Query 040772
Match_columns 142
No_of_seqs 125 out of 1021
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 18:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gl0_A LMO0810 protein; struct 99.7 3.7E-18 1.3E-22 136.5 6.4 83 29-140 58-140 (333)
2 3ttm_A Polyamine transport pro 99.7 6.1E-17 2.1E-21 128.8 6.8 88 29-140 55-144 (346)
3 3ttn_A Polyamine transport pro 99.7 1.1E-16 3.8E-21 126.3 7.7 88 29-140 52-140 (340)
4 4eqb_A Spermidine/putrescine A 99.6 2.3E-16 7.9E-21 125.3 5.7 82 29-140 56-137 (330)
5 1a99_A POTF, putrescine-bindin 99.5 3E-14 1E-18 113.2 7.9 88 29-140 51-140 (344)
6 1pot_A POTD, spermidine/putres 99.5 2.4E-14 8.2E-19 113.2 6.9 83 29-140 52-134 (325)
7 4i1d_A ABC transporter substra 99.5 9.8E-14 3.4E-18 109.3 7.8 78 27-140 53-130 (324)
8 4euo_A ABC transporter, substr 99.4 3.8E-13 1.3E-17 106.6 7.6 76 27-140 50-125 (320)
9 3pu5_A Extracellular solute-bi 99.4 9.7E-13 3.3E-17 104.0 8.1 79 28-140 57-135 (333)
10 2v84_A Spermidine/putrescine A 99.3 7.3E-13 2.5E-17 106.2 5.8 83 29-140 72-154 (343)
11 3k01_A Acarbose/maltose bindin 99.3 2.2E-12 7.7E-17 105.0 7.1 85 30-140 84-169 (412)
12 3quf_A Extracellular solute-bi 99.3 6.9E-12 2.4E-16 101.9 7.3 84 29-140 82-166 (414)
13 3oo8_A ABC transporter binding 99.2 1E-11 3.5E-16 100.9 7.1 86 30-140 82-168 (415)
14 2heu_A Sugar ABC transporter, 99.2 3.5E-11 1.2E-15 98.1 8.3 84 29-140 70-155 (401)
15 3rpw_A ABC transporter; struct 99.2 1.6E-11 5.4E-16 98.4 6.1 77 27-140 83-165 (365)
16 2z8f_A Galacto-N-biose/lacto-N 99.2 1.7E-11 6E-16 100.2 5.4 85 30-140 74-159 (412)
17 3uor_A ABC transporter sugar b 99.2 1.6E-11 5.6E-16 102.4 5.3 86 29-140 82-172 (458)
18 3thi_A Protein (thiaminase I); 99.2 5.3E-11 1.8E-15 95.1 7.5 87 25-140 44-130 (371)
19 2uvj_A TOGB, ABC type periplas 99.2 5.1E-11 1.7E-15 96.8 6.9 86 29-140 60-147 (408)
20 4edp_A ABC transporter, substr 99.1 1.4E-11 4.7E-16 96.4 3.0 78 29-140 85-162 (351)
21 1elj_A Maltodextrin-binding pr 99.1 1E-10 3.5E-15 94.4 7.7 83 29-140 58-140 (381)
22 1eu8_A Trehalose/maltose bindi 99.1 1E-10 3.5E-15 95.1 6.2 85 30-140 62-151 (409)
23 3i3v_A Probable secreted solut 99.1 4.1E-11 1.4E-15 97.0 3.8 87 29-140 63-153 (405)
24 4gqo_A LMO0859 protein; virule 99.1 1.8E-10 6.1E-15 93.8 6.8 87 29-140 85-176 (433)
25 2gha_A Maltose ABC transporter 99.1 2.5E-10 8.7E-15 92.2 7.5 80 29-140 54-133 (382)
26 2b3f_A Glucose-binding protein 99.0 1.3E-10 4.3E-15 94.7 4.2 85 30-140 59-148 (400)
27 1xvx_A YFUA; periplasmic iron 99.0 2.1E-10 7.3E-15 89.8 5.2 76 29-140 54-130 (312)
28 1mh3_A Maltose binding-A1 home 99.0 3.2E-10 1.1E-14 92.7 5.9 81 29-140 55-135 (421)
29 4g68_A ABC transporter; transp 99.0 4.7E-10 1.6E-14 93.3 7.0 86 29-140 118-205 (456)
30 2xd3_A MALX, maltose/maltodext 99.0 9.3E-10 3.2E-14 90.0 8.4 79 30-140 87-165 (416)
31 3iot_A Maltose-binding protein 99.0 4.8E-10 1.7E-14 93.5 6.0 80 30-140 56-135 (449)
32 1urs_A Maltose-binding protein 99.0 8.2E-10 2.8E-14 89.8 7.1 79 30-139 85-164 (402)
33 2pt1_A Iron transport protein; 99.0 3.1E-10 1.1E-14 89.6 4.3 76 29-140 68-144 (334)
34 2gh9_A Maltose/maltodextrin-bi 99.0 7.5E-10 2.6E-14 89.5 6.5 82 30-140 55-137 (386)
35 4aq4_A SN-glycerol-3-phosphate 99.0 3.8E-10 1.3E-14 90.5 4.7 88 29-140 61-156 (419)
36 4hw8_A Bacterial extracellular 99.0 7.4E-10 2.5E-14 90.5 6.2 81 29-140 93-173 (420)
37 2zyo_A Solute-binding protein; 99.0 8.4E-10 2.9E-14 89.3 6.4 80 30-140 74-153 (397)
38 3dm0_A Maltose-binding peripla 99.0 3.8E-10 1.3E-14 97.2 4.4 80 29-139 55-134 (694)
39 3csg_A MBP, maltose-binding pr 98.9 6.6E-10 2.2E-14 93.0 5.5 81 29-140 53-133 (461)
40 3oai_A Maltose-binding peripla 98.9 8.6E-10 2.9E-14 91.6 5.4 81 29-140 55-135 (507)
41 3mq9_A Bone marrow stromal ant 98.9 9E-10 3.1E-14 93.5 5.6 81 29-140 69-149 (471)
42 3ob4_A Conglutin, maltose ABC 98.9 8.9E-10 3E-14 94.2 5.5 81 29-140 55-135 (500)
43 4hs7_A Bacterial extracellular 98.9 1.7E-09 5.9E-14 88.4 6.9 81 29-140 93-173 (420)
44 1q35_A Iron binding protein FB 98.9 1.3E-09 4.6E-14 85.3 5.6 77 29-140 50-127 (320)
45 3o3u_N Maltose-binding peripla 98.9 1.3E-09 4.5E-14 91.7 5.9 81 29-140 55-135 (581)
46 3n94_A Fusion protein of malto 98.9 1.5E-09 5E-14 91.2 5.8 80 30-140 58-137 (475)
47 2xz3_A Maltose ABC transporter 98.9 1.3E-09 4.3E-14 92.4 5.3 81 29-140 56-136 (463)
48 1y4c_A Maltose binding protein 98.9 1.6E-09 5.4E-14 94.0 5.9 81 29-140 55-135 (494)
49 4dxb_A RG13, maltose-binding p 98.9 1.1E-09 3.6E-14 96.9 4.9 81 29-140 55-135 (637)
50 2zxt_A Maltose-binding peripla 98.9 1.1E-09 3.7E-14 92.9 4.7 81 29-140 55-135 (465)
51 3omb_A Extracellular solute-bi 98.9 1.4E-09 4.8E-14 92.4 5.2 87 29-141 94-192 (535)
52 2vgq_A Maltose-binding peripla 98.9 1.8E-09 6.3E-14 91.2 5.9 81 29-140 70-150 (477)
53 2qry_A Thiamine-binding peripl 98.9 2E-09 6.8E-14 85.7 5.7 71 29-140 77-150 (330)
54 1hsj_A Fusion protein consisti 98.9 1.4E-09 4.8E-14 91.4 4.6 81 29-140 55-135 (487)
55 2voz_A FUTA2, periplasmic iron 98.9 1.6E-09 5.5E-14 85.7 4.4 76 29-140 78-154 (346)
56 1r6z_P Chimera of maltose-bind 98.8 2.3E-09 7.8E-14 91.3 5.4 81 29-140 56-136 (509)
57 3a09_A ALGQ1; sugar binding pr 98.8 2.7E-09 9.2E-14 87.7 5.6 91 29-141 66-164 (490)
58 3py7_A Maltose-binding peripla 98.8 3.1E-09 1.1E-13 91.0 5.8 80 30-140 57-136 (523)
59 4h1g_A Maltose binding protein 98.8 3E-09 1E-13 96.1 5.9 81 29-140 56-136 (715)
60 1nnf_A Iron-utilization peripl 98.8 2.8E-09 9.5E-14 83.1 4.9 78 29-140 49-127 (309)
61 4exk_A Maltose-binding peripla 98.8 3.4E-09 1.2E-13 91.2 5.4 81 29-140 59-139 (487)
62 3h3g_A Fusion protein of malto 98.8 4E-09 1.4E-13 90.7 5.9 81 29-140 57-137 (539)
63 4b3n_A Maltose-binding peripla 98.8 3.4E-09 1.2E-13 93.1 5.5 81 29-140 69-149 (602)
64 3mp6_A MBP, SGF29, maltose-bin 98.8 4.3E-09 1.5E-13 90.5 5.8 81 29-140 56-136 (522)
65 2w7y_A FCSSBP, probable sugar 98.8 1.4E-09 4.8E-14 89.1 2.5 84 29-140 98-188 (430)
66 3f5f_A Maltose-binding peripla 98.8 5.1E-09 1.7E-13 92.5 6.0 81 29-140 55-135 (658)
67 3vlv_A ALGQ1; sugar binding pr 98.8 5.8E-09 2E-13 88.3 5.9 88 29-141 66-164 (502)
68 3h4z_A Maltose-binding peripla 98.8 5E-09 1.7E-13 91.9 4.6 80 30-140 56-135 (568)
69 3osr_A Maltose-binding peripla 98.8 6.1E-09 2.1E-13 93.8 5.3 80 30-140 92-171 (653)
70 3e13_X Putative iron-uptake AB 98.7 7.5E-09 2.6E-13 80.4 5.0 77 28-140 50-128 (322)
71 3osq_A Maltose-binding peripla 98.7 8.4E-09 2.9E-13 92.9 5.6 81 30-141 92-172 (661)
72 1y9u_A Putative iron binding p 98.7 9.6E-09 3.3E-13 80.5 3.8 72 29-140 54-128 (323)
73 2nvu_B Maltose binding protein 98.7 1.4E-08 4.8E-13 92.1 5.3 81 29-140 59-139 (805)
74 3c9h_A ABC transporter, substr 98.7 4.8E-08 1.7E-12 78.4 7.8 75 28-139 85-160 (355)
75 1sbp_A Sulfate-binding protein 98.0 3.8E-06 1.3E-10 65.2 4.0 62 29-140 56-118 (310)
76 3cg1_A UPF0100 protein PF0080; 96.1 0.0042 1.4E-07 48.5 3.8 34 105-138 83-117 (296)
77 2hxw_A Major antigenic peptide 95.4 0.024 8.3E-07 42.0 5.5 29 107-140 76-104 (237)
78 3cfx_A UPF0100 protein MA_0280 95.4 0.032 1.1E-06 43.8 6.4 33 105-138 78-110 (296)
79 3cij_A UPF0100 protein AF_0094 94.7 0.063 2.2E-06 41.9 6.1 33 105-138 78-110 (295)
80 3cfz_A UPF0100 protein MJ1186; 94.6 0.067 2.3E-06 41.9 6.1 33 105-138 78-110 (292)
81 3r26_A Molybdate-binding perip 92.8 0.29 1E-05 37.3 6.6 34 106-139 81-115 (237)
82 3gzg_A Molybdate-binding perip 85.8 2.2 7.6E-05 33.2 6.8 18 106-123 97-114 (253)
83 1atg_A MODA, periplasmic molyb 83.5 1.2 4.2E-05 31.5 4.0 29 106-140 74-102 (231)
84 3km3_A DCTP deaminase, deoxycy 28.4 31 0.0011 27.1 2.4 27 33-59 22-49 (206)
No 1
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=99.72 E-value=3.7e-18 Score=136.52 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=74.0
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++|||++++.++.+++++|+|+|+|.++++|+ +++++.+. . ..+|+ |+.|++|
T Consensus 58 ~~~DVv~~~~~~~~~~~~~gll~~ld~~~~~n~-~~~~~~~~-----------------~-------~~~~~-~~~y~vp 111 (333)
T 4gl0_A 58 TTFDIAVPSDYAISKMKEENLLIPLDHSKLPNE-KYLDPRFM-----------------D-------LSFDD-DNKYSMP 111 (333)
T ss_dssp SCCSEECCBHHHHHHHHHTTCBCCCCGGGCGGG-GGBCGGGS-----------------S-------CGGGG-GGSSEEE
T ss_pred CCCeEEEeCHHHHHHHHHcCCcccccccccccc-ccCCHHHh-----------------h-------hccCC-CCceEec
Confidence 589999999999999999999999999999999 99998866 1 22344 7889999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|.||++||+||+++|++ .+|+||++||+|
T Consensus 112 ~~~~~~~i~yn~~~~~~---~~~~sw~dl~dp 140 (333)
T 4gl0_A 112 YFWGTLGIIYNKEMFPD---KNFDTWNALFDP 140 (333)
T ss_dssp EEEEEEEEEEETTTCTT---CCTTSGGGGGCG
T ss_pred eeeeeeeeeechhhccc---CCcccHHhhcCH
Confidence 99999999999999986 468999999987
No 2
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=99.67 E-value=6.1e-17 Score=128.82 Aligned_cols=88 Identities=24% Similarity=0.349 Sum_probs=77.6
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++|||.+++.++.+++++|+|+|||.++++++ +++.+.++ ... ...++ |+.|++|
T Consensus 55 ~~~Dv~~~~~~~~~~~~~~g~l~~ld~~~~~~~-~~~~~~~~-----------------~~~-----~~~~~-g~~y~vP 110 (346)
T 3ttm_A 55 SGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNW-KNLNKDLM-----------------HTL-----EVSDP-GNEHAIP 110 (346)
T ss_dssp CSCSEECCBHHHHHHHHHTTCBCCCCGGGCGGG-GGBCHHHH-----------------HHH-----TTTSG-GGCSEEE
T ss_pred CCCcEEEeCHHHHHHHHHCCCcccCChhhCcCh-hhcCHHHH-----------------hcc-----ccCCC-CCeEEeE
Confidence 579999999999999999999999999999999 99998877 221 11343 8899999
Q ss_pred eeeeeeEEEEechhhhh-cCCC-CCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRK-HNLA-LIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~-~g~~-pp~SW~dL~~~ 140 (142)
|.|++++|+||++.|++ +|++ +|+||++|+++
T Consensus 111 ~~~~~~~l~Ynkd~~~~~~G~~~~p~tw~dl~~~ 144 (346)
T 3ttm_A 111 YMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKP 144 (346)
T ss_dssp EEEEEEEEEECHHHHHHHHCTTCCTTSTHHHHSH
T ss_pred EeeccEEEEEEhHHhhhhccCCCCCCcHHHHhCh
Confidence 99999999999999999 8987 89999999975
No 3
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A*
Probab=99.66 E-value=1.1e-16 Score=126.32 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=77.4
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.+++.++..++++|+|+|||.++++++ +++.+.++ .... ..+ +|+.||||
T Consensus 52 ~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~-----------------~~~~-----~~~-~g~~y~vP 107 (340)
T 3ttn_A 52 SGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNW-KNLDPALL-----------------KQLE-----VSD-PGNQYAVP 107 (340)
T ss_dssp CCCSEECCBHHHHHHHHHTTCBCCCCGGGCGGG-GGSCHHHH-----------------HHHT-----TTS-GGGCSEEE
T ss_pred CCCcEEEECHHHHHHHHHCCCcCcCChhhCcCh-hhcCHHHH-----------------hccc-----ccC-CCCeEEeE
Confidence 579999999999999999999999999999999 99998877 3211 123 38899999
Q ss_pred eeeeeeEEEEechhhhh-cCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRK-HNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~-~g~~pp~SW~dL~~~ 140 (142)
|.+++++|+||++.|++ +|+++|+||++|+++
T Consensus 108 ~~~~~~~l~Ynkd~~~~a~G~~~P~tw~dl~~~ 140 (340)
T 3ttn_A 108 YLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEP 140 (340)
T ss_dssp EEEEEEEEEEEHHHHHHHHCSCCCCSTHHHHCH
T ss_pred EEeeeeEEEEehHHhccccCCCCCccHHHHhCh
Confidence 99999999999999999 799999999999975
No 4
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=99.63 E-value=2.3e-16 Score=125.33 Aligned_cols=82 Identities=17% Similarity=0.312 Sum_probs=72.9
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+++++.++.+++++|+|+|||.+.++|+ +++.+.++ . ...++ |+.||||
T Consensus 56 ~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~-----------------~-------~~~~~-g~~y~vP 109 (330)
T 4eqb_A 56 TTYDIAIPSEYMINKMKDEDLLVPLDYSKIEGI-ENIGPEFL-----------------N-------QSFDP-GNKFSIP 109 (330)
T ss_dssp SCCSEECCBHHHHHHHHHTTCBCCCCGGGCCCG-GGBCGGGS-----------------S-------CTTSG-GGSSCEE
T ss_pred CCCCEEEECHHHHHHHHHCCCccCCChhhCcCh-hhCCHHHH-----------------c-------cCcCC-CCeEEEE
Confidence 579999999999999999999999999999999 99998877 2 22344 8899999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|.||+++|+|||+.|++ +|+||++|+++
T Consensus 110 ~~~~~~~l~Ynkd~~~~----~p~tw~el~~~ 137 (330)
T 4eqb_A 110 YFWGTLGIVYNETMVDE----APEHWDDLWKL 137 (330)
T ss_dssp EEEEEEEEEEEGGGCSS----CCCSGGGGGCG
T ss_pred EecccEEEEEEHHHcCC----CCCCHHHHhCh
Confidence 99999999999999974 78999999974
No 5
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1
Probab=99.51 E-value=3e-14 Score=113.16 Aligned_cols=88 Identities=20% Similarity=0.294 Sum_probs=74.9
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.+++.++..++++|+|+||+..+++++ +++.+.++ .... .+| +|+.||+|
T Consensus 51 ~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~-----------------~~~~-----~~~-~g~~y~vP 106 (344)
T 1a99_A 51 TGFDLVVPSASFLERQLTAGVFQPLDKSKLPEW-KNLDPELL-----------------KLVA-----KHD-PDNKFAMP 106 (344)
T ss_dssp CCCSEECCBHHHHHHHHHTTCBCCCCGGGCGGG-GGBCHHHH-----------------HHHH-----TTS-GGGCSEEE
T ss_pred CCCcEEEECHHHHHHHHHCCCcccCChhhCcCh-hhcCHHHh-----------------hhhh-----ccC-CCCcEEee
Confidence 579999999999999999999999998777888 88888765 2220 122 38899999
Q ss_pred eeeeeeEEEEechhhhhc-CCC-CCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKH-NLA-LIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~-g~~-pp~SW~dL~~~ 140 (142)
|.+++++|+|||+.|+++ |++ ||+||++|+++
T Consensus 107 ~~~~~~~l~Ynkd~~~~alGl~~~p~tw~el~~~ 140 (344)
T 1a99_A 107 YMWATTGIGYNVDKVKAVLGENAPVDSWDLILKP 140 (344)
T ss_dssp EEEEEEEEEEEHHHHHHHHCTTCCTTSTHHHHSH
T ss_pred EEeeeEEEEEEhHHcccccccCCCCCCHHHHcCH
Confidence 999999999999999996 988 79999999874
No 6
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=99.50 E-value=2.4e-14 Score=113.20 Aligned_cols=83 Identities=17% Similarity=0.206 Sum_probs=71.6
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.+++.++..++++|+|+||+.++++++ +++.+.++ .. ..+ +|+.||||
T Consensus 52 ~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~-----------------~~-------~~~-~g~~y~vP 105 (325)
T 1pot_A 52 GAYDLVVPSTYYVDKMRKEGMIQKIDKSKLTNF-SNLDPDML-----------------NK-------PFD-PNNDYSIP 105 (325)
T ss_dssp SCSSBBCCBGGGHHHHHHHTCBCCCCTTSCTTG-GGBCGGGS-----------------CC-------TTS-TTCSSCEE
T ss_pred CCCcEEEECHHHHHHHHHCCCcCCCChhhCcCh-hhcCHHHh-----------------cc-------CCC-CCCcEEee
Confidence 589999999999999999999999998888898 88888766 21 123 38999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|.+++++|+||++.|++ .||+||++|+++
T Consensus 106 ~~~~~~~l~Ynkd~~~~---~p~~tw~dl~~~ 134 (325)
T 1pot_A 106 YIWGATAIGVNGDAVDP---KSVTSWADLWKP 134 (325)
T ss_dssp EEEEEEEEEEETTTSCT---TTCCSSGGGGSG
T ss_pred EeeeeEEEEEEHHHcCC---CCCCCHHHHcCH
Confidence 99999999999999987 367999999875
No 7
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum}
Probab=99.46 E-value=9.8e-14 Score=109.34 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=68.8
Q ss_pred CCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 27 TYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 27 ~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
....+||+.+++.++.+++++|+|+|+|.+.++++ +++.+.+. +.|+
T Consensus 53 g~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~--------------------------------~~y~ 99 (324)
T 4i1d_A 53 GKPIWDVVDTPTGYCLRGGEQGLIEKLDFSKIPNA-AAMPEAYR--------------------------------SPYS 99 (324)
T ss_dssp TCCSCCEEEEEHHHHHHHHHTTCBCCCCGGGCHHH-HTSCGGGB--------------------------------CSSC
T ss_pred CCCCeEEEECCHHHHHHHHHCCCcccCChhhCcCh-hhCCcccc--------------------------------cCce
Confidence 34589999999999999999999999998888888 88876533 4599
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+||.+++++|+||++.|++ .+|+||++|+++
T Consensus 100 vp~~~~~~~l~yn~~~~~~---~~P~tw~dl~~~ 130 (324)
T 4i1d_A 100 VSYEFYSSVLAYSQKTFPK---DAPNSWVDFWDV 130 (324)
T ss_dssp EEEEEEEEEEEEETTTCSS---CCCCSHHHHHCT
T ss_pred eeeecceEEEEEehhhcCC---CCCCCHHHHhCh
Confidence 9999999999999999986 578999999986
No 8
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=99.41 E-value=3.8e-13 Score=106.62 Aligned_cols=76 Identities=13% Similarity=0.042 Sum_probs=66.8
Q ss_pred CCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 27 TYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 27 ~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
....+||+.+++.++.+++++|+|+|++.+.+ ++ +++.+.++ +.|+
T Consensus 50 g~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~-~~-~~~~~~~~--------------------------------~~y~ 95 (320)
T 4euo_A 50 NGVTWDVVDVEGDYAAQAGPKGLLEKLDFSVI-DK-TKLDPRFV--------------------------------TDYS 95 (320)
T ss_dssp TCCCCSEEEEEHHHHHHHTTTTCBCCCCTTTS-CG-GGBCGGGC--------------------------------BTTB
T ss_pred CCCCceEEEcCHHHHHHHHHCCCcccCChhhC-Ch-hhCChhhc--------------------------------ccce
Confidence 44579999999999999999999999998877 88 88876544 2489
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+||.+++++|+||++.+++ +|+||++|+++
T Consensus 96 ~p~~~~~~~l~yn~~~~~~----~P~tw~dl~~~ 125 (320)
T 4euo_A 96 VGSFYYSFVIGCNVDSVSA----CPKSWADLFDT 125 (320)
T ss_dssp EEEEEEEEEEEECGGGSSC----CCCSHHHHTCT
T ss_pred eeeeeeeEEEEEEhhhhCC----CCCCHHHHhCh
Confidence 9999999999999999986 68999999985
No 9
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis}
Probab=99.38 E-value=9.7e-13 Score=104.00 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=69.7
Q ss_pred CCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 28 YMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 28 ~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
...+||+.+++.++..++++|+|+|+|.++++++ +++.+.++ . . ++.|++
T Consensus 57 ~~~~Dv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~-----------------~-----------~-~~~y~v 106 (333)
T 3pu5_A 57 TPPYDVAAFGGNDMYRLIRAKKLAQVDEKSVPSL-ADVPEKFK-----------------A-----------D-WEGCGS 106 (333)
T ss_dssp SCSCSEEEECHHHHHHHHHTTCBCCCCTTTCGGG-GGSCGGGT-----------------G-----------G-GTTSCE
T ss_pred CCCCCEEEEChHHHHHHHHCcCcccCChhhCCCh-hhCCHHHH-----------------h-----------c-cCCccc
Confidence 4679999999999999999999999999889999 99888766 2 1 145999
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
||.+++++|+||++.|++ +|+||++|+++
T Consensus 107 P~~~~~~~l~ynkd~~~~----~P~tw~dl~~~ 135 (333)
T 3pu5_A 107 LYDYSSVGIAYRPDKIQG----GVKSWKEFVER 135 (333)
T ss_dssp ECCBEEEEEEECTTTSTT----CCSSHHHHHHH
T ss_pred eeEeeeeEEEEchhhcCC----CCCCHHHHhCh
Confidence 999999999999999985 78999999974
No 10
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum}
Probab=99.35 E-value=7.3e-13 Score=106.18 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=70.6
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.+++.++..++++|+|+||+...++++ +++.+.++ ... ..+ +|+.||+|
T Consensus 72 ~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~-----------------~~~------~~~-~G~~y~vP 126 (343)
T 2v84_A 72 SGYDLVVPSGDFVSIMKRKHLLEKIDLSKIPNV-QFIKESVR-----------------ARI------AYD-PKMEYSVP 126 (343)
T ss_dssp CSCSEECCBHHHHHHHHHTTCEECCCGGGCGGG-GGBCHHHH-----------------HHC------TTS-TTCSSCEE
T ss_pred CCCCEEEcCHHHHHHHHHCCCcccCChhhCcCh-hhcCHHHh-----------------ccc------ccC-CCceEEee
Confidence 579999999999999999999999998777888 88888766 211 123 38999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|.+++.+++|||+.|++ +|+||++|+++
T Consensus 127 ~~~~~~~l~YNkd~~~~----~P~Tw~el~~~ 154 (343)
T 2v84_A 127 YYLGAAGIAVNKKAVPS----YARTWSIFSRK 154 (343)
T ss_dssp EEEECCEEEEETTTCCS----CCSSGGGGGCG
T ss_pred eEeccEEEEEEhHhcCC----CCCCHHHHhCH
Confidence 99999999999999986 68999999874
No 11
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=99.32 E-value=2.2e-12 Score=104.97 Aligned_cols=85 Identities=14% Similarity=0.129 Sum_probs=70.6
Q ss_pred cceEEEeChHHHHHHHHccccccCCC-CcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAG-AEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~-s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.+||+.++..++..++++|+|+||+. ....++ +++.+... .. ..+ +|+.||+|
T Consensus 84 ~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~-~~~~~~~~-----------------~~------~~~--dG~~y~vP 137 (412)
T 3k01_A 84 APDVMRTEVAWVADFASIGYLAPLDGTPALDDG-SDHLPQAA-----------------AS------TRY--EGKTYAVP 137 (412)
T ss_dssp CCSEEEEEHHHHHHHHHTTCBCCCTTSGGGCSC-TTBCHHHH-----------------HT------TEE--TTEECCEE
T ss_pred CCCEEEecCccHHHHHhcCCcccCchhccccch-hhcCHHHH-----------------Hh------ccc--CCcEEEee
Confidence 59999999899999999999999996 333455 66665544 21 223 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|+++|+++|+||++|.+.
T Consensus 138 ~~~~~~~l~ynkdl~~~~Gl~~P~Twdel~~~ 169 (412)
T 3k01_A 138 QVIDTLALFYNKELLTKAGVEVPGSVAELKTA 169 (412)
T ss_dssp EEEEECEEEEEHHHHHHHTCCCCSBHHHHHHH
T ss_pred eecceeEEEEEHHHHHHcCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999874
No 12
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=99.27 E-value=6.9e-12 Score=101.89 Aligned_cols=84 Identities=7% Similarity=0.005 Sum_probs=70.2
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.. +.+ +++.+... ... . .+|+.||+|
T Consensus 82 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~--~~~-~~~~~~~~-----------------~~~------~--~dG~~y~vP 133 (414)
T 3quf_A 82 KPPTIFNLTMDNRTDVMKSGAALDISGE--DFL-DGIDDTNF-----------------ALF------Q--QDGKTYGMP 133 (414)
T ss_dssp SCCSEEEECTTTHHHHHHHTCBCCCTTC--GGG-TTBCGGGG-----------------GGG------E--ETTEECCBC
T ss_pred CCCCEEEECCcchHHHHhCCeeecCCcc--hhh-hhcCHHHH-----------------hhc------c--cCCeEEEec
Confidence 3799999999999999999999999853 334 66666544 211 1 249999999
Q ss_pred eeeeeeEEEEechhhhhcCCC-CCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLA-LIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~-pp~SW~dL~~~ 140 (142)
+.+++.++.||+|.|+++|++ +|+||++|.+.
T Consensus 134 ~~~~~~~l~ynkdl~~~~G~~~~P~Twdel~~~ 166 (414)
T 3quf_A 134 VSAWVGAFFYNKDILKKAGYDKFPKTWDEFIEM 166 (414)
T ss_dssp CEEEEEEEEEEHHHHHHTTCSSCCSBHHHHHHH
T ss_pred cccceeEEEEeHHHHHhcCCCCCCCCHHHHHHH
Confidence 999999999999999999998 99999999874
No 13
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=99.24 E-value=1e-11 Score=100.88 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=68.1
Q ss_pred cceEEEe-ChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 30 AADLVSV-GDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 30 ~~DvV~~-sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.+||+.. +..++..++++|+|+||+. .+.+|-+++.+.+. .. ..+ ++|+.||+|
T Consensus 82 ~pDv~~~~~~~~~~~~~~~g~l~~L~~-~~~~~~~~~~~~~~-----------------~~------~~~-~~G~~y~vP 136 (415)
T 3oo8_A 82 PDSLATWFAGYRLQFFAAQGLLTPIDD-VWDKIGGTFNDAAK-----------------SL------SKG-LDGHYYLVP 136 (415)
T ss_dssp CCSEEEEESSHHHHHHHHTTCBCCCHH-HHHHHGGGSCHHHH-----------------HH------TBC-TTSCBCEEE
T ss_pred CCCEEEecCcchHHHHHHCCceeccHH-HHHHHHhhcCHHHH-----------------hh------ccc-cCCcEEEEe
Confidence 5999965 7888999999999999983 23345234555443 22 122 249999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|+++|+++|+||++|++.
T Consensus 137 ~~~~~~~l~Ynkdl~~~~G~~~P~Twdel~~~ 168 (415)
T 3oo8_A 137 LYNYPWVVFYNKSVFQSKGYEVPASWEAFIAL 168 (415)
T ss_dssp EEECCEEEEEEHHHHHHHTCCCCSBHHHHHHH
T ss_pred cccceEEEEEeHHHHHHcCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999875
No 14
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=99.20 E-value=3.5e-11 Score=98.08 Aligned_cols=84 Identities=17% Similarity=0.169 Sum_probs=68.0
Q ss_pred CcceEEEe-Ch-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 29 MAADLVSV-GD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 29 ~~~DvV~~-sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
..+||+.. +. .++..++++|+|+||+.. +.. +++.+... +. ..+ +|+.||
T Consensus 70 ~~pDv~~~~~~~~~~~~~~~~g~l~~L~~~--~~~-~~~~~~~~-----------------~~------~~~--dG~~y~ 121 (401)
T 2heu_A 70 DVPDVVNIYPQSIELQEWAKAGVFEDLSNK--DYL-KRVKNGYA-----------------EK------YAV--NEKVYN 121 (401)
T ss_dssp CCCSEEECCTTSHHHHHHHHTTCBCCCTTC--GGG-GGBCTTTG-----------------GG------GCB--TTBCCC
T ss_pred CCCCEEEecCCcchHHHHHhCCCeecCCch--HHH-hhccHhhh-----------------hh------eee--CCEEEE
Confidence 47899999 74 788999999999999853 333 55555443 21 122 499999
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+|+..++.++.||||.|+++|+++|+||++|.+.
T Consensus 122 vP~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~ 155 (401)
T 2heu_A 122 VPFTANAYGIYYNKDKFEELGLKVPETWDEFEQL 155 (401)
T ss_dssp EECBBCCEEEEEEHHHHHHHTCCCCCSHHHHHHH
T ss_pred EecccCceEEEEeHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999874
No 15
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris}
Probab=99.20 E-value=1.6e-11 Score=98.43 Aligned_cols=77 Identities=9% Similarity=-0.035 Sum_probs=64.0
Q ss_pred CCCcceEEEeChHHHHHHHHccccccCCCCcccchhh------hcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCC
Q 040772 27 TYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFK------CLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDP 100 (142)
Q Consensus 27 ~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp 100 (142)
....+||+..++.++.++++ |+++|+|.+.+ |+ + ++.+.+
T Consensus 83 g~~~~Dv~~~~~~~~~~~~~-g~l~~l~~~~~-~~-~~~~~~~~~~~~~------------------------------- 128 (365)
T 3rpw_A 83 GKAQWDLTFIFDQETKLLGD-CCLADIDYSKL-SE-SAHKTLAAMPDNL------------------------------- 128 (365)
T ss_dssp TCCCCSBEEECHHHHHHTHH-HHBCCCCGGGS-CH-HHHHHHHTSCGGG-------------------------------
T ss_pred CCCCceEEEcCHHHHHHHhC-CCcccCChhhc-Cc-hhhhhhhhcCccc-------------------------------
Confidence 34579999999999999999 99999997766 66 5 333221
Q ss_pred CCCeeeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 101 RCEIWAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 101 ~g~~yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+.|++||.+++++|+||++.|++. .+|+||++|+++
T Consensus 129 -~~~y~~p~~~~~~~l~ynk~~~~~~--~~P~tw~dl~~~ 165 (365)
T 3rpw_A 129 -KRKKGVALQVIGVGLVYNKDKFKGD--KAPQTWADFWDV 165 (365)
T ss_dssp -EETTEEEEEEEEEEEEEETTTSCTT--SSCCSHHHHHCT
T ss_pred -cCCeEEeeeeeeEEEEEEhhhcCCC--CCCCCHHHHhCh
Confidence 4679999999999999999999872 578999999986
No 16
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=99.18 E-value=1.7e-11 Score=100.20 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=68.1
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
.+||+.++..++..++++|+|+||+. .+.++.+++.+... +. ..+ +|+.||+|+
T Consensus 74 ~pDv~~~~~~~~~~~~~~g~l~~L~~-~~~~~~~~~~~~~~-----------------~~------~~~--~G~~y~vP~ 127 (412)
T 2z8f_A 74 APDLAQVGYAELPEVFTKGLLQDVTQ-YAEQYKNDFASGPY-----------------SL------VQV--GGKAYGLPQ 127 (412)
T ss_dssp CCSEEEEEGGGHHHHHHTTCBCCCHH-HHHHHGGGBCHHHH-----------------HT------TEE--TTEECEEEC
T ss_pred CCcEEEeCchhHHHHHHCCCeecchH-HHHHHHHhccHHHH-----------------hh------hcc--CCeEEEeec
Confidence 78999999899999999999999985 23333244444332 11 223 499999999
Q ss_pred eeeeeEEEEechhhhhcCCC-CCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLA-LIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~-pp~SW~dL~~~ 140 (142)
..++.++.||||.|+++|++ +|++|++|.+.
T Consensus 128 ~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~ 159 (412)
T 2z8f_A 128 DTGPLVYFYNKAEFEKLGITEIPQTADEFIAA 159 (412)
T ss_dssp BCCBEEEEEEHHHHHHTTCCSCCCBHHHHHHH
T ss_pred cCCceEEEEeHHHHHHcCCCCCCCCHHHHHHH
Confidence 99999999999999999998 99999999874
No 17
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=99.18 E-value=1.6e-11 Score=102.36 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=69.4
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCccc----chhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCe
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQ----DWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEI 104 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~----n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ 104 (142)
..+||+.++..++..+++.|+|+||+.--.+ ++ +++.+... +. ..+ +|+.
T Consensus 82 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~-~~~~~~~~-----------------~~------~~~--dG~~ 135 (458)
T 3uor_A 82 GLPDVCQLGNTWLPEFALLDTLEPMQPYVARSKIVDP-ADYFPGVW-----------------DT------NLV--DGTL 135 (458)
T ss_dssp CCCSEEEEETTTHHHHHHTTCBCCCHHHHHTCSSCCG-GGBCHHHH-----------------HT------TEE--TTEE
T ss_pred CCCCEEEECcHhHHHHHHCCCccCCchhhhcccccCH-HHhCHHHH-----------------hh------eEE--CCEE
Confidence 3799999998899999999999999842111 44 55665544 21 123 4999
Q ss_pred eeeeeeeeeeEEEEechhhhhcCC-CCCCcHHHHhhh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNL-ALIEFDGKRYRI 140 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~-~pp~SW~dL~~~ 140 (142)
||+|+.+++.++.||||.|+++|+ .+|+||++|.+.
T Consensus 136 y~vP~~~~~~~l~Ynkdl~~~aGl~~~P~Twdel~~~ 172 (458)
T 3uor_A 136 YGVPWYVDTRLLFYRKDLLREAGYSQMPKTWAEMEQV 172 (458)
T ss_dssp CCEEEEEECCEEEEEHHHHHHTTCSSCCCBHHHHHHH
T ss_pred EEecccCcccEEEEeHHHHHHcCCCCCCCCHHHHHHH
Confidence 999999999999999999999999 789999999874
No 18
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=99.16 E-value=5.3e-11 Score=95.08 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=70.2
Q ss_pred CCCCCcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCe
Q 040772 25 SATYMAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEI 104 (142)
Q Consensus 25 ~~~~~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ 104 (142)
.+...++||+.++..++..++++|+|+||+...++++ +++.+... +.. .+| |+.
T Consensus 44 ~~~~~~pDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~-~~~~~~~~-----------------~~~------~~~--G~~ 97 (371)
T 3thi_A 44 ADPPDDLDVFVLDSIFLSHFVDAGYLLPFGSQDIDQA-EDVLPFAL-----------------QGA------KRN--GEV 97 (371)
T ss_dssp CCCCTTCCEEEEEGGGHHHHHHTTCEECBCGGGCTTG-GGBCHHHH-----------------HHT------EET--TEE
T ss_pred ccCCCCCCEEEECchhHHHHHhCCCcccCchhhccCc-cccChHHH-----------------hhe------EEC--CEE
Confidence 3345689999999999999999999999997656666 77766544 221 233 999
Q ss_pred eeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
||+||.+++.++.||||++.. ++|+||++|.+.
T Consensus 98 ygvP~~~~~~~l~YNkd~~g~---~~P~Twdel~~~ 130 (371)
T 3thi_A 98 YGLPQILCTNLLFYRKGDLKI---GQVDNIYELYKK 130 (371)
T ss_dssp CCEEEEEECEEEEEETTCHHH---HTCCBHHHHHHH
T ss_pred EEecccCceeEEEEeCccccC---CCCCcHHHHHHH
Confidence 999999999999999997753 578999999874
No 19
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=99.15 E-value=5.1e-11 Score=96.83 Aligned_cols=86 Identities=12% Similarity=0.112 Sum_probs=68.4
Q ss_pred CcceEEEeChHHHHHHHHccc-cccCCCC-cccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 29 MAADLVSVGDSWLSFAIKERL-IEPTAGA-EDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gL-lepLD~s-~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
..+||+.+...++..+++.|+ ++||+.- ...++ +++.+... + ...+ +|+.||
T Consensus 60 ~~PDv~~~~~~~~~~~~~~g~~l~~L~~~~~~~~~-~~~~~~~~-----------------~------~~~~--dGk~y~ 113 (408)
T 2uvj_A 60 TEPDVMQTNWNWLPIFSKDGTGFYNLFSVKEQLDL-AQFDPKEL-----------------Q------QTTV--NGKLNG 113 (408)
T ss_dssp CCCSEEEECGGGHHHHCTTSCSBCCGGGGTTTSCG-GGSCHHHH-----------------H------TTEE--TTEECC
T ss_pred CCCcEEEechHHHHHHHhCCCceecchhhcccccc-ccCCHHHH-----------------h------ccEE--CCEEEE
Confidence 368999999999999999995 9999742 11244 55555433 2 1223 499999
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+|+...+.++.||||.|+++|+++|+||+++.+.
T Consensus 114 vP~~~~~~~l~YNkdl~~~aGl~~P~Twdel~~~ 147 (408)
T 2uvj_A 114 IPISVTARIFYFNDATWAKAGLEYPKTWDELLAA 147 (408)
T ss_dssp EEEEEEEEEEEEEHHHHHHHTCCCCSSHHHHHHH
T ss_pred eeccccceEEEEcHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999864
No 20
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=99.14 E-value=1.4e-11 Score=96.45 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=68.1
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+++|+|.+.++++ +++.+.+. . .+|+.|++|
T Consensus 85 ~~pDv~~~~~~~~~~~~~~g~l~~l~~~~~~~~-~~~~~~~~-----------------~-----------~~g~~y~~P 135 (351)
T 4edp_A 85 SQIDITYLAESFAEQGVEAGIFDKLDYSKIPNA-SEMNEKAK-----------------S-----------TVEAGYGPA 135 (351)
T ss_dssp CCCCEEEEEHHHHHHHHHHTCBCCCCGGGCGGG-GGBCTTTH-----------------H-----------HHHHTSSCE
T ss_pred CCCCEEEECcHHHHHHHHCCCcccCCchhCCCh-HHhhHHhh-----------------c-----------cCCCeeEEE
Confidence 589999999999999999999999998888888 88887765 2 127899999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|..++.+++|||+. + .+|+||++|+++
T Consensus 136 ~~~~~~~l~ynkd~-~----~~p~tw~el~~~ 162 (351)
T 4edp_A 136 YTLNSIGIVVDPSA-G----IEINSWEDLWKP 162 (351)
T ss_dssp EEEEEEEEEECGGG-C----CCCCSGGGGGCG
T ss_pred EEeeEEEEEEcCCC-C----CCCCCHHHHhCh
Confidence 99999999999999 3 578999999863
No 21
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=99.13 E-value=1e-10 Score=94.43 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=63.6
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+....+++-+++.+... .. ..+ +|+.||+|
T Consensus 58 ~~PDv~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~-----------------~~------~~~--dGk~ygvP 112 (381)
T 1elj_A 58 QGPDLFIWAHDWIGKFAEAGLLEPIDEYVTEDLLNEFAPMAQ-----------------DA------MQY--KGHYYALP 112 (381)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCTTTCCHHHHTTBCHHHH-----------------HH------TEE--TTEECEEE
T ss_pred CCCcEEEeCCccHHHHHHCCCeecChhhhhhhhhhhhcHHHH-----------------HH------eEE--CCEEEEec
Confidence 369999998889999999999999986432333123443322 21 123 39999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|.+.
T Consensus 113 ~~~~~~~l~YNkdlf~~----~P~Twdel~~~ 140 (381)
T 1elj_A 113 FAAETVAIIYNKEMVSE----PPKTFDEMKAI 140 (381)
T ss_dssp EEEEECEEEEETTTCSS----CCSSHHHHHHH
T ss_pred cccceeEEEEehHhhcc----CcccHHHHHHH
Confidence 99999999999999987 68999999863
No 22
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=99.09 E-value=1e-10 Score=95.06 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=65.2
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCccc----chhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQ----DWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIW 105 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~----n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~y 105 (142)
+|||+.+...++..+++.|+|+||+.- +. ++ +++.+... +... .+ +|+.|
T Consensus 62 P~Dv~~~~~~~~~~~~~~g~l~~L~~~-~~~~~~~~-~~~~~~~~-----------------~~~~-----~~--dGk~y 115 (409)
T 1eu8_A 62 DPDVFLMDVAWLGQFIASGWLEPLDDY-VQKDNYDL-SVFFQSVI-----------------NLAD-----KQ--GGKLY 115 (409)
T ss_dssp SEEEEEEETTTHHHHHHHTCBCCSHHH-HHHHTCCG-GGBCHHHH-----------------HHHT-----EE--TTEEC
T ss_pred CCCEEEEccccHHHHHHCCCeEechhh-ccccccch-hhhhHHHH-----------------HHhc-----cC--CCEEE
Confidence 469999988899999999999999842 11 23 34443322 2110 12 39999
Q ss_pred eeeeeeeeeEEEEechhhhhcCC-CCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNL-ALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~-~pp~SW~dL~~~ 140 (142)
|+|+...+.++.||||.|+++|+ .+|+||+++.+.
T Consensus 116 gvP~~~~~~~l~Ynkdlf~~aGl~~~P~Twdel~~~ 151 (409)
T 1eu8_A 116 ALPVYIDAGLLYYRKDLLEKYGYSKPPETWQELVEM 151 (409)
T ss_dssp CEEEEEEECEEEEEHHHHHHTTCCSCCSBHHHHHHH
T ss_pred EEeeeccceEEEEEHHHHHhcCCCCCCCCHHHHHHH
Confidence 99999999999999999999995 789999999764
No 23
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=99.09 E-value=4.1e-11 Score=97.03 Aligned_cols=87 Identities=14% Similarity=0.031 Sum_probs=66.7
Q ss_pred CcceEEEeC-hHHHHHHHHccccccCCCCcccch--hhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCee
Q 040772 29 MAADLVSVG-DSWLSFAIKERLIEPTAGAEDQDW--FKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIW 105 (142)
Q Consensus 29 ~~~DvV~~s-d~~l~~~i~~gLlepLD~s~l~n~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~y 105 (142)
..+||+... ..++..++++|+|+||+. .+.++ .+++.+... ... .++ +|+.|
T Consensus 63 ~~pDv~~~~~~~~~~~~~~~g~l~~L~~-~~~~~~~~~~~~~~~~-----------------~~~------~~~-dG~~y 117 (405)
T 3i3v_A 63 KEADVVMVNLYDKTLAWTDVGATVDVKP-YLDDWGLRGRVLPAAL-----------------ADW------TDD-EGRVR 117 (405)
T ss_dssp CCCSEEEECCSTTTTTTTTTTSSCCCHH-HHHHTTCTTTBCHHHH-----------------HHT------BCT-TSCBC
T ss_pred CCCcEEEecCCcchHHHHhCCCccccHH-HHhhcccccccCHHHH-----------------Hhh------ccC-CCcEE
Confidence 369999997 677799999999999983 12222 023444433 211 222 38999
Q ss_pred eeeeeeeeeEEEEechhhhhcCCC-CCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLA-LIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~-pp~SW~dL~~~ 140 (142)
|+|+..++.++.||||.|+++|++ +|+||++|.+.
T Consensus 118 ~~P~~~~~~~l~Ynkdl~~~~G~~~~P~Twdel~~~ 153 (405)
T 3i3v_A 118 AFPYFATNWPVAYNRALLDRAGVDAIPTTGDQLIAA 153 (405)
T ss_dssp SBCCEEEEECEEEEHHHHHHHTCCSCCCBHHHHHHH
T ss_pred EEeccCceEEEEEeHHHHHHcCCCCCCCCHHHHHHH
Confidence 999999999999999999999998 89999999864
No 24
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=99.07 E-value=1.8e-10 Score=93.81 Aligned_cols=87 Identities=9% Similarity=0.119 Sum_probs=63.6
Q ss_pred CcceEEE-eChHHHHHHHHccccccCCCCc-ccchh--hhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCe
Q 040772 29 MAADLVS-VGDSWLSFAIKERLIEPTAGAE-DQDWF--KCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEI 104 (142)
Q Consensus 29 ~~~DvV~-~sd~~l~~~i~~gLlepLD~s~-l~n~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ 104 (142)
..+||+. .+..++..+++.|+|+||+.-. ..+.. ..+.+.+. . . ...+|+.
T Consensus 85 ~~PDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~~~~-----------------~-~-------~~~dGk~ 139 (433)
T 4gqo_A 85 TAPTMSENINRSFAAQLADSKAIVPLNDVKGLDDVVKERNMSETMD-----------------S-W-------KFSDGNQ 139 (433)
T ss_dssp CCCSEEEEECHHHHHHHHHTTSBCCGGGSTTHHHHHHHTTCHHHHH-----------------H-T-------CCTTSCC
T ss_pred CCCeEEEEcCHHHHHHHHHCCCEEEChhhhcccchhhhhhhHHHHH-----------------H-h-------cccCCEE
Confidence 4689986 6888999999999999998421 11110 11111111 1 1 1235999
Q ss_pred eeeeeeeeeeEEEEechhhhhcCCC-CCCcHHHHhhh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNLA-LIEFDGKRYRI 140 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~~-pp~SW~dL~~~ 140 (142)
||+|+..++.++.||||.|+++|++ ||++|+++.+.
T Consensus 140 y~~P~~~~~~~l~Ynkdlf~~aGl~~pP~Twde~~~~ 176 (433)
T 4gqo_A 140 YVLPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEV 176 (433)
T ss_dssp CCEEEEEEECEEEECHHHHHHTTCSSCCCBHHHHHHH
T ss_pred EEEeccCceEEEEEehhhHHHcCCCCCCCCHHHHHHH
Confidence 9999999999999999999999986 69999999864
No 25
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=99.07 E-value=2.5e-10 Score=92.17 Aligned_cols=80 Identities=18% Similarity=0.253 Sum_probs=65.2
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+... ++ +++.+... ... .+ +|+.||+|
T Consensus 54 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~~--~~-~~~~~~~~-----------------~~~------~~--dG~~y~vP 105 (382)
T 2gha_A 54 QGADIIVGAHDWVGELAVNGLIEPIPNFS--DL-KNFYETAL-----------------NAF------SY--GGKLYGIP 105 (382)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCCT--TG-GGBCHHHH-----------------HHT------EE--TTEECCEE
T ss_pred CCCCEEEeCcccHHHHHhCCCcccCCchh--hh-hhcCHHHH-----------------Hhc------EE--CCEEEEEe
Confidence 36999999888999999999999998642 25 66666544 221 12 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 106 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 133 (382)
T 2gha_A 106 YAMEAIALIYNKDYVPE----PPKTMDELIEI 133 (382)
T ss_dssp EEEECCEEEEETTTCSS----CCSBHHHHHHH
T ss_pred eeccceEEEEehhhccC----CchhHHHHHHH
Confidence 99999999999999986 78999999874
No 26
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=99.03 E-value=1.3e-10 Score=94.74 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=65.8
Q ss_pred cceEEEeC-hHHH-HHHHHccccccCCCCccc--chhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCee
Q 040772 30 AADLVSVG-DSWL-SFAIKERLIEPTAGAEDQ--DWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIW 105 (142)
Q Consensus 30 ~~DvV~~s-d~~l-~~~i~~gLlepLD~s~l~--n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~y 105 (142)
.+||+... ..++ ..++++|+|+||+.- +. +|-+.+.+... +.. .+ +|+.|
T Consensus 59 ~pDv~~~~~~~~~~~~~~~~g~l~~L~~~-~~~~~~~~~~~~~~~-----------------~~~------~~--dG~~y 112 (400)
T 2b3f_A 59 PPDTFQVHAGMELIGTWVVANRMEDLSAL-FRQEGWLQAFPKGLI-----------------DLI------SY--KGGIW 112 (400)
T ss_dssp CCSEEEEETTHHHHHTTTTTTCBCCCHHH-HHHHTHHHHSCHHHH-----------------HHH------EE--TTEEC
T ss_pred CCCEEeecCCchHHHHHHhCCCCcCchHH-HHhCchhhhcCHhhh-----------------hhe------EE--CCEEE
Confidence 58999998 8888 999999999999841 11 34123333322 211 12 49999
Q ss_pred eeeeee-eeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRW-GTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~w-Gt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+|+.. ++.++.||||.|+++|+++|+||++|.+.
T Consensus 113 ~vP~~~~~~~~l~Ynkdl~~~aGl~~P~Twdel~~~ 148 (400)
T 2b3f_A 113 SVPVNIHRSNVMWYLPAKLKGWGVNPPRTWDKFLAT 148 (400)
T ss_dssp CEECCBEESCEEEECHHHHHHTTCCCCSSHHHHHHH
T ss_pred EEEEeeccCceEEEcHHHHHHcCCCCCCCHHHHHHH
Confidence 999999 89999999999999999999999999875
No 27
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=99.03 E-value=2.1e-10 Score=89.76 Aligned_cols=76 Identities=11% Similarity=0.084 Sum_probs=61.0
Q ss_pred CcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
..+||+.+++ .++..++++|+++|++.. .+ +++.+.++ +.+| |++
T Consensus 54 ~~pDv~~~~~~~~~~~~~~~g~l~~l~~~---~~-~~~~~~~~----------------------------~~~g--y~~ 99 (312)
T 1xvx_A 54 SPADVFLTENSPAMVLVDNAKLFAPLDAV---TQ-AQVAQEYR----------------------------PEHG--RWT 99 (312)
T ss_dssp CCCSEEEESSSHHHHHHHHTTCBCCCCHH---HH-HHBCGGGS----------------------------CSSS--SCE
T ss_pred CCCCEEEecchHHHHHHHhCCCcccCChH---HH-hhCCHHHC----------------------------CCCC--eEE
Confidence 5799999987 488999999999999853 34 55554433 2334 999
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+.+++++|+|||+.|++.| +|+||++|+++
T Consensus 100 P~~~~~~~l~ynk~~~~~~~--~P~tw~dl~~~ 130 (312)
T 1xvx_A 100 GIAARSTVFVYNPEKISEAE--LPKSIMDLAKP 130 (312)
T ss_dssp EEEEEEEEEEECTTTSCGGG--SCSSGGGGGSG
T ss_pred EEeccceEEEEEhhhccccC--CCCCHHHHhCH
Confidence 99999999999999998765 67999999874
No 28
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.01 E-value=3.2e-10 Score=92.69 Aligned_cols=81 Identities=9% Similarity=-0.055 Sum_probs=65.1
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.. ..+. +++.+... ... .+ +|+.||+|
T Consensus 55 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~-~~~~-~~~~~~~~-----------------~~~------~~--dG~~y~vP 107 (421)
T 1mh3_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DAV------RY--NGKLIAYP 107 (421)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HHT------EE--TTEECSEE
T ss_pred CCCCEEEeChHhHHHHHhCCCeecCCcc-hhhH-hhccHHhH-----------------hhE------EE--CCeEEEee
Confidence 4799999999999999999999999864 2233 66665543 211 22 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||+|.|++ +|+||++|.+.
T Consensus 108 ~~~~~~~l~Ynkdl~~~----~P~Twdel~~~ 135 (421)
T 1mh3_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (421)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eeccceEEEEehhhccC----CCCCHHHHHHH
Confidence 99999999999999986 68999999874
No 29
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=99.01 E-value=4.7e-10 Score=93.30 Aligned_cols=86 Identities=13% Similarity=0.028 Sum_probs=64.9
Q ss_pred CcceEEEe-ChHHHHHHHHccccccCCCCc-ccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 29 MAADLVSV-GDSWLSFAIKERLIEPTAGAE-DQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 29 ~~~DvV~~-sd~~l~~~i~~gLlepLD~s~-l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
..+||+.+ ...++..++++|+|+||+.-- -..+ .++.+... +. ..+ +|+.||
T Consensus 118 ~~PDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~-~~~~~~~~-----------------~~------~~~--dGk~Y~ 171 (456)
T 4g68_A 118 EAPDIFQTWAGGFSQPFVEAGKVLQLDSYLNDGTK-DQLLPGSF-----------------DN------VTY--NGKIYG 171 (456)
T ss_dssp CCCSEEEEETTTTTHHHHHTTCBCCCGGGSSSSGG-GGBCTTTT-----------------GG------GEE--TTEECC
T ss_pred CCCeEEEEcCchHHHHHHHcCCcccchhhhccchH-hhhCHHHH-----------------Hh------cEE--CCEEEE
Confidence 36899976 566788899999999998421 1122 33333322 11 123 499999
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+|+...+.++.||||.|+++|+.+|++|+++.+.
T Consensus 172 ~P~~~~~~~l~Ynkdl~~~aG~~~P~Twde~~~~ 205 (456)
T 4g68_A 172 IPFDQQASVLYINKELFDKYNVKVPTTFSELIDA 205 (456)
T ss_dssp EEEEEEEEEEEEEHHHHHHHTCCCCCBHHHHHHH
T ss_pred EEeeccceeeeccHHHHhhcCCcccCCHHHHHHH
Confidence 9999999999999999999999999999999864
No 30
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A*
Probab=99.00 E-value=9.3e-10 Score=90.05 Aligned_cols=79 Identities=10% Similarity=0.060 Sum_probs=64.0
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
.+||+..+..++..++++|+|+||+.+ .+ +++.+... +..+ +.+|+.||+|+
T Consensus 87 ~pDv~~~~~~~~~~~~~~g~l~~L~~~---~~-~~~~~~~~-----------------~~~~-------~~dG~~ygvP~ 138 (416)
T 2xd3_A 87 VPDVMMAPYDRVGSLGSDGQLSEVKLS---DG-AKTDDTTK-----------------SLVT-------AANGKVYGAPA 138 (416)
T ss_dssp CCSEEEEEHHHHHHHHHTTCBCCCCCC---GG-GCCCHHHH-----------------HHHB-------CTTCCBCCEEE
T ss_pred CCCEEEeCchhHHHHHHCCCeecCCHH---HH-hhCCHHHH-----------------Hhhe-------eeCCeEEEEee
Confidence 699999998999999999999999953 34 55655433 2211 13499999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
..++.++.||||.|++ +|+||++|.+.
T Consensus 139 ~~~~~~l~YNkdl~~~----~P~Twdel~~~ 165 (416)
T 2xd3_A 139 VIESLVMYYNKDLVKD----APKTFADLENL 165 (416)
T ss_dssp EEECCEEEEETTTCSS----CCCBHHHHHHH
T ss_pred ecCceEEEEEhhhhcC----CCCCHHHHHHH
Confidence 9999999999999986 68999999874
No 31
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=98.98 E-value=4.8e-10 Score=93.46 Aligned_cols=80 Identities=10% Similarity=-0.045 Sum_probs=64.3
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
++||+.++..++..+++.|+|+||+.. +... +++.+... + ...+ +|+.||+|+
T Consensus 56 ~pDv~~~~~~~~~~~~~~G~l~~L~~~-~~~~-~~~~~~~~-----------------~------~~~~--dGk~ygvP~ 108 (449)
T 3iot_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------D------AVRY--NGKLIAYPI 108 (449)
T ss_dssp SCSEEEEETTTHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------T------TSBS--SSCBCCEEE
T ss_pred CCCEEEeCchhHHHHHhCCCcccCCcc-hhhh-hccCHHHH-----------------H------hceE--CCEEEEecc
Confidence 689999998899999999999999963 2223 55665433 1 1233 499999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.+++.+++||||.|++ +|+||++|.+.
T Consensus 109 ~~~~~~l~YNkdl~~~----~P~Twdel~~~ 135 (449)
T 3iot_A 109 AVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (449)
T ss_dssp EEEECEEEEETTTCSS----CCSBGGGHHHH
T ss_pred ccceeEEEEehHHhcc----CCCCHHHHHHH
Confidence 9999999999999984 68999999875
No 32
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A*
Probab=98.98 E-value=8.2e-10 Score=89.78 Aligned_cols=79 Identities=11% Similarity=0.022 Sum_probs=62.7
Q ss_pred cceEEE-eChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 30 AADLVS-VGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 30 ~~DvV~-~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.+||+. ++..++..++++|+|+||+.. +.+.+++.+... .. ..+ +|+.||+|
T Consensus 85 ~pDv~~~~~~~~~~~~~~~g~l~~L~~~--~~~~~~~~~~~~-----------------~~------~~~--dG~~y~vP 137 (402)
T 1urs_A 85 GPDVVFGMPHDNNGVFAEEGLMAPVPSG--VLNTGLYAPNTI-----------------DA------IKV--NGTMYSVP 137 (402)
T ss_dssp CCSEEEEEEGGGHHHHHHTTCBCCCCTT--SCCGGGSCHHHH-----------------HT------TEE--TTEECSEE
T ss_pred CCcEEEecChhhHHHHHHCCCeecCCcc--hhhhhhcCHHhH-----------------hh------eEE--CCEEEEec
Confidence 589999 888899999999999999852 334255555433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYR 139 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~ 139 (142)
+..++.++.||||.|++ +|++|++|.+
T Consensus 138 ~~~~~~~l~YNkdl~~~----~P~Twdel~~ 164 (402)
T 1urs_A 138 VSVQVAAIYYNKKLVPQ----PPQTWAEFVK 164 (402)
T ss_dssp EEEEECEEEEETTTCSS----CCCSHHHHHH
T ss_pred ccCcccEEEEehhhhcc----CCCCHHHHHh
Confidence 99999999999999986 6899999975
No 33
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A
Probab=98.97 E-value=3.1e-10 Score=89.60 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=59.5
Q ss_pred CcceEEEe-ChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVSV-GDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~~-sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
..+||+.+ +..++..++++|+|+||+...++ +++++.++ +++|+.||+
T Consensus 68 ~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~~---~~~~~~~~----------------------------~~dG~~y~~ 116 (334)
T 2pt1_A 68 SPADVLLTVDLARLWRAEEDGIFQPVQSEILE---TNVPEYLR----------------------------SPDGMWFGF 116 (334)
T ss_dssp CCCCEEEEESHHHHHHHHHTTCBCCCCCHHHH---HHSCGGGB----------------------------CTTSSCEEE
T ss_pred CCCCEEEecCchHHHHHHhCCceeeCCHhHhh---ccCchheE----------------------------CCCCcEEee
Confidence 47999986 45799999999999999864322 12443322 356999999
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+ ++.+|+|||+.|+++ +|+||++|+++
T Consensus 117 p~--~~~~l~Ynkd~~~~~---~p~tw~el~~~ 144 (334)
T 2pt1_A 117 TK--RARVIMYNKGKVKPE---ELSTYEELADP 144 (334)
T ss_dssp EE--EEEEEEEETTTCCGG---GCCCSGGGGSG
T ss_pred cc--ccEEEEEeccccccc---CCCCHHHHhhh
Confidence 97 899999999999874 57999999875
No 34
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus}
Probab=98.97 E-value=7.5e-10 Score=89.54 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=63.8
Q ss_pred cceEEEe-ChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 30 AADLVSV-GDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 30 ~~DvV~~-sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
++||+.. +..++..++++|+|+||+....+++.+++.+... +.. .+ +|+.||+|
T Consensus 55 ~pDv~~~~~~~~~~~~~~~g~l~~L~~~~~~~~~~~~~~~~~-----------------~~~------~~--dG~~y~vP 109 (386)
T 2gh9_A 55 AADLVVTVPHDWVGEMAQAGVLEPVGKYVTQAYLADLQGVAV-----------------EAF------TF--GGRLMGLP 109 (386)
T ss_dssp SCSEEEEEEGGGHHHHHHTTCBCCCGGGSCHHHHHHBCHHHH-----------------HHT------EE--TTEECSEE
T ss_pred CCcEEEecCcchHHHHHhCCceecCchhhchhhHhhccHhhH-----------------hhE------EE--CCEEEEec
Confidence 6899988 7889999999999999985322233245554433 211 12 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+..++.++.||||.|++ +|+||+++.+.
T Consensus 110 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 137 (386)
T 2gh9_A 110 AFAESVALIYNKKYVKE----PPRTWEEFLAL 137 (386)
T ss_dssp EEEECCEEEEETTTCSS----CCSSHHHHHHH
T ss_pred cccceeEEEEehhhhcc----CCCCHHHHHHH
Confidence 99999999999999986 68999999875
No 35
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=98.97 E-value=3.8e-10 Score=90.52 Aligned_cols=88 Identities=15% Similarity=0.083 Sum_probs=64.9
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCc----c-cchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCC
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAE----D-QDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCE 103 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~----l-~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~ 103 (142)
.++||+.+...++..++++|+|+||+.-- . .+. ....+... . +. .. ..+|+
T Consensus 61 ~~PDv~~~~~~~~~~~~~~g~l~~l~d~~~~~~~~~~~-~~~~~~~~-----------------~-~~---~~--~~dGk 116 (419)
T 4aq4_A 61 NAPAILQVYEVGTATMMASKAIKPVYDVFKEAGIQFDE-SQFVPTVS-----------------G-YY---SD--SKTGH 116 (419)
T ss_dssp CCCSEEEEEGGGHHHHHTCTTEECHHHHHHHHTCCCCG-GGBCHHHH-----------------H-HT---BC--TTTCC
T ss_pred CCCeEEEECchhHHHHHHCCCccccHHHHhhcccccch-hhhhHHHH-----------------H-Hh---cc--CcCCE
Confidence 46899999999999999999999996310 0 011 22222222 1 10 12 23499
Q ss_pred eeeeeeeeeeeEEEEechhhhhcCCC---CCCcHHHHhhh
Q 040772 104 IWAAPYRWGTMVIAYQKSKFRKHNLA---LIEFDGKRYRI 140 (142)
Q Consensus 104 ~yavPY~wGt~gIaYnkd~~~~~g~~---pp~SW~dL~~~ 140 (142)
.||||+...+.++.||||.|+++|++ +|+||+++.+.
T Consensus 117 ~y~vP~~~~~~~l~Ynkdlf~~aGl~~~~~p~Twde~~~~ 156 (419)
T 4aq4_A 117 LLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADY 156 (419)
T ss_dssp BSSEEEEEECEEEEEEHHHHHHTTCCTTCCCSBHHHHHHH
T ss_pred EEeccccccceEEEEEhHHHHHcCCCCCCCCCCHHHHHHH
Confidence 99999999999999999999999985 48999999864
No 36
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=98.96 E-value=7.4e-10 Score=90.52 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=65.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+..+..++..+++.|+|+||+... .++ +++.+... +.. .+ +|+.||+|
T Consensus 93 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~~-~~~-~~~~~~~~-----------------~~~------~~--dG~~y~vP 145 (420)
T 4hw8_A 93 KGPDIFFLAHDNTGSAYLQGLAAEIKLSK-DEL-KGFNKQAL-----------------KAM------NY--DNKQLALP 145 (420)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCEECCCCCH-HHH-TTBCHHHH-----------------HHT------EE--TTEECEEE
T ss_pred CCCCEEEECcchHHHHHhcCCcccCCcch-hhh-hhcCHHHH-----------------Hhe------EE--CCEEEEee
Confidence 36999999999999999999999999542 234 66666544 221 12 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||+|.|+++ |+||++|++.
T Consensus 146 ~~~~~~~l~Ynkdl~~~~----P~Twdel~~~ 173 (420)
T 4hw8_A 146 AIVETTALFYNKKLVKNA----PQTLEEVEAN 173 (420)
T ss_dssp EEEECCEEEEETTTCCSC----CCBHHHHHHH
T ss_pred eeccceEEEEEhhhhhhC----CCCHHHHHHH
Confidence 999999999999999984 7999999874
No 37
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A*
Probab=98.96 E-value=8.4e-10 Score=89.33 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=63.9
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
.+||+.++..++..+++.|+|+||+.. ..+.+++.+... +.. .+ +|+.||+|+
T Consensus 74 ~pDv~~~~~~~~~~~~~~g~l~~L~~~--~~~~~~~~~~~~-----------------~~~------~~--dG~~y~~P~ 126 (397)
T 2zyo_A 74 GADLVTWPHDRLGEAVTKGLLQPIQVD--NSVKNQFDDVAM-----------------KAL------TY--GGKLYGLPK 126 (397)
T ss_dssp CCSEEEEEGGGHHHHHHTTCEECCCCC--HHHHTTBCHHHH-----------------HHT------EE--TTEECEEEE
T ss_pred CCcEEEeCchhHHHHHhCCCcccCCch--hhhHhhcChHhH-----------------hhe------EE--CCEEEEecc
Confidence 689999998999999999999999963 223255555433 211 12 499999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
..++.++.||||.|++ +|+||++|.+.
T Consensus 127 ~~~~~~l~Ynkdl~~~----~P~Twdel~~~ 153 (397)
T 2zyo_A 127 AIESVALIYNKKLMGQ----VPATYDELFQY 153 (397)
T ss_dssp EEECCEEEEETTTCSS----CCSBHHHHHHH
T ss_pred cccceEEEEehhhhcC----CCCCHHHHHHH
Confidence 9999999999999986 68999999874
No 38
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=98.95 E-value=3.8e-10 Score=97.17 Aligned_cols=80 Identities=10% Similarity=-0.080 Sum_probs=62.5
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+.... .. +.+.+... +. ..+ +|+.||+|
T Consensus 55 ~~PDv~~~~~~~~~~~~~~g~l~~l~~~~~-~~-~~~~~~~~-----------------~~------~~~--~Gk~ygvP 107 (694)
T 3dm0_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPAAA-FQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 107 (694)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCCHH-HH-HHBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCcEEEECchhHhHHhhCCCcccCCchhh-hh-hhcChhhh-----------------he------EEE--CCEEEEEE
Confidence 469999999999999999999999986421 12 33443322 11 223 39999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYR 139 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~ 139 (142)
|.+++.++.||||.|++ ||++|++|.+
T Consensus 108 ~~~~~~~l~YNkdl~~~----~P~Twdel~~ 134 (694)
T 3dm0_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPA 134 (694)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHH
T ss_pred EEeeeeEEEEchHHccc----CCCCHHHHHH
Confidence 99999999999999975 7899999975
No 39
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A*
Probab=98.94 E-value=6.6e-10 Score=92.95 Aligned_cols=81 Identities=9% Similarity=-0.076 Sum_probs=64.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.. .... +++.+... +. ..+ +|+.||+|
T Consensus 53 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~-~~~~-~~~~~~~~-----------------~~------~~~--dGk~y~vP 105 (461)
T 3csg_A 53 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 105 (461)
T ss_dssp CSCSEEEEEHHHHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HT------TEE--TTEECSEE
T ss_pred CCCcEEEECchhHHHHHHCCCcccCCcc-HHHH-hhccHHhH-----------------hh------eEE--CCEEEEee
Confidence 4799999998999999999999999864 2223 55555433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 106 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 133 (461)
T 3csg_A 106 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 133 (461)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred ccccceEEEEEhhhhcc----CCcCHHHHHHH
Confidence 99999999999999986 68999999874
No 40
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli}
Probab=98.92 E-value=8.6e-10 Score=91.56 Aligned_cols=81 Identities=9% Similarity=-0.055 Sum_probs=64.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+.. .... +++.+... +.. .+ +|+.||+|
T Consensus 55 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~-~~~~-~~~~~~~~-----------------~~~------~~--~G~~y~~P 107 (507)
T 3oai_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DAV------RY--NGKLIAYP 107 (507)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HHT------EE--TTEECSEE
T ss_pred CCCCEEEEcchhHHHHHHCCCcccCCch-hhhH-hhccHHHH-----------------hhe------EE--CCEEEEee
Confidence 3589999999999999999999999963 2223 55665543 211 23 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 108 ~~~~~~~l~ynkdl~~~----~P~Twdel~~~ 135 (507)
T 3oai_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (507)
T ss_dssp EEEECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred ccccceEEEEehHhhcc----CcCCHHHHHHH
Confidence 99999999999999984 78999999875
No 41
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=98.92 E-value=9e-10 Score=93.53 Aligned_cols=81 Identities=9% Similarity=-0.042 Sum_probs=64.2
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..+++.|+|+||+.. + .+.+++.+... .. ..+ +|+.||+|
T Consensus 69 ~~PDv~~~~~~~~~~~~~~G~l~~L~~~-~-~~~~~~~~~~~-----------------~~------~~~--dGk~YglP 121 (471)
T 3mq9_A 69 DGPDIIFWAHDRFGGYAQSGLLAEITPD-K-AFQDKLYPFTW-----------------DA------VRY--NGKLIAYP 121 (471)
T ss_dssp CSCSEEEEETTHHHHHHHTTCBCCCCCC-H-HHHTTBCHHHH-----------------GG------GEE--TTEECEEE
T ss_pred CCCeEEEECChhHHHHHHCCceecCCcc-h-HHHhhcCHHHH-----------------Hh------hEE--CCEEEEEe
Confidence 3589999999999999999999999963 2 23255555433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 122 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 149 (471)
T 3mq9_A 122 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 149 (471)
T ss_dssp EEEEECEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eeccceEEEEEhHHhcC----CCCCHHHHHHH
Confidence 99999999999999984 78999999875
No 42
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=98.92 E-value=8.9e-10 Score=94.22 Aligned_cols=81 Identities=10% Similarity=-0.047 Sum_probs=64.9
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..+++.|+|+||+.. +... +++.+... +.. .+ +|+.||+|
T Consensus 55 ~~PDv~~~~~~~~~~~~~~G~l~~L~~~-~~~~-~~~~~~~~-----------------~~~------~~--dGk~YgvP 107 (500)
T 3ob4_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPA-AAFQ-DKLYPFTW-----------------DAV------RY--NGKLIAYP 107 (500)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCEECCCCC-HHHH-HHBCHHHH-----------------HHT------EE--TTEECSEE
T ss_pred CCCeEEEECchhHHHHHHCCceecCCcc-HHHH-hhcCHHHH-----------------Hhe------EE--CCEEEEEe
Confidence 3699999999999999999999999964 2223 55665543 211 22 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 108 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 135 (500)
T 3ob4_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (500)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred cccCceEEEEEhHHhcC----CCCCHHHHHHH
Confidence 99999999999999984 78999999875
No 43
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp}
Probab=98.92 E-value=1.7e-09 Score=88.35 Aligned_cols=81 Identities=11% Similarity=-0.025 Sum_probs=64.1
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+++||+... ..+ +++.+... .. ..+ +|+.||+|
T Consensus 93 ~~PDv~~~~~~~~~~~~~~g~l~~l~~~~-~~~-~~~~~~~~-----------------~~------~~~--dGk~y~vP 145 (420)
T 4hs7_A 93 KGPDIFFLAHDNTGSAYLQGLAAEIKLSK-DEL-KGFNKQAL-----------------KA------MNY--DNKQLALP 145 (420)
T ss_dssp CCCSEEEEEGGGHHHHHHTTCEECCCCCH-HHH-TTBCHHHH-----------------HH------TEE--TTEECEEE
T ss_pred CCCcEEEeCchHHHHHHHcCCccccccCH-HhH-hhcCHHHH-----------------Hh------CeE--CCEEEEEe
Confidence 35799999999999999999999998543 223 55555433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+..++.++.||||.|++ +|++|+++.+.
T Consensus 146 ~~~~~~~l~Ynkdl~~~----~p~Twdel~~~ 173 (420)
T 4hs7_A 146 AIVETTALFYNKKLVKN----APQTLEEVEAN 173 (420)
T ss_dssp EEEECCEEEEETTTCCS----CCCBHHHHHHH
T ss_pred ccccceEEEEEcccccc----ccccchhhHHH
Confidence 99999999999999986 68999999764
No 44
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A
Probab=98.91 E-value=1.3e-09 Score=85.26 Aligned_cols=77 Identities=13% Similarity=-0.014 Sum_probs=58.7
Q ss_pred CcceEEEeC-hHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVSVG-DSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~~s-d~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
..+||+.+. ..++..++++|+|+|++...++ +++++.++ +++|+.|++
T Consensus 50 ~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~~---~~~~~~~~----------------------------~~~G~~~~~ 98 (320)
T 1q35_A 50 SPADVLLTVDISRVMEIVNADLAQKIDSKVLE---KNIPAQFR----------------------------DSNDQWFGL 98 (320)
T ss_dssp CCCCEEEESCHHHHHHHHHTTCBCCCCCHHHH---HHSCGGGB----------------------------CTTSSCEEE
T ss_pred CCCCEEEecChHHHHHHHHCCCcccCChhhhh---ccCchheE----------------------------CCCCeEEee
Confidence 479999975 4799999999999999864322 13443332 345887766
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
| +++.+|+|||+.++++ .+|+||++|+++
T Consensus 99 ~--~~~~~l~ynkd~~~~~--~~P~tw~el~~~ 127 (320)
T 1q35_A 99 T--TRARVIYTSKDRVGKL--PAGFDYLDLAKP 127 (320)
T ss_dssp E--EEEEEEEEETTTTCSC--CTTCCGGGGGSG
T ss_pred e--cceEEEEEehHHhhhc--CCCCCHHHHhhH
Confidence 6 5899999999999875 578999999875
No 45
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=98.90 E-value=1.3e-09 Score=91.67 Aligned_cols=81 Identities=9% Similarity=-0.038 Sum_probs=64.6
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+.. ..+.+++.+... +. ..+ +|+.||+|
T Consensus 55 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~--~~~~~~~~~~~~-----------------~~------~~~--dG~~y~~P 107 (581)
T 3o3u_N 55 DGPDIIFWAHDRFGGYAQSGLLAEITPD--KAFQDKLYPFTW-----------------DA------VRY--NGKLIAYP 107 (581)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC--HHHHTTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCcEEEECchhHHHHHhCCccccCCch--hhhhhccChHHH-----------------Hh------eEE--CCEEEEEe
Confidence 3689999999999999999999999963 223255555433 22 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 108 ~~~~~~~l~ynkdl~~~----~P~Twdel~~~ 135 (581)
T 3o3u_N 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (581)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eeccceEEEEEhHHhhc----CCCCHHHHHHH
Confidence 99999999999999984 78999999875
No 46
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=98.89 E-value=1.5e-09 Score=91.17 Aligned_cols=80 Identities=9% Similarity=-0.064 Sum_probs=64.0
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
++||+.++..++..++++|+|+||+.. .... +++.+... +. ..+ +|+.||+|+
T Consensus 58 ~pDv~~~~~~~~~~~~~~g~l~~L~~~-~~~~-~~~~~~~~-----------------~~------~~~--dGk~yglP~ 110 (475)
T 3n94_A 58 GPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYPI 110 (475)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HH------TEE--TTEECSEEE
T ss_pred CCcEEEECCccHHHHHHCCCcccCCcc-HhHH-hhcCHHhH-----------------hh------eEE--CCEEEEeee
Confidence 589999999999999999999999963 2223 55555433 21 123 499999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.+++.++.||||.|++ +|+||++|.+.
T Consensus 111 ~~~~~~l~YNkdl~~~----~P~Twdel~~~ 137 (475)
T 3n94_A 111 AVEALSLIYNKDLLPN----PPKTWEEIPAL 137 (475)
T ss_dssp EEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eccceEEEEehHHhcc----CCCCHHHHHHH
Confidence 9999999999999984 78999999875
No 47
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=98.89 E-value=1.3e-09 Score=92.44 Aligned_cols=81 Identities=9% Similarity=-0.055 Sum_probs=64.9
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.. .... +++.+... +.. .+ +|+.||+|
T Consensus 56 ~~PDV~~~~~~~~~~~~~~G~l~~L~~~-~~~~-~~~~~~~~-----------------~~~------~~--dGk~YgvP 108 (463)
T 2xz3_A 56 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DAV------RY--NGKLIAYP 108 (463)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-HTBCHHHH-----------------HHT------EE--TTEECSEE
T ss_pred CCCcEEEECchhHHHHHHCCceecCCcc-hhhh-hhCCHHHH-----------------Hhe------EE--CCEEEEEe
Confidence 4799999999999999999999999864 2223 56665533 211 22 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||+++++.
T Consensus 109 ~~~~~~~l~YNkdlf~~----~P~Twdel~~~ 136 (463)
T 2xz3_A 109 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 136 (463)
T ss_dssp EEEECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred eeccceEEEEEhHhhhC----CCCCHHHHHHH
Confidence 99999999999999986 68999999874
No 48
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli}
Probab=98.89 E-value=1.6e-09 Score=94.04 Aligned_cols=81 Identities=9% Similarity=-0.055 Sum_probs=65.1
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..+++.|+|+||+.. ..++ +++.+... ... .+ +|+.||||
T Consensus 55 ~~PDV~~~~~~~~~~~~~~G~L~~L~~~-~~~~-~~~~~~~~-----------------~~~------~~--dGk~YgvP 107 (494)
T 1y4c_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DAV------RY--NGKLIAYP 107 (494)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HHT------EE--TTEECSEE
T ss_pred CCCeEEEECcHhHHHHHHCCCeeCCCcc-hhhH-HhCCHHHH-----------------Hhe------EE--CCEEEEEe
Confidence 4799999999999999999999999864 2233 66665543 211 12 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||+|.|++ +|+||++|++.
T Consensus 108 ~~~~~~~l~YNkdlf~~----~P~TwdEl~~~ 135 (494)
T 1y4c_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (494)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eeCCeeEEEEEhHHhhC----CCCCHHHHHHH
Confidence 99999999999999986 68999999874
No 49
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A
Probab=98.89 E-value=1.1e-09 Score=96.87 Aligned_cols=81 Identities=9% Similarity=-0.073 Sum_probs=64.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+... ... +++.+... +. ..+ +|+.||||
T Consensus 55 ~~PDV~~~~~~~~~~~~~~G~L~pL~~~~-~~~-d~~~~~~~-----------------~~------~~~--dGk~YgvP 107 (637)
T 4dxb_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPDK-AFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 107 (637)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCCH-HHH-TTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCeEEEEChHHHHHHHHCCCEeeCCcCh-hhH-hhcCHHHH-----------------Hh------cEE--CCEEEEEE
Confidence 36899999999999999999999998642 233 55555544 22 123 39999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|.+++.++.||||.|++ +|+||+++.+.
T Consensus 108 ~~~~~~~l~YNkdlf~e----~P~TwdEl~~~ 135 (637)
T 4dxb_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (637)
T ss_dssp EEEECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred EecceEEEEEEcHHhcC----CCCCHHHHHHH
Confidence 99999999999999986 68999999864
No 50
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=98.88 E-value=1.1e-09 Score=92.92 Aligned_cols=81 Identities=9% Similarity=-0.076 Sum_probs=64.4
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.- .... +++.+... .. ..+ +|+.||||
T Consensus 55 ~~PDv~~~~~~~~~~~~~~G~l~~L~~~-~~~~-~~~~~~~~-----------------~~------~~~--dGk~YgvP 107 (465)
T 2zxt_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 107 (465)
T ss_dssp CCCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HT------TBS--SSSBCSEE
T ss_pred CCCeEEEECchhHHHHHHCCceecCCcc-hhhh-hhccHHhH-----------------hh------eEE--CCEEEEee
Confidence 3699999999999999999999999864 1223 55555433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 108 ~~~~~~~l~YNkdlf~~----~P~Twdel~~~ 135 (465)
T 2zxt_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (465)
T ss_dssp EEEECCEEECBTTTBSS----CCSSSTTSHHH
T ss_pred ccccceEEEEEhHhhcC----CCcCHHHHHHH
Confidence 99999999999999986 68999999874
No 51
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=98.88 E-value=1.4e-09 Score=92.39 Aligned_cols=87 Identities=16% Similarity=0.016 Sum_probs=62.2
Q ss_pred CcceEEEeChHHHHHHH-HccccccCCC--Ccccchhhhc---ChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCC
Q 040772 29 MAADLVSVGDSWLSFAI-KERLIEPTAG--AEDQDWFKCL---SHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRC 102 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i-~~gLlepLD~--s~l~n~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g 102 (142)
..+||+..+ .+...++ ++|+|+||+. +..+++ +.+ .+... ... .+.+|
T Consensus 94 ~~pDi~~~~-~~~~~~~~~~G~l~~L~~~i~~~~~~-~~~~~~~p~~~-----------------~~~-------~~~dG 147 (535)
T 3omb_A 94 DIADVNLNG-YGAVEAYQYPGMFEDLSKDLDKLPNV-KAFFKQKPDAK-----------------KMS-------TDSKG 147 (535)
T ss_dssp CCCSEEESS-CCTHHHHHSTTSBCCGGGGGGGCHHH-HHHHHHCHHHH-----------------HHH-------CCTTS
T ss_pred CCCcEEEec-CChhhhHhcCCcEEehHHHHHhChhH-HHHHHhCHHHH-----------------Hhc-------cCCCC
Confidence 389999984 3444555 7999999984 223444 333 12222 111 12459
Q ss_pred Ceeeeeeee------eeeEEEEechhhhhcCCCCCCcHHHHhhhh
Q 040772 103 EIWAAPYRW------GTMVIAYQKSKFRKHNLALIEFDGKRYRIL 141 (142)
Q Consensus 103 ~~yavPY~w------Gt~gIaYnkd~~~~~g~~pp~SW~dL~~~~ 141 (142)
+.||+|+.+ .+.++.||+|.|+++|+++|+||++|.+.+
T Consensus 148 ~~Y~lP~~~~~~~~~~~~~l~ynkdll~~~Gl~~P~Twdel~~~~ 192 (535)
T 3omb_A 148 RIYAIADGRGKAYSGTGQHMLINKAWLDKLGLQVPTTWDELENVL 192 (535)
T ss_dssp CCSSEEEECCGGGCSCSCEEEEEHHHHHHHTCCCCCBHHHHHHHH
T ss_pred CEEEeecccCcCccccccceEeeHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999994 569999999999999999999999998753
No 52
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli}
Probab=98.88 E-value=1.8e-09 Score=91.19 Aligned_cols=81 Identities=9% Similarity=-0.076 Sum_probs=64.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.- .... +++.+... .. ..+ +|+.||+|
T Consensus 70 ~~PDv~~~~~~~~~~~~~~G~l~~L~~~-~~~~-~~~~~~~~-----------------~~------~~~--dGk~ygvP 122 (477)
T 2vgq_A 70 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 122 (477)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCeEEEECcHHHHHHHHCCCeecCCcc-hhhH-hhCCHHHH-----------------Hh------eEE--CCEEEEEe
Confidence 4799999998999999999999999864 2223 55655433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|.+.
T Consensus 123 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 150 (477)
T 2vgq_A 123 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 150 (477)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred cccCceEEEEehHhhcc----CCCCHHHHHHH
Confidence 99999999999999986 68999999874
No 53
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli}
Probab=98.87 E-value=2e-09 Score=85.73 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=55.9
Q ss_pred CcceEEE-eChHHHHHHHHccccccC--CCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCee
Q 040772 29 MAADLVS-VGDSWLSFAIKERLIEPT--AGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIW 105 (142)
Q Consensus 29 ~~~DvV~-~sd~~l~~~i~~gLlepL--D~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~y 105 (142)
..+||+. .+..++..++++|+|+|| +.+. + + +++. +. +.|
T Consensus 77 ~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~~---~-~-~~~~-----------------------------~~---~~y 119 (330)
T 2qry_A 77 SKADVVLGLDNNLLDAASKTGLFAKSGVAADA---V-N-VPGG-----------------------------WN---NDT 119 (330)
T ss_dssp CCCSEEEEEEGGGHHHHHHHTCBCCCCCCGGG---C-C-CTTC-----------------------------CC---CSS
T ss_pred CCCCEEEEcChHHHHHHHHCCceecccccccc---c-c-CCHH-----------------------------Hh---cCe
Confidence 4699999 456899999999999999 4332 2 2 2221 11 349
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
++||.+++.+|+|||+.|++ +|+||++|+++
T Consensus 120 ~vP~~~~~~~l~YNkd~~~~----~P~Tw~dl~~~ 150 (330)
T 2qry_A 120 FVPFDYGYFAFVYDKNKLKN----PPQSLKELVES 150 (330)
T ss_dssp CEEEEEEEEEEEEETTTCSS----CCSSHHHHHHC
T ss_pred EEEEeccceEEEEehhhccC----CCCCHHHHHhH
Confidence 99999999999999999985 68999999875
No 54
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=98.86 E-value=1.4e-09 Score=91.36 Aligned_cols=81 Identities=9% Similarity=-0.076 Sum_probs=64.5
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.. .... +++.+... +. ..+ +|+.||+|
T Consensus 55 ~~pDv~~~~~~~~~~~~~~g~l~~L~~~-~~~~-~~~~~~~~-----------------~~------~~~--dGk~ygvP 107 (487)
T 1hsj_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 107 (487)
T ss_dssp CSCSEEEEETTTHHHHHHHTCBCCBCCC-HHHH-TTBCHHHH-----------------HH------TEE--TTEECEEE
T ss_pred CCCcEEEeCcHhHHHHHHCCCeecCCcc-hhhh-hhcCHHHH-----------------Hh------eeE--CCEEEEee
Confidence 4799999998999999999999999864 1223 56665533 21 122 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||+++.+.
T Consensus 108 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 135 (487)
T 1hsj_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (487)
T ss_dssp EEEECCEEEEEGGGCSS----CCSBSTTSHHH
T ss_pred eecceeEEEEEhhhhcC----CCCCHHHHHHH
Confidence 99999999999999986 68999998863
No 55
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A*
Probab=98.85 E-value=1.6e-09 Score=85.70 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=58.2
Q ss_pred CcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
..+||+.+++ .++..++++|+|+||+...+++ .+++.++ +++|+. +
T Consensus 78 ~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~~~~---~~~~~~~----------------------------~~~G~~--~ 124 (346)
T 2voz_A 78 SPGDILFTVDAGMLWRAEQAGLFQPVRSGKLNE---RIPENLR----------------------------HPDGLW--Y 124 (346)
T ss_dssp CCCSEEEEESHHHHHHHHHTTCBCCCCCHHHHH---HSCGGGB----------------------------CTTSSC--E
T ss_pred CCCCEEEecCHHHHHHHHhCCCeeecCchhhhh---cCCHhhC----------------------------CCCCcE--E
Confidence 4799999865 7999999999999998643221 2443333 344653 6
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+.+++++|+||||.|++ .+|+||++|+++
T Consensus 125 p~~~~~~~l~YNkd~~~~---~~P~tw~dl~~~ 154 (346)
T 2voz_A 125 GFTQRARVLYYSRDRVNP---ADLSTYEALADP 154 (346)
T ss_dssp EEEEEEEEEEEETTTCCG---GGCCCSGGGGSG
T ss_pred eeeccceEEEEehhhcCc---cCCCCHHHHhhH
Confidence 899999999999999987 368999999864
No 56
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=98.85 E-value=2.3e-09 Score=91.32 Aligned_cols=81 Identities=9% Similarity=-0.076 Sum_probs=64.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
..+||+.++..++..++++|+|+||+.. ...+ +++.+... +. ..+ +|+.||+|
T Consensus 56 ~~PDv~~~~~~~~~~~~~~G~l~~L~~~-~~~~-~~~~~~~~-----------------~~------~~~--dGk~YgvP 108 (509)
T 1r6z_P 56 DGPDIIFWAHDRFGGYAQSGLLAEITPD-KAFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 108 (509)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCcEEEECcHhHHHHHHCCceecCCcc-hhhh-hhCCHHHH-----------------hh------eEE--CCEEEEec
Confidence 3699999999999999999999999864 2223 56665433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|.+.
T Consensus 109 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 136 (509)
T 1r6z_P 109 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 136 (509)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred cccCceEEEEEhHhhcC----CCCCHHHHHHH
Confidence 99999999999999986 68999999874
No 57
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A
Probab=98.84 E-value=2.7e-09 Score=87.75 Aligned_cols=91 Identities=15% Similarity=0.107 Sum_probs=62.6
Q ss_pred CcceEEEeCh--HHHHHHHHccccccCCC--Cc-ccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCC
Q 040772 29 MAADLVSVGD--SWLSFAIKERLIEPTAG--AE-DQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCE 103 (142)
Q Consensus 29 ~~~DvV~~sd--~~l~~~i~~gLlepLD~--s~-l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~ 103 (142)
..+||+..+. ..+..++++|+|.||+. ++ -||+ +.+...+- ..... . ...+|+
T Consensus 66 ~~PDi~~~~~~~~~~~~~~~~G~l~dL~d~i~~~~p~~-k~~~~~~~-----------------~~~~~--~--~~~dGk 123 (490)
T 3a09_A 66 QLPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNL-KAFFKTHP-----------------EVQRA--I--TAPDGN 123 (490)
T ss_dssp SCCSEEEETTCHHHHHHHHHHTSBCCCHHHHHHHCHHH-HHHHHHCH-----------------HHHHH--H--BCTTSC
T ss_pred CcCeEEEECCchHHHHHHHHCCCEEECHHHHHhhChhH-HHHHhhCH-----------------HHHHH--h--cccCCe
Confidence 4789998863 57889999999999973 11 1333 22111100 11110 0 124599
Q ss_pred eeeeeee---eeeeEEEEechhhhhcCCCCCCcHHHHhhhh
Q 040772 104 IWAAPYR---WGTMVIAYQKSKFRKHNLALIEFDGKRYRIL 141 (142)
Q Consensus 104 ~yavPY~---wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~~ 141 (142)
+||+|+. +.+.++.||||.++++|+.+|++|+++.+.+
T Consensus 124 iY~lP~~~~~~~~~~~~ynkd~l~k~Gl~~P~T~de~~~~~ 164 (490)
T 3a09_A 124 IYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVL 164 (490)
T ss_dssp BCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHHHH
T ss_pred EEEEEeecCCCcceEEEEEHHHHHHcCCCCCCchhHHHHHH
Confidence 9999994 4577899999999999999999999998653
No 58
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=98.83 E-value=3.1e-09 Score=90.99 Aligned_cols=80 Identities=10% Similarity=-0.023 Sum_probs=64.0
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
++||+.++..++..++++|+|+||+.. + ++.+++.+... +. ..+ +|+.||+|+
T Consensus 57 ~pDv~~~~~~~~~~~~~~G~l~~L~~~-~-~~~~~~~~~~~-----------------~~------~~~--dGk~YglP~ 109 (523)
T 3py7_A 57 GPDIIFWAHDRFGGYAQSGLLAEITPA-A-AFQDKLYPFTW-----------------DA------VRY--NGKLIAYPI 109 (523)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCC-H-HHHTTBCHHHH-----------------HH------TEE--TTEECSEEE
T ss_pred CCcEEEECcHhHHHHHHCCCeecCCcc-h-hhhhhcCHHHH-----------------hh------eEE--CCEEEEEee
Confidence 589999999999999999999999963 1 23255555433 21 122 499999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.+++.++.||||.|++ +|+||+++++.
T Consensus 110 ~~~~~~l~YNkdl~~~----~P~Twdel~~~ 136 (523)
T 3py7_A 110 AVEALSLIYNKDLLPN----PPKTWEEIPAL 136 (523)
T ss_dssp EEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eccceEEEEEhHHhhc----CCCCHHHHHHH
Confidence 9999999999999984 78999999875
No 59
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=98.83 E-value=3e-09 Score=96.09 Aligned_cols=81 Identities=9% Similarity=-0.065 Sum_probs=63.9
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+... ... +++.+... +. ..+| |+.||+|
T Consensus 56 ~~PDV~~~~~~~~~~~a~~G~L~~L~~~~-~~~-d~~~~~~~-----------------~~------~~~d--Gk~YgvP 108 (715)
T 4h1g_A 56 DGPDIIFWAHDRFGGYAQSGLLAEITPDK-AFQ-DKLYPFTW-----------------DA------VRYN--GKLIAYP 108 (715)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCCH-HHH-TTBCHHHH-----------------HH------TEET--TEECSEE
T ss_pred CCCeEEEEChHHHHHHHHCCCEeeCCcCh-hhh-hhcCHHHH-----------------Hh------cEEC--CEEEEEE
Confidence 36899999999999999999999998642 222 44554433 21 1233 9999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|.+.
T Consensus 109 ~~~~~~~l~YNkdlf~e----~P~TWdEl~~~ 136 (715)
T 4h1g_A 109 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 136 (715)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred EecceEEEEEEhHHhcC----CCCCHHHHHHH
Confidence 99999999999999986 68999999864
No 60
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=98.83 E-value=2.8e-09 Score=83.06 Aligned_cols=78 Identities=12% Similarity=0.055 Sum_probs=60.6
Q ss_pred CcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
..+||+.+++ .++..++++|+|+|++... + +++.+.++ . .+.+| |++
T Consensus 49 ~~pDv~~~~~~~~~~~~~~~g~l~~l~~~~---~-~~~~~~~~-----------------~---------~~~~g--~~~ 96 (309)
T 1nnf_A 49 TPADVFYTEQTATFADLSEAGLLAPISEQT---I-QQTAQKGV-----------------P---------LAPKK--DWI 96 (309)
T ss_dssp CCCSEEEESCGGGHHHHHHTTCBCCCCHHH---H-HTTCCTTC-----------------C---------CCTTS--CCE
T ss_pred CCCCEEEecchhHHHHHHHCCCcccCCHHH---h-hhcchhhc-----------------c---------cCCCC--eEE
Confidence 5799999986 6999999999999998532 3 44444433 1 13335 789
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|+.+++++++|||+.|++. .+|+||++|+++
T Consensus 97 P~~~~~~~l~YNk~~~~~~--~~P~tw~dl~~~ 127 (309)
T 1nnf_A 97 ALSGRSRVVVYDHTKLSEK--DMEKSVLDYATP 127 (309)
T ss_dssp EEEEEEEEEEEETTTCCGG--GSCSSGGGGGSG
T ss_pred EeeeeEEEEEEehhhcccc--CCCCCHHHHhch
Confidence 9999999999999999875 378999999863
No 61
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ...
Probab=98.81 E-value=3.4e-09 Score=91.19 Aligned_cols=81 Identities=10% Similarity=-0.068 Sum_probs=63.4
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+.. +... .++.+... +. ..+ +|+.||+|
T Consensus 59 ~~PDV~~~~~~~~~~~~~~G~L~~L~d~-~~~~-d~~~~~~~-----------------~~------~~~--dGk~YgvP 111 (487)
T 4exk_A 59 DGPDIIFWAHDRFGGYAQSGLLAEITPA-AAFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 111 (487)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC-HHHH-TTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCeEEEECcHHHHHHHHCCCcccCCcc-hhhh-hhcCHHHH-----------------Hh------ceE--CCEEEecC
Confidence 4689999999999999999999999853 2222 44444433 21 123 39999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|++|+++.+.
T Consensus 112 ~~~~~~~l~YNkdlf~e----~P~Twdel~~~ 139 (487)
T 4exk_A 112 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 139 (487)
T ss_dssp EEEECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred eEeccEEEEEEeecccc----CCchHHHHHHH
Confidence 99999999999999986 68999998764
No 62
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A*
Probab=98.81 E-value=4e-09 Score=90.75 Aligned_cols=81 Identities=9% Similarity=-0.038 Sum_probs=64.3
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+.. ..+.+++.+... +. ..+ +|+.||+|
T Consensus 57 ~~PDv~~~~~~~~~~~~~~G~l~~L~~~--~~~~~~~~~~~~-----------------~~------~~~--dGk~YglP 109 (539)
T 3h3g_A 57 DGPDIIFWAHDRFGGYAQSGLLAEITPD--KAFQDKLYPFTW-----------------DA------VRY--NGKLIAYP 109 (539)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC--HHHHTTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCeEEEECchhHHHHHHCCceecCCcc--HHHHhhcCHHHH-----------------Hh------ceE--CCEEEEEe
Confidence 3699999999999999999999999963 223255555433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|.+.
T Consensus 110 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 137 (539)
T 3h3g_A 110 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 137 (539)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eecCceEEEEEhHHhcC----CCCCHHHHHHH
Confidence 99999999999999984 78999999875
No 63
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=98.81 E-value=3.4e-09 Score=93.06 Aligned_cols=81 Identities=9% Similarity=-0.073 Sum_probs=63.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+... ... +++.+... +. ..+ +|+.||||
T Consensus 69 ~~PDV~~~~~~~~~~~~~~G~L~~L~~~~-~~~-d~~~~~~~-----------------~~------~~~--dGk~YgvP 121 (602)
T 4b3n_A 69 DGPDIIFWAHDRFGGYAQSGLLAEITPDK-AFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 121 (602)
T ss_dssp CSCSEEEEEGGGHHHHHHHTCBCCCCCCH-HHH-HHBCHHHH-----------------HH------TEE--TTEECEEE
T ss_pred CCCeEEEEChHHHHHHHHCCCeeeCCcch-hhh-hhcCHHHH-----------------hh------cEE--CCEEEEEE
Confidence 36899999999999999999999998642 222 44554433 22 123 39999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||+++.+.
T Consensus 122 ~~~~~~~l~YNkdlf~e----~P~TwdEl~~~ 149 (602)
T 4b3n_A 122 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 149 (602)
T ss_dssp EEEECCEEEEETTTCSS----CCSBTTHHHHH
T ss_pred EecceEEEEEEhHHhcC----CCCCHHHHHHH
Confidence 99999999999999986 68999999864
No 64
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=98.81 E-value=4.3e-09 Score=90.46 Aligned_cols=81 Identities=9% Similarity=-0.038 Sum_probs=64.6
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+.. .++.+++.+... +. ..+ +|+.||+|
T Consensus 56 ~~PDV~~~~~~~~~~~~~~G~l~~L~~~--~~~~~~~~~~~~-----------------~~------~~~--dGk~YglP 108 (522)
T 3mp6_A 56 DGPDIIFWAHDRFGGYAQSGLLAEITPD--KAFQDKLYPFTW-----------------DA------VRY--NGKLIAYP 108 (522)
T ss_dssp CSCSEEEEEGGGHHHHHHTTCBCCCCCC--HHHHHTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCeEEEECChhHHHHHhCCCcccCCcc--hhhhhhcChHhH-----------------hh------EEE--CCEEEEEe
Confidence 3589999999999999999999999963 223255555433 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||++|++.
T Consensus 109 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 136 (522)
T 3mp6_A 109 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 136 (522)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred eeccceEEEEEhHhhcc----CCcCHHHHHHH
Confidence 99999999999999984 78999999875
No 65
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=98.80 E-value=1.4e-09 Score=89.15 Aligned_cols=84 Identities=14% Similarity=0.092 Sum_probs=60.9
Q ss_pred CcceEEEeChHHH-HHHHHccccccCCCCccc--chhhh-cChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCe
Q 040772 29 MAADLVSVGDSWL-SFAIKERLIEPTAGAEDQ--DWFKC-LSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEI 104 (142)
Q Consensus 29 ~~~DvV~~sd~~l-~~~i~~gLlepLD~s~l~--n~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ 104 (142)
..+||+.++..++ ..++++|+|+||+.- +. ++ .. +...+. . .. .+|+.
T Consensus 98 ~~pDv~~~~~~~~~~~~~~~g~l~~L~~~-~~~~~~-~~~~~~~~~------------------~------~~--~dGk~ 149 (430)
T 2w7y_A 98 EFPDVIDLAGNAVSLAAIEQKLVLDLKPY-IDSNKL-EKNVGLNYK------------------Q------NQ--KDGKI 149 (430)
T ss_dssp CCCSEEECTTCCCCHHHHHTTCBCCCHHH-HHHTTC-HHHHTTHHH------------------H------TE--ETTEE
T ss_pred CCCcEEEeCCchHHHHHHhCCCccCchHh-hccccH-hhhhhHhhh------------------c------cC--cCCeE
Confidence 3789999876555 446899999999731 11 22 11 111111 0 11 24999
Q ss_pred eeeeeeeeeeEEEEechhhhhcCCCCC---CcHHHHhhh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNLALI---EFDGKRYRI 140 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~~pp---~SW~dL~~~ 140 (142)
||+|+..++.++.||||.|+++|+++| +||+++.+.
T Consensus 150 ygvP~~~~~~~l~YNkdl~~~aGl~~P~~~~Twdel~~~ 188 (430)
T 2w7y_A 150 YTVHEQLFTMGLWYNKDIFAKAGAKTPDQWNTWDDFTQA 188 (430)
T ss_dssp CCBCSBCEEECEEEEHHHHHHHTCCCGGGCCSHHHHHHH
T ss_pred EEeeccccceEEEEeHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 999999999999999999999999876 899999875
No 66
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12}
Probab=98.79 E-value=5.1e-09 Score=92.53 Aligned_cols=81 Identities=9% Similarity=-0.073 Sum_probs=64.7
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+... ... +++.+... +. ..+ +|+.||+|
T Consensus 55 ~~PDV~~~~~~~~~~~~~~G~l~~L~~~~-~~~-~~~~~~~~-----------------~~------~~~--dGk~YglP 107 (658)
T 3f5f_A 55 DGPDIIFWAHDRFGGYAQSGLLAEITPDK-AFQ-DKLYPFTW-----------------DA------VRY--NGKLIAYP 107 (658)
T ss_dssp CSCSEEEEEHHHHHHHHHTTCBCCCCCCH-HHH-TTBCHHHH-----------------HH------TEE--TTEECSEE
T ss_pred CCCcEEEECcHhHHHHHHCCCEecCCcch-hhH-hhcCHHHH-----------------HH------hEE--CCEEEEEe
Confidence 35899999999999999999999999632 223 55555543 21 123 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||+++++.
T Consensus 108 ~~~~~~~l~YNkdl~~~----~P~Twdel~~~ 135 (658)
T 3f5f_A 108 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (658)
T ss_dssp EEEECCEEEEETTTCSS----CCSBGGGHHHH
T ss_pred cccCeEEEEEEhHHhhC----CCCCHHHHHHH
Confidence 99999999999999984 78999999875
No 67
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A
Probab=98.79 E-value=5.8e-09 Score=88.31 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=64.6
Q ss_pred CcceEEE-eC-hHHHHHHHHccccccCCCC--c-ccchhhhcC---hhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCC
Q 040772 29 MAADLVS-VG-DSWLSFAIKERLIEPTAGA--E-DQDWFKCLS---HKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDP 100 (142)
Q Consensus 29 ~~~DvV~-~s-d~~l~~~i~~gLlepLD~s--~-l~n~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp 100 (142)
..+||+. .+ ...+..++++|+|.||+.- + -+|+ +.+- +... ... ...
T Consensus 66 ~~PDi~~~~~~~~~~~~~~~~G~l~~L~d~i~~~~~~~-~~~~~~~p~~~-----------------~~~-------~~~ 120 (502)
T 3vlv_A 66 QLPDIVGGDNLKDKFIRYGMEGAFIPLNKLIDQNAPNL-KAFFKTHPEVQ-----------------RAI-------TAP 120 (502)
T ss_dssp CCCSEEEESSCHHHHHHHHHHTSBCCCHHHHHHHCHHH-HHHHHHCHHHH-----------------HHH-------BCT
T ss_pred CCCeEEEecCCcHHHHHHHHCCCEEEcHHHHHHhChHH-HHHHHHChHHH-----------------Hhc-------cCC
Confidence 4799999 77 7889999999999999721 1 1333 2211 1111 111 124
Q ss_pred CCCeeeeee---eeeeeEEEEechhhhhcCCCCCCcHHHHhhhh
Q 040772 101 RCEIWAAPY---RWGTMVIAYQKSKFRKHNLALIEFDGKRYRIL 141 (142)
Q Consensus 101 ~g~~yavPY---~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~~ 141 (142)
+|++||+|+ ...+.++.||+|.++++|+.+|+||+++.+.+
T Consensus 121 dGk~Y~lP~~~~~~~~~~~~ynkd~l~~~Gl~~P~T~del~~~~ 164 (502)
T 3vlv_A 121 DGNIYYLPYVPDGLVSRGYFIRQDWLDKLHLKTPQTVDELYTVL 164 (502)
T ss_dssp TSCBCCEEEECCCSCCEEEEEEHHHHHHTTCCCCCBHHHHHHHH
T ss_pred CCCEEEeccccCCCcCcceEEeHHHHHHcCCCCCCCHHHHHHHH
Confidence 599999999 56889999999999999999999999998653
No 68
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli}
Probab=98.75 E-value=5e-09 Score=91.88 Aligned_cols=80 Identities=10% Similarity=-0.021 Sum_probs=64.4
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
++||+.++..++..++++|+++||+... .+.+++.+... +. ..+ +|+.||+|+
T Consensus 56 ~PDV~~~~~~~~~~~~~~G~l~pL~~~~--~~~~~~~~~~~-----------------~~------~~~--dGk~YgvP~ 108 (568)
T 3h4z_A 56 GPDIIFWAHDRFGGYAQSGLLAEITPAA--AFQDKLYPFTW-----------------DA------VRY--NGKLIAYPI 108 (568)
T ss_dssp SCSEEEEEHHHHHHHHHHTCBCCCCCCH--HHHTTBCTHHH-----------------HH------TEE--TTEECSEEE
T ss_pred CCeEEEECcHhHHHHHHCCCEEeCCcch--hhhhhcCHHHH-----------------hh------eEE--CCEEEEEEe
Confidence 5899999999999999999999999632 23256665544 21 123 499999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.+++.++.||||.|++ +|+||+++.+.
T Consensus 109 ~~~~~~l~YNkdl~~~----~P~Twdel~~~ 135 (568)
T 3h4z_A 109 AVEALSLIYNKDLLPN----PPKTWEEIPAL 135 (568)
T ss_dssp EEECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred ccCceEEEEEhHHhhC----CCCCHHHHHHH
Confidence 9999999999999984 78999999875
No 69
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli}
Probab=98.75 E-value=6.1e-09 Score=93.77 Aligned_cols=80 Identities=9% Similarity=-0.007 Sum_probs=64.2
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
++||+.++..++..++++|+|+||+... .+.+++.+... +.. .+ +|+.||+|+
T Consensus 92 ~PDV~~~~~~~~~~~~~~G~L~pLdd~~--~~~~~~~~~~~-----------------~~~------~~--dGk~YglP~ 144 (653)
T 3osr_A 92 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTW-----------------DAV------RY--NGKLIAYPI 144 (653)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHH-----------------HHT------EE--TTEECSEEE
T ss_pred CCEEEEECcHHHHHHHHCCCEEECCCcH--HHHhhCCHHHH-----------------Hhe------EE--CCEEEEEEe
Confidence 5899999999999999999999999642 33255555433 211 12 499999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.+++.+|.||||.|++ +|+||++|++.
T Consensus 145 ~~~~~~l~YNkdlfee----~P~TWdEL~~~ 171 (653)
T 3osr_A 145 AVEALSLIYNKDLLPN----PPKTWEEIPAL 171 (653)
T ss_dssp EEECCEEEEETTTCSS----CCSBSTTHHHH
T ss_pred cCceeEEEEEhHHhhC----CCCCHHHHHHH
Confidence 9999999999999984 78999999875
No 70
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=98.75 E-value=7.5e-09 Score=80.39 Aligned_cols=77 Identities=18% Similarity=0.140 Sum_probs=59.5
Q ss_pred CCcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 28 YMAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 28 ~~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
...+||++.++ .++..++++|+++|++...+. .++.+.++ |++|. .
T Consensus 50 ~~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~~~~---~~~~~~~~----------------------------~~~g~--~ 96 (322)
T 3e13_X 50 NSPADIFITADISNLTEAKNLGLLSPVSSKYLE---EFIPAHLR----------------------------DKDKE--W 96 (322)
T ss_dssp GCCCCEEEESCHHHHHHHHHTTCEECCCCHHHH---HHSCGGGB----------------------------CTTSS--C
T ss_pred CCCCCEEEecCcHHHHHHHHCCCcccCChhHhh---hhchhhhC----------------------------CCCCc--E
Confidence 35799999965 579999999999999965332 23555444 34454 3
Q ss_pred eeeeeeeeEEEEechh-hhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSK-FRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~-~~~~g~~pp~SW~dL~~~ 140 (142)
+|+.+++++|+||++. |++ .+|+||++|+++
T Consensus 97 ~~~~~~~~~l~yn~~~~~~~---~~p~tw~dl~~~ 128 (322)
T 3e13_X 97 FAITKRARIIAYNKNTNIDI---SKMKNYEDLAKA 128 (322)
T ss_dssp EEEEEEEEEEEEETTSCCCC---TTCCSGGGGGSG
T ss_pred EEeeceeEEEEECCccccCC---CCCCCHHHHhhh
Confidence 7888999999999999 986 478999999875
No 71
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli}
Probab=98.73 E-value=8.4e-09 Score=92.89 Aligned_cols=81 Identities=9% Similarity=-0.023 Sum_probs=64.6
Q ss_pred cceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeeee
Q 040772 30 AADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAPY 109 (142)
Q Consensus 30 ~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavPY 109 (142)
.+||+.++..++..++++|+|+||+... .+.+++.+... +.. .+ +|+.||+|+
T Consensus 92 ~PDV~~~~~~~~~~~~~~G~l~pLd~~~--~~~~~~~~~~~-----------------~~~------~~--dGk~YgvP~ 144 (661)
T 3osq_A 92 GPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTW-----------------DAV------RY--NGKLIAYPI 144 (661)
T ss_dssp SCSEEEEEGGGHHHHHHTTCBCCCCCCH--HHHTTBCHHHH-----------------HHT------EE--TTEECSEEE
T ss_pred CCeEEEECcHHHHHHHHCCCEEeCCcch--hhhhhcCHHHH-----------------hhc------eE--CCEEEEEEE
Confidence 5899999999999999999999999743 23245555433 211 23 389999999
Q ss_pred eeeeeEEEEechhhhhcCCCCCCcHHHHhhhh
Q 040772 110 RWGTMVIAYQKSKFRKHNLALIEFDGKRYRIL 141 (142)
Q Consensus 110 ~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~~ 141 (142)
.+++.+++||+|.+++ +|+||+++++..
T Consensus 145 ~~~~~~l~YNkdl~~~----~P~Twdel~~~~ 172 (661)
T 3osq_A 145 AVEALSLIYNKDLLPN----PPKTWEEIPALD 172 (661)
T ss_dssp EEECCEEEEETTTCSS----CCSBSTTHHHHH
T ss_pred ecCeEEEEEEhHHhcC----CCCCHHHHHHHH
Confidence 9999999999999984 789999999753
No 72
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A
Probab=98.68 E-value=9.6e-09 Score=80.48 Aligned_cols=72 Identities=10% Similarity=0.003 Sum_probs=55.9
Q ss_pred CcceEEEe-ChHHHHHHHHccccccCCCCcccchhh-hcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 29 MAADLVSV-GDSWLSFAIKERLIEPTAGAEDQDWFK-CLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 29 ~~~DvV~~-sd~~l~~~i~~gLlepLD~s~l~n~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
..+||+.. +..++..++++|+|+||+... + . .+++.++ +++| |+
T Consensus 54 ~~~Dv~~~~~~~~~~~~~~~g~l~~l~~~~---~-~~~~~~~~~----------------------------~~~g--~~ 99 (323)
T 1y9u_A 54 SPADVLMTVDIGNLIDLVNGGVTQKIQSQT---L-DSVVPANLR----------------------------GAEG--SW 99 (323)
T ss_dssp CCCCEEEEESHHHHHHHHHTTCEECCCCHH---H-HHHSCGGGB----------------------------CGGG--SC
T ss_pred CCCCEEEecChHHHHHHHHCCCeeeCChhh---h-hhhccHhhC----------------------------CCCC--eE
Confidence 46899987 558899999999999998642 3 2 3443322 2335 89
Q ss_pred eeeeeeeeEEEEech-hhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKS-KFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd-~~~~~g~~pp~SW~dL~~~ 140 (142)
+|+.+++.+|+|||+ .|++ | ||++|+++
T Consensus 100 ~p~~~~~~~l~yNkd~~~~~-----P-tw~dl~~~ 128 (323)
T 1y9u_A 100 YALSLRDRVLYVEKDLKLDS-----F-RYGDLADP 128 (323)
T ss_dssp EEEEEEEEEEEEETTCCCCC-----C-BGGGGGCG
T ss_pred EEEecceeEEEEcCccccCC-----C-CHHHHhhH
Confidence 999999999999999 9975 4 99999874
No 73
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=98.68 E-value=1.4e-08 Score=92.15 Aligned_cols=81 Identities=9% Similarity=-0.040 Sum_probs=62.5
Q ss_pred CcceEEEeChHHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeeee
Q 040772 29 MAADLVSVGDSWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAAP 108 (142)
Q Consensus 29 ~~~DvV~~sd~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yavP 108 (142)
.++||+.++..++..++++|+|+||+... .+.+++.+... +. ..+ +|+.||+|
T Consensus 59 ~~PDVv~~~~~~~~~~~~~G~L~~L~~~~--~~~~~~~~~~~-----------------~~------~~~--dGk~YgvP 111 (805)
T 2nvu_B 59 DGPDIIFWAHDRFGGYAQSGLLAEITPDK--AFQDKLYPFTW-----------------DA------VRY--NGKLIAYP 111 (805)
T ss_dssp CSCSEEEEEHHHHHHHHHTTCBCCCCCCH--HHHTSBCTTHH-----------------HH------TEE--TTEECEEE
T ss_pred CCCeEEEECchhHHHHHHCCceecCCcch--hhHhhcCHHHH-----------------hh------eEE--CCEEEEEe
Confidence 36999999999999999999999998642 23134444322 11 112 49999999
Q ss_pred eeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 109 YRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 109 Y~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
+.+++.++.||||.|++ +|+||+++++.
T Consensus 112 ~~~~~~~l~YNkdlf~~----~P~TWdEl~~~ 139 (805)
T 2nvu_B 112 IAVEALSLIYNKDLLPN----PPKTWEEIPAL 139 (805)
T ss_dssp EEEEECEEEECTTTCSS----CCSBSTTHHHH
T ss_pred cccceeEEEEEhHhhcC----CCcCHHHHHHH
Confidence 99999999999999984 78999999753
No 74
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=98.67 E-value=4.8e-08 Score=78.43 Aligned_cols=75 Identities=11% Similarity=-0.001 Sum_probs=56.9
Q ss_pred CCcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeee
Q 040772 28 YMAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWA 106 (142)
Q Consensus 28 ~~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~ya 106 (142)
...+||+..++ .++..++++|+++|++.. ++ +.+++.++ . +|+.|
T Consensus 85 ~~~~DV~~~~~~~~~~~~~~~g~l~~l~~~---~~-~~~~~~~~---------------------------~--~~~~~- 130 (355)
T 3c9h_A 85 KKTADFAFSSAMDLQVKLSNDGYAQRSDLA---MS-ARWPAWAN---------------------------W--RNTAY- 130 (355)
T ss_dssp CCBCSEEEESCHHHHHHHHHTTCEECCCCT---TT-TTSCGGGE---------------------------E--TTTEE-
T ss_pred CCCCCEEEecchHHHHHHHhCCCcccCCCh---hh-hhCcchhe---------------------------e--CCeEE-
Confidence 35799999987 557899999999999853 33 44443322 1 25544
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYR 139 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~ 139 (142)
|+..++++|+||++.|++. .+|+||++|++
T Consensus 131 -~~~~~~~~l~YNk~~~~~~--~~P~tw~dL~~ 160 (355)
T 3c9h_A 131 -ALTFEPAVFVYHKPSFTTE--KPPATRAEFVD 160 (355)
T ss_dssp -ECBCEEEEEEEEGGGCSSS--CCCCSHHHHHH
T ss_pred -EEecCcEEEEEEHHhcCCC--CCCCCHHHHHH
Confidence 7788999999999999873 47899999997
No 75
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=98.01 E-value=3.8e-06 Score=65.24 Aligned_cols=62 Identities=19% Similarity=0.052 Sum_probs=46.9
Q ss_pred CcceEEEeCh-HHHHHHHHccccccCCCCcccchhhhcChhHHHHHHHHHHHHHHhhhhHHHHhhcCCCCcCCCCCeeee
Q 040772 29 MAADLVSVGD-SWLSFAIKERLIEPTAGAEDQDWFKCLSHKWKSFYLFVYLLLFALTKSQVYLRRNDAGEIDPRCEIWAA 107 (142)
Q Consensus 29 ~~~DvV~~sd-~~l~~~i~~gLlepLD~s~l~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dp~g~~yav 107 (142)
..+||+++++ .++..++++|+++|.+.+ .+. + .++
T Consensus 56 ~~~Dv~~~~~~~~~~~~~~~g~l~~~~~~-------~~~-----------------------------------~--~~~ 91 (310)
T 1sbp_A 56 IEADTVTLALAYDVNAIAERGRIDKNWIK-------RLP-----------------------------------D--DSA 91 (310)
T ss_dssp CCCSEEEESSHHHHHHHHHTTSSCTTGGG-------GSH-----------------------------------H--HHC
T ss_pred CCCCEEEeCcHHHHHHHHhCCCcCcchhh-------cCC-----------------------------------c--cCC
Confidence 5799999886 899999999999873211 111 0 146
Q ss_pred eeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 108 PYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 108 PY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
|| +++++|+||++.. .+|+||++|+++
T Consensus 92 p~-~~~~~l~yn~~~~-----~~p~tw~dL~~~ 118 (310)
T 1sbp_A 92 PY-TSTIVFLVRKGNP-----KQIHDWNDLIKP 118 (310)
T ss_dssp SE-EBCEEEEEETTCT-----TCCCSGGGGGST
T ss_pred ce-eEEEEEEEeCCCC-----CCCCCHHHHcCc
Confidence 87 7899999999973 358999999875
No 76
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=96.11 E-value=0.0042 Score=48.54 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=25.4
Q ss_pred eeeeeeeeeeEEEEechhhhhcCC-CCCCcHHHHh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNL-ALIEFDGKRY 138 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~-~pp~SW~dL~ 138 (142)
|.+||.+++++|+||++...+.++ .+|++|.+|+
T Consensus 83 ~~~~~~~~~~vi~~~~~~~~~~~i~~~p~sw~dll 117 (296)
T 3cg1_A 83 FYVLFATNEIVIAFTDKSRYVEEMKSNPDKWYEIL 117 (296)
T ss_dssp CCEEEEECCEEEEECTTSTTHHHHHHCGGGHHHHH
T ss_pred cceecccccEEEEEcCCCchhcccCCCCCCHHHHh
Confidence 578999999999999985321111 2469999987
No 77
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=95.44 E-value=0.024 Score=42.03 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=22.3
Q ss_pred eeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 107 APYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 107 vPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
.++.++.++|+||++.- ..|+||++|+++
T Consensus 76 ~~~~~~~~~l~~~~~~~-----~~~~sw~dL~~~ 104 (237)
T 2hxw_A 76 KPLYFREAIILTQKGNP-----LKIKGLKDLANK 104 (237)
T ss_dssp EEEEEEEEEEEESTTCT-----TCCCSHHHHHHS
T ss_pred cccccCceEEEEeCCCC-----CCCCCHHHhcCC
Confidence 45677889999999842 247999999975
No 78
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=95.44 E-value=0.032 Score=43.81 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=25.7
Q ss_pred eeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRY 138 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~ 138 (142)
|.+||.++.++|+||++...+.++ +|++|.+++
T Consensus 78 ~~~~~~~~~l~i~~~~~~~~~~~~-~~~~w~dll 110 (296)
T 3cfx_A 78 WYAAFARNQMILAYTNESKYGDEI-NTDNWYEIL 110 (296)
T ss_dssp CEEEEEECCEEEEECTTSTTTTTC-CTTTHHHHH
T ss_pred ceeeeEeeeEEEEEeCCCccccCC-CcccHHHHh
Confidence 578999999999999997643222 468999965
No 79
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=94.69 E-value=0.063 Score=41.94 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=25.7
Q ss_pred eeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRY 138 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~ 138 (142)
|.+||.++.++|+||++.....++ +|++|.+++
T Consensus 78 ~~~~~~~~~lvl~~~~~~~~~~~i-~~~~w~dll 110 (295)
T 3cij_A 78 WTIMFAKNQIVLAYRNDSRYADEI-NSQNWYEIL 110 (295)
T ss_dssp CCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHH
T ss_pred eeeEEEeeeEEEEEeCCCcccccc-CcccHHHHh
Confidence 568999999999999997643222 468999965
No 80
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=94.63 E-value=0.067 Score=41.86 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=25.5
Q ss_pred eeeeeeeeeeEEEEechhhhhcCCCCCCcHHHHh
Q 040772 105 WAAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRY 138 (142)
Q Consensus 105 yavPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~ 138 (142)
+.+||.++.++|+||++...+.++ ++++|.+++
T Consensus 78 ~~~~~~~~~lvi~~~~~~~~~~~i-~~~~w~dll 110 (292)
T 3cfz_A 78 WYVMFARNEIVLAYTDKSKYKDEI-NSTNWYKIL 110 (292)
T ss_dssp CCEEEEECCEEEEECTTSTTTTTC-CTTTHHHHT
T ss_pred ceeeeEeccEEEEEcCCCccccCC-CcccHHHHh
Confidence 568999999999999987543222 358999965
No 81
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=92.80 E-value=0.29 Score=37.27 Aligned_cols=34 Identities=6% Similarity=-0.052 Sum_probs=24.9
Q ss_pred eeeeeeeeeEEEEechh-hhhcCCCCCCcHHHHhh
Q 040772 106 AAPYRWGTMVIAYQKSK-FRKHNLALIEFDGKRYR 139 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~-~~~~g~~pp~SW~dL~~ 139 (142)
..||..+.++|+||++. .+..++..+++|.++.+
T Consensus 81 ~~~~~~~~lvl~~~~~~~~~~~~i~~~~~l~~l~~ 115 (237)
T 3r26_A 81 RQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLN 115 (237)
T ss_dssp CEEEEEECEEEEEESSCCCCCCCCSTTCCHHHHHT
T ss_pred eeeeEcceEEEEEeCCCCcccccccchHhHHHhcC
Confidence 36888899999999985 33234445689998875
No 82
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=85.79 E-value=2.2 Score=33.22 Aligned_cols=18 Identities=17% Similarity=-0.003 Sum_probs=14.4
Q ss_pred eeeeeeeeeEEEEechhh
Q 040772 106 AAPYRWGTMVIAYQKSKF 123 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~ 123 (142)
..+|..+.++|+||++..
T Consensus 97 ~~~~a~~~lvl~~~~~~~ 114 (253)
T 3gzg_A 97 RHNLLGNTLVLVAPASSK 114 (253)
T ss_dssp EEEEEEECEEEEEETTCC
T ss_pred ceeEEeeEEEEEEECCCC
Confidence 357778889999999864
No 83
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=83.51 E-value=1.2 Score=31.46 Aligned_cols=29 Identities=14% Similarity=-0.012 Sum_probs=20.9
Q ss_pred eeeeeeeeeEEEEechhhhhcCCCCCCcHHHHhhh
Q 040772 106 AAPYRWGTMVIAYQKSKFRKHNLALIEFDGKRYRI 140 (142)
Q Consensus 106 avPY~wGt~gIaYnkd~~~~~g~~pp~SW~dL~~~ 140 (142)
..|+.++.++++|+++.-. +.+|++|.++
T Consensus 74 ~~~~~~~~~vlv~~~~~~~------~~~~~dL~~~ 102 (231)
T 1atg_A 74 RFTYAIGKLVLWSAKPGLV------DNQGKVLAGN 102 (231)
T ss_dssp CEEEEECCEEEEESSTTTS------CTTSGGGGSS
T ss_pred eeEeeeeeEEEEEcCCCCC------CcchhhhccC
Confidence 4788888999999987531 2478887753
No 84
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase; ssgcid, NIH, niaid, SBRI, UW, decode, deoxycytidine triphosp deaminase; 2.10A {Anaplasma phagocytophilum}
Probab=28.37 E-value=31 Score=27.05 Aligned_cols=27 Identities=19% Similarity=0.454 Sum_probs=24.1
Q ss_pred EEEeChHHHHHHH-HccccccCCCCccc
Q 040772 33 LVSVGDSWLSFAI-KERLIEPTAGAEDQ 59 (142)
Q Consensus 33 vV~~sd~~l~~~i-~~gLlepLD~s~l~ 59 (142)
+.+++|.++..++ +.+.|+|++.++++
T Consensus 22 MmILsd~~I~~~~~~~~~I~Pf~~~~iq 49 (206)
T 3km3_A 22 MSVMPDHWIKERALKDGMISPFVDHKEG 49 (206)
T ss_dssp CEECCHHHHHHHHHHHCCEESCCSSCBS
T ss_pred eEEcCHHHHHHHHHhCCCccCCCHHHcC
Confidence 6788999999999 88999999998875
Done!