BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040774
(1035 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD C+L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 56 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 114
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N +L E L L
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 174
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 175 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 208
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD C+L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N +L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD C+L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD C+L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD C+L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD C+L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD C+L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 8/151 (5%)
Query: 218 ISLYDNNISEIP-QGWECPQLEFFYNFAPNNSPLQ-IPDNIFIGMPKLKVLDFTRMRLLS 275
+ L+DN ++ +P Q +E L N+P++ IP F +P L+ LD ++ L
Sbjct: 88 LELFDNRLTTVPTQAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE 145
Query: 276 LPS--SIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PMEIGQLTQLK 332
S + L +LR L L C L+DI + L +LE L L + ++ + P LT L+
Sbjct: 146 YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 333 LLDLSNCSKLKVIAPNVLSNLSQLEELYMAN 363
L L + +++ I N +L LEEL +++
Sbjct: 206 KLWLMH-AQVATIERNAFDDLKSLEELNLSH 235
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 269 TRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIG-- 326
TR L +P+SI + T L +S Q+ LR LEIL L + + ++ E+G
Sbjct: 22 TRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI--EVGAF 79
Query: 327 ----QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
L L+L D ++L + LS+L EL++ N IE
Sbjct: 80 NGLPSLNTLELFD----NRLTTVPTQAFEYLSKLRELWLRNNPIE 120
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 8/151 (5%)
Query: 218 ISLYDNNISEIP-QGWECPQLEFFYNFAPNNSPLQ-IPDNIFIGMPKLKVLDFTRMRLLS 275
+ L+DN ++ +P Q +E L N+P++ IP F +P L+ LD ++ L
Sbjct: 88 LELFDNRLTTVPTQAFE--YLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE 145
Query: 276 LPS--SIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PMEIGQLTQLK 332
S + L +LR L L C L+DI + L +LE L L + ++ + P LT L+
Sbjct: 146 YISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLR 205
Query: 333 LLDLSNCSKLKVIAPNVLSNLSQLEELYMAN 363
L L + +++ I N +L LEEL +++
Sbjct: 206 KLWLMH-AQVATIERNAFDDLKSLEELNLSH 235
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 269 TRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIG-- 326
TR L +P+SI + T L +S Q+ LR LEIL L + + ++ E+G
Sbjct: 22 TRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKI--EVGAF 79
Query: 327 ----QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
L L+L D ++L + LS+L EL++ N IE
Sbjct: 80 NGLPSLNTLELFD----NRLTTVPTQAFEYLSKLRELWLRNNPIE 120
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD +L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N +L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 218 ISLYDNNISEIPQGWECPQLEFFY-----NFAPNNSPLQ-IPDNIFIGMPKLKVLDFTRM 271
+ L+DN ++ IP G F Y N+P++ IP F +P L+ LD +
Sbjct: 117 LELFDNRLTTIPNG------AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 272 RLLSLPS--SIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PMEIGQL 328
+ LS S + L++LR L L C L +I + L KL+ L L + + + P L
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 329 TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMAN 363
L+ L + S+++VI N NL L E+ +A+
Sbjct: 231 MHLQKLWMIQ-SQIQVIERNAFDNLQSLVEINLAH 264
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 4/117 (3%)
Query: 255 NIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEIL 311
N F + L++L +R + ++ + + L +L TL L +L I L KL+ L
Sbjct: 82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141
Query: 312 SLQASAIEQLP-MEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
L+ + IE +P ++ L+ LDL +L I+ LS L L +A C++
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD +L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N +L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 68/154 (44%), Gaps = 14/154 (9%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L L LD +L ++V G L L L L + ++ LP+ L L +LD+S ++L
Sbjct: 55 TRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLT 113
Query: 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGL--------SIERSNASLVE-----LKNLSR 390
+ L L +L+ELY+ ++ GL + +N +L E L L
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173
Query: 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTW 424
L TL + +P GFF L + + G+ W
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 112/276 (40%), Gaps = 44/276 (15%)
Query: 226 SEIPQGWE------------CPQLEFFYNFAPNNSPL-------------QIPDNIFIGM 260
S IP+ WE C +L F+ P+N P + F
Sbjct: 18 SSIPESWEPCVEVVPNITYQCMELNFYK--IPDNLPFSTKNLDLSFNPLRHLGSYSFFSF 75
Query: 261 PKLKVLDFTRMRLLSLPSSIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEILSLQ 314
P+L+VLD +R + ++ + L+ L TL L ++ + + + L+KL +
Sbjct: 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135
Query: 315 ASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLS 374
+++E P IG L LK L++++ P SNL+ LE L +++ I+ S
Sbjct: 136 LASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ------S 187
Query: 375 IERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYXXXX 434
I ++ ++ L L+ I P F +++ +++ + + +D +
Sbjct: 188 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCI 245
Query: 435 XXXXXXN-SRICLGEWRGMKNVEYLCLDELPGLTNV 469
R+ LGE+R N+E L GL N+
Sbjct: 246 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 257 FIGMPKLKVLDFTRMRLLSLPSSIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEI 310
F P+L+VLD +R + ++ + L+ L TL L ++ + + + L+KL
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 311 LSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
L +++E P IG L LK L++++ P SNL+ LE L +++ I+
Sbjct: 110 LETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 32/258 (12%)
Query: 232 WECPQLEFFYNFAPNNSPL-------------QIPDNIFIGMPKLKVLDFTRMRLLSLPS 278
++C +L F+ P+N P + F P+L+VLD +R + ++
Sbjct: 12 YQCMELNFYK--IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 279 SIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEILSLQASAIEQLPMEIGQLTQLK 332
+ L+ L TL L ++ + + + L+KL + +++E P IG L LK
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLK 127
Query: 333 LLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392
L++++ P SNL+ LE L +++ I+ SI ++ ++ L L+
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ------SIYCTDLRVLHQMPLLNLS 181
Query: 393 TLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYXXXXXXXXXXN-SRICLGEWRG 451
I P F +++ +++ + + +D + R+ LGE+R
Sbjct: 182 LDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 452 MKNVEYLCLDELPGLTNV 469
N+E L GL N+
Sbjct: 240 EGNLEKFDKSALEGLCNL 257
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 32/258 (12%)
Query: 232 WECPQLEFFYNFAPNNSPL-------------QIPDNIFIGMPKLKVLDFTRMRLLSLPS 278
++C +L F+ P+N P + F P+L+VLD +R + ++
Sbjct: 12 YQCMELNFYK--IPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 279 SIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEILSLQASAIEQLPMEIGQLTQLK 332
+ L+ L TL L ++ + + + L+KL + +++E P IG L LK
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLK 127
Query: 333 LLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392
L++++ P SNL+ LE L +++ I+ SI ++ ++ L L+
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ------SIYCTDLRVLHQMPLLNLS 181
Query: 393 TLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYXXXXXXXXXXN-SRICLGEWRG 451
I P F +++ +++ + + +D + R+ LGE+R
Sbjct: 182 LDLSLNPMNFIQPGAF--KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 452 MKNVEYLCLDELPGLTNV 469
N+E L GL N+
Sbjct: 240 EGNLEKFDKSALEGLCNL 257
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 37.7 bits (86), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 257 FIGMPKLKVLDFTRMRLLSLPSSIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEI 310
F P+L+VLD +R + ++ + L+ L TL L ++ + + + L+KL
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 311 LSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
+ +++E P IG L LK L++++ P SNL+ LE L +++ I+
Sbjct: 110 VETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 257 FIGMPKLKVLDFTRMRLLSLPSSIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEI 310
F P+L+VLD +R + ++ + L+ L TL L ++ + + + L+KL
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 311 LSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
+ +++E P IG L LK L++++ P SNL+ LE L +++ I+
Sbjct: 109 VETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 257 FIGMPKLKVLDFTRMRLLSLPSSIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEI 310
F P+L+VLD +R + ++ + L+ L TL L ++ + + + L+KL
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 311 LSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
+ +++E P IG L LK L++++ P SNL+ LE L +++ I+
Sbjct: 109 VETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 257 FIGMPKLKVLDFTRMRLLSLPSSIHL-LTDLRTLCLDSCQLEDIRV-----IGELRKLEI 310
F P+L+VLD +R + ++ + L+ L TL L ++ + + + L+KL
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 311 LSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
+ +++E P IG L LK L++++ P SNL+ LE L +++ I+
Sbjct: 108 VETNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 247 NSPLQIPDNIFIGMPKLKVLD--FTRMRLLSLPSSIHLLTDLRTLCLDSCQLE--DIRVI 302
N PL + D F P+L++LD FT + + + S L LR L L C L+ + ++
Sbjct: 385 NEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLL 444
Query: 303 GELRKLEILSLQASAIEQLPMEIGQLTQ----LKLLDLSNCSKLKV 344
L+ L L+LQ ++ + + L Q L++L LS+C+ L +
Sbjct: 445 AGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSI 490
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.4 bits (80), Expect = 0.18, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 306 RKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 364
R L IL L ++A+ + LT L+ LDLS+ ++L+V+ P L L L++ C
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 365 SIEWEVLGLSIERSNASL 382
+ + LG + R A+L
Sbjct: 115 GL--QELGPGLFRGLAAL 130
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 300 RVIGELRKLEILSLQASAIE-QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEE 358
+ IG + L IL+L + I +P E+G L L +LDLS+ +KL P +S L+ L E
Sbjct: 647 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTE 705
Query: 359 LYMANCSIEWEV 370
+ ++N ++ +
Sbjct: 706 IDLSNNNLSGPI 717
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 300 RVIGELRKLEILSLQASAIE-QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEE 358
+ IG + L IL+L + I +P E+G L L +LDLS+ +KL P +S L+ L E
Sbjct: 650 KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTE 708
Query: 359 LYMANCSIEWEV 370
+ ++N ++ +
Sbjct: 709 IDLSNNNLSGPI 720
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS 275
S++ +SE+PQG P + N NN + I + F + L+VL R +
Sbjct: 57 SKVVCTRRGLSEVPQG--IPSNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 276 LP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLP-MEIGQLTQL 331
+ + + L L TL L L I L KL L L+ + IE +P ++ L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 332 KLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367
LDL KL+ I+ L L+ L + C+I+
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.9 bits (76), Expect = 0.48, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNC 339
+ L +L L L Q+ D+ + L K+ L L + ++ + I L +K LDL++
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS- 116
Query: 340 SKLKVIAPNVLSNLSQLEELYMANCSIE--------WEVLGLSIERSNAS-LVELKNLSR 390
+++ + P L+ LS L+ LY+ I + LSI + S L L NLS+
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK 174
Query: 391 LTTLE 395
LTTL+
Sbjct: 175 LTTLK 179
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 218 ISLYDNNISEIPQGW--ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS 275
+ L +N ++ +P G QL+ Y N +P +F + KLK L +L S
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLY--LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 276 LPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPMEIGQLTQ 330
+P+ + LT+L+TL L + QL+ + L KL+ ++L + + EI L+Q
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 260 MPKLKVLDFTRMRLLSL---PSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQAS 316
+ KL+ L R RL +L PS+ L L LD+ +L D + L+ LEILS++ +
Sbjct: 84 LTKLEELSVNRNRLKNLNGIPSAC-----LSRLFLDNNELRDTDSLIHLKNLEILSIRNN 138
Query: 317 AIEQLPMEIGQLTQLKLLDL 336
++ + M +G L++L++LDL
Sbjct: 139 KLKSIVM-LGFLSKLEVLDL 157
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 29/140 (20%)
Query: 252 IPDNIFIGMPKLKVLDFTRMRLLSLPSSI-------------------------HLLTDL 286
+P F + KL++L +L +LP+ I L +L
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 287 RTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPMEI-GQLTQLKLLDLSNCSKLK 343
L LD QL+ + RV L KL LSL + ++ LP + +LT LK L L N ++LK
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLK 170
Query: 344 VIAPNVLSNLSQLEELYMAN 363
+ L++L+ L + N
Sbjct: 171 RVPEGAFDKLTELKTLKLDN 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 218 ISLYDNNISEIPQGW--ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS 275
+ L +N ++ +P G QL+ Y N +P +F + KLK L +L S
Sbjct: 88 LGLANNQLASLPLGVFDHLTQLDKLY--LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 276 LPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSL 313
+P+ + LT+L+TL L + QL+ + L KL+ ++L
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 220 LYDNNISEIPQ-GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS 278
L N I EI + QL+ N + NN+ ++P+++F G +LD +R R+ SLPS
Sbjct: 161 LNKNGIQEIHNCAFNGTQLDEL-NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 130 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 188
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 189 DLRALAG--LKNLDVL-ELFSQEC 209
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 56/245 (22%)
Query: 179 SMHDVVSDVAISIASRDYHVFTM------RNEGDPRQWPDKKCSRISLYDNNISEIPQ-- 230
S+ + ++ +S+A H+ + + E D W + + D ++EI Q
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW----LGHLEVLDLGLNEIGQEL 421
Query: 231 -GWECPQLE-FFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRT 288
G E LE F + N LQ+ N F +P L+ L R+ L ++ SS LR
Sbjct: 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 481
Query: 289 LC-------------------LDSCQLED------------------IRVIGELRKLEIL 311
L L+ ++ D I + L L IL
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541
Query: 312 SLQASAIEQLPMEIGQ-LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMAN---CSIE 367
+L+++ +++P+E+ + L +LK++DL + L + +V +N L+ L + S+E
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 600
Query: 368 WEVLG 372
+V G
Sbjct: 601 KKVFG 605
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.1 bits (74), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 191
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 192 DLRALAG--LKNLDVL-ELFSQEC 212
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS 275
+R+ L N + +P G + N +PD +F + KL +L +L S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 276 LPSSI-HLLTDLRTLCLDSCQLEDI 299
LP+ + LT L+ L LD+ QL+ +
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSV 115
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 56/245 (22%)
Query: 179 SMHDVVSDVAISIASRDYHVFTM------RNEGDPRQWPDKKCSRISLYDNNISEIPQ-- 230
S+ + ++ +S+A H+ + + E D W + + D ++EI Q
Sbjct: 376 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW----LGHLEVLDLGLNEIGQEL 431
Query: 231 -GWECPQLE-FFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRT 288
G E LE F + N LQ+ N F +P L+ L R+ L ++ SS LR
Sbjct: 432 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 491
Query: 289 LC-------------------LDSCQLED------------------IRVIGELRKLEIL 311
L L+ ++ D I + L L IL
Sbjct: 492 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 551
Query: 312 SLQASAIEQLPMEIGQ-LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMAN---CSIE 367
+L+++ +++P+E+ + L +LK++DL + L + +V +N L+ L + S+E
Sbjct: 552 NLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 610
Query: 368 WEVLG 372
+V G
Sbjct: 611 KKVFG 615
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 220 LYDNNISEIPQ-GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS 278
L N I EI + QL+ N + NN+ ++P+++F G +LD +R R+ SLPS
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDEL-NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS 219
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 100/245 (40%), Gaps = 56/245 (22%)
Query: 179 SMHDVVSDVAISIASRDYHVFTM------RNEGDPRQWPDKKCSRISLYDNNISEIPQ-- 230
S+ + ++ +S+A H+ + + E D W + + D ++EI Q
Sbjct: 371 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW----LGHLEVLDLGLNEIGQEL 426
Query: 231 -GWECPQLE-FFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRT 288
G E LE F + N LQ+ N F +P L+ L R+ L ++ SS LR
Sbjct: 427 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN 486
Query: 289 LC-------------------LDSCQLED------------------IRVIGELRKLEIL 311
L L+ ++ D I + L L IL
Sbjct: 487 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 546
Query: 312 SLQASAIEQLPMEIGQ-LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMAN---CSIE 367
+L+++ +++P+E+ + L +LK++DL + L + +V +N L+ L + S+E
Sbjct: 547 NLESNGFDEIPVEVFKDLFELKIIDLG-LNNLNTLPASVFNNQVSLKSLNLQKNLITSVE 605
Query: 368 WEVLG 372
+V G
Sbjct: 606 KKVFG 610
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 252 IPDNIFIGMPKLKVLDFTRMRLLSLPSSI-HLLTDLRTLCLDSCQLEDI--RVIGELRKL 308
+PD +F + L L +L SLP + LT+L L LD+ QL+ + V +L +L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 309 EILSLQASAIEQLP 322
+ LSL + ++ +P
Sbjct: 184 KQLSLNDNQLKSVP 197
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 248 SPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLED-IRVIGEL 305
+PL I F +P L++LD ++ L P + L L L L C L D + G
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119
Query: 306 RKLEILS---LQASAIEQLPME--IGQLTQLKLLDLSN 338
R L+ L+ L + I L + G+L LK +D S+
Sbjct: 120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 191
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 192 DLRALAG--LKNLDVL-ELFSQEC 212
>pdb|3O08|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O08|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form I
pdb|3O1B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Ii
pdb|3O1W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O1W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iii
pdb|3O4W|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O4W|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Iv
pdb|3O5B|A Chain A, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O5B|B Chain B, Crystal Structure Of Dimeric Klhxk1 In Crystal Form Vii
With Glucose Bound (Open State)
pdb|3O6W|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O6W|B Chain B, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Viii
(Open State)
pdb|3O80|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Ix
(Open State)
pdb|3O8M|A Chain A, Crystal Structure Of Monomeric Klhxk1 In Crystal Form Xi
With Glucose Bound (Closed State)
Length = 485
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 302 IGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYM 361
+GE+ +L +L L S +I +L + ++D S SK I + NL ++L+
Sbjct: 309 LGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDTSYPSK---IEDDPFENLEDTDDLFK 365
Query: 362 ANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINIL 399
N +IE V+ + R A LV + +RLT ++ +
Sbjct: 366 TNLNIETTVVERKLIRKLAELVGTR-AARLTVCGVSAI 402
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 131 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 189
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 190 DLRALAG--LKNLDVL-ELFSQEC 210
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKL 342
LTDL +L L+ Q+EDI + L L + + I + + T+L L + N +K+
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-TPVANXTRLNSLKIGN-NKI 233
Query: 343 KVIAPNVLSNLSQL 356
++P L+NLSQL
Sbjct: 234 TDLSP--LANLSQL 245
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 284 TDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343
T L +L + + ++ D+ + L +L L + + I + + LT+LK L N +
Sbjct: 221 TRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKXL---NVGSNQ 276
Query: 344 VIAPNVLSNLSQLEELYMANCSI---EWEVLG 372
+ +VL+NLSQL L++ N + + EV+G
Sbjct: 277 ISDISVLNNLSQLNSLFLNNNQLGNEDXEVIG 308
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 153 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 211
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 212 DLRALAG--LKNLDVL-ELFSQEC 232
>pdb|2OH2|A Chain A, Ternary Complex Of Human Dna Polymerase
pdb|2OH2|B Chain B, Ternary Complex Of Human Dna Polymerase
pdb|2W7O|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7O|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7P|A Chain A, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|2W7P|B Chain B, Structure And Activity Of Bypass Synthesis By Human Dna
Polymerase Kappa Opposite The 7,8-Dihydro-8-
Oxodeoxyguanosine Adduct
pdb|3IN5|A Chain A, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
pdb|3IN5|B Chain B, Structure Of Human Dna Polymerase Kappa Inserting Datp
Opposite An 8-Oxog Dna Lesion
Length = 508
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 211 PDKKCSRISLYDNNIS-----EIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKV 265
P K+ +++S ++ +IS E P + P F NF N+P + +++ G +V
Sbjct: 216 PGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEV 275
Query: 266 LDFTRMRL-----LSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQ 320
+ R R+ L+ + I T L +C D + G+ + L I+
Sbjct: 276 VKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPN-----GQYQILPNRQAVMDFIKD 330
Query: 321 LPME----IGQLTQ--LKLLDLSNCSKL 342
LP+ IG++T+ LK L + C++L
Sbjct: 331 LPIRKVSGIGKVTEKMLKALGIITCTEL 358
>pdb|3PZP|A Chain A, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
pdb|3PZP|B Chain B, Human Dna Polymerase Kappa Extending Opposite A Cis-Syn
Thymine Dimer
Length = 517
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 211 PDKKCSRISLYDNNIS-----EIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKV 265
P K+ +++S ++ +IS E P + P F NF N+P + +++ G +V
Sbjct: 223 PGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEV 282
Query: 266 LDFTRMRL-----LSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQ 320
+ R R+ L+ + I T L +C D + G+ + L I+
Sbjct: 283 VKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPN-----GQYQILPNRQAVMDFIKD 337
Query: 321 LPME----IGQLTQ--LKLLDLSNCSKL 342
LP+ IG++T+ LK L + C++L
Sbjct: 338 LPIRKVSGIGKVTEKMLKALGIITCTEL 365
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 22/142 (15%)
Query: 220 LYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSS 279
L+DN I+++ G + + +N +P +F + +L VLD +L LPS+
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNC 339
V L L+ L + + + +LP I +LT L L L
Sbjct: 107 ---------------------VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ- 144
Query: 340 SKLKVIAPNVLSNLSQLEELYM 361
++LK I LS L Y+
Sbjct: 145 NQLKSIPHGAFDRLSSLTHAYL 166
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 59/127 (46%), Gaps = 36/127 (28%)
Query: 266 LDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEILSLQA--------- 315
L++T +R SLP+SI L +L++L + + L + I L KLE L L+
Sbjct: 190 LEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 316 ----------------SAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEEL 359
S + LP++I +LTQL+ LDL C L + P++++ L
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLP----- 301
Query: 360 YMANCSI 366
ANC I
Sbjct: 302 --ANCII 306
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKL 342
L L +L L + ++ DI V+ L KL+ LSL+ + I ++ + + +LT+L+ L LS
Sbjct: 131 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRI-VPLARLTKLQNLYLSKNHIS 189
Query: 343 KVIAPNVLSNLSQLE 357
+ A L NL LE
Sbjct: 190 DLRALRGLKNLDVLE 204
>pdb|1T94|A Chain A, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
pdb|1T94|B Chain B, Crystal Structure Of The Catalytic Core Of Human Dna
Polymerase Kappa
Length = 459
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 21/148 (14%)
Query: 211 PDKKCSRISLYDNNIS-----EIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKV 265
P K+ +++S ++ +IS E P + P F NF N+P + +++ G +V
Sbjct: 167 PGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQILQNSVVFGTSAQEV 226
Query: 266 LDFTRMRL-----LSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQ 320
+ R R+ L+ + I T L +C D + G+ + L I+
Sbjct: 227 VKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPN-----GQYQILPNRQAVMDFIKD 281
Query: 321 LPME----IGQLTQ--LKLLDLSNCSKL 342
LP+ IG++T+ LK L + C++L
Sbjct: 282 LPIRKVSGIGKVTEKMLKALGIITCTEL 309
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 30/149 (20%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PME-IGQLTQLKLL--D 335
+ +LT+L L L+ QL+DI + L L L L + I L P+ + +LT+LKL
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 272
Query: 336 LSNCS----------------KLKVIAPNVLSNLSQLE--ELYMANCSIEWEVLGLS-IE 376
+SN S +L+ I+P +SNL L LY N S V L+ ++
Sbjct: 273 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 377 R---SNASLVELKNLSRLTTLEINILDAG 402
R SN + ++ +L+ LT IN L AG
Sbjct: 331 RLFFSNNKVSDVSSLANLT--NINWLSAG 357
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 30/149 (20%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PME-IGQLTQLKLL--D 335
+ +LT+L L L+ QL+DI + L L L L + I L P+ + +LT+LKL
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 271
Query: 336 LSNCS----------------KLKVIAPNVLSNLSQLE--ELYMANCSIEWEVLGLS-IE 376
+SN S +L+ I+P +SNL L LY N S V L+ ++
Sbjct: 272 ISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 377 R---SNASLVELKNLSRLTTLEINILDAG 402
R SN + ++ +L+ LT IN L AG
Sbjct: 330 RLFFSNNKVSDVSSLANLT--NINWLSAG 356
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 290 CLDSCQLEDIRVIGELRKLEILS---LQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIA 346
LD L+ + + K + L+ L +++ +LP EI L+ L++LDLS+ ++L +
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSL- 285
Query: 347 PNVLSNLSQLEELYMAN---CSIEWEVLGL 373
P L + QL+ Y + ++ WE L
Sbjct: 286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNL 315
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PME-IGQLTQLKLL--D 335
+ +LT+L L L+ QL+DI + L L L L + I L P+ + +LT+LKL
Sbjct: 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 276
Query: 336 LSNCSKLKVIAPNVLSNL----SQLEEL 359
+SN S L + L+NL +QLE++
Sbjct: 277 ISNISPLAGLT--ALTNLELNENQLEDI 302
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PME-IGQLTQLKLL--D 335
+ +LT+L L L+ QL+DI + L L L L + I L P+ + +LT+LKL
Sbjct: 216 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 275
Query: 336 LSNCSKLKVIAPNVLSNL----SQLEEL 359
+SN S L + L+NL +QLE++
Sbjct: 276 ISNISPLAGLT--ALTNLELNENQLEDI 301
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 17/126 (13%)
Query: 290 CLDS---CQLEDIRVI--GELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKV 344
CLD+ C + ++V+ G R + L L + +P E+ L L+DLSN +++
Sbjct: 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRIST 68
Query: 345 IAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGIL 404
++ SN++QL L ++ + L R+ L L RL +L N D ++
Sbjct: 69 LSNQSFSNMTQLLTLILS-----YNRLRCIPPRTFDGLKSL----RLLSLHGN--DISVV 117
Query: 405 PSGFFS 410
P G F+
Sbjct: 118 PEGAFN 123
>pdb|1VA6|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|1VA6|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
From Escherichia Coli B Complexed With Transition-State
Analogue
pdb|2D32|A Chain A, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|B Chain B, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|C Chain C, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D32|D Chain D, Crystal Structure Of Michaelis Complex Of Gamma-
Glutamylcysteine Synthetase
pdb|2D33|A Chain A, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|B Chain B, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|C Chain C, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
pdb|2D33|D Chain D, Crystal Structure Of Gamma-Glutamylcysteine Synthetase
Complexed With Aluminum Fluoride
Length = 518
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 194 RDYHVFTMRNEGDPRQWP 211
RD H +T RN GD R WP
Sbjct: 84 RDLHRYTARNMGDERMWP 101
>pdb|1V4G|A Chain A, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|B Chain B, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|C Chain C, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
pdb|1V4G|D Chain D, Crystal Structure Of Gamma-glutamylcysteine Synthetase
From Escherichia Coli B
Length = 518
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 194 RDYHVFTMRNEGDPRQWP 211
RD H +T RN GD R WP
Sbjct: 84 RDLHRYTARNMGDERMWP 101
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PME-IGQLTQLKLL--D 335
+ +LT+L L L+ QL+DI + L L L L + I L P+ + +LT+LKL
Sbjct: 212 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 271
Query: 336 LSNCSKLKVIAPNVLSNL----SQLEEL 359
+SN S L + L+NL +QLE++
Sbjct: 272 ISNISPLAGLT--ALTNLELNENQLEDI 297
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PME-IGQLTQLKLL--D 335
+ +LT+L L L+ QL+DI + L L L L + I L P+ + +LT+LKL
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 272
Query: 336 LSNCSKLKVIAPNVLSNL----SQLEEL 359
+SN S L + L+NL +QLE++
Sbjct: 273 ISNISPLAGLT--ALTNLELNENQLEDI 298
>pdb|2NOI|A Chain A, Structure Of G42a Human 8-Oxoguanine Glycosylase
Crosslinked To Undamaged G-Containing Dna
Length = 325
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 750 VPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFPDYL------SNKLKVLAIENDES 803
+P PR ++ VLPS + R + W G D + +L D+S
Sbjct: 24 IPCPRSELRLDLVLPSAQSFRWREQSPAH--WSGVLADQVWTLTQTEEQLHCTVYRGDKS 81
Query: 804 EVL--PPDLLERFHNLVNLELAYGSYKELFSNEGQVETHVGKLAQ 846
+ PD LE L++ + +L+ + G V++H ++AQ
Sbjct: 82 QASRPTPDELEAVRKYFQLDV---TLAQLYHHWGSVDSHFQEVAQ 123
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQL-PME-IGQLTQLKLL--D 335
+ +LT+L L L+ QL+DI + L L L L + I L P+ + +LT+LKL
Sbjct: 213 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 272
Query: 336 LSNCSKLKVIAPNVLSNL----SQLEEL 359
+SN S L + L+NL +QLE++
Sbjct: 273 ISNISPLAGLT--ALTNLELNENQLEDI 298
>pdb|2NOE|A Chain A, Structure Of Catalytically Inactive G42a Human
8-Oxoguanine Glycosylase Complexed To 8-Oxoguanine Dna
Length = 325
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 750 VPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFPDYL------SNKLKVLAIENDES 803
+P PR ++ VLPS + R + W G D + +L D+S
Sbjct: 24 IPCPRSELRLDLVLPSAQSFRWREQSPAH--WSGVLADQVWTLTQTEEQLHCTVYRGDKS 81
Query: 804 EVL--PPDLLERFHNLVNLELAYGSYKELFSNEGQVETHVGKLAQ 846
+ PD LE L++ + +L+ + G V++H ++AQ
Sbjct: 82 QASRPTPDELEAVRKYFQLDV---TLAQLYHHWGSVDSHFQEVAQ 123
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 151 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 209
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 210 DLRALAG--LKNLDVL-ELFSQEC 230
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 151 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 209
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 210 DLRALAG--LKNLDVL-ELFSQEC 230
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 151 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 209
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 210 DLRALAG--LKNLDVL-ELFSQEC 230
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 306 RKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 364
R L IL L ++ + ++ L L+ LDLS+ ++L+ + P L +L L++ C
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 365 SIEWEVLGLSIERSNASL 382
+ + LG + R A+L
Sbjct: 116 GL--QELGPGLFRGLAAL 131
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.4 bits (67), Expect = 6.0, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 306 RKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 364
R L IL L ++ + ++ L L+ LDLS+ ++L+ + P L +L L++ C
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 365 SIEWEVLGLSIERSNASL 382
+ + LG + R A+L
Sbjct: 115 GL--QELGPGLFRGLAAL 130
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS--NCS 340
L L +L L + ++ DI V+ L KL+ LSL+ + I + + + LT+L+ L LS + S
Sbjct: 128 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHIS 186
Query: 341 KLKVIAPNVLSNLSQLEELYMANC 364
L+ +A L NL L EL+ C
Sbjct: 187 DLRALAG--LKNLDVL-ELFSQEC 207
>pdb|3MGF|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
pdb|3MGF|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 7.5
Length = 218
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 939 TELVVASEGDAANDEIIFPKLMFLKLHRLQSLTTFCSANYTFKFPSLFYLSVR 991
TE + AS+G D ++ KL H+ Q TT+ +A K P Y+S R
Sbjct: 146 TEKITASDGVLKGDVTMYLKLEGGGNHKCQFKTTYKAAKKILKMPGSHYISHR 198
>pdb|2ZMU|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 9.1
pdb|2ZMW|A Chain A, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|B Chain B, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|C Chain C, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
pdb|2ZMW|D Chain D, Crystal Structure Of Monomeric Kusabira-Orange (Mko),
Orange-Emitting Gfp-Like Protein, At Ph 6.0
Length = 223
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 939 TELVVASEGDAANDEIIFPKLMFLKLHRLQSLTTFCSANYTFKFPSLFYLSVR 991
TE + AS+G D ++ KL H+ Q TT+ +A K P Y+S R
Sbjct: 143 TEKITASDGVLKGDVTMYLKLEGGGNHKCQFKTTYKAAKKILKMPGSHYISHR 195
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 765 SLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAY 824
++ E+RL +N I I G F Y KL+ + + N++ L PD + +L +L L Y
Sbjct: 33 TITEIRLEQN-TIKVIPPGAFSPY--KKLRRIDLSNNQISELAPDAFQGLRSLNSLVL-Y 88
Query: 825 GSY-----KELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWE-QNSKLNTV 873
G+ K LF ++ + +I L ++ DL +L L ++KL T+
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTI 143
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 765 SLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAY 824
++ E+RL +N I I G F Y KL+ + + N++ L PD + +L +L L Y
Sbjct: 33 TITEIRLEQN-TIKVIPPGAFSPY--KKLRRIDLSNNQISELAPDAFQGLRSLNSLVL-Y 88
Query: 825 GSY-----KELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWE-QNSKLNTV 873
G+ K LF ++ + +I L ++ DL +L L ++KL T+
Sbjct: 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTI 143
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 261 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI 299
PK+KVLD R++S+P + L L+ L + S QL+ +
Sbjct: 450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV 488
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,488,602
Number of Sequences: 62578
Number of extensions: 1150520
Number of successful extensions: 2884
Number of sequences better than 100.0: 81
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 2733
Number of HSP's gapped (non-prelim): 198
length of query: 1035
length of database: 14,973,337
effective HSP length: 109
effective length of query: 926
effective length of database: 8,152,335
effective search space: 7549062210
effective search space used: 7549062210
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)