Query 040774
Match_columns 1035
No_of_seqs 517 out of 4477
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 11:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.5E-58 7.6E-63 544.2 26.9 361 1-397 297-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.4E-48 7.4E-53 488.0 37.7 551 1-671 332-909 (1153)
3 PLN00113 leucine-rich repeat r 100.0 1.8E-33 4E-38 356.8 30.2 293 213-572 69-368 (968)
4 PLN00113 leucine-rich repeat r 100.0 2.6E-33 5.6E-38 355.5 30.0 531 235-908 69-603 (968)
5 KOG0618 Serine/threonine phosp 99.9 1.3E-25 2.8E-30 250.8 -3.4 143 218-364 3-147 (1081)
6 KOG0472 Leucine-rich repeat pr 99.9 7.5E-27 1.6E-31 236.2 -14.0 176 213-405 45-222 (565)
7 KOG4194 Membrane glycoprotein 99.9 2.9E-22 6.2E-27 212.4 9.9 368 214-666 53-427 (873)
8 KOG4194 Membrane glycoprotein 99.9 4.2E-23 9E-28 218.6 3.0 243 213-490 78-328 (873)
9 PLN03210 Resistant to P. syrin 99.9 8.9E-21 1.9E-25 240.0 22.6 316 599-997 610-944 (1153)
10 KOG0618 Serine/threonine phosp 99.8 3.9E-23 8.5E-28 231.1 -2.5 481 266-936 3-487 (1081)
11 KOG0444 Cytoskeletal regulator 99.8 5.6E-23 1.2E-27 218.7 -6.0 172 214-401 8-185 (1255)
12 KOG0444 Cytoskeletal regulator 99.8 8.8E-23 1.9E-27 217.2 -4.7 182 213-406 55-239 (1255)
13 KOG0472 Leucine-rich repeat pr 99.8 4.5E-24 9.8E-29 216.2 -16.5 214 214-490 92-308 (565)
14 PF00931 NB-ARC: NB-ARC domain 99.8 6.9E-21 1.5E-25 206.1 6.4 143 1-145 137-284 (287)
15 KOG0617 Ras suppressor protein 99.6 1.2E-17 2.5E-22 150.0 -4.4 160 231-407 29-191 (264)
16 KOG4237 Extracellular matrix p 99.6 2.6E-17 5.6E-22 167.5 -5.6 139 224-366 57-200 (498)
17 KOG0617 Ras suppressor protein 99.6 7E-17 1.5E-21 145.0 -3.8 150 213-367 33-186 (264)
18 PRK15387 E3 ubiquitin-protein 99.5 4.7E-13 1E-17 156.9 16.4 118 261-405 201-318 (788)
19 PRK15387 E3 ubiquitin-protein 99.4 1.2E-12 2.6E-17 153.4 16.9 157 215-406 203-359 (788)
20 KOG4237 Extracellular matrix p 99.4 1.7E-14 3.7E-19 147.2 -0.4 152 233-399 42-198 (498)
21 PRK15370 E3 ubiquitin-protein 99.4 1.3E-12 2.9E-17 154.3 10.0 246 214-545 179-426 (754)
22 KOG4658 Apoptotic ATPase [Sign 99.3 1.2E-12 2.7E-17 157.1 7.9 127 259-399 521-652 (889)
23 PRK15370 E3 ubiquitin-protein 99.3 2.5E-11 5.3E-16 143.7 16.4 175 213-418 199-374 (754)
24 KOG4341 F-box protein containi 99.3 2.9E-14 6.2E-19 147.1 -8.1 313 630-1011 139-456 (483)
25 KOG4341 F-box protein containi 99.2 6.1E-13 1.3E-17 137.4 -5.6 291 627-989 162-458 (483)
26 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.6E-15 111.6 5.4 130 258-397 16-148 (175)
27 KOG0532 Leucine-rich repeat (L 99.1 1E-11 2.3E-16 133.1 -2.4 177 213-408 75-253 (722)
28 cd00116 LRR_RI Leucine-rich re 99.0 1.3E-10 2.9E-15 128.2 2.7 137 255-400 17-176 (319)
29 KOG1259 Nischarin, modulator o 99.0 8.5E-11 1.8E-15 115.9 0.1 135 259-406 282-416 (490)
30 PF14580 LRR_9: Leucine-rich r 99.0 4.7E-10 1E-14 107.6 4.7 126 268-406 4-130 (175)
31 KOG0532 Leucine-rich repeat (L 98.9 8.9E-11 1.9E-15 126.1 -4.1 185 218-421 55-244 (722)
32 cd00116 LRR_RI Leucine-rich re 98.8 1.9E-09 4.1E-14 118.9 4.7 109 257-367 77-206 (319)
33 COG4886 Leucine-rich repeat (L 98.7 1.8E-08 3.9E-13 114.4 5.7 170 214-401 117-289 (394)
34 KOG1259 Nischarin, modulator o 98.6 4.7E-09 1E-13 103.8 -0.7 129 233-367 282-412 (490)
35 COG4886 Leucine-rich repeat (L 98.6 4.1E-08 8.9E-13 111.5 5.9 185 218-419 98-285 (394)
36 KOG3207 Beta-tubulin folding c 98.5 3.8E-08 8.2E-13 103.1 3.3 164 532-724 119-282 (505)
37 KOG3207 Beta-tubulin folding c 98.4 5E-08 1.1E-12 102.3 1.2 133 258-401 143-283 (505)
38 KOG1859 Leucine-rich repeat pr 98.3 5.6E-09 1.2E-13 115.4 -9.6 180 209-404 105-294 (1096)
39 PF13855 LRR_8: Leucine rich r 98.3 4.9E-07 1.1E-11 71.0 3.8 58 236-295 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.3 3.7E-07 8.1E-12 71.7 3.1 58 307-365 2-60 (61)
41 PLN03150 hypothetical protein; 98.2 2E-06 4.4E-11 102.1 8.5 85 263-347 420-508 (623)
42 PLN03150 hypothetical protein; 98.2 3.1E-06 6.7E-11 100.6 9.0 109 236-346 419-532 (623)
43 PRK15386 type III secretion pr 98.2 3.7E-06 8.1E-11 90.8 7.9 12 925-936 156-167 (426)
44 PF12799 LRR_4: Leucine Rich r 98.1 4.2E-06 9.1E-11 59.8 3.8 41 261-301 1-41 (44)
45 PRK15386 type III secretion pr 98.1 6.9E-06 1.5E-10 88.7 7.1 74 841-934 48-121 (426)
46 KOG0531 Protein phosphatase 1, 98.0 1.3E-06 2.8E-11 99.2 -0.2 107 258-367 92-199 (414)
47 KOG2120 SCF ubiquitin ligase, 98.0 2.8E-07 6E-12 91.7 -5.0 78 262-339 186-270 (419)
48 KOG0531 Protein phosphatase 1, 97.9 1.1E-06 2.3E-11 100.0 -2.0 167 218-404 77-247 (414)
49 KOG1947 Leucine rich repeat pr 97.9 7.5E-07 1.6E-11 104.8 -4.1 122 627-777 186-308 (482)
50 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.6E-10 56.7 3.9 39 307-346 2-40 (44)
51 KOG2120 SCF ubiquitin ligase, 97.9 5.4E-07 1.2E-11 89.7 -5.1 84 307-400 186-271 (419)
52 KOG3665 ZYG-1-like serine/thre 97.8 1.7E-05 3.8E-10 93.7 4.0 105 213-319 122-233 (699)
53 KOG3665 ZYG-1-like serine/thre 97.7 1.2E-05 2.6E-10 95.0 2.4 134 234-367 121-263 (699)
54 KOG1947 Leucine rich repeat pr 97.7 1.9E-06 4.2E-11 101.3 -4.5 41 959-999 403-443 (482)
55 KOG1909 Ran GTPase-activating 97.6 4.9E-06 1.1E-10 85.3 -2.6 83 213-297 30-133 (382)
56 KOG1859 Leucine-rich repeat pr 97.6 1.5E-06 3.2E-11 96.8 -7.0 122 214-340 165-290 (1096)
57 KOG1909 Ran GTPase-activating 97.6 1.5E-05 3.3E-10 81.8 0.6 179 214-402 93-311 (382)
58 KOG4579 Leucine-rich repeat (L 97.6 9.2E-06 2E-10 71.6 -1.7 102 261-364 27-133 (177)
59 KOG1644 U2-associated snRNP A' 97.4 0.0003 6.4E-09 66.9 5.7 100 236-339 43-150 (233)
60 KOG1644 U2-associated snRNP A' 97.3 0.00037 8E-09 66.3 5.1 103 261-365 42-151 (233)
61 KOG4579 Leucine-rich repeat (L 97.3 3.2E-05 6.9E-10 68.3 -2.0 88 259-347 51-140 (177)
62 KOG2982 Uncharacterized conser 97.1 0.00014 3E-09 73.0 0.1 57 263-319 47-110 (418)
63 KOG2982 Uncharacterized conser 96.8 0.0006 1.3E-08 68.6 2.4 80 260-339 70-156 (418)
64 COG5238 RNA1 Ran GTPase-activa 96.8 0.0008 1.7E-08 66.8 2.7 87 259-346 28-136 (388)
65 KOG2123 Uncharacterized conser 96.3 0.00033 7.2E-09 69.7 -3.4 105 283-395 18-123 (388)
66 KOG2739 Leucine-rich acidic nu 96.3 0.0027 5.7E-08 63.5 2.6 80 286-367 45-129 (260)
67 KOG2739 Leucine-rich acidic nu 95.9 0.0045 9.8E-08 61.9 2.2 64 257-320 61-130 (260)
68 PF13306 LRR_5: Leucine rich r 95.8 0.02 4.3E-07 53.1 6.3 105 252-362 3-111 (129)
69 PF13306 LRR_5: Leucine rich r 95.5 0.03 6.5E-07 51.8 6.4 116 233-357 10-129 (129)
70 PF00560 LRR_1: Leucine Rich R 95.4 0.0072 1.6E-07 35.7 1.1 22 262-283 1-22 (22)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0069 1.5E-07 35.8 0.8 21 307-327 1-21 (22)
72 KOG3864 Uncharacterized conser 95.3 0.0031 6.7E-08 60.3 -1.1 19 871-889 121-139 (221)
73 KOG2123 Uncharacterized conser 95.2 0.002 4.3E-08 64.4 -3.0 98 262-360 20-123 (388)
74 COG5238 RNA1 Ran GTPase-activa 94.1 0.022 4.7E-07 57.0 1.3 175 213-399 30-252 (388)
75 KOG3864 Uncharacterized conser 93.1 0.017 3.6E-07 55.5 -1.3 20 841-860 121-140 (221)
76 PF13504 LRR_7: Leucine rich r 92.9 0.068 1.5E-06 29.2 1.4 16 307-322 2-17 (17)
77 PRK04841 transcriptional regul 92.6 1 2.2E-05 57.6 13.5 151 13-193 176-333 (903)
78 PF13504 LRR_7: Leucine rich r 92.4 0.086 1.9E-06 28.8 1.4 16 262-277 2-17 (17)
79 KOG0473 Leucine-rich repeat pr 91.8 0.0069 1.5E-07 59.0 -5.7 83 282-366 40-123 (326)
80 KOG0473 Leucine-rich repeat pr 89.3 0.015 3.3E-07 56.7 -5.8 83 258-340 39-122 (326)
81 smart00369 LRR_TYP Leucine-ric 87.9 0.43 9.3E-06 29.5 2.0 19 306-324 2-20 (26)
82 smart00370 LRR Leucine-rich re 87.9 0.43 9.3E-06 29.5 2.0 19 306-324 2-20 (26)
83 smart00369 LRR_TYP Leucine-ric 83.2 1 2.2E-05 27.8 2.0 22 328-350 1-22 (26)
84 smart00370 LRR Leucine-rich re 83.2 1 2.2E-05 27.8 2.0 22 328-350 1-22 (26)
85 smart00367 LRR_CC Leucine-rich 81.3 0.8 1.7E-05 28.3 1.0 17 982-998 1-17 (26)
86 TIGR00635 ruvB Holliday juncti 78.9 28 0.00062 37.6 13.0 136 12-172 152-289 (305)
87 PRK00080 ruvB Holliday junctio 78.1 65 0.0014 35.3 15.5 136 12-172 173-310 (328)
88 TIGR03015 pepcterm_ATPase puta 74.5 14 0.0003 39.1 8.9 55 12-66 185-242 (269)
89 smart00364 LRR_BAC Leucine-ric 65.3 3.6 7.7E-05 25.3 1.0 17 307-323 3-19 (26)
90 smart00365 LRR_SD22 Leucine-ri 60.6 7.6 0.00016 24.0 1.8 12 285-296 3-14 (26)
91 PF13516 LRR_6: Leucine Rich r 49.7 6.7 0.00014 23.5 0.4 12 307-318 3-14 (24)
92 PRK00411 cdc6 cell division co 44.2 5.1E+02 0.011 29.1 14.9 142 8-171 196-357 (394)
93 KOG4308 LRR-containing protein 40.7 1.2 2.6E-05 51.1 -7.1 40 354-400 262-301 (478)
94 smart00368 LRR_RI Leucine rich 39.1 23 0.00049 22.3 1.6 13 262-274 3-15 (28)
95 PF02284 COX5A: Cytochrome c o 36.5 1.5E+02 0.0032 25.7 6.4 63 21-83 23-90 (108)
96 cd00923 Cyt_c_Oxidase_Va Cytoc 36.5 1.9E+02 0.0041 24.8 6.9 61 23-83 22-87 (103)
97 PF01637 Arch_ATPase: Archaeal 36.4 49 0.0011 33.8 4.7 50 12-61 184-233 (234)
98 PRK06893 DNA replication initi 33.7 93 0.002 31.9 6.1 56 3-59 144-200 (229)
99 KOG4308 LRR-containing protein 31.1 5.1 0.00011 46.0 -4.0 114 252-367 164-303 (478)
100 PHA01083 hypothetical protein 23.3 1.2E+02 0.0025 28.2 3.9 10 2-11 19-28 (149)
101 PF14050 Nudc_N: N-terminal co 20.9 1.6E+02 0.0035 22.9 3.7 31 41-71 3-33 (62)
102 KOG3763 mRNA export factor TAP 20.2 26 0.00056 39.8 -0.9 14 558-571 216-229 (585)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-58 Score=544.21 Aligned_cols=361 Identities=32% Similarity=0.505 Sum_probs=289.9
Q ss_pred CCHHHHhh-cCC-eeEeCCCCCHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHH
Q 040774 1 RDRHVLES-IGS-KTIGIDVLSDEEAWTLFKKMAGDC--AENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWK 76 (1035)
Q Consensus 1 R~~~v~~~-~~~-~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~ 76 (1035)
|+++||.. |++ ..++++.|+++|||+||++.||+. ...+.++++|++||+||+|+|||++++|+.|+.|+++++|+
T Consensus 297 Rs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 297 RSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred ccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 89999998 898 999999999999999999999743 34456999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhcccccC-CCcccHHHHHHHHHHcCcccCCCcHHHHHHH
Q 040774 77 EALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMG-SPQASMQDLLKYAIGLGILKGVSTVEEARDK 155 (1035)
Q Consensus 77 ~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp-~~~~~~~~Li~~w~a~g~~~~~~~~~~~~~~ 155 (1035)
++.+.+.+...-++.++++.|+++|++|||+||.+ +|.||+|||+|| ||.|++++||.+|+||||+.+....+.+++.
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~ 455 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDV 455 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcc
Confidence 99998877634345667788999999999999965 999999999999 9999999999999999999876666778899
Q ss_pred HHHHHHHHHHhccccccc---CcceeehhhhHHHHHHHHHc-----ccceEEEecCCCCCCCCCC----CCccEEEecCC
Q 040774 156 VNALVDQLKDACLLLDGI---NSYWFSMHDVVSDVAISIAS-----RDYHVFTMRNEGDPRQWPD----KKCSRISLYDN 223 (1035)
Q Consensus 156 ~~~~~~~L~~~sl~~~~~---~~~~~~mHdl~~dla~~v~~-----~e~~~~~~~~~~~~~~~~~----~~~~~l~l~~~ 223 (1035)
|.+|+.+|+++++++..+ +..+|+|||+|||||.++|+ +|+.++ .++......+. ..+|++++.+|
T Consensus 456 G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv--~~~~~~~~~~~~~~~~~~rr~s~~~~ 533 (889)
T KOG4658|consen 456 GYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV--SDGVGLSEIPQVKSWNSVRRMSLMNN 533 (889)
T ss_pred hHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE--ECCcCccccccccchhheeEEEEecc
Confidence 999999999999999875 44689999999999999999 666443 32211222221 68899999999
Q ss_pred CCCCCCCCCCCCCcceeeccCCCC-CCCCCChhhhcCCCCccEEEccCC-cCccCcccccCCCCCcEEEcCCCCCCCccc
Q 040774 224 NISEIPQGWECPQLEFFYNFAPNN-SPLQIPDNIFIGMPKLKVLDFTRM-RLLSLPSSIHLLTDLRTLCLDSCQLEDIRV 301 (1035)
Q Consensus 224 ~~~~l~~~~~~~~Lr~L~l~~~~~-~~~~i~~~~f~~~~~Lr~L~Ls~~-~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~ 301 (1035)
.+..++....+++|++|.+.+ +. ....++..+|..++.||||||++| .+.++|++|++|.|||||+++++.
T Consensus 534 ~~~~~~~~~~~~~L~tLll~~-n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~------ 606 (889)
T KOG4658|consen 534 KIEHIAGSSENPKLRTLLLQR-NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG------ 606 (889)
T ss_pred chhhccCCCCCCccceEEEee-cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC------
Confidence 999999999999999999998 33 378899999999999999999976 466889988888877777666655
Q ss_pred ccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccC
Q 040774 302 IGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNAS 381 (1035)
Q Consensus 302 i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (1035)
++.+|.++++|.+|++|++..+..+..+ ++.+..|.+||+|.+...... .....
T Consensus 607 ----------------I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~---------~~~~~ 660 (889)
T KOG4658|consen 607 ----------------ISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS---------NDKLL 660 (889)
T ss_pred ----------------ccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccccc---------cchhh
Confidence 5566666666666666666666544444 333555777777766554321 11344
Q ss_pred HHhhcCCCCCCEEEEe
Q 040774 382 LVELKNLSRLTTLEIN 397 (1035)
Q Consensus 382 ~~~l~~L~~L~~L~l~ 397 (1035)
+.++.++++|+.+.+.
T Consensus 661 l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 661 LKELENLEHLENLSIT 676 (889)
T ss_pred HHhhhcccchhhheee
Confidence 5556666666655553
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.4e-48 Score=488.04 Aligned_cols=551 Identities=20% Similarity=0.286 Sum_probs=369.0
Q ss_pred CCHHHHhhcCC-eeEeCCCCCHHHHHHHHHHhhC-CCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHHH
Q 040774 1 RDRHVLESIGS-KTIGIDVLSDEEAWTLFKKMAG-DCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKEA 78 (1035)
Q Consensus 1 R~~~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~a~-~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~~ 78 (1035)
|+++|+..+++ ++|+++.|+++|||+||+++|+ +..+++++++++++||++|+|+|||++++|+.|+++ +.++|+++
T Consensus 332 rd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~ 410 (1153)
T PLN03210 332 KDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDM 410 (1153)
T ss_pred CcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHH
Confidence 78999999888 9999999999999999999996 444567899999999999999999999999999998 78999999
Q ss_pred HHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhcccccC-CCcccHHHHHHHHHHcCcccCCCcHHHHHHHHH
Q 040774 79 LRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMG-SPQASMQDLLKYAIGLGILKGVSTVEEARDKVN 157 (1035)
Q Consensus 79 l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp-~~~~~~~~Li~~w~a~g~~~~~~~~~~~~~~~~ 157 (1035)
+++++... +++|+++|++||++|+.+..|.||+|||+|| ++.+ +.|..|.|.+.+.. +.
T Consensus 411 l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-------~~--- 470 (1153)
T PLN03210 411 LPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-------NI--- 470 (1153)
T ss_pred HHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-------hh---
Confidence 99886532 3579999999999998743699999999999 5544 34666777654421 11
Q ss_pred HHHHHHHHhcccccccCcceeehhhhHHHHHHHHHcccce-----EEEecCCC--C--CCCCCCCCccEEEecCCCCCCC
Q 040774 158 ALVDQLKDACLLLDGINSYWFSMHDVVSDVAISIASRDYH-----VFTMRNEG--D--PRQWPDKKCSRISLYDNNISEI 228 (1035)
Q Consensus 158 ~~~~~L~~~sl~~~~~~~~~~~mHdl~~dla~~v~~~e~~-----~~~~~~~~--~--~~~~~~~~~~~l~l~~~~~~~l 228 (1035)
-++.|+++||++.. .+.++|||++|+||+.+++++.. -+.+.... + .......+++.+++....+.++
T Consensus 471 -~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 471 -GLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred -ChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 38899999999764 34699999999999999987631 00011000 0 0011124667777665554432
Q ss_pred --CC--CCCCCCcceeeccCCC-----CCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc
Q 040774 229 --PQ--GWECPQLEFFYNFAPN-----NSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI 299 (1035)
Q Consensus 229 --~~--~~~~~~Lr~L~l~~~~-----~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l 299 (1035)
.. ..++++|+.|.+.... .....+|+.+..-..+||+|++.++.+..+|..+ ...+|++|++.+|.++.+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence 11 1267778877775411 1223455554322356888888888888887776 467788888888877766
Q ss_pred -ccccCCCCCcEEecccC-cCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccc
Q 040774 300 -RVIGELRKLEILSLQAS-AIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIER 377 (1035)
Q Consensus 300 -~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 377 (1035)
..+..+++|++|+++++ .++.+|. ++.+++|++|++++|..+..+|.. ++++++|++|++++|...
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L---------- 694 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENL---------- 694 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCc----------
Confidence 66777888888888776 4666664 777788888888887777777776 778888888888776533
Q ss_pred cccCHHhhcCCCCCCEEEEeecC-CCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccc
Q 040774 378 SNASLVELKNLSRLTTLEINILD-AGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVE 456 (1035)
Q Consensus 378 ~~~~~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~ 456 (1035)
...+..+ ++++|+.|++++|. ...+|.. ..+|+
T Consensus 695 -~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--------------------------------------------~~nL~ 728 (1153)
T PLN03210 695 -EILPTGI-NLKSLYRLNLSGCSRLKSFPDI--------------------------------------------STNIS 728 (1153)
T ss_pred -CccCCcC-CCCCCCEEeCCCCCCccccccc--------------------------------------------cCCcC
Confidence 1222222 56777777777664 2222211 13455
Q ss_pred eeecccccCccccccccCccccCCccEEEeecCCccceecc---CCccccCcCcccceeecccccccccccccccccCCC
Q 040774 457 YLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVD---PLQVRCGAFPMLESVVLQSLINLERICHGQLRAESF 533 (1035)
Q Consensus 457 ~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l 533 (1035)
.|++.++. ...+ |.. ..+++|++|.+.++........ ........+++|+.|.+.+++.+..++. ..+.+
T Consensus 729 ~L~L~~n~-i~~l-P~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~---si~~L 801 (1153)
T PLN03210 729 WLDLDETA-IEEF-PSN--LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS---SIQNL 801 (1153)
T ss_pred eeecCCCc-cccc-ccc--ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccCh---hhhCC
Confidence 55555433 2222 211 1356677776665442111000 0000122346788888887776666532 34567
Q ss_pred CCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccc
Q 040774 534 CNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVA 613 (1035)
Q Consensus 534 ~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~ 613 (1035)
++|+.|++.+|.+++.+|... .+++|+.|++++|..+.. ++. ..++|+.|+++++.++
T Consensus 802 ~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~----~p~---------------~~~nL~~L~Ls~n~i~ 859 (1153)
T PLN03210 802 HKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRT----FPD---------------ISTNISDLNLSRTGIE 859 (1153)
T ss_pred CCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCcccc----ccc---------------cccccCEeECCCCCCc
Confidence 788888888888887776532 577788888888765321 000 1356778888777666
Q ss_pred cccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEecccccccc
Q 040774 614 KIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEV 671 (1035)
Q Consensus 614 ~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l 671 (1035)
.+.... ..+++|+.|++.+|.+++.++.. ...+++|+.+++++|.++..+
T Consensus 860 ~iP~si------~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 860 EVPWWI------EKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred cChHHH------hcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCcccccc
Confidence 553221 15667888888888888776543 356778888888888776544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.8e-33 Score=356.85 Aligned_cols=293 Identities=22% Similarity=0.266 Sum_probs=201.6
Q ss_pred CCccEEEecCCCCCC-CCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCcc-CcccccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISE-IPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS-LPSSIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~-l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~-lp~~i~~L~~Lr~L 289 (1035)
.+++.+++++|.+.. ++..+ .+++|++|++++ +...+.+|.++|..+++||+|++++|.+.. +|. +.+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~-n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSN-NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCC-CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 478999999998764 44333 789999999998 566678999998899999999999999874 454 568899999
Q ss_pred EcCCCCCCC-c-ccccCCCCCcEEecccCcCC-cchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 290 CLDSCQLED-I-RVIGELRKLEILSLQASAIE-QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 290 ~L~~~~l~~-l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
++++|.+.. + ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNL 224 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCcc
Confidence 999999874 3 77999999999999999876 78999999999999999999855566766 89999999999999988
Q ss_pred ceeeccccccccccCHHhhcCCCCCCEEEEeecCCC-CCCCccccccccEEEEEEccccccCCcccccchhhhccCCcee
Q 040774 367 EWEVLGLSIERSNASLVELKNLSRLTTLEINILDAG-ILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRIC 445 (1035)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~ 445 (1035)
. +..+..++++++|++|++++|... .+|..
T Consensus 225 ~-----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-------------------------------------- 255 (968)
T PLN00113 225 S-----------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-------------------------------------- 255 (968)
T ss_pred C-----------CcCChhHhcCCCCCEEECcCceeccccChh--------------------------------------
Confidence 6 456678899999999999988743 33332
Q ss_pred eccccCccccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccc
Q 040774 446 LGEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICH 525 (1035)
Q Consensus 446 ~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 525 (1035)
+.++++|+.|+++++.........+ ..+++|++|++++|.- .+..+.....+++|+.|++.++.-....
T Consensus 256 ---l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~n~l----~~~~p~~~~~l~~L~~L~l~~n~~~~~~-- 324 (968)
T PLN00113 256 ---LGNLKNLQYLFLYQNKLSGPIPPSI--FSLQKLISLDLSDNSL----SGEIPELVIQLQNLEILHLFSNNFTGKI-- 324 (968)
T ss_pred ---HhCCCCCCEEECcCCeeeccCchhH--hhccCcCEEECcCCee----ccCCChhHcCCCCCcEEECCCCccCCcC--
Confidence 3344556666665543222222222 3466677777766651 1111113344556666666554321111
Q ss_pred cccccCCCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCc
Q 040774 526 GQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVE 572 (1035)
Q Consensus 526 ~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 572 (1035)
+.....+++|+.|.+.+|.-...+|. .+..+++|+.|++++|..
T Consensus 325 -~~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 325 -PVALTSLPRLQVLQLWSNKFSGEIPK--NLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred -ChhHhcCCCCCEEECcCCCCcCcCCh--HHhCCCCCcEEECCCCee
Confidence 11123455666666665443222322 234455666666665543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-33 Score=355.45 Aligned_cols=531 Identities=19% Similarity=0.168 Sum_probs=344.4
Q ss_pred CCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-cCccccc-CCCCCcEEEcCCCCCCCcccccCCCCCcEEe
Q 040774 235 PQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-SLPSSIH-LLTDLRTLCLDSCQLEDIRVIGELRKLEILS 312 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-~lp~~i~-~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 312 (1035)
.+++.|++++ ++..+.++. .|..+++|++|++++|.+. .+|..+. .+++||+|++++|.+...-..+.+.+|++|+
T Consensus 69 ~~v~~L~L~~-~~i~~~~~~-~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSG-KNISGKISS-AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLD 146 (968)
T ss_pred CcEEEEEecC-CCccccCCh-HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEE
Confidence 4789999998 444455544 5789999999999999997 6888765 9999999999999987653346799999999
Q ss_pred cccCcCC-cchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCC
Q 040774 313 LQASAIE-QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRL 391 (1035)
Q Consensus 313 L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 391 (1035)
+++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|.+. +..+..++++++|
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~~~p~~l~~l~~L 214 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASNQLV-----------GQIPRELGQMKSL 214 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCCCCc-----------CcCChHHcCcCCc
Confidence 9999887 78999999999999999999855567766 999999999999999886 4567889999999
Q ss_pred CEEEEeecCCC-CCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeecccccCccccc
Q 040774 392 TTLEINILDAG-ILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVL 470 (1035)
Q Consensus 392 ~~L~l~~~~~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l 470 (1035)
+.|++++|... .+|.. +.++++|+.|+++++.......
T Consensus 215 ~~L~L~~n~l~~~~p~~-----------------------------------------l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYE-----------------------------------------IGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred cEEECcCCccCCcCChh-----------------------------------------HhcCCCCCEEECcCceeccccC
Confidence 99999988743 33332 3455778888888765433333
Q ss_pred cccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEEeecCCCccc
Q 040774 471 HDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKLKNL 550 (1035)
Q Consensus 471 ~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l 550 (1035)
..+ +.+++|++|+++++.- .+..+.....+++|++|++.++.-...++ .....+++|+.|++.++......
T Consensus 254 ~~l--~~l~~L~~L~L~~n~l----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~l~~n~~~~~~ 324 (968)
T PLN00113 254 SSL--GNLKNLQYLFLYQNKL----SGPIPPSIFSLQKLISLDLSDNSLSGEIP---ELVIQLQNLEILHLFSNNFTGKI 324 (968)
T ss_pred hhH--hCCCCCCEEECcCCee----eccCchhHhhccCcCEEECcCCeeccCCC---hhHcCCCCCcEEECCCCccCCcC
Confidence 333 5688999999988862 22222245567888899888764322221 12346778888888876544333
Q ss_pred CChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCccccccccCCc
Q 040774 551 FSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAISCSVQN 630 (1035)
Q Consensus 551 ~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~ 630 (1035)
+. .+..+++|+.|++.+|..... +...+ ..+++|+.|++++|.+........ ..+++
T Consensus 325 ~~--~~~~l~~L~~L~L~~n~l~~~---~p~~l-------------~~~~~L~~L~Ls~n~l~~~~p~~~-----~~~~~ 381 (968)
T PLN00113 325 PV--ALTSLPRLQVLQLWSNKFSGE---IPKNL-------------GKHNNLTVLDLSTNNLTGEIPEGL-----CSSGN 381 (968)
T ss_pred Ch--hHhcCCCCCEEECcCCCCcCc---CChHH-------------hCCCCCcEEECCCCeeEeeCChhH-----hCcCC
Confidence 32 356788888888888875211 11111 226778888888876653321111 13567
Q ss_pred ccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCcccccccCCccc
Q 040774 631 LTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYPGVHTL 710 (1035)
Q Consensus 631 L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~ 710 (1035)
|+.|++.+| .+....|. .+..+++|+.|++++|.....++ .....+++|+.|+++++.-...++... .
T Consensus 382 L~~L~l~~n-~l~~~~p~-~~~~~~~L~~L~L~~n~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~ 449 (968)
T PLN00113 382 LFKLILFSN-SLEGEIPK-SLGACRSLRRVRLQDNSFSGELP--------SEFTKLPLVYFLDISNNNLQGRINSRK--W 449 (968)
T ss_pred CCEEECcCC-EecccCCH-HHhCCCCCCEEECcCCEeeeECC--------hhHhcCCCCCEEECcCCcccCccChhh--c
Confidence 888888887 34433333 24677888888888876332221 233456777888887754222222211 2
Q ss_pred CCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccCCceeEecccccCccccccCCCCcccC
Q 040774 711 ECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFPDYLS 790 (1035)
Q Consensus 711 ~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 790 (1035)
.+++|+.|++++|.....+|.. ...++|+.|++++|. +....+..+ ..+
T Consensus 450 ~l~~L~~L~L~~n~~~~~~p~~----------------------------~~~~~L~~L~ls~n~-l~~~~~~~~--~~l 498 (968)
T PLN00113 450 DMPSLQMLSLARNKFFGGLPDS----------------------------FGSKRLENLDLSRNQ-FSGAVPRKL--GSL 498 (968)
T ss_pred cCCCCcEEECcCceeeeecCcc----------------------------cccccceEEECcCCc-cCCccChhh--hhh
Confidence 3677777777777644433210 113567777777655 322222212 345
Q ss_pred CCccEEEeecCCCcCCCchHHhhcCCceEEEEEeCccceecccCCccccccccccccccccccccccCceeeeccCCCcc
Q 040774 791 NKLKVLAIENDESEVLPPDLLERFHNLVNLELAYGSYKELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWEQNSKL 870 (1035)
Q Consensus 791 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i~~~~~~~ 870 (1035)
++|+.|++++|.+....+..+.++++|+.|+|+.|.++.. +|..+..+++|+.|++++|.-... .|..
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~------~p~~~~~l~~L~~L~Ls~N~l~~~------~p~~ 566 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ------IPASFSEMPVLSQLDLSQNQLSGE------IPKN 566 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCccccc------CChhHhCcccCCEEECCCCccccc------CChh
Confidence 6677777755544433334456667777777776666432 233445566777777776653322 2555
Q ss_pred cccccccceEEeecccCccccCCCcccccCccEEEecc
Q 040774 871 NTVFQNLETLSAHFCLNLTNLMPSSASFRCLKELRVCA 908 (1035)
Q Consensus 871 ~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~L~~L~i~~ 908 (1035)
+..+++|+.|++++|+-...+|.. +.+..+....+.+
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~ 603 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAG 603 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcC
Confidence 666667777777776655555532 3333443333333
No 5
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=1.3e-25 Score=250.77 Aligned_cols=143 Identities=29% Similarity=0.380 Sum_probs=120.0
Q ss_pred EEecCCCCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCC
Q 040774 218 ISLYDNNISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQL 296 (1035)
Q Consensus 218 l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 296 (1035)
++++...++.||..+ ....+..|.+.. +.....|-.+.++.-+|+.||+++|.+..+|..|..+.+|+.|+++.|.|
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~--N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRR--NSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccc--cccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhH
Confidence 455556666666543 333466777665 66666666666777779999999999999999999999999999999999
Q ss_pred CCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCC
Q 040774 297 EDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 364 (1035)
Q Consensus 297 ~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 364 (1035)
... .+++++++|++|.|.+|.+..+|.++..+++|++|++++|. +..+|.- +..++.+..+..++|
T Consensus 81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 876 88999999999999999999999999999999999999998 8888886 788888888888887
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=7.5e-27 Score=236.19 Aligned_cols=176 Identities=26% Similarity=0.338 Sum_probs=120.3
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEc
Q 040774 213 KKCSRISLYDNNISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 291 (1035)
.++..+.+++|.+..+..+. .+..+.++.++. +...++|+.+ +++..+..|+.++|.+..+|+.++.+..|+.|+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~--n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHD--NKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEecc--chhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 45566667777766554443 566677777765 5666666665 5677777777777777777777777777777777
Q ss_pred CCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceee
Q 040774 292 DSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEV 370 (1035)
Q Consensus 292 ~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 370 (1035)
++|.+..+ ++++.+..|..|+..+|++.++|.+++++.+|..|++.+|. ++.+|++.+. ++.|++|+...|-+.
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~--- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE--- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh---
Confidence 77776665 77777777777777777777777777777777777777776 7777776443 777777776665543
Q ss_pred ccccccccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 371 LGLSIERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
..+.+++.+..|.-|++..|++..+|
T Consensus 197 ---------tlP~~lg~l~~L~~LyL~~Nki~~lP 222 (565)
T KOG0472|consen 197 ---------TLPPELGGLESLELLYLRRNKIRFLP 222 (565)
T ss_pred ---------cCChhhcchhhhHHHHhhhcccccCC
Confidence 55666666666666666665544433
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2.9e-22 Score=212.35 Aligned_cols=368 Identities=20% Similarity=0.242 Sum_probs=223.4
Q ss_pred CccEEEecCCCCCCCCC----CCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEE
Q 040774 214 KCSRISLYDNNISEIPQ----GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTL 289 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~----~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L 289 (1035)
..+-++.+.+.+..+.. .+-.+..++|+++. +....+.-..|.++++|+.+.+..|.++.+|.-.....||+.|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~Ldlsn--Nkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSN--NKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKL 130 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccc--cccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEE
Confidence 34455555555554321 12234567788775 7777777777788888888888888888888777777778888
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
+|.+|.|..+ +.+.-+..||.||||.|.|+.+|.. +..=.++++|+|++|. ++.+..+.|..+.+|-+|.+++|.+
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNri 209 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRI 209 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcc
Confidence 8888888877 6778888888888888888877643 5555778888888887 7777777788888888888888887
Q ss_pred ceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceee
Q 040774 367 EWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICL 446 (1035)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~ 446 (1035)
+ ..-+..+++|++|+.|++..|.+..+...
T Consensus 210 t-----------tLp~r~Fk~L~~L~~LdLnrN~irive~l--------------------------------------- 239 (873)
T KOG4194|consen 210 T-----------TLPQRSFKRLPKLESLDLNRNRIRIVEGL--------------------------------------- 239 (873)
T ss_pred c-----------ccCHHHhhhcchhhhhhccccceeeehhh---------------------------------------
Confidence 6 44556777888888888877654322111
Q ss_pred ccccCccccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeeccccccccccccc
Q 040774 447 GEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHG 526 (1035)
Q Consensus 447 ~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 526 (1035)
.+.|+++|+.|.|..+.-. -+..-.+.++.++++|++..+. +..+. ....-++.+|+.|++++ +.++.+...
T Consensus 240 -tFqgL~Sl~nlklqrN~I~--kL~DG~Fy~l~kme~l~L~~N~-l~~vn---~g~lfgLt~L~~L~lS~-NaI~rih~d 311 (873)
T KOG4194|consen 240 -TFQGLPSLQNLKLQRNDIS--KLDDGAFYGLEKMEHLNLETNR-LQAVN---EGWLFGLTSLEQLDLSY-NAIQRIHID 311 (873)
T ss_pred -hhcCchhhhhhhhhhcCcc--cccCcceeeecccceeecccch-hhhhh---cccccccchhhhhccch-hhhheeecc
Confidence 1344444444444432211 0111111234555555555544 11111 11333455555555554 222322111
Q ss_pred ccccCCCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceee
Q 040774 527 QLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLE 606 (1035)
Q Consensus 527 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~ 606 (1035)
.....++|++|++++ +.++.+++. .+..+..|++|.++++..-. +.+ +....+.+|++|+
T Consensus 312 --~WsftqkL~~LdLs~-N~i~~l~~~-sf~~L~~Le~LnLs~Nsi~~--------l~e--------~af~~lssL~~Ld 371 (873)
T KOG4194|consen 312 --SWSFTQKLKELDLSS-NRITRLDEG-SFRVLSQLEELNLSHNSIDH--------LAE--------GAFVGLSSLHKLD 371 (873)
T ss_pred --hhhhcccceeEeccc-cccccCChh-HHHHHHHhhhhcccccchHH--------HHh--------hHHHHhhhhhhhc
Confidence 112345677777766 555555544 34567777777777776321 111 1122356778888
Q ss_pred ccccccccccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccc
Q 040774 607 LRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCP 666 (1035)
Q Consensus 607 L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 666 (1035)
|++|.+.-.-.+ ....|. .+++|++|.+.++ +++.++.-. +.++++||+|++.++.
T Consensus 372 Lr~N~ls~~IED-aa~~f~-gl~~LrkL~l~gN-qlk~I~krA-fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 372 LRSNELSWCIED-AAVAFN-GLPSLRKLRLTGN-QLKSIPKRA-FSGLEALEHLDLGDNA 427 (873)
T ss_pred CcCCeEEEEEec-chhhhc-cchhhhheeecCc-eeeecchhh-hccCcccceecCCCCc
Confidence 877754422122 112222 4777888888877 677765433 4677888888887765
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.86 E-value=4.2e-23 Score=218.64 Aligned_cols=243 Identities=21% Similarity=0.222 Sum_probs=181.0
Q ss_pred CCccEEEecCCCCCCCCCC--CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQG--WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L 289 (1035)
...+.+++++|.+.++.-. .++++|+.+.+.. +....||... ....+|..|+|.+|.|+++ .+++..+..||.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~--N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK--NELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeecc--chhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 6788899999999866433 4899999999986 8888898732 3455699999999999988 5678889999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
||+.|.|+.+ ++|..=.++++|+|++|+|+.+-.+ |..|.+|-+|.|+.|. ++.+|...|.+|++|+.|++..|.+
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccce
Confidence 9999999987 7888888999999999999977644 8889999999999998 9999998899999999999999988
Q ss_pred ceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCcc--ccccccEEEEEEccccccCCcccccchhhhccCCce
Q 040774 367 EWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGF--FSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRI 444 (1035)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i 444 (1035)
. ...--.+..|++|+.|.+..|++..+..++ .+.+++.+.+..+.... +
T Consensus 234 r-----------ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~------------------v 284 (873)
T KOG4194|consen 234 R-----------IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA------------------V 284 (873)
T ss_pred e-----------eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh------------------h
Confidence 6 222346778889999999998877776665 45556655554332110 1
Q ss_pred eeccccCccccceeecccccCccccccccCccccCCccEEEeecCC
Q 040774 445 CLGEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNS 490 (1035)
Q Consensus 445 ~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~ 490 (1035)
...+..|+..|+.|+++.+.-..--...| +..++|+.|+++.+.
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~W--sftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSW--SFTQKLKELDLSSNR 328 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchh--hhcccceeEeccccc
Confidence 11114555666666666543222222333 335666666666554
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=8.9e-21 Score=240.05 Aligned_cols=316 Identities=19% Similarity=0.263 Sum_probs=204.9
Q ss_pred cCCcceeeccccccccccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccc
Q 040774 599 LPKLEVLELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGV 678 (1035)
Q Consensus 599 ~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 678 (1035)
+.+|+.|++.++.+..+|.... .+++|+.|++++|..++.+|. +..+++|+.|++++|..+..++.
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~------~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~----- 675 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVH------SLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPS----- 675 (1153)
T ss_pred ccCCcEEECcCccccccccccc------cCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccch-----
Confidence 5788999999988888886543 577899999999888877664 36788999999999988766653
Q ss_pred cCCCceeccccCeeecccCCcccccccCCcccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccc
Q 040774 679 EADPSFVFPRLTILKLHYLPELRAFYPGVHTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFL 758 (1035)
Q Consensus 679 ~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 758 (1035)
....+++|+.|++++|.+++.++... .+++|+.|.+++|..+..+|.
T Consensus 676 ---si~~L~~L~~L~L~~c~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~--------------------------- 722 (1153)
T PLN03210 676 ---SIQYLNKLEDLDMSRCENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD--------------------------- 722 (1153)
T ss_pred ---hhhccCCCCEEeCCCCCCcCccCCcC---CCCCCCEEeCCCCCCcccccc---------------------------
Confidence 34567889999999999998888754 378999999999988877652
Q ss_pred cccccCCceeEecccccCccccccCCCCcccCCCccEEEeecCCC-------cCCCchHHhhcCCceEEEEE-eCcccee
Q 040774 759 VEKVLPSLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDES-------EVLPPDLLERFHNLVNLELA-YGSYKEL 830 (1035)
Q Consensus 759 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~l~~l~~L~~L~i~-c~~l~~l 830 (1035)
..++|+.|+++++. ++.++.. ..+++|+.|.+++... ..++......+++|+.|+++ |+.+.++
T Consensus 723 ---~~~nL~~L~L~~n~-i~~lP~~----~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l 794 (1153)
T PLN03210 723 ---ISTNISWLDLDETA-IEEFPSN----LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL 794 (1153)
T ss_pred ---ccCCcCeeecCCCc-ccccccc----ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCcccc
Confidence 24566777776443 4444321 1345666666633111 11122222334667777777 5555544
Q ss_pred cccCCccccccccccccccccccccccCceeeeccCCCcccccccccceEEeecccCccccCCCcccccCccEEEeccCC
Q 040774 831 FSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWEQNSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLKELRVCACE 910 (1035)
Q Consensus 831 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~L~~L~i~~c~ 910 (1035)
|..++++++|+.|++++|.+++. + |.+. .+++|+.|++++|.++..+|.. .++|+.|++++ +
T Consensus 795 -------P~si~~L~~L~~L~Ls~C~~L~~--L----P~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~-n 856 (1153)
T PLN03210 795 -------PSSIQNLHKLEHLEIENCINLET--L----PTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSR-T 856 (1153)
T ss_pred -------ChhhhCCCCCCEEECCCCCCcCe--e----CCCC-CccccCEEECCCCCcccccccc---ccccCEeECCC-C
Confidence 33455677777777777777776 3 3332 4677777777777777766543 45677777744 4
Q ss_pred CCcchhhhhhhhcccccceEeeccccccceeeccccccCCCCccccccccccccccccccceeccCCc-----------e
Q 040774 911 HLMNLVASSAAKNLVQLVRMTVRECNKITELVVASEGDAANDEIIFPKLMFLKLHRLQSLTTFCSANY-----------T 979 (1035)
Q Consensus 911 ~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~-----------~ 979 (1035)
+++.+ +.....+++|++|++++|++++.+ +.. ...+++|+.+.+++|++|+.++.... .
T Consensus 857 ~i~~i--P~si~~l~~L~~L~L~~C~~L~~l-~~~-------~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~ 926 (1153)
T PLN03210 857 GIEEV--PWWIEKFSNLSFLDMNGCNNLQRV-SLN-------ISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIH 926 (1153)
T ss_pred CCccC--hHHHhcCCCCCEEECCCCCCcCcc-Ccc-------cccccCCCeeecCCCcccccccCCCCchhhhhhccccc
Confidence 55655 223466777777777777777776 222 23466777777777777765432110 0
Q ss_pred eeCCccCEEEEecCCCcc
Q 040774 980 FKFPSLFYLSVRNCPKMK 997 (1035)
Q Consensus 980 ~~~~~L~~L~i~~C~~l~ 997 (1035)
..+|+...+.+.+|.++.
T Consensus 927 ~~~p~~~~l~f~nC~~L~ 944 (1153)
T PLN03210 927 SKLPSTVCINFINCFNLD 944 (1153)
T ss_pred ccCCchhccccccccCCC
Confidence 123444555666776654
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=3.9e-23 Score=231.13 Aligned_cols=481 Identities=21% Similarity=0.219 Sum_probs=250.7
Q ss_pred EEccCCcCccCcccccCCCCCcEEEcCCCCCCC-c-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCcccc
Q 040774 266 LDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLED-I-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLK 343 (1035)
Q Consensus 266 L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~ 343 (1035)
+|++++.+.-+|..+-.-.++..|+++.|.+-. + +.+.+-.+|+.||+++|.+..+|..|..+.+|+.|+++.|. +.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-Hh
Confidence 455555666666655555556666666665332 2 44444555777777777777777777777777777777665 66
Q ss_pred ccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCcc-ccccccEEEEEEcc
Q 040774 344 VIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGF-FSRKLERYRIVVGD 422 (1035)
Q Consensus 344 ~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~~ 422 (1035)
.+|.. ++++.+|++|.+.+|... ..+.++..+++|+.|++++|....+|.-+ ....++.+...
T Consensus 82 ~vp~s-~~~~~~l~~lnL~~n~l~------------~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s--- 145 (1081)
T KOG0618|consen 82 SVPSS-CSNMRNLQYLNLKNNRLQ------------SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAAS--- 145 (1081)
T ss_pred hCchh-hhhhhcchhheeccchhh------------cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhh---
Confidence 66654 667777777777766654 55666666777777777777666555432 01100000000
Q ss_pred ccccCCcccccchhhhccCCceeeccccCccccceeecccccCccccccccCccccCCccE-EEeecCCccceeccCCcc
Q 040774 423 TWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKH-LNVQNNSNFLCIVDPLQV 501 (1035)
Q Consensus 423 ~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~-L~l~~~~~l~~~~~~~~~ 501 (1035)
++.... ..|...++.+++........++.. .-+++. |++..+.-
T Consensus 146 -------------------~N~~~~-~lg~~~ik~~~l~~n~l~~~~~~~-----i~~l~~~ldLr~N~~---------- 190 (1081)
T KOG0618|consen 146 -------------------NNEKIQ-RLGQTSIKKLDLRLNVLGGSFLID-----IYNLTHQLDLRYNEM---------- 190 (1081)
T ss_pred -------------------cchhhh-hhccccchhhhhhhhhcccchhcc-----hhhhheeeecccchh----------
Confidence 000000 000011222222211111111111 111222 33333330
Q ss_pred ccCcCcccceeecccccccccccccccccCCCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhc
Q 040774 502 RCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILE 581 (1035)
Q Consensus 502 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~ 581 (1035)
..+++. .+++|+.|.... .++..+ .-.-++|+.|+..+|+.....
T Consensus 191 --------~~~dls----------------~~~~l~~l~c~r-n~ls~l-----~~~g~~l~~L~a~~n~l~~~~----- 235 (1081)
T KOG0618|consen 191 --------EVLDLS----------------NLANLEVLHCER-NQLSEL-----EISGPSLTALYADHNPLTTLD----- 235 (1081)
T ss_pred --------hhhhhh----------------hccchhhhhhhh-cccceE-----EecCcchheeeeccCcceeec-----
Confidence 011112 222222222211 111111 112355666666666642110
Q ss_pred cccccccCccccccccccCCcceeeccccccccccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEE
Q 040774 582 NENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLE 661 (1035)
Q Consensus 582 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~ 661 (1035)
......+|+.++++.+++..+..... ...+|+.+.+..+ .+..++.. .....+|+.|.
T Consensus 236 -------------~~p~p~nl~~~dis~n~l~~lp~wi~------~~~nle~l~~n~N-~l~~lp~r--i~~~~~L~~l~ 293 (1081)
T KOG0618|consen 236 -------------VHPVPLNLQYLDISHNNLSNLPEWIG------ACANLEALNANHN-RLVALPLR--ISRITSLVSLS 293 (1081)
T ss_pred -------------cccccccceeeecchhhhhcchHHHH------hcccceEecccch-hHHhhHHH--HhhhhhHHHHH
Confidence 00113467777777775554431111 3456777777766 44444322 24456677776
Q ss_pred EeccccccccccccccccCCCceeccccCeeecccCCcccccccCCcccCCCCcceeeeecCCccccccccccccccccc
Q 040774 662 ICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYPGVHTLECPMLTKLEVYICDKLESFTSELYSLHENNE 741 (1035)
Q Consensus 662 i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~ 741 (1035)
+..|. ++.++. ....+.+|++|++.. .++..++.........+|+.|.++ |.++..+|. .
T Consensus 294 ~~~ne-l~yip~--------~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~-------~-- 353 (1081)
T KOG0618|consen 294 AAYNE-LEYIPP--------FLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPS-------Y-- 353 (1081)
T ss_pred hhhhh-hhhCCC--------cccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhh-hcccccccc-------c--
Confidence 66654 444443 223366777888777 356665552221111223444333 223333321 0
Q ss_pred CCccccCCCCCCCCccccccccCCceeEecccccCccccccCCCCcccCCCccEEEeecCCCcCCCchHHhhcCCceEEE
Q 040774 742 EGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLE 821 (1035)
Q Consensus 742 ~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 821 (1035)
-+...+.|+.|++.++. +++-.. -+..++.+|+.|++++|.+..+|...+.++..|++|+
T Consensus 354 -----------------~e~~~~~Lq~LylanN~-Ltd~c~--p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 354 -----------------EENNHAALQELYLANNH-LTDSCF--PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred -----------------cchhhHHHHHHHHhcCc-ccccch--hhhccccceeeeeecccccccCCHHHHhchHHhHHHh
Confidence 11447889999999655 433211 1235778999999999999999999999999999999
Q ss_pred EEeCccceecccCCccccccccccccccccccccccCceeeeccCCCcccccccccceEEeecccCccccCCCcccccCc
Q 040774 822 LAYGSYKELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWEQNSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCL 901 (1035)
Q Consensus 822 i~c~~l~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~L 901 (1035)
+++|+++.++ ..+..+..|++|...+ ..+.++| ....++.|
T Consensus 414 LSGNkL~~Lp-------~tva~~~~L~tL~ahs-------------------------------N~l~~fP-e~~~l~qL 454 (1081)
T KOG0618|consen 414 LSGNKLTTLP-------DTVANLGRLHTLRAHS-------------------------------NQLLSFP-ELAQLPQL 454 (1081)
T ss_pred cccchhhhhh-------HHHHhhhhhHHHhhcC-------------------------------Cceeech-hhhhcCcc
Confidence 9999998874 2334445555544332 2333444 45566777
Q ss_pred cEEEeccCCCCcchhhhhhhhcccccceEeecccc
Q 040774 902 KELRVCACEHLMNLVASSAAKNLVQLVRMTVRECN 936 (1035)
Q Consensus 902 ~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 936 (1035)
+.+++ +|++|..+..+.... -++|++|++++-.
T Consensus 455 ~~lDl-S~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 455 KVLDL-SCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred eEEec-ccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 77777 777777653222211 1577777777733
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=5.6e-23 Score=218.69 Aligned_cols=172 Identities=22% Similarity=0.325 Sum_probs=145.4
Q ss_pred CccEEEecCCCCC--CCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEE
Q 040774 214 KCSRISLYDNNIS--EIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLC 290 (1035)
Q Consensus 214 ~~~~l~l~~~~~~--~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 290 (1035)
=+|-+++++|.+. .+|.++ .++.++.|.+.. .....+|+.+ +++.+|..|.+++|++.++-..++.|+.||.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr--t~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR--TKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEech--hhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 4566778888776 577776 688888888876 6677888875 889999999999999988888888899999999
Q ss_pred cCCCCCC--Cc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 291 LDSCQLE--DI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 291 L~~~~l~--~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
++.|+++ ++ +.|.+|..|.+||||+|++++.|..+.+-+++-.|++++|. +..+|...+.+|+.|-.|++++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhh
Confidence 9999876 44 88889999999999999999999999999999999999987 88899888888999999999998875
Q ss_pred eeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 368 WEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
..+..+..|.+|++|.+++|..
T Consensus 164 ------------~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 164 ------------MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ------------hcCHHHHHHhhhhhhhcCCChh
Confidence 6777888888999999988863
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=8.8e-23 Score=217.24 Aligned_cols=182 Identities=24% Similarity=0.351 Sum_probs=152.9
Q ss_pred CCccEEEecCCCCCCCCCC-CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEc
Q 040774 213 KKCSRISLYDNNISEIPQG-WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 291 (1035)
.++.|+++.+|++..+-.. ..++.||++++..++-....||+++| +++-|.+||||+|.+...|..+.+.+++-+|+|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 6888999999998765443 48899999999884445667999998 799999999999999999999999999999999
Q ss_pred CCCCCCCc--ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcccee
Q 040774 292 DSCQLEDI--RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWE 369 (1035)
Q Consensus 292 ~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 369 (1035)
++|+|..| +-+-+|..|-+||||+|++..+|+.+..|.+||+|++++|. +..+.-.-+..|++|++|.+++.+-+
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP-L~hfQLrQLPsmtsL~vLhms~TqRT-- 210 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP-LNHFQLRQLPSMTSLSVLHMSNTQRT-- 210 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh-hhHHHHhcCccchhhhhhhcccccch--
Confidence 99999987 66789999999999999999999999999999999999997 54443333556888999999887655
Q ss_pred eccccccccccCHHhhcCCCCCCEEEEeecCCCCCCC
Q 040774 370 VLGLSIERSNASLVELKNLSRLTTLEINILDAGILPS 406 (1035)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 406 (1035)
....+..+..+.||+.++++.|....+|.
T Consensus 211 --------l~N~Ptsld~l~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 211 --------LDNIPTSLDDLHNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred --------hhcCCCchhhhhhhhhccccccCCCcchH
Confidence 13456778888899999998887666655
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=4.5e-24 Score=216.20 Aligned_cols=214 Identities=25% Similarity=0.342 Sum_probs=118.8
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
...++.+++|++.++|..+ ...+++.++++. +...++++++ +.+..|..|+..+|++.++|.+++++..|..|++.
T Consensus 92 ~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~--n~~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~ 168 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSELPEQIGSLISLVKLDCSS--NELKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLE 168 (565)
T ss_pred HHHHhhcccchHhhccHHHhhhhhhhhhhccc--cceeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhcc
Confidence 3444555555555555433 445555555554 4445555554 34555555555555555555555555555555555
Q ss_pred CCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeec
Q 040774 293 SCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 293 ~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
+|.++.+ +..-+++.|++||...|-++.+|+.++.|.+|..|++..|+ +..+|+ |+....|.+|+++.|++.
T Consensus 169 ~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPe--f~gcs~L~Elh~g~N~i~---- 241 (565)
T KOG0472|consen 169 GNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPE--FPGCSLLKELHVGENQIE---- 241 (565)
T ss_pred ccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCC--CCccHHHHHHHhcccHHH----
Confidence 5555544 33333555555555555555555555555555555555554 555552 555555555555555554
Q ss_pred cccccccccCHHh-hcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeecccc
Q 040774 372 GLSIERSNASLVE-LKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWR 450 (1035)
Q Consensus 372 ~~~~~~~~~~~~~-l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~ 450 (1035)
..+++ +++++++..|++..|+...+|.++ .
T Consensus 242 --------~lpae~~~~L~~l~vLDLRdNklke~Pde~-----------------------------------------c 272 (565)
T KOG0472|consen 242 --------MLPAEHLKHLNSLLVLDLRDNKLKEVPDEI-----------------------------------------C 272 (565)
T ss_pred --------hhHHHHhcccccceeeeccccccccCchHH-----------------------------------------H
Confidence 33333 346777777777777766666543 1
Q ss_pred CccccceeecccccCccccccccCccccCCccEEEeecCC
Q 040774 451 GMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNS 490 (1035)
Q Consensus 451 ~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~ 490 (1035)
-+++|++|+++++. +....+.+ +.+ +|+.|.+.|++
T Consensus 273 lLrsL~rLDlSNN~-is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 273 LLRSLERLDLSNND-ISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred HhhhhhhhcccCCc-cccCCccc--ccc-eeeehhhcCCc
Confidence 22466777777643 33334444 445 77777777776
No 14
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.82 E-value=6.9e-21 Score=206.07 Aligned_cols=143 Identities=36% Similarity=0.585 Sum_probs=116.7
Q ss_pred CCHHHHhhcCC--eeEeCCCCCHHHHHHHHHHhhCCC--CCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHH
Q 040774 1 RDRHVLESIGS--KTIGIDVLSDEEAWTLFKKMAGDC--AENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWK 76 (1035)
Q Consensus 1 R~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~ 76 (1035)
|+.+|+..++. ..|++++|+.+||++||++.|+.. ..++.+++++++|+++|+|+|||++++|+.|+.+.+..+|+
T Consensus 137 R~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~ 216 (287)
T PF00931_consen 137 RDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWE 216 (287)
T ss_dssp SCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 77888887764 899999999999999999999643 34567788999999999999999999999997776788999
Q ss_pred HHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhcccccC-CCcccHHHHHHHHHHcCcccC
Q 040774 77 EALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMG-SPQASMQDLLKYAIGLGILKG 145 (1035)
Q Consensus 77 ~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp-~~~~~~~~Li~~w~a~g~~~~ 145 (1035)
++++++..... +..+....+..++.+||+.||.+ +|+||+|||+|| ++.|+++.|+++|+|+|||+.
T Consensus 217 ~~~~~l~~~~~-~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 217 EALEELENSLR-ESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHCHT-CSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccccccc-ccccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99988765432 11223567999999999999997 899999999999 799999999999999999965
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=1.2e-17 Score=149.96 Aligned_cols=160 Identities=25% Similarity=0.384 Sum_probs=85.3
Q ss_pred CCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCc
Q 040774 231 GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLE 309 (1035)
Q Consensus 231 ~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~ 309 (1035)
.+.+.+++.|.++. +....+|+.+ ..+++|++|++++|.+.++|.+|+.++.||.|++.-|++..+ ..||.++-|+
T Consensus 29 Lf~~s~ITrLtLSH--NKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH--NKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhccc--CceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 33444444444443 4444444443 455555555555555555555555555555555555554433 5555555555
Q ss_pred EEecccCcCC--cchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcC
Q 040774 310 ILSLQASAIE--QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKN 387 (1035)
Q Consensus 310 ~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (1035)
+||+.+|++. .+|..+-.++.|+-|++++|. +..+|++ +++|++||.|.+..|.+. ..+.+++.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll------------~lpkeig~ 171 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL------------SLPKEIGD 171 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh------------hCcHHHHH
Confidence 5555555444 455555555555555555554 5555555 555555555555555543 44555555
Q ss_pred CCCCCEEEEeecCCCCCCCc
Q 040774 388 LSRLTTLEINILDAGILPSG 407 (1035)
Q Consensus 388 L~~L~~L~l~~~~~~~~~~~ 407 (1035)
++.|++|++.+|..+.+|+.
T Consensus 172 lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred HHHHHHHhcccceeeecChh
Confidence 55555555555555555543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=2.6e-17 Score=167.54 Aligned_cols=139 Identities=23% Similarity=0.367 Sum_probs=116.4
Q ss_pred CCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCC-CCCCCc--
Q 040774 224 NISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDS-CQLEDI-- 299 (1035)
Q Consensus 224 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~-~~l~~l-- 299 (1035)
.+.++|..+. +....+.+.. |.+..||+.+|+.+++||.||||.|.|+.+ |++|..+..|-.|-+.+ |+|+++
T Consensus 57 GL~eVP~~LP-~~tveirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANLP-PETVEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccCC-CcceEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 4556665553 2445566664 889999999999999999999999999988 89999999988887777 789988
Q ss_pred ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 300 RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 300 ~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
..|++|..|+.|.+.-|.+.-++. .+..|++|..|.+.+|. +..++.+.+..+.+++++.+..|..
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~ 200 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPF 200 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCcc
Confidence 889999999999999999886654 48999999999999987 8888887788999999998877663
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=7e-17 Score=144.96 Aligned_cols=150 Identities=26% Similarity=0.414 Sum_probs=140.5
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEc
Q 040774 213 KKCSRISLYDNNISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 291 (1035)
+.+.++.+++|++..+|+.+ ++.+|+.|.++. +.+.++|..+ +.+++||.|+++-|++..+|..|+.++-|++|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~n--nqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSN--NQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhccc--chhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 67889999999999998887 899999999985 8889999986 8999999999999999999999999999999999
Q ss_pred CCCCCCC--c-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 292 DSCQLED--I-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 292 ~~~~l~~--l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
.+|.+.. + ..|..+.-|+.|+++.|.++.+|..+++|++||.|.+.+|. +-.+|.. ++.|+.|++|++.+|.++
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceee
Confidence 9999863 3 88999999999999999999999999999999999999998 8889988 999999999999999987
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=4.7e-13 Score=156.85 Aligned_cols=118 Identities=19% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCc
Q 040774 261 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCS 340 (1035)
Q Consensus 261 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 340 (1035)
..-.+|+++.+.++++|+.+.. +|+.|++.+|.++.++.. +++|++|++++|+++.+|.. ..+|++|++++|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~~--~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchhc--CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 3456777777777777776653 677777777777766432 46777777777777777643 3567777777776
Q ss_pred cccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 341 KLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 341 ~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
+..+|.. ..+|+.|++++|.+. ..+. ..++|+.|++++|.+..+|
T Consensus 274 -L~~Lp~l----p~~L~~L~Ls~N~Lt------------~LP~---~p~~L~~LdLS~N~L~~Lp 318 (788)
T PRK15387 274 -LTHLPAL----PSGLCKLWIFGNQLT------------SLPV---LPPGLQELSVSDNQLASLP 318 (788)
T ss_pred -hhhhhhc----hhhcCEEECcCCccc------------cccc---cccccceeECCCCccccCC
Confidence 6666642 245667777777665 1111 2356777777776655444
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.45 E-value=1.2e-12 Score=153.41 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=103.2
Q ss_pred ccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCC
Q 040774 215 CSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 215 ~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 294 (1035)
-..++++++.+..+|..+. ++|+.|.+.. +....+|. ..++|++|++++|.++.+|.. ..+|+.|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~--N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPD--NNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccC--CcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 4467777777777776553 4677777776 55666664 256788888888888877753 356777888888
Q ss_pred CCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecccc
Q 040774 295 QLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLS 374 (1035)
Q Consensus 295 ~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 374 (1035)
.++.++. -..+|+.|++++|+++.+|.. +++|++|++++|. ++.+|.. . .+|+.|++++|.+.
T Consensus 273 ~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p---~~L~~L~Ls~N~L~------- 335 (788)
T PRK15387 273 PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-P---SELCKLWAYNNQLT------- 335 (788)
T ss_pred chhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-c---ccccccccccCccc-------
Confidence 7776633 235677788888887777753 4678888888775 6666642 2 34666777777665
Q ss_pred ccccccCHHhhcCCCCCCEEEEeecCCCCCCC
Q 040774 375 IERSNASLVELKNLSRLTTLEINILDAGILPS 406 (1035)
Q Consensus 375 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 406 (1035)
..+ .+ ..+|+.|++++|.+..+|.
T Consensus 336 -----~LP-~l--p~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 336 -----SLP-TL--PSGLQELSVSDNQLASLPT 359 (788)
T ss_pred -----ccc-cc--ccccceEecCCCccCCCCC
Confidence 111 11 1367778887777665554
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.42 E-value=1.7e-14 Score=147.24 Aligned_cols=152 Identities=22% Similarity=0.305 Sum_probs=107.5
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCc
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLE 309 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~ 309 (1035)
.|++.....+........++|.++ -..-..++|..|.|+.+|+ +|+.+++||.|||++|.|+.| +.|..|+.|-
T Consensus 42 ~Cs~~~g~~VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 42 TCSDVEGGIVDCRGKGLTEVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLL 118 (498)
T ss_pred ccCCCCCceEEccCCCcccCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhh
Confidence 444444444443345566677654 3456778889999999864 788899999999999988877 7888888887
Q ss_pred EEeccc-CcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcC
Q 040774 310 ILSLQA-SAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKN 387 (1035)
Q Consensus 310 ~L~L~~-~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 387 (1035)
.|.+.+ |+|+.+|.+ |+.|..||.|.+.-|. +..++.+.+..|++|..|.+.+|.+. ...-..+..
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q-----------~i~~~tf~~ 186 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQ-----------SICKGTFQG 186 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhh-----------hhccccccc
Confidence 777766 688888876 7888888888887776 77777777888888888888877765 111124555
Q ss_pred CCCCCEEEEeec
Q 040774 388 LSRLTTLEINIL 399 (1035)
Q Consensus 388 L~~L~~L~l~~~ 399 (1035)
+..++.+.+..|
T Consensus 187 l~~i~tlhlA~n 198 (498)
T KOG4237|consen 187 LAAIKTLHLAQN 198 (498)
T ss_pred hhccchHhhhcC
Confidence 566666555444
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.36 E-value=1.3e-12 Score=154.28 Aligned_cols=246 Identities=19% Similarity=0.203 Sum_probs=143.2
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDS 293 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 293 (1035)
+...+.+.++.+..+|..+. ++++.|++.+ +....+|..++ .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~--N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDN--NELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecC--CCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 44567777777777765442 4677777775 55666776653 467777777777777776554 3677777777
Q ss_pred CCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 294 CQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 294 ~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
|.+..+ ..+. .+|++|++++|.++.+|..+. .+|++|++++|. ++.+|.. +. .+|++|++++|.+.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt----- 317 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLT----- 317 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCccc-----
Confidence 777665 3332 467777777777777776553 467777777775 6666654 32 35677777777665
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCc
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGM 452 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l 452 (1035)
..+..+ .++|+.|++++|....+|..+.
T Consensus 318 -------~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~------------------------------------------- 345 (754)
T PRK15370 318 -------ALPETL--PPGLKTLEAGENALTSLPASLP------------------------------------------- 345 (754)
T ss_pred -------cCCccc--cccceeccccCCccccCChhhc-------------------------------------------
Confidence 111111 1466777777766555543220
Q ss_pred cccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeeccccccccccccccc-ccC
Q 040774 453 KNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQL-RAE 531 (1035)
Q Consensus 453 ~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~ 531 (1035)
++|+.|+++++. +.. +|. ...++|++|++++|. +..++. .....|+.|++.++ ++..++.... ...
T Consensus 346 ~sL~~L~Ls~N~-L~~-LP~---~lp~~L~~LdLs~N~-Lt~LP~------~l~~sL~~LdLs~N-~L~~LP~sl~~~~~ 412 (754)
T PRK15370 346 PELQVLDVSKNQ-ITV-LPE---TLPPTITTLDVSRNA-LTNLPE------NLPAALQIMQASRN-NLVRLPESLPHFRG 412 (754)
T ss_pred CcccEEECCCCC-CCc-CCh---hhcCCcCEEECCCCc-CCCCCH------hHHHHHHHHhhccC-CcccCchhHHHHhh
Confidence 345556666543 221 121 113567777777765 332221 11235777777763 4444432111 112
Q ss_pred CCCCcceEEEeecC
Q 040774 532 SFCNLKTIKVGSCH 545 (1035)
Q Consensus 532 ~l~~L~~L~l~~c~ 545 (1035)
.++.+..|.+.+.+
T Consensus 413 ~~~~l~~L~L~~Np 426 (754)
T PRK15370 413 EGPQPTRIIVEYNP 426 (754)
T ss_pred cCCCccEEEeeCCC
Confidence 34677788887643
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=1.2e-12 Score=157.05 Aligned_cols=127 Identities=24% Similarity=0.340 Sum_probs=103.6
Q ss_pred CCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCC--CCCc--ccccCCCCCcEEecccC-cCCcchHhhccCCcCCE
Q 040774 259 GMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQ--LEDI--RVIGELRKLEILSLQAS-AIEQLPMEIGQLTQLKL 333 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~--l~~l--~~i~~L~~L~~L~L~~~-~l~~lp~~i~~L~~L~~ 333 (1035)
.....|...+-+|.+..++.+..+ +.|++|-+.+|. +..+ ..|..+++|++||+++| .+.++|.+|+.|.+||+
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 456778888888888877766544 479999998886 5555 44888999999999988 78899999999999999
Q ss_pred EcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeec
Q 040774 334 LDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINIL 399 (1035)
Q Consensus 334 L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 399 (1035)
|+++++. ++.+|.+ +++|++|.+|++..+... ...+.....|++|++|.+...
T Consensus 600 L~L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~~~l-----------~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 600 LDLSDTG-ISHLPSG-LGNLKKLIYLNLEVTGRL-----------ESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccCCC-ccccchH-HHHHHhhheecccccccc-----------ccccchhhhcccccEEEeecc
Confidence 9999998 9999999 999999999999877643 222344556889999888654
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=2.5e-11 Score=143.70 Aligned_cols=175 Identities=17% Similarity=0.332 Sum_probs=137.0
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++.+++++|.+..+|.... .+|++|++.+ +....+|..++ .+|+.|++++|.+..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~--N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENLQ-GNIKTLYANS--NQLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhhc-cCCCEEECCC--CccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 578999999999999987654 6999999997 56678887653 479999999999999998775 489999999
Q ss_pred CCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeec
Q 040774 293 SCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 293 ~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
+|.++.+ ..+. .+|++|++++|.++.+|..+. .+|++|++++|. +..+|.. + ..+|++|++++|.+.
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt---- 338 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALT---- 338 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCccc----
Confidence 9999877 4443 589999999999999987654 478999999987 8888865 3 368999999999876
Q ss_pred cccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEE
Q 040774 372 GLSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRI 418 (1035)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 418 (1035)
..+..+. ++|+.|++++|.+..+|..+ ..+|+.|.+
T Consensus 339 --------~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdL 374 (754)
T PRK15370 339 --------SLPASLP--PELQVLDVSKNQITVLPETL-PPTITTLDV 374 (754)
T ss_pred --------cCChhhc--CcccEEECCCCCCCcCChhh-cCCcCEEEC
Confidence 2333332 68999999999877676543 234444433
No 24
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.30 E-value=2.9e-14 Score=147.07 Aligned_cols=313 Identities=15% Similarity=0.175 Sum_probs=200.8
Q ss_pred cccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCcccccccCCcc
Q 040774 630 NLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYPGVHT 709 (1035)
Q Consensus 630 ~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~ 709 (1035)
.|+.|.+++|.....-+...+...+|++++|.+.+|.++...... .....+++|+++.+..|+++++.......
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~------sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLL------SLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHH------HHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 477888888876655444455677888888888888766433211 01234677888888888888776655455
Q ss_pred cCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccCCceeEecccccCccccccCCCCccc
Q 040774 710 LECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFPDYL 789 (1035)
Q Consensus 710 ~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 789 (1035)
..|++|++|.++.|+.+.. .++......+..++.+...+|.++..-.-
T Consensus 213 ~gC~kL~~lNlSwc~qi~~-------------------------~gv~~~~rG~~~l~~~~~kGC~e~~le~l------- 260 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISG-------------------------NGVQALQRGCKELEKLSLKGCLELELEAL------- 260 (483)
T ss_pred HhhhhHHHhhhccCchhhc-------------------------CcchHHhccchhhhhhhhcccccccHHHH-------
Confidence 5688888888888887652 11111113344556665556654331100
Q ss_pred CCCccEEEeecCCCcCCCchHHhhcCCceEEEEE-eCccceecccCCccccccccccccccccccccccCceeeeccCCC
Q 040774 790 SNKLKVLAIENDESEVLPPDLLERFHNLVNLELA-YGSYKELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWEQNS 868 (1035)
Q Consensus 790 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~-c~~l~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i~~~~~ 868 (1035)
..+-....-+.++++. |+.+++.- +...-..+..|+.|..++|.++++..+|+.+
T Consensus 261 ------------------~~~~~~~~~i~~lnl~~c~~lTD~~-----~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg- 316 (483)
T KOG4341|consen 261 ------------------LKAAAYCLEILKLNLQHCNQLTDED-----LWLIACGCHALQVLCYSSCTDITDEVLWALG- 316 (483)
T ss_pred ------------------HHHhccChHhhccchhhhccccchH-----HHHHhhhhhHhhhhcccCCCCCchHHHHHHh-
Confidence 0000122334455555 76665431 0122335788899999999998886676533
Q ss_pred cccccccccceEEeecccCccccCCC--cccccCccEEEeccCCCCcchhhhhhhhcccccceEeeccccccceeecccc
Q 040774 869 KLNTVFQNLETLSAHFCLNLTNLMPS--SASFRCLKELRVCACEHLMNLVASSAAKNLVQLVRMTVRECNKITELVVASE 946 (1035)
Q Consensus 869 ~~~~~l~~L~~L~i~~C~~l~~l~~~--~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 946 (1035)
+++.+|+.|.+..|..++..-.. ..+.+.|+.+++..|....+---.+...+++.||.|.+++|..+++-.+...
T Consensus 317 ---~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 317 ---QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred ---cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 66789999999999887754221 2357889999999998887753456678899999999999987776522111
Q ss_pred ccCCCCccccccccccccccccccceeccCCceeeCCccCEEEEecCCCcccccCCc--cccccccE
Q 040774 947 GDAANDEIIFPKLMFLKLHRLQSLTTFCSANYTFKFPSLFYLSVRNCPKMKIFCGGV--LSAPRLER 1011 (1035)
Q Consensus 947 ~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~--~~~~~l~~ 1011 (1035)
+ ........|..+.+.+||.+++-..... ..++.|+.+++.+|...+.=+-.. ..+|+++.
T Consensus 394 ~---~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 394 S---SSSCSLEGLEVLELDNCPLITDATLEHL-SICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred h---hccccccccceeeecCCCCchHHHHHHH-hhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 1 0122456789999999999886654433 478999999999998887643222 34555444
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.18 E-value=6.1e-13 Score=137.43 Aligned_cols=291 Identities=21% Similarity=0.219 Sum_probs=150.8
Q ss_pred cCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCcccccccC
Q 040774 627 SVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYPG 706 (1035)
Q Consensus 627 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~ 706 (1035)
..|++++|.+.+|.++++-.-.++...++.|++|.+..|.+++...-.. ....+++|++|+++-|+.++.-...
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~------la~gC~kL~~lNlSwc~qi~~~gv~ 235 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKY------LAEGCRKLKYLNLSWCPQISGNGVQ 235 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHH------HHHhhhhHHHhhhccCchhhcCcch
Confidence 5567777777777777665555556677778888887777665443211 1234677888888887777663222
Q ss_pred CcccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccCCceeEecccccCccccccCCCC
Q 040774 707 VHTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFP 786 (1035)
Q Consensus 707 ~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 786 (1035)
.....+..++.+...+|..++ .+.+...+...+-+.++++..|..+++.....+
T Consensus 236 ~~~rG~~~l~~~~~kGC~e~~-------------------------le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i- 289 (483)
T KOG4341|consen 236 ALQRGCKELEKLSLKGCLELE-------------------------LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLI- 289 (483)
T ss_pred HHhccchhhhhhhhccccccc-------------------------HHHHHHHhccChHhhccchhhhccccchHHHHH-
Confidence 222334555666555665442 111222223455666777777877765432111
Q ss_pred cccCCCccEEEe-ecCCCcCCC-chHHhhcCCceEEEEE-eCccceecccCCccccccccccccccccccccccCceeee
Q 040774 787 DYLSNKLKVLAI-ENDESEVLP-PDLLERFHNLVNLELA-YGSYKELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWL 863 (1035)
Q Consensus 787 ~~~~~~L~~L~l-~~~~~~~~~-~~~l~~l~~L~~L~i~-c~~l~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i 863 (1035)
...+..|+.|.. +.+..+..+ ....++.++|+.|.+. |..++.. |+ ...-.+.+.|+.+++.+|....+-.
T Consensus 290 ~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~----~f-t~l~rn~~~Le~l~~e~~~~~~d~t- 363 (483)
T KOG4341|consen 290 ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR----GF-TMLGRNCPHLERLDLEECGLITDGT- 363 (483)
T ss_pred hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh----hh-hhhhcCChhhhhhcccccceehhhh-
Confidence 134455566655 222233322 2233455666666666 6554432 10 0111234455555555544333211
Q ss_pred ccCCCcccccccccceEEeecccCccccCCCcccccCccEEEeccCCCCcchhh---hhhhhcccccceEeeccccccce
Q 040774 864 WEQNSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLKELRVCACEHLMNLVA---SSAAKNLVQLVRMTVRECNKITE 940 (1035)
Q Consensus 864 ~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~L~~L~i~~c~~L~~l~~---~~~~~~l~~L~~L~i~~c~~l~~ 940 (1035)
+-.-..+.+.|+.|.+++|..+++... .+....+..|+.+.+.+|+.+++
T Consensus 364 ---------------------------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 364 ---------------------------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred ---------------------------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH
Confidence 111122355566666666665555311 11113345566666666666655
Q ss_pred eeccccccCCCCccccccccccccccccccceeccCCceeeCCccCEEE
Q 040774 941 LVVASEGDAANDEIIFPKLMFLKLHRLQSLTTFCSANYTFKFPSLFYLS 989 (1035)
Q Consensus 941 l~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~ 989 (1035)
...+ ....+++|+.+.+.+|...++-+......++|+++...
T Consensus 417 ~~Le-------~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 417 ATLE-------HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA 458 (483)
T ss_pred HHHH-------HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence 4222 23345667777777777766665555544555554433
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.2e-10 Score=111.63 Aligned_cols=130 Identities=23% Similarity=0.307 Sum_probs=54.9
Q ss_pred cCCCCccEEEccCCcCccCccccc-CCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhh-ccCCcCCEEc
Q 040774 258 IGMPKLKVLDFTRMRLLSLPSSIH-LLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEI-GQLTQLKLLD 335 (1035)
Q Consensus 258 ~~~~~Lr~L~Ls~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L~ 335 (1035)
.+..++|.|+|.+|.|+.+. .++ .+.+|+.|++++|.++.++.+..+++|++|++++|.|+++++.+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 46667899999999998874 465 58899999999999999988999999999999999999887666 4689999999
Q ss_pred ccCCccccccCh-hhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEe
Q 040774 336 LSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEIN 397 (1035)
Q Consensus 336 l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~ 397 (1035)
+++|. +..+.. ..++.+++|++|++.+|++. .........+..+++|+.|+-.
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~--------~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC--------EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGG--------GSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCccc--------chhhHHHHHHHHcChhheeCCE
Confidence 99886 655432 23677899999999999886 1223344557788888888754
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=1e-11 Score=133.07 Aligned_cols=177 Identities=24% Similarity=0.344 Sum_probs=158.3
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEc
Q 040774 213 KKCSRISLYDNNISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 291 (1035)
.+....+++.|++.++|... .+..|..+.+.. +.+..+|..+ ..+..|.+|||+.|.++.+|..++.|. |++|.+
T Consensus 75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~--n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFSELPEEACAFVSLESLILYH--NCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccccCchHHHHHHHHHHHHHHh--ccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEE
Confidence 45667788999999999766 677888888886 7888888876 689999999999999999999998875 999999
Q ss_pred CCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceee
Q 040774 292 DSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEV 370 (1035)
Q Consensus 292 ~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 370 (1035)
++|+++.+ ..++.+.+|..||.+.|.+..+|..++.+.+|+.|.+..|. +..+|+. ++. -.|..||++.|++.
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~-LpLi~lDfScNkis--- 224 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCS-LPLIRLDFSCNKIS--- 224 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhC-CceeeeecccCcee---
Confidence 99999977 88999999999999999999999999999999999999998 8899988 664 46899999999987
Q ss_pred ccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCcc
Q 040774 371 LGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGF 408 (1035)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~ 408 (1035)
..+..+.+|++|++|-|.+|..+.-|..+
T Consensus 225 ---------~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 ---------YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ---------ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 67889999999999999999988888776
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.00 E-value=1.3e-10 Score=128.21 Aligned_cols=137 Identities=23% Similarity=0.245 Sum_probs=87.7
Q ss_pred hhhcCCCCccEEEccCCcCc-----cCcccccCCCCCcEEEcCCCCCCC-------c-ccccCCCCCcEEecccCcCC-c
Q 040774 255 NIFIGMPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDSCQLED-------I-RVIGELRKLEILSLQASAIE-Q 320 (1035)
Q Consensus 255 ~~f~~~~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~-------l-~~i~~L~~L~~L~L~~~~l~-~ 320 (1035)
.+|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. + ..+.++.+|++|++++|.+. .
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 96 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD 96 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence 44566777888888888873 356667777778888888877652 1 45666778888888887766 3
Q ss_pred chHhhccCCc---CCEEcccCCccccc-----cChhhhcCC-CCCcEEEccCCccceeeccccccccccCHHhhcCCCCC
Q 040774 321 LPMEIGQLTQ---LKLLDLSNCSKLKV-----IAPNVLSNL-SQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRL 391 (1035)
Q Consensus 321 lp~~i~~L~~---L~~L~l~~~~~l~~-----lp~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 391 (1035)
.+..+..+.+ |++|++++|. +.. +... +..+ ++|++|++++|.+.+.. .......+..+++|
T Consensus 97 ~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~-------~~~~~~~~~~~~~L 167 (319)
T cd00116 97 GCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS-------CEALAKALRANRDL 167 (319)
T ss_pred HHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH-------HHHHHHHHHhCCCc
Confidence 4555555554 8888888776 432 1112 4555 77788888877765110 01223345566677
Q ss_pred CEEEEeecC
Q 040774 392 TTLEINILD 400 (1035)
Q Consensus 392 ~~L~l~~~~ 400 (1035)
++|+++++.
T Consensus 168 ~~L~l~~n~ 176 (319)
T cd00116 168 KELNLANNG 176 (319)
T ss_pred CEEECcCCC
Confidence 777776654
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=8.5e-11 Score=115.88 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=118.4
Q ss_pred CCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccC
Q 040774 259 GMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSN 338 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 338 (1035)
..+.|..+|||+|.|+.+-+++.-++.+|.|++++|.+..+.++..|++|+.||||+|.++++-..-.+|-|.++|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 45779999999999999999999999999999999999999889999999999999999988766667889999999999
Q ss_pred CccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCC
Q 040774 339 CSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPS 406 (1035)
Q Consensus 339 ~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 406 (1035)
|. +..+.. +++|-+|..|++++|+|. .-..+..+++|+-|+++.+.+|+...++.
T Consensus 362 N~-iE~LSG--L~KLYSLvnLDl~~N~Ie----------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NK-IETLSG--LRKLYSLVNLDLSSNQIE----------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hh-Hhhhhh--hHhhhhheeccccccchh----------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 97 777753 899999999999999986 12445678999999999999998766554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.7e-10 Score=107.57 Aligned_cols=126 Identities=30% Similarity=0.387 Sum_probs=48.4
Q ss_pred ccCCcCccCcccccCCCCCcEEEcCCCCCCCccccc-CCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccC
Q 040774 268 FTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIG-ELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIA 346 (1035)
Q Consensus 268 Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~-~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp 346 (1035)
+..+.|...|. +.+..++|.|+|++|.|+.++.++ .+.+|+.|++++|.|+.++ ++..+++|++|++++|. ++.++
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~ 80 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS 80 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C
T ss_pred ccccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc
Confidence 34455555554 456678999999999999998888 6899999999999999886 58889999999999998 88887
Q ss_pred hhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCC
Q 040774 347 PNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPS 406 (1035)
Q Consensus 347 ~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 406 (1035)
+.....+++|++|++++|.+. .-..+..++.+++|+.|++.+|++...+.
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~----------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~ 130 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKIS----------DLNELEPLSSLPKLRVLSLEGNPVCEKKN 130 (175)
T ss_dssp HHHHHH-TT--EEE-TTS-------------SCCCCGGGGG-TT--EEE-TT-GGGGSTT
T ss_pred cchHHhCCcCCEEECcCCcCC----------ChHHhHHHHcCCCcceeeccCCcccchhh
Confidence 663356999999999999986 12456788899999999999998665443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=8.9e-11 Score=126.12 Aligned_cols=185 Identities=25% Similarity=0.352 Sum_probs=151.7
Q ss_pred EEecCCCCCCCCCC---CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCC
Q 040774 218 ISLYDNNISEIPQG---WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 218 l~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~ 294 (1035)
+.|++.++.++|-. .++..-...+++. +....+|..+ ..+..|..+.|..|.+..+|..++++..|.||+|+.|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsr--NR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSR--NRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccc--cccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 33444444444321 2444445566665 7788888875 6788899999999999999999999999999999999
Q ss_pred CCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccc
Q 040774 295 QLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGL 373 (1035)
Q Consensus 295 ~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 373 (1035)
+++.+ ..++.|. |++|-+++|+++.+|+.++.+..|.+||.+.|. +..+|.. ++.+.+|+.|.+..|.+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 99987 6677665 999999999999999999999999999999998 8899988 999999999999999876
Q ss_pred cccccccCHHhhcCCCCCCEEEEeecCCCCCCCcc-ccccccEEEEEEc
Q 040774 374 SIERSNASLVELKNLSRLTTLEINILDAGILPSGF-FSRKLERYRIVVG 421 (1035)
Q Consensus 374 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~l~~~~~ 421 (1035)
..+.++..| .|..|++++|++..+|-.+ .+..|+.+.+..+
T Consensus 203 ------~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 203 ------DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ------hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence 677888866 5889999999999999876 6777777766543
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.84 E-value=1.9e-09 Score=118.95 Aligned_cols=109 Identities=26% Similarity=0.266 Sum_probs=51.3
Q ss_pred hcCCCCccEEEccCCcCcc-CcccccCCCC---CcEEEcCCCCCCC-----c-ccccCC-CCCcEEecccCcCC-----c
Q 040774 257 FIGMPKLKVLDFTRMRLLS-LPSSIHLLTD---LRTLCLDSCQLED-----I-RVIGEL-RKLEILSLQASAIE-----Q 320 (1035)
Q Consensus 257 f~~~~~Lr~L~Ls~~~i~~-lp~~i~~L~~---Lr~L~L~~~~l~~-----l-~~i~~L-~~L~~L~L~~~~l~-----~ 320 (1035)
|..+++|+.|++++|.+.. .+..+..+.+ |++|++++|.+.. + ..+..+ ++|+.|++++|.++ .
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3445555555555555542 2223332222 5555555555441 1 334444 55555555555544 2
Q ss_pred chHhhccCCcCCEEcccCCccccc-----cChhhhcCCCCCcEEEccCCccc
Q 040774 321 LPMEIGQLTQLKLLDLSNCSKLKV-----IAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 321 lp~~i~~L~~L~~L~l~~~~~l~~-----lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
++..+..+.+|++|++++|. ++. ++.. +..+++|++|++++|.+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 157 LAKALRANRDLKELNLANNG-IGDAGIRALAEG-LKANCNLEVLDLNNNGLT 206 (319)
T ss_pred HHHHHHhCCCcCEEECcCCC-CchHHHHHHHHH-HHhCCCCCEEeccCCccC
Confidence 23334445555555555554 321 1111 333445555555555543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=1.8e-08 Score=114.40 Aligned_cols=170 Identities=29% Similarity=0.377 Sum_probs=100.3
Q ss_pred CccEEEecCCCCCCCCCCCCCC--CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEc
Q 040774 214 KCSRISLYDNNISEIPQGWECP--QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 291 (1035)
.+..+.+.+|.+.+++...... +|+.|++.. +....+|.. ...++.|+.|++++|.+..+|...+.+..|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~--N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD--NKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccc--cchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4566666666666666555433 566666665 555555433 25566666666666666666665556666666666
Q ss_pred CCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceee
Q 040774 292 DSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEV 370 (1035)
Q Consensus 292 ~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 370 (1035)
++|.+..+ ..++.+.+|++|.+++|.+...+..+.++.++..+.+.++. +..++.. ++++.+++.|++++|.+.
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecccccccc---
Confidence 66666666 33345555666666666555555566666666666655554 4443333 566666666666666654
Q ss_pred ccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 371 LGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
.+..++.+.+++.|+++++..
T Consensus 269 ----------~i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 269 ----------SISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred ----------ccccccccCccCEEeccCccc
Confidence 222256666666666666553
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=4.7e-09 Score=103.83 Aligned_cols=129 Identities=25% Similarity=0.277 Sum_probs=104.2
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEE
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEIL 311 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L 311 (1035)
....|.++++++ |.+..+.++. .-.+.+|+|++|+|++..+-. +..|++|+.|||++|.++.+ .--.+|-+.++|
T Consensus 282 TWq~LtelDLS~--N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSG--NLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccc--cchhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeee
Confidence 456788889987 7777777764 557889999999999887744 78889999999999998877 444578888899
Q ss_pred ecccCcCCcchHhhccCCcCCEEcccCCccccccCh-hhhcCCCCCcEEEccCCccc
Q 040774 312 SLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 312 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~ 367 (1035)
.|++|.+..+ .++++|++|..||+++|+ +..+.. ..||+|+.|+++.+.+|.+.
T Consensus 358 ~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999988876 468899999999999987 655532 23899999999999999876
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.60 E-value=4.1e-08 Score=111.53 Aligned_cols=185 Identities=31% Similarity=0.347 Sum_probs=142.7
Q ss_pred EEecCCCC-CCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCC-CccEEEccCCcCccCcccccCCCCCcEEEcCCCC
Q 040774 218 ISLYDNNI-SEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMP-KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQ 295 (1035)
Q Consensus 218 l~l~~~~~-~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~-~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~ 295 (1035)
+.+..+.+ ..+......+.++.|.+.. +...++++.. ..++ +|+.|++++|.+..+|..++.+++|+.|++++|+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~--n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDN--NNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCC--cccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 45555554 2333333557788888876 7777887764 3453 8999999999999998889999999999999999
Q ss_pred CCCcc-cccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecccc
Q 040774 296 LEDIR-VIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLS 374 (1035)
Q Consensus 296 l~~l~-~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 374 (1035)
+..++ ..+.+..|+.|++++|.+..+|..+..+..|++|.+++|. ....+.. +.++.++..|.+.++++.
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~------- 245 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE------- 245 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee-------
Confidence 98884 4448999999999999999999888888889999999986 4444444 788888888888877764
Q ss_pred ccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEE
Q 040774 375 IERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIV 419 (1035)
Q Consensus 375 ~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~ 419 (1035)
..+..++.+++++.|+++.|.+..++......+++.+.+.
T Consensus 246 -----~~~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 246 -----DLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred -----eccchhccccccceeccccccccccccccccCccCEEecc
Confidence 3356788888999999999998888774456666666553
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=3.8e-08 Score=103.15 Aligned_cols=164 Identities=20% Similarity=0.231 Sum_probs=103.4
Q ss_pred CCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccc
Q 040774 532 SFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDIN 611 (1035)
Q Consensus 532 ~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 611 (1035)
.+.+|+++.+.+|+- ...+.....+.+++++.|+++.+-..+- ..+..- ...+|+|+.|+++.|.
T Consensus 119 n~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~i-------------~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 119 NLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLKI-------------AEQLPSLENLNLSSNR 183 (505)
T ss_pred hHHhhhheeecCccc-cccchhhhhhhCCcceeecchhhhHHhH-HHHHHH-------------HHhcccchhccccccc
Confidence 455566666665431 2222223456788888888887653211 011111 1238999999999998
Q ss_pred cccccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCe
Q 040774 612 VAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTI 691 (1035)
Q Consensus 612 l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~ 691 (1035)
+...|...... .++.|+.|.++.| .++.---...+..+|+|+.|++..+..+ .........+..|+.
T Consensus 184 l~~~~~s~~~~----~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~--------~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 184 LSNFISSNTTL----LLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEII--------LIKATSTKILQTLQE 250 (505)
T ss_pred ccCCccccchh----hhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccccc--------ceecchhhhhhHHhh
Confidence 88877665543 5678999999999 5554333344567899999999887522 111223345778999
Q ss_pred eecccCCcccccccCCcccCCCCcceeeeecCC
Q 040774 692 LKLHYLPELRAFYPGVHTLECPMLTKLEVYICD 724 (1035)
Q Consensus 692 L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~ 724 (1035)
|+|++. ++.+++.......+|.|+.|.++.|.
T Consensus 251 LdLs~N-~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 251 LDLSNN-NLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred ccccCC-cccccccccccccccchhhhhccccC
Confidence 999885 45555544444557788888777764
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5e-08 Score=102.28 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=81.1
Q ss_pred cCCCCccEEEccCCcCcc---CcccccCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEecccCcCC--cchHhhccCC
Q 040774 258 IGMPKLKVLDFTRMRLLS---LPSSIHLLTDLRTLCLDSCQLEDI---RVIGELRKLEILSLQASAIE--QLPMEIGQLT 329 (1035)
Q Consensus 258 ~~~~~Lr~L~Ls~~~i~~---lp~~i~~L~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~L~~~~l~--~lp~~i~~L~ 329 (1035)
..+.++|.||||.|-+.. +-+-...|++|+.|+++.|.+..+ ..-..+.+|+.|.+++|+++ .+..-...++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 456777777777775543 233445677777777777776544 22335677777788877776 3334455677
Q ss_pred cCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 330 QLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 330 ~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
+|..|++..|..+...... ...++.|++|++++|.+.. .......+.++.|+.|+++.+.+
T Consensus 223 sl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~----------~~~~~~~~~l~~L~~Lnls~tgi 283 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLID----------FDQGYKVGTLPGLNQLNLSSTGI 283 (505)
T ss_pred cHHHhhhhcccccceecch-hhhhhHHhhccccCCcccc----------cccccccccccchhhhhccccCc
Confidence 7788888777422222111 3446677778887777651 12334566677777777766653
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=5.6e-09 Score=115.42 Aligned_cols=180 Identities=23% Similarity=0.242 Sum_probs=134.5
Q ss_pred CCCCCCccEEEecCCCCCCCCCCCCC-CCcceeeccCCC--------CCCCCCChhhhcCCCCccEEEccCCcCccCccc
Q 040774 209 QWPDKKCSRISLYDNNISEIPQGWEC-PQLEFFYNFAPN--------NSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSS 279 (1035)
Q Consensus 209 ~~~~~~~~~l~l~~~~~~~l~~~~~~-~~Lr~L~l~~~~--------~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~ 279 (1035)
.+|-..+|++-+.++.+..+.....+ ..|++|+....- ...+.+.... ....|.+.+.++|.+..+-.+
T Consensus 105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~S 182 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDES 182 (1096)
T ss_pred eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHH
Confidence 34448899999999888754332221 345555544310 0112222111 235688899999999988888
Q ss_pred ccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcE
Q 040774 280 IHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEE 358 (1035)
Q Consensus 280 i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~ 358 (1035)
+.-+++|+.|+|++|++...+.+..+.+|++||+++|.++.+|.- ...+ +|+.|.+++|. ++.+-. +.+|++|+.
T Consensus 183 Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~-l~tL~g--ie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNA-LTTLRG--IENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccH-HHhhhh--HHhhhhhhc
Confidence 999999999999999999999999999999999999999988864 2333 49999999998 887753 899999999
Q ss_pred EEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCC
Q 040774 359 LYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGIL 404 (1035)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 404 (1035)
||+++|-+. ....+.-+..|..|+.|.+.+|....-
T Consensus 259 LDlsyNll~----------~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 259 LDLSYNLLS----------EHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cchhHhhhh----------cchhhhHHHHHHHHHHHhhcCCccccC
Confidence 999999876 134556677788899999999975433
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=4.9e-07 Score=71.01 Aligned_cols=58 Identities=31% Similarity=0.446 Sum_probs=27.6
Q ss_pred CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCC
Q 040774 236 QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQ 295 (1035)
Q Consensus 236 ~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~ 295 (1035)
+|++|++.+ +....+|+++|..+++|++|++++|.+..+| ..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~--n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSN--NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETS--STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCC--CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 344444443 3444444444555555555555555555442 344455555555554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.32 E-value=3.7e-07 Score=71.67 Aligned_cols=58 Identities=36% Similarity=0.557 Sum_probs=37.2
Q ss_pred CCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCc
Q 040774 307 KLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCS 365 (1035)
Q Consensus 307 ~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 365 (1035)
+|++|++++|+++.+|. .+..+++|++|++++|. ++.++++.+.++++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666666654 35666666666666665 666666656666666666666664
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.24 E-value=2e-06 Score=102.12 Aligned_cols=85 Identities=26% Similarity=0.458 Sum_probs=38.4
Q ss_pred ccEEEccCCcCc-cCcccccCCCCCcEEEcCCCCCCC-c-ccccCCCCCcEEecccCcCC-cchHhhccCCcCCEEcccC
Q 040774 263 LKVLDFTRMRLL-SLPSSIHLLTDLRTLCLDSCQLED-I-RVIGELRKLEILSLQASAIE-QLPMEIGQLTQLKLLDLSN 338 (1035)
Q Consensus 263 Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~ 338 (1035)
++.|+|++|.+. .+|..++.+++|++|+|++|.+.. + ..++.+++|++|++++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 344444444444 334444444444444444444432 2 34444444444444444444 3444444444444444444
Q ss_pred CccccccCh
Q 040774 339 CSKLKVIAP 347 (1035)
Q Consensus 339 ~~~l~~lp~ 347 (1035)
|.....+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 442233443
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=3.1e-06 Score=100.62 Aligned_cols=109 Identities=18% Similarity=0.301 Sum_probs=92.3
Q ss_pred CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-cCcccccCCCCCcEEEcCCCCCCC-c-ccccCCCCCcEEe
Q 040774 236 QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-SLPSSIHLLTDLRTLCLDSCQLED-I-RVIGELRKLEILS 312 (1035)
Q Consensus 236 ~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L~ 312 (1035)
.++.|++.+ +...+.+|.. +.++++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. + ..++++++|++|+
T Consensus 419 ~v~~L~L~~-n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 419 FIDGLGLDN-QGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEEECCC-CCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence 478888887 5666678776 589999999999999998 789999999999999999999884 3 7899999999999
Q ss_pred cccCcCC-cchHhhccC-CcCCEEcccCCccccccC
Q 040774 313 LQASAIE-QLPMEIGQL-TQLKLLDLSNCSKLKVIA 346 (1035)
Q Consensus 313 L~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~l~~lp 346 (1035)
+++|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 9999888 889988764 577888888886555443
No 43
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=3.7e-06 Score=90.78 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=6.4
Q ss_pred cccceEeecccc
Q 040774 925 VQLVRMTVRECN 936 (1035)
Q Consensus 925 ~~L~~L~i~~c~ 936 (1035)
++|++|.|++|.
T Consensus 156 sSLk~L~Is~c~ 167 (426)
T PRK15386 156 PSLKTLSLTGCS 167 (426)
T ss_pred CcccEEEecCCC
Confidence 355555555555
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.07 E-value=4.2e-06 Score=59.77 Aligned_cols=41 Identities=29% Similarity=0.469 Sum_probs=26.1
Q ss_pred CCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCccc
Q 040774 261 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRV 301 (1035)
Q Consensus 261 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~ 301 (1035)
++|++|++++|.|+.+|..+++|++|++|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 35677777777777776667777777777777776665443
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=6.9e-06 Score=88.74 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=56.7
Q ss_pred cccccccccccccccccCceeeeccCCCcccccccccceEEeecccCccccCCCcccccCccEEEeccCCCCcchhhhhh
Q 040774 841 VGKLAQIRYLTLEHLNDLKHLWLWEQNSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLKELRVCACEHLMNLVASSA 920 (1035)
Q Consensus 841 ~~~l~~L~~L~l~~c~~L~~L~i~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~L~~L~i~~c~~L~~l~~~~~ 920 (1035)
+..+..++.|++++| .|++| | .-.++|++|.+++|.+++.+|..+ +++|++|++++|.++..++
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sL------P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESL------P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCccc------C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----
Confidence 344688999999999 77773 2 112469999999999999998654 5799999999999888762
Q ss_pred hhcccccceEeecc
Q 040774 921 AKNLVQLVRMTVRE 934 (1035)
Q Consensus 921 ~~~l~~L~~L~i~~ 934 (1035)
.+|+.|++.+
T Consensus 112 ----~sLe~L~L~~ 121 (426)
T PRK15386 112 ----ESVRSLEIKG 121 (426)
T ss_pred ----cccceEEeCC
Confidence 3466777654
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.99 E-value=1.3e-06 Score=99.25 Aligned_cols=107 Identities=28% Similarity=0.370 Sum_probs=75.4
Q ss_pred cCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEccc
Q 040774 258 IGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS 337 (1035)
Q Consensus 258 ~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 337 (1035)
..+++|.+|++.+|.|..+...+..+.+|++|++++|.|+.+..+..+..|+.|++++|.|+.++ .+..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 56777777777777777776556777777777777777777777777777777777777777654 34557777777777
Q ss_pred CCccccccCh-hhhcCCCCCcEEEccCCccc
Q 040774 338 NCSKLKVIAP-NVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 338 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~ 367 (1035)
+|. +..+.. . ...+.+++.+.+.+|.+.
T Consensus 171 ~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 171 YNR-IVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred cch-hhhhhhhh-hhhccchHHHhccCCchh
Confidence 776 555544 1 356677777777776654
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=2.8e-07 Score=91.68 Aligned_cols=78 Identities=23% Similarity=0.376 Sum_probs=43.1
Q ss_pred CccEEEccCCcCc--cCcccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccC-cCCcch--HhhccCCcCCEE
Q 040774 262 KLKVLDFTRMRLL--SLPSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQAS-AIEQLP--MEIGQLTQLKLL 334 (1035)
Q Consensus 262 ~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~-~l~~lp--~~i~~L~~L~~L 334 (1035)
.|++||||...|+ ++-.-++.+.+|+.|.+.|+++.+. ..|.+-.+|+.|+++++ ++++.. --+..++.|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4777777777665 3444455666777777777666543 55555555666666554 444221 123444444444
Q ss_pred cccCC
Q 040774 335 DLSNC 339 (1035)
Q Consensus 335 ~l~~~ 339 (1035)
+++-|
T Consensus 266 NlsWc 270 (419)
T KOG2120|consen 266 NLSWC 270 (419)
T ss_pred CchHh
Confidence 44444
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.94 E-value=1.1e-06 Score=99.95 Aligned_cols=167 Identities=25% Similarity=0.291 Sum_probs=117.2
Q ss_pred EEecCCCCCCCCC-CCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCC
Q 040774 218 ISLYDNNISEIPQ-GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQL 296 (1035)
Q Consensus 218 l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 296 (1035)
+++..|.+..+.. .-.++++..+++.. +.+..+... +..+.+|++|++++|.|.++. .+..+..|+.|++.+|.+
T Consensus 77 l~l~~n~i~~~~~~l~~~~~l~~l~l~~--n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 77 LNLRQNLIAKILNHLSKLKSLEALDLYD--NKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI 152 (414)
T ss_pred hccchhhhhhhhcccccccceeeeeccc--cchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheeccCcc
Confidence 3345555554333 23567788888776 556655542 367899999999999999884 467788899999999999
Q ss_pred CCcccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccc
Q 040774 297 EDIRVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSI 375 (1035)
Q Consensus 297 ~~l~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 375 (1035)
+.+..+..++.|+.+++++|.+..+... ...+.+++.+++.+|. +..+.. +..+..+..+++..+.+.
T Consensus 153 ~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~-------- 221 (414)
T KOG0531|consen 153 SDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS-------- 221 (414)
T ss_pred hhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce--------
Confidence 9998888899999999999998877664 5888999999999886 544432 444555555566666654
Q ss_pred cccccCHHhhcCCCC--CCEEEEeecCCCCC
Q 040774 376 ERSNASLVELKNLSR--LTTLEINILDAGIL 404 (1035)
Q Consensus 376 ~~~~~~~~~l~~L~~--L~~L~l~~~~~~~~ 404 (1035)
.+..+..+.. |+.+++.++.....
T Consensus 222 -----~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 222 -----KLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred -----eccCcccchhHHHHHHhcccCccccc
Confidence 2222222222 67777777765544
No 49
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.91 E-value=7.5e-07 Score=104.76 Aligned_cols=122 Identities=23% Similarity=0.252 Sum_probs=72.8
Q ss_pred cCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEecc-ccccccccccccccCCCceeccccCeeecccCCccccccc
Q 040774 627 SVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRC-PHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYP 705 (1035)
Q Consensus 627 ~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c-~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~ 705 (1035)
..+.|+.|.+.+|..+....-..+...++.|++|++++| ........ ........+++|+.|+++.+..+++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPL----LLLLLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchh----HhhhhhhhcCCcCccchhhhhccCchhH
Confidence 356788888888877765332344567788888888774 22111110 0011223457788888888776665554
Q ss_pred CCcccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccCCceeEecccccCc
Q 040774 706 GVHTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDI 777 (1035)
Q Consensus 706 ~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 777 (1035)
......|++|+.|.+.+|..++. .++......+++|++|++++|..+
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~-------------------------~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTD-------------------------EGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHhhCCCcceEccCCCCccch-------------------------hHHHHHHHhcCcccEEeeecCccc
Confidence 44444477888888777776431 122222255777888888877765
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.88 E-value=1.6e-05 Score=56.73 Aligned_cols=39 Identities=38% Similarity=0.555 Sum_probs=20.5
Q ss_pred CCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccC
Q 040774 307 KLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIA 346 (1035)
Q Consensus 307 ~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp 346 (1035)
+|++|++++|+|+.+|..+++|++|++|++++|. ++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4555555555555555555555555555555554 44443
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=5.4e-07 Score=89.71 Aligned_cols=84 Identities=30% Similarity=0.279 Sum_probs=44.9
Q ss_pred CCcEEecccCcCC--cchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHh
Q 040774 307 KLEILSLQASAIE--QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVE 384 (1035)
Q Consensus 307 ~L~~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (1035)
.|++|||+...|+ .+-.-+..+.+|+.|.+.++. +.+--...+++=.+|+.|+++.+.-. .....---
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iAkN~~L~~lnlsm~sG~---------t~n~~~ll 255 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIAKNSNLVRLNLSMCSGF---------TENALQLL 255 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHhccccceeecccccccc---------chhHHHHH
Confidence 3666666666555 344445666666666666665 33222222555666777776665421 00111122
Q ss_pred hcCCCCCCEEEEeecC
Q 040774 385 LKNLSRLTTLEINILD 400 (1035)
Q Consensus 385 l~~L~~L~~L~l~~~~ 400 (1035)
+.+++.|+.|+++|+.
T Consensus 256 ~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCF 271 (419)
T ss_pred HHhhhhHhhcCchHhh
Confidence 4556666666666664
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.76 E-value=1.7e-05 Score=93.66 Aligned_cols=105 Identities=18% Similarity=0.284 Sum_probs=66.2
Q ss_pred CCccEEEecCCCCC--CCCC--CCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcE
Q 040774 213 KKCSRISLYDNNIS--EIPQ--GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRT 288 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~--~l~~--~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 288 (1035)
..++++++++...- .-+. +.-+|.||+|.+.+ ......=....+.++++|+.||+|+++++.+ ..+++|++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 47778888764321 1111 12577888888776 2211111234456778888888888887777 66777888888
Q ss_pred EEcCCCCCCC---cccccCCCCCcEEecccCcCC
Q 040774 289 LCLDSCQLED---IRVIGELRKLEILSLQASAIE 319 (1035)
Q Consensus 289 L~L~~~~l~~---l~~i~~L~~L~~L~L~~~~l~ 319 (1035)
|.+.+=.+.. +..+.+|++|++||+|.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 8777666553 366777777777777776433
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.74 E-value=1.2e-05 Score=94.97 Aligned_cols=134 Identities=18% Similarity=0.223 Sum_probs=103.8
Q ss_pred CCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc--cCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEE
Q 040774 234 CPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL--SLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEIL 311 (1035)
Q Consensus 234 ~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L 311 (1035)
-.+|++|++.|.......-|..+...++.||.|.+++-.+. .+-.-..++++|+.||++++.++.+..+++|++|++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 46899999998544555566677778999999999997764 3344456888999999999999999999999999999
Q ss_pred ecccCcCCcc--hHhhccCCcCCEEcccCCcccccc--Ch---hhhcCCCCCcEEEccCCccc
Q 040774 312 SLQASAIEQL--PMEIGQLTQLKLLDLSNCSKLKVI--AP---NVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 312 ~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~l--p~---~~l~~L~~L~~L~l~~~~~~ 367 (1035)
.+.+=.+..- -..+.+|++|++||+|.......- .. +.-..|++|+.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 9988766643 245789999999999987533221 10 00124899999999998876
No 54
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.73 E-value=1.9e-06 Score=101.27 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=23.8
Q ss_pred ccccccccccccceeccCCceeeCCccCEEEEecCCCcccc
Q 040774 959 LMFLKLHRLQSLTTFCSANYTFKFPSLFYLSVRNCPKMKIF 999 (1035)
Q Consensus 959 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~~ 999 (1035)
++.|.+..|...+.-........+..++.+++.+|+.+..-
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccccch
Confidence 66777777666654433322112556677777777766543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.64 E-value=4.9e-06 Score=85.35 Aligned_cols=83 Identities=24% Similarity=0.331 Sum_probs=40.5
Q ss_pred CCccEEEecCCCCCC-----CCCCC-CCCCcceeeccCCCCCCC----CCChh------hhcCCCCccEEEccCCcCc--
Q 040774 213 KKCSRISLYDNNISE-----IPQGW-ECPQLEFFYNFAPNNSPL----QIPDN------IFIGMPKLKVLDFTRMRLL-- 274 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~~----~i~~~------~f~~~~~Lr~L~Ls~~~i~-- 274 (1035)
+.+..+++++|.+.. +.+.+ .-++||..+++. -..+ .+|+. .+..+++|++||||+|.+.
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd--~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD--MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh--hhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 456677777776541 21111 334555555543 2222 22221 2234456666666666554
Q ss_pred ---cCcccccCCCCCcEEEcCCCCCC
Q 040774 275 ---SLPSSIHLLTDLRTLCLDSCQLE 297 (1035)
Q Consensus 275 ---~lp~~i~~L~~Lr~L~L~~~~l~ 297 (1035)
.+-+-+.+++.|+.|.|.+|.+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCC
Confidence 12223445566666666666554
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.63 E-value=1.5e-06 Score=96.82 Aligned_cols=122 Identities=24% Similarity=0.218 Sum_probs=69.9
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCccc-ccCCCCCcEEEc
Q 040774 214 KCSRISLYDNNISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSS-IHLLTDLRTLCL 291 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L 291 (1035)
.+..++.+.|.+..+-... -++.+++|+++. |....+. .+..+.+|+.|||++|.+..+|.- ...+ +|+.|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh--Nk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSH--NKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccch--hhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 4555555666554443333 245666666665 3333333 345666677777777766666541 2222 3666777
Q ss_pred CCCCCCCcccccCCCCCcEEecccCcCCcch--HhhccCCcCCEEcccCCc
Q 040774 292 DSCQLEDIRVIGELRKLEILSLQASAIEQLP--MEIGQLTQLKLLDLSNCS 340 (1035)
Q Consensus 292 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 340 (1035)
++|.++.+..+.+|++|+.||+++|-+.... .-++.|..|+.|.|.||.
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7666666666666666777777666544221 124556666666666665
No 57
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.62 E-value=1.5e-05 Score=81.83 Aligned_cols=179 Identities=21% Similarity=0.252 Sum_probs=122.3
Q ss_pred CccEEEecCCCCCC--CCC---CC-CCCCcceeeccCCCCCCCCCChhh-------------hcCCCCccEEEccCCcCc
Q 040774 214 KCSRISLYDNNISE--IPQ---GW-ECPQLEFFYNFAPNNSPLQIPDNI-------------FIGMPKLKVLDFTRMRLL 274 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~--l~~---~~-~~~~Lr~L~l~~~~~~~~~i~~~~-------------f~~~~~Lr~L~Ls~~~i~ 274 (1035)
+++.++|++|-+.. ++. .+ .+..|+.|.+.. +..+..-... ...-..|||+....|++.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N--~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN--CGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc--CCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 77888888887652 221 11 578888888875 3332211111 134568999999999886
Q ss_pred cC-----cccccCCCCCcEEEcCCCCCCC--c----ccccCCCCCcEEecccCcCC-----cchHhhccCCcCCEEcccC
Q 040774 275 SL-----PSSIHLLTDLRTLCLDSCQLED--I----RVIGELRKLEILSLQASAIE-----QLPMEIGQLTQLKLLDLSN 338 (1035)
Q Consensus 275 ~l-----p~~i~~L~~Lr~L~L~~~~l~~--l----~~i~~L~~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~ 338 (1035)
.- ...+...+.|+.+.++.|.|.. + ..+..++||++||++.|.++ .+-..+..+++|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 43 3456777889999999988752 2 67888999999999998776 2344567788999999999
Q ss_pred CccccccCh-----hhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCC
Q 040774 339 CSKLKVIAP-----NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAG 402 (1035)
Q Consensus 339 ~~~l~~lp~-----~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 402 (1035)
|. ++.-.. ..-...++|++|.+.+|.++. +........+...+.|..|++++|..+
T Consensus 251 cl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~-------da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 251 CL-LENEGAIAFVDALKESAPSLEVLELAGNEITR-------DAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cc-cccccHHHHHHHHhccCCCCceeccCcchhHH-------HHHHHHHHHHhcchhhHHhcCCccccc
Confidence 86 443221 112236789999999998871 111223344666888999999998764
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.55 E-value=9.2e-06 Score=71.60 Aligned_cols=102 Identities=18% Similarity=0.287 Sum_probs=44.4
Q ss_pred CCccEEEccCCcCccCccc---ccCCCCCcEEEcCCCCCCCc-ccc-cCCCCCcEEecccCcCCcchHhhccCCcCCEEc
Q 040774 261 PKLKVLDFTRMRLLSLPSS---IHLLTDLRTLCLDSCQLEDI-RVI-GELRKLEILSLQASAIEQLPMEIGQLTQLKLLD 335 (1035)
Q Consensus 261 ~~Lr~L~Ls~~~i~~lp~~---i~~L~~Lr~L~L~~~~l~~l-~~i-~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~ 335 (1035)
+-+..+||+.|.+-.+++. +....+|...+|++|.++.+ +.| .+.+-+.+|++++|.++.+|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4455566666655544433 33334444444444444433 111 222344444444444444444444444444444
Q ss_pred ccCCccccccChhhhcCCCCCcEEEccCC
Q 040774 336 LSNCSKLKVIAPNVLSNLSQLEELYMANC 364 (1035)
Q Consensus 336 l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 364 (1035)
++.|. +...|.- +..|.+|-.|+..++
T Consensus 107 l~~N~-l~~~p~v-i~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNP-LNAEPRV-IAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCc-cccchHH-HHHHHhHHHhcCCCC
Confidence 44443 3333333 333444444443333
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.0003 Score=66.91 Aligned_cols=100 Identities=21% Similarity=0.356 Sum_probs=62.9
Q ss_pred CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCccccc-CCCCCcEEEcCCCCCCCc---ccccCCCCCcEE
Q 040774 236 QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIH-LLTDLRTLCLDSCQLEDI---RVIGELRKLEIL 311 (1035)
Q Consensus 236 ~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~-~L~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L 311 (1035)
+...+++.. +....++. |.++..|.+|.+++|+|+.+-..+. -+.+|..|.|.+|.+..+ ..+..++.|++|
T Consensus 43 ~~d~iDLtd--Ndl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTD--NDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccc--cchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 344455553 44444443 5677777777777777777644443 345577777777776544 455566777777
Q ss_pred ecccCcCCcchHh----hccCCcCCEEcccCC
Q 040774 312 SLQASAIEQLPME----IGQLTQLKLLDLSNC 339 (1035)
Q Consensus 312 ~L~~~~l~~lp~~----i~~L~~L~~L~l~~~ 339 (1035)
.+-+|.++..+.. +.++++|++||..+.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777776654432 567777888876653
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.27 E-value=0.00037 Score=66.30 Aligned_cols=103 Identities=23% Similarity=0.310 Sum_probs=63.6
Q ss_pred CCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccC-CCCCcEEecccCcCCcchH--hhccCCcCCEEcc
Q 040774 261 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGE-LRKLEILSLQASAIEQLPM--EIGQLTQLKLLDL 336 (1035)
Q Consensus 261 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~-L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l 336 (1035)
...-.+||++|.+..++ .|..+..|.+|.+..|+|+.+ +.+.. +.+|..|.+.+|.|.++.+ .+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 34556777777766553 355667777777777777766 44543 3457777777777665532 2556667777777
Q ss_pred cCCccccccC---hhhhcCCCCCcEEEccCCc
Q 040774 337 SNCSKLKVIA---PNVLSNLSQLEELYMANCS 365 (1035)
Q Consensus 337 ~~~~~l~~lp---~~~l~~L~~L~~L~l~~~~ 365 (1035)
-+|. +.... .-.+.++++|+.||..+..
T Consensus 121 l~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 121 LGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 6664 33322 1235667777777766554
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.25 E-value=3.2e-05 Score=68.27 Aligned_cols=88 Identities=18% Similarity=0.267 Sum_probs=48.7
Q ss_pred CCCCccEEEccCCcCccCcccccCC-CCCcEEEcCCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcc
Q 040774 259 GMPKLKVLDFTRMRLLSLPSSIHLL-TDLRTLCLDSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDL 336 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~~lp~~i~~L-~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 336 (1035)
+..+|...+|++|.+.++|+.|... +.+.+|++.+|.++++ ..+..++.|+.|+++.|.+...|+-|..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 4445555566666666555554432 2555566666665554 4455556666666666665555555555556655555
Q ss_pred cCCccccccCh
Q 040774 337 SNCSKLKVIAP 347 (1035)
Q Consensus 337 ~~~~~l~~lp~ 347 (1035)
.++. ...+|-
T Consensus 131 ~~na-~~eid~ 140 (177)
T KOG4579|consen 131 PENA-RAEIDV 140 (177)
T ss_pred CCCc-cccCcH
Confidence 5554 444443
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.00014 Score=73.04 Aligned_cols=57 Identities=19% Similarity=0.271 Sum_probs=29.8
Q ss_pred ccEEEccCCcCccCcc--cc-cCCCCCcEEEcCCCCCCCc----ccccCCCCCcEEecccCcCC
Q 040774 263 LKVLDFTRMRLLSLPS--SI-HLLTDLRTLCLDSCQLEDI----RVIGELRKLEILSLQASAIE 319 (1035)
Q Consensus 263 Lr~L~Ls~~~i~~lp~--~i-~~L~~Lr~L~L~~~~l~~l----~~i~~L~~L~~L~L~~~~l~ 319 (1035)
+..|.+.++.|...-+ .| ....+++.|||.+|.|++. ..+.+|++|++|+++.|.+.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 3455555555553321 22 2345666667766666543 33345666666666665543
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.0006 Score=68.57 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=36.8
Q ss_pred CCCccEEEccCCcCcc---CcccccCCCCCcEEEcCCCCCCC-cccc-cCCCCCcEEecccCcCC--cchHhhccCCcCC
Q 040774 260 MPKLKVLDFTRMRLLS---LPSSIHLLTDLRTLCLDSCQLED-IRVI-GELRKLEILSLQASAIE--QLPMEIGQLTQLK 332 (1035)
Q Consensus 260 ~~~Lr~L~Ls~~~i~~---lp~~i~~L~~Lr~L~L~~~~l~~-l~~i-~~L~~L~~L~L~~~~l~--~lp~~i~~L~~L~ 332 (1035)
+.+++.|||.+|.|+. +-.-+.++++|++|+++.|++.. |.+. -.+++|++|-|.|+.+. .....+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4445555555555442 22223345555555555555442 2333 24455555555554333 3333344455555
Q ss_pred EEcccCC
Q 040774 333 LLDLSNC 339 (1035)
Q Consensus 333 ~L~l~~~ 339 (1035)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555444
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.0008 Score=66.79 Aligned_cols=87 Identities=23% Similarity=0.269 Sum_probs=55.6
Q ss_pred CCCCccEEEccCCcCc-----cCcccccCCCCCcEEEcCCCCCCC-----------c-ccccCCCCCcEEecccCcCC-c
Q 040774 259 GMPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDSCQLED-----------I-RVIGELRKLEILSLQASAIE-Q 320 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~-----------l-~~i~~L~~L~~L~L~~~~l~-~ 320 (1035)
.+..+..+|||+|.|. .+...|.+-.+||+.+++.-.... + +.+-++++|+..+||.|.+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4677888888888876 345556667778887776543221 1 45566777777777777554 3
Q ss_pred chH----hhccCCcCCEEcccCCccccccC
Q 040774 321 LPM----EIGQLTQLKLLDLSNCSKLKVIA 346 (1035)
Q Consensus 321 lp~----~i~~L~~L~~L~l~~~~~l~~lp 346 (1035)
.|+ -|+.-+.|.||.+++|. +..+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~a 136 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIA 136 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccc
Confidence 332 35666777777777775 54443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.28 E-value=0.00033 Score=69.67 Aligned_cols=105 Identities=28% Similarity=0.374 Sum_probs=69.4
Q ss_pred CCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccCh-hhhcCCCCCcEEEc
Q 040774 283 LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYM 361 (1035)
Q Consensus 283 L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l 361 (1035)
+.+.+-|+..||.+.++..+.+|+.|++|.|+-|.|+.+- .+..+++|+.|+|..|. +..+.+ .-+.++++|+.|.+
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence 4456667778888888877788888888888888887764 36777888888888776 555543 12567778888887
Q ss_pred cCCccceeeccccccccccCHHhhcCCCCCCEEE
Q 040774 362 ANCSIEWEVLGLSIERSNASLVELKNLSRLTTLE 395 (1035)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 395 (1035)
..|.-.+... ....-..+.-|++|++|+
T Consensus 96 ~ENPCc~~ag------~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAG------QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccc------hhHHHHHHHHcccchhcc
Confidence 7766441110 012234466677777665
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.26 E-value=0.0027 Score=63.53 Aligned_cols=80 Identities=29% Similarity=0.423 Sum_probs=36.4
Q ss_pred CcEEEcCCCCCCCcccccCCCCCcEEecccC--cCC-cchHhhccCCcCCEEcccCCcc--ccccChhhhcCCCCCcEEE
Q 040774 286 LRTLCLDSCQLEDIRVIGELRKLEILSLQAS--AIE-QLPMEIGQLTQLKLLDLSNCSK--LKVIAPNVLSNLSQLEELY 360 (1035)
Q Consensus 286 Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~--l~~lp~~~l~~L~~L~~L~ 360 (1035)
|+.|++.++.++.+..+-.|++|++|.++.| .+. .++.-..++++|++|++++|+. ++.+++ +.++.+|..|+
T Consensus 45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~~Ld 122 (260)
T KOG2739|consen 45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLKSLD 122 (260)
T ss_pred hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchhhhh
Confidence 3333344444444444444445555555544 222 3333334445555555555541 122332 44555556666
Q ss_pred ccCCccc
Q 040774 361 MANCSIE 367 (1035)
Q Consensus 361 l~~~~~~ 367 (1035)
+.+|..+
T Consensus 123 l~n~~~~ 129 (260)
T KOG2739|consen 123 LFNCSVT 129 (260)
T ss_pred cccCCcc
Confidence 6655543
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0045 Score=61.91 Aligned_cols=64 Identities=28% Similarity=0.450 Sum_probs=35.8
Q ss_pred hcCCCCccEEEccCC--cCc-cCcccccCCCCCcEEEcCCCCCCCc---ccccCCCCCcEEecccCcCCc
Q 040774 257 FIGMPKLKVLDFTRM--RLL-SLPSSIHLLTDLRTLCLDSCQLEDI---RVIGELRKLEILSLQASAIEQ 320 (1035)
Q Consensus 257 f~~~~~Lr~L~Ls~~--~i~-~lp~~i~~L~~Lr~L~L~~~~l~~l---~~i~~L~~L~~L~L~~~~l~~ 320 (1035)
|..+++|+.|++|.| ++. .++-...++++|++|++++|+++.+ ....++.+|..|++..|....
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc
Confidence 345666666666666 332 3333344456677777777765544 344455555566666554443
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.82 E-value=0.02 Score=53.06 Aligned_cols=105 Identities=19% Similarity=0.358 Sum_probs=42.0
Q ss_pred CChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hcc
Q 040774 252 IPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQ 327 (1035)
Q Consensus 252 i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~ 327 (1035)
+++.+|..+.+|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..+ ..+.+..+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3444455555555555543 344442 23455555555555443 4433 3445555555555543 33333332 344
Q ss_pred CCcCCEEcccCCccccccChhhhcCCCCCcEEEcc
Q 040774 328 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMA 362 (1035)
Q Consensus 328 L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 362 (1035)
+++|+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 555665555432 444544445554 55555544
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.55 E-value=0.03 Score=51.81 Aligned_cols=116 Identities=19% Similarity=0.340 Sum_probs=63.4
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCc
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLE 309 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~ 309 (1035)
++.+|+.+.+.. ....+....|..+..|+.+.+..+ +..++. .+.++..|+.+.+.. .+..+ ..+....+|+
T Consensus 10 ~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 566788777653 456788888888888999998775 776644 677777899998865 44444 5677788999
Q ss_pred EEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCc
Q 040774 310 ILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLE 357 (1035)
Q Consensus 310 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 357 (1035)
.+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.+.++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 9998764 6666655 5665 888888775 36677777677666653
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.43 E-value=0.0072 Score=35.70 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=17.0
Q ss_pred CccEEEccCCcCccCcccccCC
Q 040774 262 KLKVLDFTRMRLLSLPSSIHLL 283 (1035)
Q Consensus 262 ~Lr~L~Ls~~~i~~lp~~i~~L 283 (1035)
+|++||+++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4788888888888888877653
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0069 Score=35.78 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=12.0
Q ss_pred CCcEEecccCcCCcchHhhcc
Q 040774 307 KLEILSLQASAIEQLPMEIGQ 327 (1035)
Q Consensus 307 ~L~~L~L~~~~l~~lp~~i~~ 327 (1035)
+|++||+++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666666666655443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0031 Score=60.33 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=9.0
Q ss_pred cccccccceEEeecccCcc
Q 040774 871 NTVFQNLETLSAHFCLNLT 889 (1035)
Q Consensus 871 ~~~l~~L~~L~i~~C~~l~ 889 (1035)
+..+++++.|.+.+|..+.
T Consensus 121 L~~l~~i~~l~l~~ck~~d 139 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFD 139 (221)
T ss_pred Hhccchhhhheeccccchh
Confidence 3444444555555554444
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=0.002 Score=64.37 Aligned_cols=98 Identities=22% Similarity=0.226 Sum_probs=51.0
Q ss_pred CccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchH--hhccCCcCCEEcccCC
Q 040774 262 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPM--EIGQLTQLKLLDLSNC 339 (1035)
Q Consensus 262 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~ 339 (1035)
+.+.|++-++.++.+. -..+++.|++|.|+-|.|+.+..+..+++|+.|+|..|.|..+-+ .+.++++|++|-|..|
T Consensus 20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 3444444455444331 123445555555555555555555556666666666665555432 3556666677666655
Q ss_pred ccccccChh----hhcCCCCCcEEE
Q 040774 340 SKLKVIAPN----VLSNLSQLEELY 360 (1035)
Q Consensus 340 ~~l~~lp~~----~l~~L~~L~~L~ 360 (1035)
.....-+.+ .+.-|++|+.|+
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 433332221 244466777665
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.11 E-value=0.022 Score=56.97 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=92.6
Q ss_pred CCccEEEecCCCCCC-----CCCCC-CCCCcceeeccCCCCCCCC----CCh------hhhcCCCCccEEEccCCcCc-c
Q 040774 213 KKCSRISLYDNNISE-----IPQGW-ECPQLEFFYNFAPNNSPLQ----IPD------NIFIGMPKLKVLDFTRMRLL-S 275 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~~~~~~~----i~~------~~f~~~~~Lr~L~Ls~~~i~-~ 275 (1035)
+.+..+++++|.+.. +...+ .-++|+...++. ...+. ++. .++-+|++|+..+||+|.+. .
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 345556677776541 22222 345666665553 22222 111 12356788888888888765 2
Q ss_pred Cc----ccccCCCCCcEEEcCCCCCCCc--cc-------------ccCCCCCcEEecccCcCCcchHh-----hccCCcC
Q 040774 276 LP----SSIHLLTDLRTLCLDSCQLEDI--RV-------------IGELRKLEILSLQASAIEQLPME-----IGQLTQL 331 (1035)
Q Consensus 276 lp----~~i~~L~~Lr~L~L~~~~l~~l--~~-------------i~~L~~L~~L~L~~~~l~~lp~~-----i~~L~~L 331 (1035)
.| +-|++-+.|.+|.+++|.+..+ .- ..+-+.|++.....|++..-|.. +..-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 23 3456667788888887776533 11 22346677777777766654432 2222466
Q ss_pred CEEcccCCccccccChh-------hhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeec
Q 040774 332 KLLDLSNCSKLKVIAPN-------VLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINIL 399 (1035)
Q Consensus 332 ~~L~l~~~~~l~~lp~~-------~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 399 (1035)
+++.+..|. +. |.+ .+..+.+|+.|++..|.++.. .+......+...+.|+.|.+..|
T Consensus 188 k~vki~qNg-Ir--pegv~~L~~~gl~y~~~LevLDlqDNtft~~-------gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 188 KEVKIQQNG-IR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE-------GSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred eeEEeeecC-cC--cchhHHHHHHHHHHhCcceeeeccccchhhh-------hHHHHHHHhcccchhhhccccch
Confidence 677666664 22 211 133456777777777765510 00111233445555666666544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=0.017 Score=55.51 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=11.1
Q ss_pred cccccccccccccccccCce
Q 040774 841 VGKLAQIRYLTLEHLNDLKH 860 (1035)
Q Consensus 841 ~~~l~~L~~L~l~~c~~L~~ 860 (1035)
+.++++++.|.+.+|..+.+
T Consensus 121 L~~l~~i~~l~l~~ck~~dD 140 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDD 140 (221)
T ss_pred Hhccchhhhheeccccchhh
Confidence 33455666666666655544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.90 E-value=0.068 Score=29.18 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=6.3
Q ss_pred CCcEEecccCcCCcch
Q 040774 307 KLEILSLQASAIEQLP 322 (1035)
Q Consensus 307 ~L~~L~L~~~~l~~lp 322 (1035)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 77
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.63 E-value=1 Score=57.56 Aligned_cols=151 Identities=15% Similarity=0.234 Sum_probs=96.2
Q ss_pred eEeCC----CCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHHHHHHhcCCCCC
Q 040774 13 TIGID----VLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKEALRQLKKPSHW 88 (1035)
Q Consensus 13 ~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~~l~~l~~~~~~ 88 (1035)
..+++ +++.+|+.++|....|.... .+...+|.+.|+|.|+++..++..++...... ......+...
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~--- 246 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSPIE----AAESSRLCDDVEGWATALQLIALSARQNNSSL--HDSARRLAGI--- 246 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCCCC----HHHHHHHHHHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCC---
Confidence 34555 89999999999988764322 35668899999999999999988776542100 1111111100
Q ss_pred CccchhhhhhHHHH-HhhhccChhhhhHHHhcccccCCCcccHHHHHHHHHHcCcccCCCcHHHHHHHHHHHHHHHHHhc
Q 040774 89 NFEGVLAKTYSAIE-LSYKYLREEELKQLFLQCSLMGSPQASMQDLLKYAIGLGILKGVSTVEEARDKVNALVDQLKDAC 167 (1035)
Q Consensus 89 ~~~~~~~~i~~~L~-lSY~~Lp~~~lk~cFly~s~Fp~~~~~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~s 167 (1035)
...++...+. --|+.||.+ .+..++..|+++ .|+. ++...-. | . .++ .+.+++|.+++
T Consensus 247 ----~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~--~~~~-~l~~~l~--~---~----~~~----~~~L~~l~~~~ 305 (903)
T PRK04841 247 ----NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR--SMND-ALIVRVT--G---E----ENG----QMRLEELERQG 305 (903)
T ss_pred ----CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc--cCCH-HHHHHHc--C---C----CcH----HHHHHHHHHCC
Confidence 0123443333 337899998 899999999987 3332 2322111 1 1 122 23688999999
Q ss_pred cccc-cc-CcceeehhhhHHHHHHHHHc
Q 040774 168 LLLD-GI-NSYWFSMHDVVSDVAISIAS 193 (1035)
Q Consensus 168 l~~~-~~-~~~~~~mHdl~~dla~~v~~ 193 (1035)
++.. .+ ...+|+.|++++++......
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 8653 22 33579999999999887653
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.39 E-value=0.086 Score=28.79 Aligned_cols=16 Identities=50% Similarity=0.812 Sum_probs=7.7
Q ss_pred CccEEEccCCcCccCc
Q 040774 262 KLKVLDFTRMRLLSLP 277 (1035)
Q Consensus 262 ~Lr~L~Ls~~~i~~lp 277 (1035)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666666666666554
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.79 E-value=0.0069 Score=58.96 Aligned_cols=83 Identities=14% Similarity=0.100 Sum_probs=47.9
Q ss_pred CCCCCcEEEcCCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEE
Q 040774 282 LLTDLRTLCLDSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELY 360 (1035)
Q Consensus 282 ~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 360 (1035)
....-.+||++.|++..+ ..++.++.|..||++.|.+..+|..++.+..++++++..|. ....|.+ .++++.+++++
T Consensus 40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s-~~k~~~~k~~e 117 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS-QKKEPHPKKNE 117 (326)
T ss_pred ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc-ccccCCcchhh
Confidence 334444555555544444 44555555666666666666666666666666666666554 5666655 66666666666
Q ss_pred ccCCcc
Q 040774 361 MANCSI 366 (1035)
Q Consensus 361 l~~~~~ 366 (1035)
..++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 555543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.31 E-value=0.015 Score=56.71 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=60.2
Q ss_pred cCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcc
Q 040774 258 IGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDL 336 (1035)
Q Consensus 258 ~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 336 (1035)
..++...+||++.|++-.+-..|+.++.|.-|+++.|.+..+ .+++.+..++.+++..|..+.+|.+.+++++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 345667777777777776666677777777777777777655 6677777777777777777777777777777777777
Q ss_pred cCCc
Q 040774 337 SNCS 340 (1035)
Q Consensus 337 ~~~~ 340 (1035)
.++.
T Consensus 119 k~~~ 122 (326)
T KOG0473|consen 119 KKTE 122 (326)
T ss_pred ccCc
Confidence 7665
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.86 E-value=0.43 Score=29.46 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=11.0
Q ss_pred CCCcEEecccCcCCcchHh
Q 040774 306 RKLEILSLQASAIEQLPME 324 (1035)
Q Consensus 306 ~~L~~L~L~~~~l~~lp~~ 324 (1035)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666655554
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.86 E-value=0.43 Score=29.46 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=11.0
Q ss_pred CCCcEEecccCcCCcchHh
Q 040774 306 RKLEILSLQASAIEQLPME 324 (1035)
Q Consensus 306 ~~L~~L~L~~~~l~~lp~~ 324 (1035)
.+|++|++++|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555666666666655554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.15 E-value=1 Score=27.79 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=17.2
Q ss_pred CCcCCEEcccCCccccccChhhh
Q 040774 328 LTQLKLLDLSNCSKLKVIAPNVL 350 (1035)
Q Consensus 328 L~~L~~L~l~~~~~l~~lp~~~l 350 (1035)
|++|++|++++|. +..+|++.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 4678888888886 888887744
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.15 E-value=1 Score=27.79 Aligned_cols=22 Identities=41% Similarity=0.638 Sum_probs=17.2
Q ss_pred CCcCCEEcccCCccccccChhhh
Q 040774 328 LTQLKLLDLSNCSKLKVIAPNVL 350 (1035)
Q Consensus 328 L~~L~~L~l~~~~~l~~lp~~~l 350 (1035)
|++|++|++++|. +..+|++.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 4678888888886 888887744
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=81.27 E-value=0.8 Score=28.27 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=13.7
Q ss_pred CCccCEEEEecCCCccc
Q 040774 982 FPSLFYLSVRNCPKMKI 998 (1035)
Q Consensus 982 ~~~L~~L~i~~C~~l~~ 998 (1035)
+|+|++|+|++|++++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 57888888888888764
No 86
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=78.94 E-value=28 Score=37.61 Aligned_cols=136 Identities=13% Similarity=0.100 Sum_probs=77.1
Q ss_pred eeEeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCcc
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKEALRQLKKPSHWNFE 91 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~ 91 (1035)
..+++++++.+|..+++.+.++..... --.+....|++.|+|.|-.+..++..+ |..+. ..+.... ..
T Consensus 152 ~~~~l~~l~~~e~~~il~~~~~~~~~~-~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~-~~~~~~i--t~ 219 (305)
T TIGR00635 152 IILRLEFYTVEELAEIVSRSAGLLNVE-IEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQ-VRGQKII--NR 219 (305)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHH-HcCCCCc--CH
Confidence 578999999999999999998421111 113567889999999996655444322 32211 1111111 01
Q ss_pred chhhhhhHHHHHhhhccChhhhhHHHh-cccccCCCcccHHHHHHHHHHcCcccCCCcHHHHHHHHHHHHH-HHHHhccc
Q 040774 92 GVLAKTYSAIELSYKYLREEELKQLFL-QCSLMGSPQASMQDLLKYAIGLGILKGVSTVEEARDKVNALVD-QLKDACLL 169 (1035)
Q Consensus 92 ~~~~~i~~~L~lSY~~Lp~~~lk~cFl-y~s~Fp~~~~~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~sl~ 169 (1035)
+.-.+++..+..+|..++.++ +.-+. ..+.+.+..+..+++.... | .+...++. .++ .|++++|+
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~-~~~L~al~~~~~~~~~~~~~ia~~l---g-----~~~~~~~~----~~e~~Li~~~li 286 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEID-RKLLSVLIEQFQGGPVGLKTLAAAL---G-----EDADTIED----VYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHhCCCcccHHHHHHHh---C-----CCcchHHH----hhhHHHHHcCCc
Confidence 222334444677788888875 44333 5566664445544433321 1 11223333 466 58999999
Q ss_pred ccc
Q 040774 170 LDG 172 (1035)
Q Consensus 170 ~~~ 172 (1035)
+..
T Consensus 287 ~~~ 289 (305)
T TIGR00635 287 QRT 289 (305)
T ss_pred ccC
Confidence 643
No 87
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=78.07 E-value=65 Score=35.29 Aligned_cols=136 Identities=12% Similarity=0.092 Sum_probs=77.5
Q ss_pred eeEeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHHHHHHhcCCCCCCcc
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKEALRQLKKPSHWNFE 91 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~ 91 (1035)
..+++++++.+|..+++.+.++..... --.+....|++.|+|.|=.+..+...+ ..|..+- ..... ..
T Consensus 173 ~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~---~~~~I--~~ 240 (328)
T PRK00080 173 IVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVK---GDGVI--TK 240 (328)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHc---CCCCC--CH
Confidence 478999999999999999998522111 113578999999999995444433322 2232211 01111 01
Q ss_pred chhhhhhHHHHHhhhccChhhhhHHHh-cccccCCCcccHHHHHHHHHHcCcccCCCcHHHHHHHHHHHHH-HHHHhccc
Q 040774 92 GVLAKTYSAIELSYKYLREEELKQLFL-QCSLMGSPQASMQDLLKYAIGLGILKGVSTVEEARDKVNALVD-QLKDACLL 169 (1035)
Q Consensus 92 ~~~~~i~~~L~lSY~~Lp~~~lk~cFl-y~s~Fp~~~~~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~-~L~~~sl~ 169 (1035)
..-.+....+...|..|+..+ +.-+. ....|++..+..+++.... | ...+.+++. ++ .|++++|+
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~-~~~l~~~~~~~~~~~~~~~~~a~~l---g-----~~~~~~~~~----~e~~Li~~~li 307 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMD-RKYLRTIIEKFGGGPVGLDTLAAAL---G-----EERDTIEDV----YEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHH-HHHHHHHHHHcCCCceeHHHHHHHH---C-----CCcchHHHH----hhHHHHHcCCc
Confidence 222345566677788888774 44443 5666774456655553322 1 112233332 44 67788888
Q ss_pred ccc
Q 040774 170 LDG 172 (1035)
Q Consensus 170 ~~~ 172 (1035)
+..
T Consensus 308 ~~~ 310 (328)
T PRK00080 308 QRT 310 (328)
T ss_pred ccC
Confidence 643
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=74.48 E-value=14 Score=39.14 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=43.6
Q ss_pred eeEeCCCCCHHHHHHHHHHhh---CCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 040774 12 KTIGIDVLSDEEAWTLFKKMA---GDCAENGELKSIATDVAKECGRLPIAIVTLAKAL 66 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L 66 (1035)
..+++++++.+|..+++...+ |......--.+..+.|++.++|.|..|..++..+
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 578999999999999999877 2211111224799999999999999999998877
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=65.32 E-value=3.6 Score=25.34 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=11.9
Q ss_pred CCcEEecccCcCCcchH
Q 040774 307 KLEILSLQASAIEQLPM 323 (1035)
Q Consensus 307 ~L~~L~L~~~~l~~lp~ 323 (1035)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56677777777777775
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=60.59 E-value=7.6 Score=24.04 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=5.0
Q ss_pred CCcEEEcCCCCC
Q 040774 285 DLRTLCLDSCQL 296 (1035)
Q Consensus 285 ~Lr~L~L~~~~l 296 (1035)
+|++|+++.|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 344444444443
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=49.71 E-value=6.7 Score=23.50 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=4.2
Q ss_pred CCcEEecccCcC
Q 040774 307 KLEILSLQASAI 318 (1035)
Q Consensus 307 ~L~~L~L~~~~l 318 (1035)
+|++|++++|.|
T Consensus 3 ~L~~L~l~~n~i 14 (24)
T PF13516_consen 3 NLETLDLSNNQI 14 (24)
T ss_dssp T-SEEE-TSSBE
T ss_pred CCCEEEccCCcC
Confidence 344444444443
No 92
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=44.16 E-value=5.1e+02 Score=29.08 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=78.5
Q ss_pred hcCCeeEeCCCCCHHHHHHHHHHhhC----C-CCCChhhHHHHHHHHHHhCCchhHHHHHHHH--Hhc---C--CChhHH
Q 040774 8 SIGSKTIGIDVLSDEEAWTLFKKMAG----D-CAENGELKSIATDVAKECGRLPIAIVTLAKA--LRN---K--SIVSAW 75 (1035)
Q Consensus 8 ~~~~~~~~l~~L~~~~~~~Lf~~~a~----~-~~~~~~l~~~~~~i~~~c~glPla~~~~g~~--L~~---~--~~~~~W 75 (1035)
..+...+.+.+++.++..+++..++. + ...++.++.+++.++...|..+.|+.++-.. .+. + -+.++.
T Consensus 196 ~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v 275 (394)
T PRK00411 196 VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDV 275 (394)
T ss_pred cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Confidence 33335679999999999999999872 1 1223344445555555567788888776432 221 1 255566
Q ss_pred HHHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhccc--ccC-C-CcccHHHHHHH--HHH--cCcccCCC
Q 040774 76 KEALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCS--LMG-S-PQASMQDLLKY--AIG--LGILKGVS 147 (1035)
Q Consensus 76 ~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s--~Fp-~-~~~~~~~Li~~--w~a--~g~~~~~~ 147 (1035)
+.+++.+. .....-.+..||.+ ++.|++.- ... + ..+...++... .++ .|.-+ .
T Consensus 276 ~~a~~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~--~ 337 (394)
T PRK00411 276 RKAYEKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP--R 337 (394)
T ss_pred HHHHHHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc--C
Confidence 66655331 11234467899987 66666532 222 1 33444444431 112 22111 0
Q ss_pred cHHHHHHHHHHHHHHHHHhccccc
Q 040774 148 TVEEARDKVNALVDQLKDACLLLD 171 (1035)
Q Consensus 148 ~~~~~~~~~~~~~~~L~~~sl~~~ 171 (1035)
....+.+|+++|.+.+++..
T Consensus 338 ----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 338 ----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred ----cHHHHHHHHHHHHhcCCeEE
Confidence 12334557888888888763
No 93
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=40.66 E-value=1.2 Score=51.06 Aligned_cols=40 Identities=18% Similarity=0.072 Sum_probs=20.2
Q ss_pred CCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecC
Q 040774 354 SQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILD 400 (1035)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 400 (1035)
..+++++++.|++... ........+...++++.+.++.|.
T Consensus 262 ~~l~~l~l~~nsi~~~-------~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEK-------GVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhhhhhhhcCCcccc-------chHHHHHHHhhhHHHHHhhcccCc
Confidence 4556666666666510 001122334455566666666655
No 94
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=39.09 E-value=23 Score=22.30 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=6.7
Q ss_pred CccEEEccCCcCc
Q 040774 262 KLKVLDFTRMRLL 274 (1035)
Q Consensus 262 ~Lr~L~Ls~~~i~ 274 (1035)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 95
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=36.53 E-value=1.5e+02 Score=25.71 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhh---C-CCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcC-CChhHHHHHHHHhc
Q 040774 21 DEEAWTLFKKMA---G-DCAENGELKSIATDVAKECGRLPIAIVTLAKALRNK-SIVSAWKEALRQLK 83 (1035)
Q Consensus 21 ~~~~~~Lf~~~a---~-~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~-~~~~~W~~~l~~l~ 83 (1035)
+.|.|++=+..- + +-.+.|.+.+-|-+..++..-.|+|+.++-+.=..- ...+.|..+++.++
T Consensus 23 ~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqElk 90 (108)
T PF02284_consen 23 DIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQELK 90 (108)
T ss_dssp T--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHHHh
Confidence 346666644433 3 567788999999999999999999999997665443 23337888887653
No 96
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=36.52 E-value=1.9e+02 Score=24.83 Aligned_cols=61 Identities=15% Similarity=0.286 Sum_probs=46.5
Q ss_pred HHHHHHHHhh---C-CCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcC-CChhHHHHHHHHhc
Q 040774 23 EAWTLFKKMA---G-DCAENGELKSIATDVAKECGRLPIAIVTLAKALRNK-SIVSAWKEALRQLK 83 (1035)
Q Consensus 23 ~~~~Lf~~~a---~-~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~-~~~~~W~~~l~~l~ 83 (1035)
|.|++=+..- + +-.+.|....-|-+..++....|+|+..+-+.=-+- ...+.|..+++.++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeik 87 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIK 87 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHh
Confidence 7777755443 3 667889999999999999999999999998765332 34567988888664
No 97
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=36.37 E-value=49 Score=33.75 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=31.3
Q ss_pred eeEeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHH
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVT 61 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~ 61 (1035)
..+.+++++.+++++++...+.+...-+.=.+..++|...+||.|-.|.-
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45999999999999999998743211111135569999999999988753
No 98
>PRK06893 DNA replication initiation factor; Validated
Probab=33.75 E-value=93 Score=31.92 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=40.2
Q ss_pred HHHHhhcCC-eeEeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHH
Q 040774 3 RHVLESIGS-KTIGIDVLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAI 59 (1035)
Q Consensus 3 ~~v~~~~~~-~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~ 59 (1035)
.+++.+++. .+++++++++++.|++++++|....-. -=+++.+-|++.+.|-.=++
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~-l~~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE-LSDEVANFLLKRLDRDMHTL 200 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHH
Confidence 466777766 789999999999999999999421111 11467788888887655444
No 99
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=31.07 E-value=5.1 Score=45.96 Aligned_cols=114 Identities=27% Similarity=0.353 Sum_probs=79.0
Q ss_pred CChhhhcCCCCccEEEccCCcCc-----cCcccc----cCCCCCcEEEcCCCCCCCc------ccccCCCC-CcEEeccc
Q 040774 252 IPDNIFIGMPKLKVLDFTRMRLL-----SLPSSI----HLLTDLRTLCLDSCQLEDI------RVIGELRK-LEILSLQA 315 (1035)
Q Consensus 252 i~~~~f~~~~~Lr~L~Ls~~~i~-----~lp~~i----~~L~~Lr~L~L~~~~l~~l------~~i~~L~~-L~~L~L~~ 315 (1035)
+... +....+++++|++.|.+. .++..+ ....++++|++++|.++.. ..+....+ ++.|++..
T Consensus 164 l~~~-L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 164 LAAV-LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHH-HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh
Confidence 4444 345888999999998774 123333 3578899999999987632 45555666 77799999
Q ss_pred CcCC-----cchHhhccC-CcCCEEcccCCccccccCh----hhhcCCCCCcEEEccCCccc
Q 040774 316 SAIE-----QLPMEIGQL-TQLKLLDLSNCSKLKVIAP----NVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 316 ~~l~-----~lp~~i~~L-~~L~~L~l~~~~~l~~lp~----~~l~~L~~L~~L~l~~~~~~ 367 (1035)
|.+. .+...+..+ ..+++++++.|. ++.... ..+.....+++|.+++|.+.
T Consensus 243 n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 243 NKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 8766 234556666 788999999997 433221 12455678899999998876
No 100
>PHA01083 hypothetical protein
Probab=23.29 E-value=1.2e+02 Score=28.21 Aligned_cols=10 Identities=10% Similarity=0.411 Sum_probs=6.2
Q ss_pred CHHHHhhcCC
Q 040774 2 DRHVLESIGS 11 (1035)
Q Consensus 2 ~~~v~~~~~~ 11 (1035)
++++|+.+|+
T Consensus 19 dkqLA~~LGV 28 (149)
T PHA01083 19 YKQIAHDLGV 28 (149)
T ss_pred HHHHHHHhCC
Confidence 3566666666
No 101
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=20.92 E-value=1.6e+02 Score=22.93 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHHhcCCC
Q 040774 41 LKSIATDVAKECGRLPIAIVTLAKALRNKSI 71 (1035)
Q Consensus 41 l~~~~~~i~~~c~glPla~~~~g~~L~~~~~ 71 (1035)
+..+--.|++.|+|++=-+.++-+.|++|++
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~RkTD 33 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRKTD 33 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCc
Confidence 4567788999999999999999999999954
No 102
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.23 E-value=26 Score=39.84 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=7.3
Q ss_pred cCCCCceEEecccC
Q 040774 558 FLPNLKELKTTSTV 571 (1035)
Q Consensus 558 ~l~~L~~L~l~~c~ 571 (1035)
+.|.+..+.+++|.
T Consensus 216 n~p~i~sl~lsnNr 229 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR 229 (585)
T ss_pred CCcceeeeecccch
Confidence 44555555555554
Done!