~~DvV~~sd----~~l~~~i~~gLlepLD~s~-------l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (142)
.++||+.+.. .++..+++.|+|+||+.-- ...+.+...+.+. +..... .
T Consensus 86 ~~PDi~~~~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~--~- 145 (437)
T TIGR03850 86 DYPDVVYLATGRESGLTETLIKDKALADLTDVLDMKVPGEDVTVKDKILPGFV-----------------GSSATN--P- 145 (437)
T ss_pred CCCCEEEeCCCCCcccHHHHHhcCCcccChHHHcCcCCCcchhHHhhhChHhh-----------------hccccc--c-
Confidence 4689999875 4678899999999998310 0112122222222 111100 0
Q ss_pred cCCCCCeeeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 98 IDPRCEIWAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 98 ~Dp~g~~yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
-.+|+.||+|+..++.++.||||.|+++|+++|++|+++.+.
T Consensus 146 -~~~g~~ygvP~~~~~~~l~yNkdl~~~aG~~~P~Twde~~~~ 187 (437)
T TIGR03850 146 -YGDGKTYLAPMFYSPTGLFYNKTLFEEKGWEVPTTWDEMFAL 187 (437)
T ss_pred -cCCCeEEEEEeecceEEEEEcHHHHHHcCCCCCCCHHHHHHH
Confidence 124899999999999999999999999999999999999864
No 10
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional
Probab=98.94 E-value=2e-09 Score=89.81 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=60.5
Q ss_pred CCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 27 TYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 27 ~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
....+|||+.++.++.+++++|+|+|++.. +. .++++.++ |++|. |
T Consensus 83 ~~~~~DVv~~~~~~~~~~~~~Gll~~~~~~---~~-~~i~~~~~----------------------------d~~g~-~- 128 (349)
T PRK15046 83 SNPQADVLVTLPPFIQQAAAEGLLQPYSSV---NA-KAVPAIAK----------------------------DADGT-Y- 128 (349)
T ss_pred cCCCCCEEEeCcHHHHHHHhCCCccccCcc---ch-hcCchhhc----------------------------CCCCC-E-
Confidence 346799999999999999999999999853 34 55554333 44453 4
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+||.++++||+||++++++ +|+||++|+++
T Consensus 129 ~~~~~~~~~l~Yn~~~~~~----~P~sw~dL~~~ 158 (349)
T PRK15046 129 APFVNNYLSFIYNPKVLKT----APATWADLLDP 158 (349)
T ss_pred EeeecceeEEEEchhhccC----CCCCHHHHhCH
Confidence 7999999999999999974 68999999975
No 11
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.92 E-value=2.9e-09 Score=87.99 Aligned_cols=82 Identities=17% Similarity=0.076 Sum_probs=64.2
Q ss_pred CCCcceEEEeC-hHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCee
Q 040772 27 TYMAADLVSVG-DSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIW 105 (142)
Q Consensus 27 ~~~~~DvV~~s-d~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~y 105 (142)
.++.+|||... ...+..+.++|+++|++.+ ++ +++.+.++ |++++.+
T Consensus 70 ~~~~~Dvv~~~~~~~~~~~~~~gll~~~~~~---~~-~~~~~~~~----------------------------~~~~~~~ 117 (334)
T TIGR03261 70 NNPQADVVWGLAASSLALLDKEGMLKPYKPK---GL-DALNPKFR----------------------------DAKNPPH 117 (334)
T ss_pred hCCCCCEEEecCchHHHhhhhccccccCCCc---Ch-hhcCHhhh----------------------------CCCCCCc
Confidence 34679999764 4677889999999999865 45 56666655 3334446
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.+++..+.+||+||++++++.|+.+|+||+||+++
T Consensus 118 ~~~~~~~~~~~~yN~~~~~~~g~~~P~sw~dL~~p 152 (334)
T TIGR03261 118 WVGMDAWMAAICFNTVEAKKKGLPKPTSWEDLTKP 152 (334)
T ss_pred eEeeeeeEEEEEEehHHHHhcCCCCCCChHHhcCH
Confidence 67777888999999999988787788999999986
No 12
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily. The model describes thiamine ABC transporter, periplasmic protein in bacteria and archae. The protein belongs to the larger ABC transport system. It consists of at least three components: the thiamine binding periplasmic protein; an inner membrane permease; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP).
Probab=98.92 E-value=3e-09 Score=86.73 Aligned_cols=74 Identities=18% Similarity=0.135 Sum_probs=56.4
Q ss_pred CCcceEEEe-ChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 28 YMAADLVSV-GDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 28 ~~~~DvV~~-sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
++.+||++. +..++.++.++|+|+|++. +. ..+...++ . +..|+
T Consensus 55 ~~~~Dv~~~~~~~~~~~~~~~gll~~~~~----~~-~~~~~~~~----------------------------~--~~~~~ 99 (304)
T TIGR01254 55 NPKADVVLGLDNNLLEAASKTGLLAPSGV----AL-DKVNVPGG----------------------------W--NNATF 99 (304)
T ss_pred CCCCCEEEEeCHHHHHHHHHcCCcccCCc----cc-cccccccc----------------------------c--CCCeE
Confidence 456999986 6678999999999999973 23 22221111 1 23378
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+||.+|.+||+||++.+++ +|+||++|+++
T Consensus 100 ~p~~~~~~~i~yn~~~~~~----~P~sw~dL~~~ 129 (304)
T TIGR01254 100 LPFDYGYVAFVYDKNKLQN----PPQSLKELVEP 129 (304)
T ss_pred EEEeeeeEEEEEchHHhcC----CCCCHHHHhCH
Confidence 9999999999999999974 58999999986
No 13
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed
Probab=98.88 E-value=3.8e-09 Score=87.88 Aligned_cols=81 Identities=7% Similarity=-0.062 Sum_probs=61.5
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+..+..++..++++|+|+||+... .+.+++.+... .. . ..+|+.||||
T Consensus 81 ~~PDv~~~~~~~~~~~~~~G~l~~l~~~~--~~~~~~~~~~~-----------------~~------~--~~dg~~YgvP 133 (396)
T PRK09474 81 DGPDIIFWAHDRFGGYAQSGLLAEVTPSK--AFKDKLVPFTW-----------------DA------V--RYNGKLIGYP 133 (396)
T ss_pred CCCcEEEeCchhHHHHHHCCccccCCccH--HHHhhcCHHHH-----------------HH------e--eECCEEEEEe
Confidence 35899999989999999999999998532 22122222211 11 1 2348999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|...+.++.||+|.|++ +|++|+++.+.
T Consensus 134 ~~~~~~~l~ynkdl~~~----~P~Twdel~~~ 161 (396)
T PRK09474 134 IAVEALSLIYNKDLVPT----PPKTWEEIPAL 161 (396)
T ss_pred eeccceeEEEehhhccC----CCcCHHHHHHH
Confidence 99999999999999984 78999999864
No 14
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional
Probab=98.86 E-value=5.3e-09 Score=86.36 Aligned_cols=74 Identities=20% Similarity=0.243 Sum_probs=56.1
Q ss_pred CCcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 28 YMAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 28 ~~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
...+||++.++ ..+.++.++|+++|++.+. +. .++++.|+ ..|+
T Consensus 76 ~~~~DV~~~~~~~~~~~l~~~gll~~~~~~~--~~-~~~~~~~~--------------------------------~~~~ 120 (330)
T PRK11205 76 NSKADVVLGLDNNLLAAAKQTGLFAPSGVDT--SA-VTVPGGWN--------------------------------DDTF 120 (330)
T ss_pred CCCCCEEEECCchHHHHHHHCCCcccccCCh--hh-ccCccccc--------------------------------CCce
Confidence 46799998765 7788999999999986442 11 22332222 1268
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+||.+|.+||+||++++++ +|+||+||+++
T Consensus 121 ~~~~~~~~~l~yn~~~~~~----~P~sw~DL~~~ 150 (330)
T PRK11205 121 VPYDYGYFAFVYDKEKLKN----PPKSLKELVES 150 (330)
T ss_pred eeEeeeeEEEEEcccccCC----CCCCHHHHhCh
Confidence 9999999999999999964 68999999975
No 15
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein. Members of this protein family are the substrate-binding protein, a lipid-anchored protein of Gram-positive bacteria in all examples found so far, that include NgcE of the chitin-degrader, Streptomyces olivaceoviridis, and close homologs from other species likely to share the same function. NgcE binds both N-acetylglucosamine and the chitin dimer, N,N'-diacetylchitobiose.
Probab=98.76 E-value=1.9e-08 Score=85.79 Aligned_cols=87 Identities=14% Similarity=0.140 Sum_probs=62.8
Q ss_pred CcceEEEeCh---HHHHHHHHccccccCCCC-cccch-------hhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCC
Q 040772 29 MAADLVSVGD---SWLSFAIKERLIEPTAGA-EDQDW-------FKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGE 97 (142)
Q Consensus 29 ~~~DvV~~sd---~~l~~~i~~gLlepLD~s-~l~n~-------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (142)
..+||+.... .++..+++.|+|+||+.- +-+++ ...+.+... . ...
T Consensus 92 ~~PDi~~~~~~~~~~~~~~~~~g~l~~L~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~------~~~ 148 (450)
T TIGR03851 92 NPPDLIDNSGADAMDMSALVAEGQLEDLTPLFDAPSWDDPGKKVRDTLLPGVL-----------------E------PGT 148 (450)
T ss_pred CCCcEEeecCcccccHHHHHhCCCcccchHHhccccccccchhHhhhhchhhh-----------------h------hce
Confidence 3689998642 357889999999999841 01222 011222211 1 122
Q ss_pred cCCCCCeeeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 98 IDPRCEIWAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 98 ~Dp~g~~yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+ +|+.||||+..++.++.|||+.|+++|+++|++|+++.+.
T Consensus 149 ~--dG~~ygvP~~~~~~~l~YNkdl~~~aGl~~P~Twde~~~~ 189 (450)
T TIGR03851 149 F--DGKPYALNYVYTVYGLWYSATLFEENGWTPPKTWDEFLAL 189 (450)
T ss_pred E--CCEEEEEeecceeeEEEEcHHHHHHcCCCCCCCHHHHHHH
Confidence 3 4899999999999999999999999999999999999864
No 16
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional
Probab=98.68 E-value=4.5e-08 Score=83.37 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=62.0
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCC-cccchhhhcC-hhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGA-EDQDWFKCLS-HKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s-~l~n~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
.++||+.+...+...+++.|+|+||+.- +...+ . ++ ..|. +.... ....+.+|+.||
T Consensus 81 ~~PDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~~-~-~~~~~~~-----------------~~~~~--~~~~~~~G~~Yg 139 (438)
T PRK10974 81 NAPAILQVYEVGTATMMASKAIKPVYDVFKDAGI-P-FDESQFV-----------------PTVAG--YYSDAKTGHLLS 139 (438)
T ss_pred CCCeEEEEecCCHHHHhhCCCcccHHHHHhhcCC-C-CChHHhc-----------------hHHHh--hcccCCCCcEEE
Confidence 4689998876667788899999999621 00111 0 11 1111 10100 001123599999
Q ss_pred eeeeeeeeEEEEechhhhhcCCC---CCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLA---LIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~---pp~SW~dL~~~ 140 (142)
+|+...++++.||||.|+++|++ +|++|+++.+.
T Consensus 140 lP~~~~~~~l~YNkdlf~~aGi~~~~~P~Twde~~~~ 176 (438)
T PRK10974 140 QPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLAAY 176 (438)
T ss_pred eeccCCCceEEEcHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 99999999999999999999985 58999999864
No 17
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins and a high affinity periplasmic solute-binding protein. In Gram-positive bacteria, which are surrounded by a single membrane and therefore have no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute through the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped into eight family clusters [], which generally correlate with the nature of the solute bound. Family 1 includes the maltose/maltodextrin-binding proteins of Enterobacteriaceae (gene malE) [] and Streptococcus pneumoniae malX; multiple oligosaccharide binding protein of Streptococcus mutans (gene msmE); Escherichia coli glycerol-3-phosphate-binding protein; Serratia marcescens iron-binding protein (gene sfuA) and the homologous proteins (gene fbp) from Haemophilus influenzae and Neisseria; and the E. coli thiamine-binding protein (gene tbpA).; GO: 0005215 transporter activity, 0006810 transport; PDB: 3CFZ_A 2THI_A 3THI_A 4THI_A 1O7T_C 1D9Y_A 1URG_A 1URS_A 1URD_B 3OMB_A ....
Probab=98.61 E-value=8.9e-08 Score=74.54 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=60.8
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+..+..++.+++++|+++||+.--.... ......+.. . ....+...... . .+ .| +|
T Consensus 50 ~p~Dv~~~~~~~~~~~~~~g~l~~L~~~~~~~~-~~~~~~~~~------~---~~~~~~~~~~~-----~--~~-~y-vP 110 (315)
T PF01547_consen 50 APYDVIFIDNDWLPQLAEAGLLMDLDDYLEKYA-PDWKKDFAD------N---LISSFDPKIFD-----S--KG-IY-VP 110 (315)
T ss_dssp SSESEEEEEGHHHHHHHHTTSBEHCHHHHHHHT-HHCCSHCHH------C---CHHHBCHHHHH-----H--EE-ES-EE
T ss_pred ChhheEEeccccchhhhhhhccCcCCHHHhhcc-ccccccccc------c---chhhhhhheEe-----c--ce-EE-EE
Confidence 566999999999999999999999985211111 111000000 0 00000000000 0 13 89 99
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRIL 141 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~~ 141 (142)
+. ++.++.||+|.++++|+.+|.||+++.+.+
T Consensus 111 ~~-~~~~~~ynkdl~~~~Gl~~p~Twde~~~~~ 142 (315)
T PF01547_consen 111 YS-GPNGLYYNKDLFEKAGLDPPWTWDEFLEAA 142 (315)
T ss_dssp EE-EEEEEEEETTTHHHTTSSSTSBHHHHHHHH
T ss_pred ee-eeeEEEEchhHHHHcCCCCCCCHHHHHHHH
Confidence 99 699999999999999999999999998753
No 18
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=75.79 Aligned_cols=84 Identities=18% Similarity=0.190 Sum_probs=62.8
Q ss_pred cceEEEeChHHHHHHHHccc-cccCCCCc--ccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 30 AADLVSVGDSWLSFAIKERL-IEPTAGAE--DQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gL-lepLD~s~--l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
.+|||...+.+...+...|. +.+|+... ..+. ....+... .. ...+|+.||
T Consensus 87 ~PDv~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~-----------------~~--------~~~dG~~y~ 140 (433)
T COG1653 87 APDVVQLDPEWLAAFAKAGGLLEDLTDLINPKLDL-SDFPPALL-----------------DT--------TTYDGKLYG 140 (433)
T ss_pred CCCeEEeccchHHHHHhcccccchhhhhhhcccCh-hhcCHHhH-----------------hh--------eeeCCEEee
Confidence 34999999888888888877 87777543 1122 33333333 11 123489999
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCC-CcHHHHhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALI-EFDGKRYR 139 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp-~SW~dL~~ 139 (142)
+|+.+.+.++.||+|.|+++|+.+| ++|+++.+
T Consensus 141 ~P~~~~~~~~~ynkdlf~~aG~~~pp~tw~e~~~ 174 (433)
T COG1653 141 VPFNSSTPALFYNKDLFKKAGLKPPPKTWDELLA 174 (433)
T ss_pred ccccccCceEEEeHHHHHHhCCCCCCCCHHHHHH
Confidence 9999999999999999999999985 99999654
No 19
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism]
Probab=98.33 E-value=3.3e-07 Score=81.49 Aligned_cols=84 Identities=7% Similarity=-0.004 Sum_probs=64.3
Q ss_pred CCCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCee
Q 040772 26 ATYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIW 105 (142)
Q Consensus 26 ~~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~y 105 (142)
..-.++||++....++..+.++|+|.||+...-..+ .-.+..|. . . .+ +|++|
T Consensus 90 paGqgpDi~~~~hD~iG~~a~~G~l~~i~~~~~~~~-~~~~~~~~-----------------a-~------~y--~GkiY 142 (420)
T COG2182 90 PAGQGPDIFVWAHDRIGGLAEAGLLLEIDPYATKYT-DFYPAALV-----------------A-A------TY--KGKLY 142 (420)
T ss_pred CCCCCCCEEEecchhHHHHHhCCcccccCcchhhhh-ccchhhhh-----------------h-h------hc--CCEEE
Confidence 344689999999999999999999999986532222 11222222 1 1 13 39999
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+|..-=|+.+.||||.+++ +|.+|++|.+.
T Consensus 143 GlP~~~Et~~L~YNKdlv~~----~P~T~~el~~~ 173 (420)
T COG2182 143 GLPQAVETLALYYNKDLVPE----PPKTWEELEAL 173 (420)
T ss_pred eccHhhhhhhhheeccccCC----CcccHHHHHHH
Confidence 99999999999999999996 68999999754
No 20
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family)
Probab=98.22 E-value=2.3e-06 Score=77.70 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=65.1
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhc-------C-hhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCC
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCL-------S-HKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDP 100 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp 100 (142)
..|||++||++++++|+++|+|+|||.+++.-| +.- + ..++. +|.+. .+.+-..+.... . +
T Consensus 69 ~~YDvaVpS~y~vakl~~~~~l~kIDwsKfnl~-~~~~~~~~i~~~~~~~~--lFt~~-v~~i~~~~~d~k---~---~- 137 (493)
T PF02030_consen 69 GTYDVAVPSDYMVAKLASENLLQKIDWSKFNLK-KENNSTNTINNANDAKK--LFTDE-VFEILASYTDLK---N---N- 137 (493)
T ss_pred CceeEEeccHHHHHHHHHcCCcccccHHHhccc-cccCccccccCchhHHH--hhhHH-HHHHHHHhhhcc---c---c-
Confidence 469999999999999999999999999887633 111 0 11121 22221 122222221110 0 1
Q ss_pred CCCeeeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 101 RCEIWAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 101 ~g~~yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.=-.|||||.||-.+|+||..+++.+. ..--+|.+++.-
T Consensus 138 ~LldY~IPYF~QDLvfaY~~eki~~L~-~~~v~w~~l~k~ 176 (493)
T PF02030_consen 138 SLLDYGIPYFWQDLVFAYNGEKIKNLK-NEDVSWSDLIKE 176 (493)
T ss_pred hhhhhcccceeeeeEEEEcccccchhh-hcCCcHHHHHHH
Confidence 112599999999999999999998643 345789988763
No 21
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism]
Probab=97.37 E-value=0.00033 Score=61.24 Aligned_cols=78 Identities=23% Similarity=0.335 Sum_probs=59.0
Q ss_pred CCCCCcceEEEe-ChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCC
Q 040772 25 SATYMAADLVSV-GDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCE 103 (142)
Q Consensus 25 ~~~~~~~DvV~~-sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~ 103 (142)
.+.++.+|||+- .+..+.++.+.||+.|....... .++.+.|+ +|+
T Consensus 76 eg~~~~ADvvvGldn~~l~~A~~~glf~~~~~d~~~---~~vp~~~~---------------------------~d~--- 122 (336)
T COG4143 76 EGKNPKADVVVGLDNNLLARARETGLFAPYGVDASD---VPVPEGWK---------------------------IDT--- 122 (336)
T ss_pred cCCCCCCcEEEecChHHHHHHHhcCCcccCCCCccc---CCCCcccc---------------------------cCc---
Confidence 445578999886 56799999999999998743211 23444555 232
Q ss_pred eeeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 104 IWAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 104 ~yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+||-+|-..|.||++++++ ||+|-++|-++
T Consensus 123 -f~~P~DyGy~a~vYd~~~~~~----ppksL~dL~~~ 154 (336)
T COG4143 123 -FALPYDYGYFAFVYDKTKLKN----PPKSLKDLVEP 154 (336)
T ss_pred -cccccccceEEEEEchHHhcC----CcccHHHhcCc
Confidence 389999999999999999986 78999998653
No 22
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.0017 Score=53.66 Aligned_cols=80 Identities=16% Similarity=0.066 Sum_probs=55.5
Q ss_pred CCcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 28 YMAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 28 ~~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
..+.||+..++ ..+..+.++|+++|..... + ..+.+... |+.+ .|+
T Consensus 34 ~~~aDv~~~~~~~~~~~l~~~gll~~y~~~~---~-~~i~~~~~----------------------------~~~~-~~~ 80 (299)
T COG1840 34 PQAADVLWGGAPVSLDQLKEAGLLQPYKSPE---L-DEIPAWAP----------------------------DPDG-AYG 80 (299)
T ss_pred CCCCcEEEecCcchHHHHHhcCCccccCCcc---H-hhhhhhcc----------------------------chhc-CCC
Confidence 46779999987 6777788889999976542 3 33333222 2211 122
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRIL 141 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~~ 141 (142)
.. ..|.++++||++.+++.....|++|.||-+|-
T Consensus 81 ~~-~~~~~~~~~n~~~~~~~~~~~P~~w~DL~~p~ 114 (299)
T COG1840 81 GG-YVGPLVFAVNTDYNKDLLKPVPKSWADLAKPE 114 (299)
T ss_pred cc-eEeeEEEEEehhhccccCCCCCCCHHHhcCHh
Confidence 22 67999999999999986545589999998873
No 23
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=95.14 E-value=0.044 Score=48.81 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=64.7
Q ss_pred CCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 27 TYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 27 ~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
+-...|++-.+..-...+..+|+|...=.+.+||| .+.++.+. + ..|..+-+-+.
T Consensus 90 e~g~VDl~~~~g~n~p~lk~~~~L~~~~~~~LPnw-r~~d~ql~---------------------~---tdf~~pt~Gl~ 144 (384)
T COG4134 90 EGGSVDLLWINGENFPTLKEAGLLYTPWAEDLPNW-RYVDHQLP---------------------R---TDFSVPTEGLE 144 (384)
T ss_pred cCCceEEEEecCccchhhhhccccccchhhhCccc-hhhchhcc---------------------c---cccCCCCCccc
Confidence 33459999999999999999999987644678999 88887633 1 11222234478
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYR 139 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~ 139 (142)
+||.-+.+++.|++++++. +|.|-++|..
T Consensus 145 ~~~~~~q~~f~yd~~k~~~----~P~s~eeLL~ 173 (384)
T COG4134 145 SPWGGNQLVFIYDRDKVPQ----VPQSFEELLV 173 (384)
T ss_pred ccccCCcceEEEccccCCC----CCcCHHHHHH
Confidence 9999999999999998874 7899998863
No 24
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein. This model describes binding proteins functionally associated with the sulfate ABC transporter. In the model bacterium E. coli, two different members work with the same transporter; mutation analysis says each enables the uptake of both sulfate and thiosulfate. In many species, a single binding protein is found, and may be referred to in general terms as a sulfate ABC transporter sulfate-binding protein.
Probab=95.05 E-value=0.048 Score=46.05 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=23.8
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
++||. +++||+|+++... .|+||++|+++
T Consensus 98 ~~~~~-~~lvl~v~k~~~~-----~i~sw~dL~~~ 126 (315)
T TIGR00971 98 SAPYT-STIVFLVRKGNPK-----QIHDWNDLIKP 126 (315)
T ss_pred CCccc-eeEEEEEeCCCCC-----CCCCHHHHhCC
Confidence 68888 8999999988653 36899999864
No 25
>PRK10852 thiosulfate transporter subunit; Provisional
Probab=93.81 E-value=0.097 Score=45.16 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=24.1
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
++|| .++++|++|++.-+ .|+||+||.++
T Consensus 115 ~~p~-~s~lV~vv~kgnpk-----~i~sw~DL~~~ 143 (338)
T PRK10852 115 SSPF-YSTMAFLVRKGNPK-----NIHDWNDLVRS 143 (338)
T ss_pred CCcc-cceEEEEEECCCCC-----CCCCHHHhcCC
Confidence 7888 79999999998653 47999999864
No 26
>PRK10752 sulfate transporter subunit; Provisional
Probab=90.28 E-value=0.8 Score=39.41 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=43.2
Q ss_pred CcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
...||++.++ .++..+.++|++++ .|...+. . + + .
T Consensus 75 ~~aDV~~~a~~~~~~~l~~~gli~~-------~~~~~l~-------------------------~---------n--~-~ 110 (329)
T PRK10752 75 IEADVVTLALAYDVDAIAERGRIDK-------NWIKRLP-------------------------D---------N--S-A 110 (329)
T ss_pred CCCCEEEeCCHHHHHHHHHCCCCCC-------cchhhhh-------------------------c---------c--c-c
Confidence 5799999986 78999999999986 2411111 0 1 1 2
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
| ..++++|++++..-+ .|++|+||.++
T Consensus 111 ~-~~~~lviiv~~gnp~-----~i~~w~DL~~~ 137 (329)
T PRK10752 111 P-YTSTIVFLVRKGNPK-----QIHDWNDLIKP 137 (329)
T ss_pred c-cceeEEEEEECCCCC-----CCCCHHHhcCC
Confidence 3 467889999987543 36899999764
No 27
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A ....
Probab=90.17 E-value=1.1 Score=34.59 Aligned_cols=30 Identities=20% Similarity=0.074 Sum_probs=24.4
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
..|+....++|+|+++.- ..+.+|++|.++
T Consensus 73 ~~~~~~~~~vl~~~~~~~-----~~~~~~~dL~~~ 102 (230)
T PF13531_consen 73 PAPLARSPLVLAVPKGNP-----KGIRSWADLAQP 102 (230)
T ss_dssp EEEEEEEEEEEEEETTST-----TSTTCHHHHCST
T ss_pred ccccccCceEEEeccCcc-----cccCCHHHHhhc
Confidence 577888889999999983 247899999865
No 28
>PRK10677 modA molybdate transporter periplasmic protein; Provisional
Probab=82.74 E-value=5.1 Score=32.75 Aligned_cols=32 Identities=6% Similarity=-0.075 Sum_probs=21.4
Q ss_pred eeeeeeeEEEEechhh-hhcCCCCCCcHHHHhh
Q 040772 108 PYRWGTMVIAYQKSKF-RKHNLALIEFDGKRYR 139 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~-~~~g~~pp~SW~dL~~ 139 (142)
+|..+..+|+|+++.- ++..+.++++|.||.+
T Consensus 103 ~~a~n~lvl~~~~~~~~~~i~~~~~~~~~dLl~ 135 (257)
T PRK10677 103 TLLGNSLVVVAPKASEQKDFTIDKKTDWKSLLN 135 (257)
T ss_pred eeecCEEEEEEECCCccccccccCccCHHHhcC
Confidence 4677788899998742 2222345688998864
No 29
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=61.83 E-value=11 Score=33.50 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=22.1
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
++||. .|+++..||.-=+ .|++|+||-++
T Consensus 126 s~Pyt-StivFlVRkGNPK-----~I~DW~DL~k~ 154 (348)
T COG1613 126 SAPYT-STIVFLVRKGNPK-----QIRDWDDLVKP 154 (348)
T ss_pred CCCcc-ceEEEEEecCCcc-----ccCchHHhccC
Confidence 78986 6778888876543 38999999875
No 30
>KOG2951 consensus Inositol monophosphatase [Carbohydrate transport and metabolism]
Probab=26.99 E-value=61 Score=28.21 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=48.3
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcc----cchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCC-CCC-
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAED----QDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDP-RCE- 103 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l----~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp-~g~- 103 (142)
.+|+|...|..++.++-+++.+.....++ .-+ ++-...+. .++.=-+|| ||-
T Consensus 41 ~~DlVT~~Dk~vE~~l~e~i~~~~P~hkfIGEE~~a-~~~~~~lT---------------------d~PTWIIDPIDGTt 98 (279)
T KOG2951|consen 41 FVDLVTATDKQVEELLIEGIKARYPSHKFIGEESTA-KGETKELT---------------------DAPTWIIDPIDGTT 98 (279)
T ss_pred ccceeehhHHHHHHHHHHHHHHhCCCceeeeehhhh-cCCcceec---------------------CCCcEEEcCCCCcc
Confidence 79999999999999999999988864331 112 21111111 011111344 232
Q ss_pred --eeeeeeeeeeeEEEEechhhh
Q 040772 104 --IWAAPYRWGTMVIAYQKSKFR 124 (142)
Q Consensus 104 --~yavPY~wGt~gIaYnkd~~~ 124 (142)
+++.|+..-++|+++||..+-
T Consensus 99 NFVh~~P~~ciSiGLaink~~v~ 121 (279)
T KOG2951|consen 99 NFVHGFPHVCISIGLAINKEPVV 121 (279)
T ss_pred ccccCCCeeEEeeeehhcCeeEE
Confidence 678999999999999998774
Done!