Query 040774
Match_columns 1035
No_of_seqs 517 out of 4477
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 18:57:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-39 7.7E-44 398.7 34.2 638 213-1000 50-744 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-38 4.8E-43 391.6 34.1 615 235-1003 50-724 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-35 3.9E-40 363.2 43.2 596 216-934 7-618 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-36 3.2E-40 363.9 36.4 596 238-969 7-621 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 8.6E-35 2.9E-39 350.5 33.5 178 216-406 14-198 (606)
6 3t6q_A CD180 antigen; protein- 100.0 3E-34 1E-38 345.8 36.5 175 216-405 15-195 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 7E-34 2.4E-38 342.5 30.6 152 238-405 14-169 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.2E-32 7.6E-37 329.4 35.4 533 238-936 15-558 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1E-30 3.6E-35 325.0 36.6 168 217-400 8-185 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-30 3.9E-35 324.7 36.7 390 213-666 24-437 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-31 1.7E-35 313.8 31.1 487 218-827 10-509 (549)
12 2z63_A TOLL-like receptor 4, v 100.0 7.1E-31 2.4E-35 314.2 32.5 145 218-367 12-162 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 1E-29 3.6E-34 304.0 34.8 487 213-828 28-531 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-30 2.9E-34 303.0 30.6 382 235-723 5-397 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 6.8E-28 2.3E-32 292.7 35.3 142 222-367 40-186 (635)
16 2z7x_B TOLL-like receptor 1, v 100.0 2.8E-28 9.6E-33 287.6 26.5 143 216-366 3-150 (520)
17 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-27 8.7E-32 287.7 31.8 146 247-406 41-190 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-27 7.5E-32 279.9 29.3 140 238-400 3-149 (520)
19 4eco_A Uncharacterized protein 100.0 3.1E-27 1.1E-31 283.5 23.7 366 252-726 198-600 (636)
20 4eco_A Uncharacterized protein 99.9 3.1E-27 1.1E-31 283.5 23.0 158 235-406 81-322 (636)
21 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-26 6.4E-31 274.1 28.5 126 261-401 52-181 (562)
22 4ecn_A Leucine-rich repeat pro 99.9 8.7E-27 3E-31 283.2 26.0 365 252-726 440-840 (876)
23 4ecn_A Leucine-rich repeat pro 99.9 6.1E-27 2.1E-31 284.6 23.5 109 792-910 729-838 (876)
24 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-26 4.2E-31 275.7 25.2 145 214-366 32-181 (562)
25 1o6v_A Internalin A; bacterial 99.9 4E-24 1.4E-28 247.5 30.3 168 213-403 46-213 (466)
26 1jl5_A Outer protein YOPM; leu 99.9 1.3E-24 4.5E-29 248.7 21.1 150 230-405 6-169 (454)
27 1o6v_A Internalin A; bacterial 99.9 1E-23 3.5E-28 244.0 27.4 343 233-724 44-386 (466)
28 1jl5_A Outer protein YOPM; leu 99.9 2.4E-24 8.3E-29 246.5 19.3 94 259-367 9-104 (454)
29 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-23 9.7E-28 237.8 27.7 102 258-367 39-140 (457)
30 3v47_A TOLL-like receptor 5B a 99.9 1.1E-23 3.9E-28 243.8 24.8 173 217-405 14-196 (455)
31 2a5y_B CED-4; apoptosis; HET: 99.9 1.3E-25 4.4E-30 263.4 7.4 179 1-196 273-472 (549)
32 4fmz_A Internalin; leucine ric 99.9 2.1E-23 7.2E-28 231.9 24.3 147 234-401 43-189 (347)
33 3o6n_A APL1; leucine-rich repe 99.9 5.9E-23 2E-27 232.1 24.4 153 231-400 41-197 (390)
34 4fmz_A Internalin; leucine ric 99.9 3.7E-22 1.3E-26 221.9 28.1 169 213-402 44-212 (347)
35 2id5_A Lingo-1, leucine rich r 99.9 1.9E-22 6.6E-27 234.7 26.4 172 216-402 14-189 (477)
36 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-22 1.1E-26 229.1 27.4 257 213-572 42-298 (457)
37 3v47_A TOLL-like receptor 5B a 99.9 1.6E-22 5.5E-27 234.1 25.1 378 239-726 14-408 (455)
38 2id5_A Lingo-1, leucine rich r 99.9 3.7E-22 1.3E-26 232.3 24.7 314 238-666 14-331 (477)
39 3oja_B Anopheles plasmodium-re 99.9 3.1E-22 1.1E-26 238.9 24.5 153 231-400 47-203 (597)
40 3o6n_A APL1; leucine-rich repe 99.9 7.2E-22 2.5E-26 223.2 21.3 167 213-401 45-217 (390)
41 3oja_B Anopheles plasmodium-re 99.9 4.2E-21 1.4E-25 229.1 21.5 167 213-401 51-223 (597)
42 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-20 1E-24 204.8 22.8 152 236-405 34-188 (332)
43 1xku_A Decorin; proteoglycan, 99.8 1.3E-19 4.4E-24 199.5 25.7 153 236-405 32-187 (330)
44 1xku_A Decorin; proteoglycan, 99.8 2.4E-19 8.3E-24 197.3 26.3 171 214-404 32-207 (330)
45 2ft3_A Biglycan; proteoglycan, 99.8 8.4E-20 2.9E-24 201.1 22.3 235 214-517 34-274 (332)
46 4fcg_A Uncharacterized protein 99.8 4E-20 1.4E-24 202.3 17.9 131 260-403 80-220 (328)
47 4fcg_A Uncharacterized protein 99.8 5.3E-20 1.8E-24 201.4 17.2 172 213-400 81-264 (328)
48 3ogk_B Coronatine-insensitive 99.8 9.7E-21 3.3E-25 227.2 10.4 223 476-724 70-304 (592)
49 1ogq_A PGIP-2, polygalacturona 99.8 4.8E-20 1.6E-24 200.6 15.0 243 213-518 50-302 (313)
50 3zyj_A Leucine-rich repeat-con 99.8 7.1E-19 2.4E-23 201.7 21.2 175 214-404 44-222 (440)
51 2z66_A Variable lymphocyte rec 99.8 3.6E-19 1.2E-23 193.7 17.4 173 217-403 11-189 (306)
52 3zyi_A Leucine-rich repeat-con 99.8 7.4E-19 2.5E-23 202.4 20.8 175 214-404 55-233 (452)
53 2z80_A TOLL-like receptor 2, v 99.8 1.7E-19 5.7E-24 200.6 13.8 175 217-405 35-214 (353)
54 3ogk_B Coronatine-insensitive 99.8 3.8E-20 1.3E-24 222.0 8.4 127 259-398 110-252 (592)
55 1ogq_A PGIP-2, polygalacturona 99.8 2.9E-19 9.8E-24 194.4 11.8 220 235-517 50-278 (313)
56 2p1m_B Transport inhibitor res 99.8 4.2E-20 1.4E-24 221.8 5.5 172 476-665 63-245 (594)
57 2z80_A TOLL-like receptor 2, v 99.8 2.2E-18 7.4E-23 191.6 17.5 153 233-402 29-187 (353)
58 1ozn_A Reticulon 4 receptor; N 99.8 4.8E-18 1.6E-22 182.6 19.3 172 216-402 14-190 (285)
59 1vt4_I APAF-1 related killer D 99.8 4.1E-19 1.4E-23 209.3 10.7 155 1-189 273-437 (1221)
60 3zyj_A Leucine-rich repeat-con 99.8 9.3E-18 3.2E-22 192.5 20.9 226 207-490 55-290 (440)
61 2p1m_B Transport inhibitor res 99.8 1.2E-19 4E-24 218.0 5.2 237 450-723 63-324 (594)
62 3sfz_A APAF-1, apoptotic pepti 99.8 1.6E-18 5.5E-23 227.3 16.3 178 1-195 265-452 (1249)
63 1z7x_W Ribonuclease inhibitor; 99.8 4.5E-20 1.5E-24 214.0 1.1 158 235-401 3-182 (461)
64 2z66_A Variable lymphocyte rec 99.8 7.2E-18 2.4E-22 183.4 18.4 178 213-406 28-216 (306)
65 3zyi_A Leucine-rich repeat-con 99.8 1.1E-17 3.7E-22 192.6 20.8 177 213-405 75-258 (452)
66 3g06_A SSPH2 (leucine-rich rep 99.8 2.7E-17 9.1E-22 193.6 24.3 134 214-367 41-174 (622)
67 3g06_A SSPH2 (leucine-rich rep 99.8 3.9E-17 1.3E-21 192.2 25.7 156 213-404 61-216 (622)
68 2o6q_A Variable lymphocyte rec 99.8 2.1E-17 7.1E-22 175.8 20.4 179 214-407 17-199 (270)
69 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-17 4.8E-22 179.0 19.2 180 213-406 32-218 (285)
70 1z7x_W Ribonuclease inhibitor; 99.7 1.5E-19 5.3E-24 209.5 -0.9 385 214-667 4-439 (461)
71 1p9a_G Platelet glycoprotein I 99.7 6.2E-17 2.1E-21 173.4 18.6 179 213-407 10-190 (290)
72 2z62_A TOLL-like receptor 4, v 99.7 5E-17 1.7E-21 173.7 17.8 176 218-406 12-194 (276)
73 1p9a_G Platelet glycoprotein I 99.7 7.2E-17 2.5E-21 172.9 17.5 198 233-490 8-206 (290)
74 2o6q_A Variable lymphocyte rec 99.7 2E-16 6.8E-21 168.2 19.9 175 213-401 37-217 (270)
75 1h6u_A Internalin H; cell adhe 99.7 3.1E-16 1.1E-20 169.9 19.8 187 213-421 41-227 (308)
76 3m19_A Variable lymphocyte rec 99.7 2.2E-16 7.6E-21 165.8 17.8 175 214-403 15-193 (251)
77 3o53_A Protein LRIM1, AGAP0063 99.7 9E-18 3.1E-22 183.2 7.4 239 214-522 35-277 (317)
78 2z62_A TOLL-like receptor 4, v 99.7 1.2E-16 4.1E-21 170.7 15.9 180 213-407 28-218 (276)
79 1h6u_A Internalin H; cell adhe 99.7 1.6E-16 5.3E-21 172.2 16.3 151 233-405 39-189 (308)
80 2xwt_C Thyrotropin receptor; s 99.7 9.7E-17 3.3E-21 167.3 13.0 138 225-367 23-169 (239)
81 3o53_A Protein LRIM1, AGAP0063 99.7 1.6E-17 5.4E-22 181.3 5.8 134 248-400 21-155 (317)
82 3rfs_A Internalin B, repeat mo 99.7 4.4E-16 1.5E-20 165.6 15.8 154 233-403 39-195 (272)
83 3oja_A Leucine-rich immune mol 99.7 2.8E-16 9.6E-21 181.5 14.2 148 235-402 34-182 (487)
84 2xwt_C Thyrotropin receptor; s 99.7 2.3E-16 7.9E-21 164.4 12.1 191 213-418 31-233 (239)
85 1h6t_A Internalin B; cell adhe 99.7 1.1E-15 3.7E-20 163.9 17.7 171 213-405 46-216 (291)
86 1z6t_A APAF-1, apoptotic prote 99.7 5.1E-16 1.7E-20 185.3 16.0 175 1-192 265-449 (591)
87 3rfs_A Internalin B, repeat mo 99.7 1.6E-15 5.5E-20 161.2 18.2 173 213-401 41-217 (272)
88 1wwl_A Monocyte differentiatio 99.7 2.6E-16 8.7E-21 171.2 12.0 109 259-367 93-214 (312)
89 1wwl_A Monocyte differentiatio 99.6 8.5E-17 2.9E-21 175.0 5.7 154 233-402 41-214 (312)
90 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.9E-20 176.5 13.3 211 213-490 34-248 (487)
91 4ay9_X Follicle-stimulating ho 99.6 3.1E-15 1E-19 165.5 15.2 148 217-367 13-167 (350)
92 3m19_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 152.7 18.2 152 213-367 35-192 (251)
93 3e6j_A Variable lymphocyte rec 99.6 1.2E-14 4E-19 149.9 16.6 148 216-367 22-172 (229)
94 2v9t_B SLIT homolog 2 protein 99.6 9E-15 3.1E-19 149.6 15.1 148 216-367 14-165 (220)
95 2o6s_A Variable lymphocyte rec 99.6 5.9E-15 2E-19 150.0 13.7 170 216-407 10-184 (208)
96 1h6t_A Internalin B; cell adhe 99.6 1E-14 3.5E-19 156.4 15.0 167 233-421 44-210 (291)
97 1m9s_A Internalin B; cell inva 99.6 9.7E-15 3.3E-19 171.7 15.1 171 213-405 43-213 (605)
98 2v70_A SLIT-2, SLIT homolog 2 99.6 1.9E-14 6.4E-19 147.2 14.7 148 216-367 14-166 (220)
99 1xeu_A Internalin C; cellular 99.6 6.3E-15 2.2E-19 155.3 10.8 166 217-405 23-188 (263)
100 4glp_A Monocyte differentiatio 99.6 2.8E-15 9.5E-20 162.9 8.1 109 258-367 114-237 (310)
101 4ay9_X Follicle-stimulating ho 99.6 2.8E-14 9.4E-19 157.8 16.2 153 238-407 12-172 (350)
102 4glp_A Monocyte differentiatio 99.5 2.5E-14 8.7E-19 155.3 14.2 176 213-405 91-288 (310)
103 1m9s_A Internalin B; cell inva 99.5 2.1E-14 7.3E-19 168.8 14.0 153 231-405 39-191 (605)
104 4ezg_A Putative uncharacterize 99.5 4.3E-14 1.5E-18 142.0 14.1 146 213-366 44-193 (197)
105 2xot_A Amphoterin-induced prot 99.5 3E-14 1E-18 158.2 13.7 170 216-400 21-200 (361)
106 4ezg_A Putative uncharacterize 99.5 3.4E-14 1.2E-18 142.7 12.6 150 233-402 42-194 (197)
107 2ast_B S-phase kinase-associat 99.5 4E-15 1.4E-19 164.2 6.1 128 261-399 70-205 (336)
108 2v9t_B SLIT homolog 2 protein 99.5 5.2E-14 1.8E-18 143.9 13.5 147 238-401 14-164 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.5 9.1E-14 3.1E-18 142.1 13.7 147 238-401 14-165 (220)
110 2ell_A Acidic leucine-rich nuc 99.5 8.5E-14 2.9E-18 136.0 12.4 137 259-407 22-165 (168)
111 3cvr_A Invasion plasmid antige 99.5 2.2E-13 7.5E-18 158.2 17.6 161 214-407 60-225 (571)
112 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 141.7 14.0 148 237-402 21-172 (229)
113 1xeu_A Internalin C; cellular 99.5 2.1E-13 7.3E-18 143.6 14.8 145 213-367 41-185 (263)
114 2o6s_A Variable lymphocyte rec 99.5 2.1E-13 7.3E-18 138.4 14.4 146 238-400 10-159 (208)
115 2ast_B S-phase kinase-associat 99.5 2.1E-14 7.3E-19 158.3 6.6 173 214-399 71-257 (336)
116 2xot_A Amphoterin-induced prot 99.5 1.6E-13 5.5E-18 152.3 13.0 158 207-367 30-202 (361)
117 2ca6_A RAN GTPase-activating p 99.5 1.6E-14 5.5E-19 162.5 3.5 180 214-401 33-256 (386)
118 2ca6_A RAN GTPase-activating p 99.4 5.2E-14 1.8E-18 158.3 6.7 142 251-401 23-199 (386)
119 2je0_A Acidic leucine-rich nuc 99.4 2.3E-13 7.9E-18 129.8 10.0 127 259-397 15-148 (149)
120 3cvr_A Invasion plasmid antige 99.4 1.1E-12 3.9E-17 152.1 15.9 157 213-402 80-243 (571)
121 3goz_A Leucine-rich repeat-con 99.4 1.2E-13 4.2E-18 153.5 6.6 127 237-367 24-180 (362)
122 2wfh_A SLIT homolog 2 protein 99.4 1.6E-12 5.4E-17 129.6 12.9 123 239-367 14-139 (193)
123 3goz_A Leucine-rich repeat-con 99.4 9.5E-14 3.3E-18 154.4 4.0 141 255-403 16-181 (362)
124 1a9n_A U2A', U2A'; complex (nu 99.4 7E-13 2.4E-17 130.4 9.4 130 257-400 15-151 (176)
125 2ell_A Acidic leucine-rich nuc 99.4 9.1E-13 3.1E-17 128.6 9.6 128 235-367 24-160 (168)
126 2je0_A Acidic leucine-rich nuc 99.4 1.1E-12 3.7E-17 125.1 9.6 124 235-362 17-148 (149)
127 1w8a_A SLIT protein; signaling 99.4 2.2E-12 7.6E-17 128.6 11.6 123 239-367 12-139 (192)
128 4b8c_D Glucose-repressible alc 99.4 1.1E-12 3.8E-17 158.5 11.2 152 213-367 173-329 (727)
129 1w8a_A SLIT protein; signaling 99.4 2.1E-12 7.3E-17 128.8 11.0 125 264-402 11-139 (192)
130 2wfh_A SLIT homolog 2 protein 99.3 7.7E-12 2.6E-16 124.6 12.5 124 264-401 13-138 (193)
131 1a9n_A U2A', U2A'; complex (nu 99.3 3.1E-12 1.1E-16 125.7 8.9 131 232-367 16-153 (176)
132 2o6r_A Variable lymphocyte rec 99.3 2.9E-11 9.8E-16 119.0 13.3 117 247-367 17-137 (177)
133 1ds9_A Outer arm dynein; leuci 99.3 5E-13 1.7E-17 134.3 0.3 155 236-395 24-180 (198)
134 2o6r_A Variable lymphocyte rec 99.2 4.2E-11 1.4E-15 117.8 13.2 122 216-340 10-135 (177)
135 4b8c_D Glucose-repressible alc 99.2 1.8E-12 6E-17 156.8 2.5 131 233-367 222-354 (727)
136 1dce_A Protein (RAB geranylger 99.2 3.4E-11 1.2E-15 140.8 12.2 123 262-396 442-567 (567)
137 1dce_A Protein (RAB geranylger 99.2 4.8E-11 1.7E-15 139.5 12.8 188 214-416 350-565 (567)
138 2r9u_A Variable lymphocyte rec 99.2 9.2E-11 3.1E-15 114.4 11.0 101 264-367 15-118 (174)
139 3g39_A Variable lymphocyte rec 99.2 9.9E-11 3.4E-15 113.9 10.9 103 262-367 10-115 (170)
140 1ds9_A Outer arm dynein; leuci 99.1 1.2E-12 4.1E-17 131.5 -4.0 147 214-367 24-185 (198)
141 2r9u_A Variable lymphocyte rec 99.1 5.9E-10 2E-14 108.7 10.9 102 239-346 16-121 (174)
142 3g39_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 105.3 11.5 98 238-340 12-113 (170)
143 3sb4_A Hypothetical leucine ri 99.0 1E-09 3.4E-14 120.0 11.2 156 234-406 100-314 (329)
144 3sb4_A Hypothetical leucine ri 98.9 4.3E-09 1.5E-13 114.9 11.7 96 213-315 49-157 (329)
145 4fdw_A Leucine rich hypothetic 98.8 2.9E-07 1E-11 102.5 21.4 121 235-364 113-236 (401)
146 2ifg_A High affinity nerve gro 98.8 1.3E-08 4.6E-13 112.1 9.7 100 265-367 12-116 (347)
147 4fdw_A Leucine rich hypothetic 98.7 3.7E-07 1.3E-11 101.6 17.7 232 214-517 114-355 (401)
148 3un9_A NLR family member X1; l 98.7 4.1E-09 1.4E-13 116.3 1.3 153 213-367 72-252 (372)
149 2ifg_A High affinity nerve gro 98.6 8.3E-08 2.8E-12 105.7 9.6 98 240-340 13-114 (347)
150 3un9_A NLR family member X1; l 98.5 1.1E-08 3.7E-13 112.9 0.5 160 234-403 71-253 (372)
151 3e4g_A ATP synthase subunit S, 98.3 3.1E-07 1.1E-11 87.3 4.0 92 900-998 62-154 (176)
152 3e4g_A ATP synthase subunit S, 98.2 9.9E-07 3.4E-11 83.8 5.2 69 897-972 83-154 (176)
153 4fs7_A Uncharacterized protein 98.1 0.00011 3.8E-09 82.0 21.0 62 251-314 61-125 (394)
154 2ra8_A Uncharacterized protein 98.0 3.3E-06 1.1E-10 92.1 6.0 158 233-401 137-319 (362)
155 1io0_A Tropomodulin; LRR prote 98.0 3.7E-06 1.3E-10 82.4 5.5 112 255-367 30-164 (185)
156 2ra8_A Uncharacterized protein 97.8 1.3E-05 4.4E-10 87.4 6.0 128 233-367 170-320 (362)
157 4fs7_A Uncharacterized protein 97.8 0.00048 1.7E-08 76.7 18.5 56 233-292 69-125 (394)
158 3rw6_A Nuclear RNA export fact 97.8 7.6E-06 2.6E-10 84.2 2.8 61 259-319 168-233 (267)
159 3rw6_A Nuclear RNA export fact 97.8 2.6E-05 9E-10 80.2 6.4 104 257-361 137-258 (267)
160 1io0_A Tropomodulin; LRR prote 97.7 1.8E-05 6E-10 77.6 4.2 117 276-401 28-163 (185)
161 4gt6_A Cell surface protein; l 97.4 0.014 4.9E-07 64.6 23.7 121 236-364 65-192 (394)
162 4gt6_A Cell surface protein; l 96.8 0.027 9.3E-07 62.4 17.9 142 214-361 65-212 (394)
163 4h09_A Hypothetical leucine ri 95.8 0.021 7.3E-07 62.9 9.4 104 255-362 211-318 (379)
164 3rfe_A Platelet glycoprotein I 95.2 0.029 1E-06 50.5 6.2 51 265-317 12-66 (130)
165 2qen_A Walker-type ATPase; unk 94.7 0.46 1.6E-05 51.2 15.6 148 12-187 196-347 (350)
166 4h09_A Hypothetical leucine ri 94.6 0.12 4E-06 56.8 10.7 105 252-360 231-339 (379)
167 1pgv_A TMD-1, tropomodulin TMD 94.6 0.048 1.7E-06 52.6 6.3 83 257-339 37-136 (197)
168 3rfe_A Platelet glycoprotein I 94.6 0.036 1.2E-06 49.9 5.1 55 310-367 12-68 (130)
169 2fna_A Conserved hypothetical 94.0 0.43 1.5E-05 51.6 13.3 147 12-187 202-355 (357)
170 1pgv_A TMD-1, tropomodulin TMD 91.8 0.15 5E-06 49.3 4.8 83 257-339 66-167 (197)
171 1w5s_A Origin recognition comp 91.4 1 3.5E-05 49.8 12.0 151 13-184 209-387 (412)
172 1hqc_A RUVB; extended AAA-ATPa 83.9 1.3 4.5E-05 47.0 6.4 52 12-66 161-214 (324)
173 1njg_A DNA polymerase III subu 56.5 21 0.00072 35.1 7.4 53 12-67 178-232 (250)
174 2v1u_A Cell division control p 51.5 1.3E+02 0.0044 31.9 13.3 143 5-171 187-350 (387)
175 2qby_B CDC6 homolog 3, cell di 45.2 3E+02 0.01 29.0 15.0 135 12-171 190-338 (384)
176 1v54_E Cytochrome C oxidase po 33.3 95 0.0033 25.7 5.9 61 23-83 25-90 (109)
177 2qby_A CDC6 homolog 1, cell di 32.1 4.6E+02 0.016 27.3 14.0 136 12-171 190-347 (386)
178 2vda_B Maltoporin; sugar trans 31.1 19 0.00067 20.6 1.1 19 51-69 7-25 (28)
179 1fnn_A CDC6P, cell division co 26.5 5.7E+02 0.019 26.7 15.6 159 12-194 186-386 (389)
180 2y69_E Cytochrome C oxidase su 23.0 1.7E+02 0.0057 25.8 5.9 50 34-83 83-133 (152)
181 2kz2_A Calmodulin, CAM; TR2C, 21.2 3.1E+02 0.011 21.7 8.0 58 59-118 15-72 (94)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-39 Score=398.66 Aligned_cols=638 Identities=16% Similarity=0.079 Sum_probs=399.5
Q ss_pred CCccEEEecCCCCCC----CCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-cCcc--cccCCC
Q 040774 213 KKCSRISLYDNNISE----IPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-SLPS--SIHLLT 284 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~----l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-~lp~--~i~~L~ 284 (1035)
.+++.++++++.+.. ++..+ .+++|+.+++.. +....+|.. |.++++|++|||++|.+. .+|. .+++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~--~~~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~ 126 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSN--SHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTT--SCEEECCCC-CCCCTTCCEEECCSSEEEEEGGGGGGGGGCT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcC--CCcCCCchh-hccCCCCCEEECCCCcCCCcCCChHHHhCCC
Confidence 578888888877653 44333 667777777765 333334444 578888999999888887 4676 888888
Q ss_pred CCcEEEcCCCCCCCc--c-cccCCCCCcEEecccCcCCcc-hHh---hccCCcCCEEcccCCccccccChhhhcCCCCCc
Q 040774 285 DLRTLCLDSCQLEDI--R-VIGELRKLEILSLQASAIEQL-PME---IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLE 357 (1035)
Q Consensus 285 ~Lr~L~L~~~~l~~l--~-~i~~L~~L~~L~L~~~~l~~l-p~~---i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 357 (1035)
+|++|++++|.+... . .++++++|++|++++|.++.. |.. ++++++|++|++++|. +....+ ++++++|+
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~ 203 (768)
T 3rgz_A 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK-ISGDVD--VSRCVNLE 203 (768)
T ss_dssp TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE-EESCCB--CTTCTTCC
T ss_pred CCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc-ccccCC--cccCCcCC
Confidence 899999988887643 3 337888899999988888744 444 6788888899888887 554443 47888888
Q ss_pred EEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCC-CCCccccccccEEEEEEccccccCCcccccchh
Q 040774 358 ELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGI-LPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTL 436 (1035)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~-~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l 436 (1035)
+|++++|.+. . .+..++++++|++|++++|.... +|..
T Consensus 204 ~L~Ls~n~l~-----------~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----------------------------- 242 (768)
T 3rgz_A 204 FLDVSSNNFS-----------T-GIPFLGDCSALQHLDISGNKLSGDFSRA----------------------------- 242 (768)
T ss_dssp EEECCSSCCC-----------S-CCCBCTTCCSCCEEECCSSCCCSCHHHH-----------------------------
T ss_pred EEECcCCcCC-----------C-CCcccccCCCCCEEECcCCcCCCcccHH-----------------------------
Confidence 8888888876 2 22337888888888888877432 2211
Q ss_pred hhccCCceeeccccCccccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeeccc
Q 040774 437 KLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQS 516 (1035)
Q Consensus 437 ~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 516 (1035)
+.++++|++|+++++... ...+.. .+++|++|++++|.-...++ ......+++|++|++.+
T Consensus 243 ------------l~~l~~L~~L~Ls~n~l~-~~~~~~---~l~~L~~L~L~~n~l~~~ip---~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 243 ------------ISTCTELKLLNISSNQFV-GPIPPL---PLKSLQYLSLAENKFTGEIP---DFLSGACDTLTGLDLSG 303 (768)
T ss_dssp ------------TTTCSSCCEEECCSSCCE-ESCCCC---CCTTCCEEECCSSEEEESCC---CCSCTTCTTCSEEECCS
T ss_pred ------------HhcCCCCCEEECCCCccc-CccCcc---ccCCCCEEECcCCccCCccC---HHHHhhcCcCCEEECcC
Confidence 445567777777776432 223322 47788888888776211111 11223347888888877
Q ss_pred ccccccccccccccCCCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccc
Q 040774 517 LINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEK 596 (1035)
Q Consensus 517 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~ 596 (1035)
+.--..+ +...+.+++|++|++.+|.-...++ ...+..+++|++|++++|..... +...+.
T Consensus 304 n~l~~~~---p~~~~~l~~L~~L~L~~n~l~~~ip-~~~l~~l~~L~~L~Ls~n~l~~~---~p~~l~------------ 364 (768)
T 3rgz_A 304 NHFYGAV---PPFFGSCSLLESLALSSNNFSGELP-MDTLLKMRGLKVLDLSFNEFSGE---LPESLT------------ 364 (768)
T ss_dssp SEEEECC---CGGGGGCTTCCEEECCSSEEEEECC-HHHHTTCTTCCEEECCSSEEEEC---CCTTHH------------
T ss_pred CcCCCcc---chHHhcCCCccEEECCCCcccCcCC-HHHHhcCCCCCEEeCcCCccCcc---ccHHHH------------
Confidence 6422222 1224567788888888764322333 22356788888888888764211 111111
Q ss_pred cccC-CcceeeccccccccccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEecccccccccccc
Q 040774 597 LVLP-KLEVLELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKE 675 (1035)
Q Consensus 597 ~~~~-~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~ 675 (1035)
.++ +|+.|++++|.+......... ...+++|+.|++.+| .++...|.. +..+++|+.|++++|.....++
T Consensus 365 -~l~~~L~~L~Ls~N~l~~~~~~~~~---~~~~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~~p--- 435 (768)
T 3rgz_A 365 -NLSASLLTLDLSSNNFSGPILPNLC---QNPKNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFNYLSGTIP--- 435 (768)
T ss_dssp -HHTTTCSEEECCSSEEEEECCTTTT---CSTTCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSSEEESCCC---
T ss_pred -hhhcCCcEEEccCCCcCCCcChhhh---hcccCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCCcccCccc---
Confidence 134 788888888866532221111 012567888888888 455444433 4778888888888875322222
Q ss_pred ccccCCCceeccccCeeecccCCcccccccCCcccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCC
Q 040774 676 SGVEADPSFVFPRLTILKLHYLPELRAFYPGVHTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRP 755 (1035)
Q Consensus 676 ~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (1035)
.....+++|+.|+++++.-...++... ..+++|++|++++|.....+|...
T Consensus 436 -----~~l~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l---------------------- 486 (768)
T 3rgz_A 436 -----SSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTGEIPSGL---------------------- 486 (768)
T ss_dssp -----GGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGG----------------------
T ss_pred -----HHHhcCCCCCEEECCCCcccCcCCHHH--cCCCCceEEEecCCcccCcCCHHH----------------------
Confidence 234456788888888865433444322 236788888888876443332211
Q ss_pred ccccccccCCceeEecccccCccccccCCCCcccCCCccEEEeecCCCcCCCchHHhhcCCceEEEEEeCccceecccCC
Q 040774 756 LFLVEKVLPSLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAYGSYKELFSNEG 835 (1035)
Q Consensus 756 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~c~~l~~l~~~~~ 835 (1035)
..+++|+.|++++|. ++...+..+ ..+++|+.|++++|.+....+..+..+++|+.|+++.|.+....
T Consensus 487 -----~~l~~L~~L~L~~N~-l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i---- 554 (768)
T 3rgz_A 487 -----SNCTNLNWISLSNNR-LTGEIPKWI--GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI---- 554 (768)
T ss_dssp -----GGCTTCCEEECCSSC-CCSCCCGGG--GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC----
T ss_pred -----hcCCCCCEEEccCCc-cCCcCChHH--hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC----
Confidence 347788888888666 332222222 45778888888666555333345577888888888866665221
Q ss_pred cccccccccccccccccc-----------------------------------ccccCce-----eeeccCCCccccccc
Q 040774 836 QVETHVGKLAQIRYLTLE-----------------------------------HLNDLKH-----LWLWEQNSKLNTVFQ 875 (1035)
Q Consensus 836 ~~~~~~~~l~~L~~L~l~-----------------------------------~c~~L~~-----L~i~~~~~~~~~~l~ 875 (1035)
|..+.....+..+.+. .++.+.. -.+.+..+..+..++
T Consensus 555 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 555 --PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp --CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred --ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 1111111111111111 1111110 012223355567788
Q ss_pred ccceEEeecccCccccCCCcccccCccEEEeccCCCCcchhhhhhhhcccccceEeeccccccceeeccccccCCCCccc
Q 040774 876 NLETLSAHFCLNLTNLMPSSASFRCLKELRVCACEHLMNLVASSAAKNLVQLVRMTVRECNKITELVVASEGDAANDEII 955 (1035)
Q Consensus 876 ~L~~L~i~~C~~l~~l~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~ 955 (1035)
+|+.|+++++.--..+|..++.+++|+.|+++++. ++..+ +..++++++|+.|+++++ +++...|.. ...
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~i-p~~l~~L~~L~~LdLs~N-~l~g~ip~~-------l~~ 702 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-ISGSI-PDEVGDLRGLNILDLSSN-KLDGRIPQA-------MSA 702 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECCSS-CCEECCCGG-------GGG
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCc-cCCCC-ChHHhCCCCCCEEECCCC-cccCcCChH-------HhC
Confidence 89999999887766888888899999999996654 55333 345588899999999994 466553443 456
Q ss_pred cccccccccccccccceeccCCceeeCCccCEEEEecCCCccccc
Q 040774 956 FPKLMFLKLHRLQSLTTFCSANYTFKFPSLFYLSVRNCPKMKIFC 1000 (1035)
Q Consensus 956 l~sL~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~l~~~p 1000 (1035)
+++|+.|++++++--..+|.+.. +..+....+.|||.+.-.|
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~~---~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMGQ---FETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSSS---GGGSCGGGGCSCTEEESTT
T ss_pred CCCCCEEECcCCcccccCCCchh---hccCCHHHhcCCchhcCCC
Confidence 88999999999877667776543 5555556677888876544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-38 Score=391.60 Aligned_cols=615 Identities=14% Similarity=0.066 Sum_probs=417.3
Q ss_pred CCcceeeccCCCCCCCC---CChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCC-c-c--cccCCCC
Q 040774 235 PQLEFFYNFAPNNSPLQ---IPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLED-I-R--VIGELRK 307 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~~---i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-l-~--~i~~L~~ 307 (1035)
.+++.|++.+ ....+. +++. |.++++|++++++.+.+..+|+.|+++++||+|+|++|.+.. + . .++++++
T Consensus 50 ~~v~~L~L~~-~~l~g~~~~l~~~-l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSS-KPLNVGFSAVSSS-LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp TEEEEEECTT-SCCCEEHHHHHHH-TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred CcEEEEECCC-CCcCCccCccChh-HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 5789999987 444444 6655 578999999999999988888999999999999999999874 2 4 8999999
Q ss_pred CcEEecccCcCC-cchHhh-ccCCcCCEEcccCCccccccChhh---hcCCCCCcEEEccCCccceeeccccccccccCH
Q 040774 308 LEILSLQASAIE-QLPMEI-GQLTQLKLLDLSNCSKLKVIAPNV---LSNLSQLEELYMANCSIEWEVLGLSIERSNASL 382 (1035)
Q Consensus 308 L~~L~L~~~~l~-~lp~~i-~~L~~L~~L~l~~~~~l~~lp~~~---l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 382 (1035)
|++|++++|.+. ..|..+ .++++|++|++++|. +...++.. ++++++|++|++++|.+. +.
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~-- 193 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGNKIS-----------GD-- 193 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSSEEE-----------SC--
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCCccc-----------cc--
Confidence 999999999877 556555 889999999999998 77666654 789999999999999876 11
Q ss_pred HhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeeccc
Q 040774 383 VELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDE 462 (1035)
Q Consensus 383 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~ 462 (1035)
..+..+++|++|++++|......+. +..+++|++|++++
T Consensus 194 ~~~~~l~~L~~L~Ls~n~l~~~~~~-----------------------------------------l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 194 VDVSRCVNLEFLDVSSNNFSTGIPF-----------------------------------------LGDCSALQHLDISG 232 (768)
T ss_dssp CBCTTCTTCCEEECCSSCCCSCCCB-----------------------------------------CTTCCSCCEEECCS
T ss_pred CCcccCCcCCEEECcCCcCCCCCcc-----------------------------------------cccCCCCCEEECcC
Confidence 1237889999999998875432221 44557888999988
Q ss_pred ccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEEe
Q 040774 463 LPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVG 542 (1035)
Q Consensus 463 ~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~ 542 (1035)
+.........+ ..+++|++|++++|.-...+ ....+++|++|++.++.-...++... ...+++|++|++.
T Consensus 233 n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~------~~~~l~~L~~L~L~~n~l~~~ip~~~--~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 233 NKLSGDFSRAI--STCTELKLLNISSNQFVGPI------PPLPLKSLQYLSLAENKFTGEIPDFL--SGACDTLTGLDLS 302 (768)
T ss_dssp SCCCSCHHHHT--TTCSSCCEEECCSSCCEESC------CCCCCTTCCEEECCSSEEEESCCCCS--CTTCTTCSEEECC
T ss_pred CcCCCcccHHH--hcCCCCCEEECCCCcccCcc------CccccCCCCEEECcCCccCCccCHHH--HhhcCcCCEEECc
Confidence 76443333334 56899999999998732211 22278899999999865322332111 1235889999998
Q ss_pred ecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCccc
Q 040774 543 SCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSA 622 (1035)
Q Consensus 543 ~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~ 622 (1035)
+|.--..++. .+..+++|++|++++|..... +... ....+++|++|++++|.+........
T Consensus 303 ~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~---ip~~------------~l~~l~~L~~L~Ls~n~l~~~~p~~l-- 363 (768)
T 3rgz_A 303 GNHFYGAVPP--FFGSCSLLESLALSSNNFSGE---LPMD------------TLLKMRGLKVLDLSFNEFSGELPESL-- 363 (768)
T ss_dssp SSEEEECCCG--GGGGCTTCCEEECCSSEEEEE---CCHH------------HHTTCTTCCEEECCSSEEEECCCTTH--
T ss_pred CCcCCCccch--HHhcCCCccEEECCCCcccCc---CCHH------------HHhcCCCCCEEeCcCCccCccccHHH--
Confidence 8653323332 467889999999999875311 0000 01227889999999987653211111
Q ss_pred cccccCC-cccEEEEccCCCcccccChhHH-hhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCcc
Q 040774 623 AISCSVQ-NLTRLILEDCRKLKYVFSYSIA-KRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPEL 700 (1035)
Q Consensus 623 ~~p~~~~-~L~~L~l~~c~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 700 (1035)
. .++ +|+.|++++| .+....+..+. ..+++|++|++++|.....++ .....+++|+.|+++++.--
T Consensus 364 --~-~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--------~~l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 364 --T-NLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--------PTLSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp --H-HHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSEEEEECC--------GGGGGCTTCCEEECCSSEEE
T ss_pred --H-hhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCccccccC--------HHHhcCCCCCEEECcCCccc
Confidence 1 233 7999999988 44433232211 126789999999886432222 23456788999999886432
Q ss_pred cccccCCcccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccCCceeEecccccCcccc
Q 040774 701 RAFYPGVHTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDIAKI 780 (1035)
Q Consensus 701 ~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 780 (1035)
..++... ..+++|+.|++++|.....+|... ..+++|+.|++++|. ++..
T Consensus 432 ~~~p~~l--~~l~~L~~L~L~~n~l~~~~p~~~---------------------------~~l~~L~~L~L~~N~-l~~~ 481 (768)
T 3rgz_A 432 GTIPSSL--GSLSKLRDLKLWLNMLEGEIPQEL---------------------------MYVKTLETLILDFND-LTGE 481 (768)
T ss_dssp SCCCGGG--GGCTTCCEEECCSSCCCSCCCGGG---------------------------GGCTTCCEEECCSSC-CCSC
T ss_pred CcccHHH--hcCCCCCEEECCCCcccCcCCHHH---------------------------cCCCCceEEEecCCc-ccCc
Confidence 2333322 347889999998886443333211 347899999999776 4322
Q ss_pred ccCCCCcccCCCccEEEeecCCCcCCCchHHhhcCCceEEEEEeCccceecccCCccccccccccccccccccccccCce
Q 040774 781 WQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAYGSYKELFSNEGQVETHVGKLAQIRYLTLEHLNDLKH 860 (1035)
Q Consensus 781 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~ 860 (1035)
.+.. ...+++|+.|++++|.+....+..+..+++|+.|+++.|+++.. +|..++.+++|+.|++++++-...
T Consensus 482 ~p~~--l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~------~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 482 IPSG--LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGN------IPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEE------CCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCHH--HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCc------CCHHHcCCCCCCEEECCCCccCCc
Confidence 2222 25678999999966666644444567899999999997777643 345677889999999998864333
Q ss_pred eeeccCCCcccccccccceEEeec----------------------------------------------ccCccccCCC
Q 040774 861 LWLWEQNSKLNTVFQNLETLSAHF----------------------------------------------CLNLTNLMPS 894 (1035)
Q Consensus 861 L~i~~~~~~~~~~l~~L~~L~i~~----------------------------------------------C~~l~~l~~~ 894 (1035)
+ |..+.....+..+.+.. ..--...|..
T Consensus 554 --i----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 554 --I----PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp --C----CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred --C----ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 1 33332222222111111 0000123445
Q ss_pred cccccCccEEEeccCCCCcchhhhhhhhcccccceEeeccccccceeeccccccCCCCccccccccccccccccccceec
Q 040774 895 SASFRCLKELRVCACEHLMNLVASSAAKNLVQLVRMTVRECNKITELVVASEGDAANDEIIFPKLMFLKLHRLQSLTTFC 974 (1035)
Q Consensus 895 ~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~l~ 974 (1035)
++.+++|+.|+++++ +++..+ +..++++++|++|+++++ .++...|.. ...+++|+.|+++++.--..+|
T Consensus 628 ~~~l~~L~~LdLs~N-~l~g~i-p~~l~~l~~L~~L~Ls~N-~l~g~ip~~-------l~~L~~L~~LdLs~N~l~g~ip 697 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYN-MLSGYI-PKEIGSMPYLFILNLGHN-DISGSIPDE-------VGDLRGLNILDLSSNKLDGRIP 697 (768)
T ss_dssp CSSSBCCCEEECCSS-CCBSCC-CGGGGGCTTCCEEECCSS-CCCSCCCGG-------GGGCTTCCEEECCSSCCEECCC
T ss_pred hhccccccEEECcCC-cccccC-CHHHhccccCCEEeCcCC-ccCCCCChH-------HhCCCCCCEEECCCCcccCcCC
Confidence 667889999999665 455443 344688999999999994 566443544 4578999999999977666777
Q ss_pred cCCceeeCCccCEEEEecCCCcccccCCc
Q 040774 975 SANYTFKFPSLFYLSVRNCPKMKIFCGGV 1003 (1035)
Q Consensus 975 ~~~~~~~~~~L~~L~i~~C~~l~~~p~~~ 1003 (1035)
.... .+++|++|++++|+--..+|.++
T Consensus 698 ~~l~--~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 698 QAMS--ALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp GGGG--GCCCCSEEECCSSEEEEECCSSS
T ss_pred hHHh--CCCCCCEEECcCCcccccCCCch
Confidence 6655 88999999999997666777665
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-35 Score=363.16 Aligned_cols=596 Identities=17% Similarity=0.182 Sum_probs=323.4
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
+.++.+++.+..+|..+. +++++|++++ +....+++..|.++++|++|++++|.+..+ |..++++++||+|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNLTH--NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEECCS--SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC-CCCcEEECCC--CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 457777788888887664 7899999987 667778888889999999999999999877 677889999999999999
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcch-HhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeec
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQLP-MEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
.++.+ ..|+++++|++|++++|.++.+| ..++++++|++|++++|. +...++..++++++|++|++++|.+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 158 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQ---- 158 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCC----
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCccc----
Confidence 98877 36899999999999999988776 568999999999999987 66666666889999999999998876
Q ss_pred cccccccccCHHhhc--CCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccc
Q 040774 372 GLSIERSNASLVELK--NLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEW 449 (1035)
Q Consensus 372 ~~~~~~~~~~~~~l~--~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~ 449 (1035)
......+. .+++|++|++++|....++... +
T Consensus 159 -------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----------------------------------------~ 191 (680)
T 1ziw_A 159 -------ALKSEELDIFANSSLKKLELSSNQIKEFSPGC----------------------------------------F 191 (680)
T ss_dssp -------CBCHHHHGGGTTCEESEEECTTCCCCCBCTTG----------------------------------------G
T ss_pred -------ccCHHHhhccccccccEEECCCCcccccChhh----------------------------------------h
Confidence 33344443 4578999999888765554432 1
Q ss_pred cCccccceeecccccCccccccccC-ccccCCccEEEeecCCccceeccCCccccCcC--cccceeeccccccccccccc
Q 040774 450 RGMKNVEYLCLDELPGLTNVLHDLD-GEGFAELKHLNVQNNSNFLCIVDPLQVRCGAF--PMLESVVLQSLINLERICHG 526 (1035)
Q Consensus 450 ~~l~~L~~L~L~~~~~~~~~l~~l~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~ 526 (1035)
..+++|+.|++.++.........+. ....++|+.|+++++.- ..+. ......+ ++|+.|+++++. +..+..
T Consensus 192 ~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l-~~~~---~~~~~~l~~~~L~~L~Ls~n~-l~~~~~- 265 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL-STTS---NTTFLGLKWTNLTMLDLSYNN-LNVVGN- 265 (680)
T ss_dssp GGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC-CEEC---TTTTGGGGGSCCCEEECTTSC-CCEECT-
T ss_pred hhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc-cccC---hhHhhccCcCCCCEEECCCCC-cCccCc-
Confidence 2223333333333221100000000 00124455555555431 1110 0011122 225555555432 222111
Q ss_pred ccccCCCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccch-hhhhccccccccCccccccccccCCccee
Q 040774 527 QLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHN-EIILENENHLYTPLSLFNEKLVLPKLEVL 605 (1035)
Q Consensus 527 ~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~-~~~l~~l~~~~~~~~~~~~~~~~~~L~~L 605 (1035)
.....+++|++|++.++. +..+++. .+..+++|+.|++.++...... ...++.+.. .....+++|+.|
T Consensus 266 -~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~--------~~~~~l~~L~~L 334 (680)
T 1ziw_A 266 -DSFAWLPQLEYFFLEYNN-IQHLFSH-SLHGLFNVRYLNLKRSFTKQSISLASLPKIDD--------FSFQWLKCLEHL 334 (680)
T ss_dssp -TTTTTCTTCCEEECCSCC-BSEECTT-TTTTCTTCCEEECTTCBCCC------CCEECT--------TTTTTCTTCCEE
T ss_pred -ccccCcccccEeeCCCCc-cCccChh-hhcCCCCccEEeccchhhhcccccccccccCh--------hhcccCCCCCEE
Confidence 112345555555555532 2222221 2345566666666554321000 000111100 011225666666
Q ss_pred eccccccccccccCccccccccCCcccEEEEccCCC-cccccChhHHhh--cCCCcEEEEeccccccccccccccccCCC
Q 040774 606 ELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRK-LKYVFSYSIAKR--LGQLQHLEICRCPHLEEVVGKESGVEADP 682 (1035)
Q Consensus 606 ~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~-l~~l~~~~~~~~--l~~L~~L~i~~c~~l~~l~~~~~~~~~~~ 682 (1035)
++++|.+..+....+. .+++|+.|++++|.. +..++...+ .. .++|+.|++++|. +..+. +..
T Consensus 335 ~l~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~~~~~~l~~~~f-~~~~~~~L~~L~L~~n~-l~~~~-------~~~ 400 (680)
T 1ziw_A 335 NMEDNDIPGIKSNMFT-----GLINLKYLSLSNSFTSLRTLTNETF-VSLAHSPLHILNLTKNK-ISKIE-------SDA 400 (680)
T ss_dssp ECCSCCBCCCCTTTTT-----TCTTCCEEECTTCBSCCCEECTTTT-GGGTTSCCCEEECTTSC-CCEEC-------TTT
T ss_pred ECCCCccCCCChhHhc-----cccCCcEEECCCCchhhhhcchhhh-cccccCcCceEECCCCC-CCeEC-------hhh
Confidence 6666655554333221 455667777766631 222222111 11 2466677766664 22211 112
Q ss_pred ceeccccCeeecccCCcccccccCCcccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccc
Q 040774 683 SFVFPRLTILKLHYLPELRAFYPGVHTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKV 762 (1035)
Q Consensus 683 ~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 762 (1035)
...+++|+.|+++++.--..++. .....+++|++|++++|... .++.. .+ ..
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~-~~~~~----------------------~~----~~ 452 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNKYL-QLTRN----------------------SF----AL 452 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCSEE-ECCTT----------------------TT----TT
T ss_pred hhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCCcc-eeChh----------------------hh----hc
Confidence 23456666666666532222221 12233667777777776522 11100 00 23
Q ss_pred cCCceeEecccccCccccccCCCCcccCCCccEEEeecCCCcCCCchHHhhcCCceEEEEEeCccceecccCC--ccccc
Q 040774 763 LPSLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAYGSYKELFSNEG--QVETH 840 (1035)
Q Consensus 763 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~c~~l~~l~~~~~--~~~~~ 840 (1035)
+++|+.|++++|. +..+.........+++|+.|++++|.+..++...+.++++|++|+++.|.++.++...- .....
T Consensus 453 ~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~ 531 (680)
T 1ziw_A 453 VPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531 (680)
T ss_dssp CTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred Ccccccchhcccc-ccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence 6777777777554 22111111223456777777777777777777777777888888888777766532110 00011
Q ss_pred cccccccccccccccccCceeeeccCCCcccccccccceEEeecccCccccCCC-cccccCccEEEeccCCCCcchhhhh
Q 040774 841 VGKLAQIRYLTLEHLNDLKHLWLWEQNSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLKELRVCACEHLMNLVASS 919 (1035)
Q Consensus 841 ~~~l~~L~~L~l~~c~~L~~L~i~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~l~~~~ 919 (1035)
+..+++|+.|+++++. ++. + .+..+..+++|+.|+++++ +++.+|+. +..+++|+.|+++++ +++.+.+..
T Consensus 532 ~~~l~~L~~L~L~~N~-l~~--i---~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 603 (680)
T 1ziw_A 532 LKGLSHLHILNLESNG-FDE--I---PVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKV 603 (680)
T ss_dssp TTTCTTCCEEECCSSC-CCC--C---CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHH
T ss_pred hcCCCCCCEEECCCCC-CCC--C---CHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC-cCCccChhH
Confidence 3345555555555542 222 1 1223444555555555433 33344333 234455555555443 344432221
Q ss_pred hhhcccccceEeecc
Q 040774 920 AAKNLVQLVRMTVRE 934 (1035)
Q Consensus 920 ~~~~l~~L~~L~i~~ 934 (1035)
+...+++|++|++++
T Consensus 604 ~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 604 FGPAFRNLTELDMRF 618 (680)
T ss_dssp HHHHHTTCSEEECTT
T ss_pred hcccccccCEEEccC
Confidence 111445555555554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.2e-36 Score=363.93 Aligned_cols=596 Identities=18% Similarity=0.151 Sum_probs=348.0
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+.+++++ ....++|..+ .+++++|++++|.+..+|. .|+++++|++|++++|.++.+ ..++++++|++|+++
T Consensus 7 ~~~~cs~--~~L~~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 7 EVADCSH--LKLTQVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SEEECCS--SCCSSCCSCS---CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECC
T ss_pred CeeECCC--CCcccccccc---CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECC
Confidence 4556665 6677888765 3799999999999998865 699999999999999999876 678999999999999
Q ss_pred cCcCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 315 ASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
+|.++.+|. .++++++|++|++++|. +..+++..++++++|++|++++|.+. ...+..++++++|++
T Consensus 82 ~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~-----------~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLS-----------STKLGTQVQLENLQE 149 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCS-----------CCCCCSSSCCTTCCE
T ss_pred CCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCccc-----------ccCchhhcccccCCE
Confidence 999999987 49999999999999997 88888777999999999999999886 344556788999999
Q ss_pred EEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeecccccCcccccccc
Q 040774 394 LEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVLHDL 473 (1035)
Q Consensus 394 L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l~~l 473 (1035)
|++++|....++.... .....++|+.|+++++.- ....+.
T Consensus 150 L~L~~n~l~~~~~~~~--------------------------------------~~~~~~~L~~L~L~~n~l-~~~~~~- 189 (680)
T 1ziw_A 150 LLLSNNKIQALKSEEL--------------------------------------DIFANSSLKKLELSSNQI-KEFSPG- 189 (680)
T ss_dssp EECCSSCCCCBCHHHH--------------------------------------GGGTTCEESEEECTTCCC-CCBCTT-
T ss_pred EEccCCcccccCHHHh--------------------------------------hccccccccEEECCCCcc-cccChh-
Confidence 9999887654433210 012235788888877542 222221
Q ss_pred CccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEEeecCCCcccCCh
Q 040774 474 DGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSF 553 (1035)
Q Consensus 474 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 553 (1035)
....+++|+.|.+.++.-......... .....++|+.|.+.++. +.......+..-..++|+.|+++++. +..++..
T Consensus 190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~-~~l~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~ 266 (680)
T 1ziw_A 190 CFHAIGRLFGLFLNNVQLGPSLTEKLC-LELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGND 266 (680)
T ss_dssp GGGGSSEECEEECTTCCCHHHHHHHHH-HHHTTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTTSC-CCEECTT
T ss_pred hhhhhhhhhhhhccccccChhhHHHHH-HHhhhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCCCC-cCccCcc
Confidence 114567788888776651110000000 01123677888877753 22221111111112347788877753 3443322
Q ss_pred hhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccc-cccccCcc----ccccccC
Q 040774 554 SIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVA-KIWHNQLS----AAISCSV 628 (1035)
Q Consensus 554 ~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~~~----~~~p~~~ 628 (1035)
.+..+++|++|++++|...... ... ...+++|+.|+++++... .+...... ..+ ..+
T Consensus 267 -~~~~l~~L~~L~L~~n~l~~~~---~~~-------------~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~-~~l 328 (680)
T 1ziw_A 267 -SFAWLPQLEYFFLEYNNIQHLF---SHS-------------LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF-QWL 328 (680)
T ss_dssp -TTTTCTTCCEEECCSCCBSEEC---TTT-------------TTTCTTCCEEECTTCBCCC------CCEECTTTT-TTC
T ss_pred -cccCcccccEeeCCCCccCccC---hhh-------------hcCCCCccEEeccchhhhcccccccccccChhhc-ccC
Confidence 3456777888888777642110 011 122667777777765211 00000000 001 145
Q ss_pred CcccEEEEccCCCcccccChhHHhhcCCCcEEEEecccc-ccccccccccccCCCceeccccCeeecccCCcccccccCC
Q 040774 629 QNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPH-LEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYPGV 707 (1035)
Q Consensus 629 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~-l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~ 707 (1035)
++|+.|++++| .+..+++. .+..+++|++|++++|.. +..+... .......++|+.|+++++ +++.+....
T Consensus 329 ~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~l~~~-----~f~~~~~~~L~~L~L~~n-~l~~~~~~~ 400 (680)
T 1ziw_A 329 KCLEHLNMEDN-DIPGIKSN-MFTGLINLKYLSLSNSFTSLRTLTNE-----TFVSLAHSPLHILNLTKN-KISKIESDA 400 (680)
T ss_dssp TTCCEEECCSC-CBCCCCTT-TTTTCTTCCEEECTTCBSCCCEECTT-----TTGGGTTSCCCEEECTTS-CCCEECTTT
T ss_pred CCCCEEECCCC-ccCCCChh-HhccccCCcEEECCCCchhhhhcchh-----hhcccccCcCceEECCCC-CCCeEChhh
Confidence 67777777777 45554443 246677777777777642 1111110 000011246777777765 344433322
Q ss_pred cccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccCCceeEecccccCccccccCCCCc
Q 040774 708 HTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFPD 787 (1035)
Q Consensus 708 ~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 787 (1035)
...+++|+.|++++|.....+|... ...+++|++|++++|. +..+....+
T Consensus 401 -~~~l~~L~~L~L~~N~l~~~~~~~~--------------------------~~~l~~L~~L~Ls~n~-l~~~~~~~~-- 450 (680)
T 1ziw_A 401 -FSWLGHLEVLDLGLNEIGQELTGQE--------------------------WRGLENIFEIYLSYNK-YLQLTRNSF-- 450 (680)
T ss_dssp -TTTCTTCCEEECCSSCCEEECCSGG--------------------------GTTCTTCCEEECCSCS-EEECCTTTT--
T ss_pred -hhCCCCCCEEeCCCCcCccccCccc--------------------------ccCcccccEEecCCCC-cceeChhhh--
Confidence 2236677777777665332221100 0336677777777554 444433333
Q ss_pred ccCCCccEEEeecCCCc--CCCchHHhhcCCceEEEEEeCccceecccCCccccccccccccccccccccccCceeeecc
Q 040774 788 YLSNKLKVLAIENDESE--VLPPDLLERFHNLVNLELAYGSYKELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWE 865 (1035)
Q Consensus 788 ~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i~~ 865 (1035)
..+++|+.|++.+|... ...+..+.++++|+.|+++.|+++.+++ ..+..+++|++|+++++. ++. ++.
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~Ls~N~-l~~--~~~ 521 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND------DMLEGLEKLEILDLQHNN-LAR--LWK 521 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSC-CGG--GGS
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCCh------hhhccccccCEEeCCCCC-ccc--cch
Confidence 35667777777444432 1122334666777777777666665432 223456667777776653 333 211
Q ss_pred C-----CCcccccccccceEEeecccCccccCCC-cccccCccEEEeccCCCCcchhhhhhhhcccccceEeeccccccc
Q 040774 866 Q-----NSKLNTVFQNLETLSAHFCLNLTNLMPS-SASFRCLKELRVCACEHLMNLVASSAAKNLVQLVRMTVRECNKIT 939 (1035)
Q Consensus 866 ~-----~~~~~~~l~~L~~L~i~~C~~l~~l~~~-~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~ 939 (1035)
. ....+..+++|+.|+++++ .++.+|.. +..+++|+.|++ +.++++.+ ++..+.++++|++|+++++ .++
T Consensus 522 ~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L-s~N~l~~l-~~~~~~~l~~L~~L~L~~N-~l~ 597 (680)
T 1ziw_A 522 HANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDL-GLNNLNTL-PASVFNNQVSLKSLNLQKN-LIT 597 (680)
T ss_dssp TTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC-CSSCCCCC-CTTTTTTCTTCCEEECTTS-CCC
T ss_pred hhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeEC-CCCCCCcC-CHhHhCCCCCCCEEECCCC-cCC
Confidence 1 0112455666666666665 34455442 455666666666 33455554 2334456666666666663 455
Q ss_pred eeeccccccCCCCcc-ccccccccccccccc
Q 040774 940 ELVVASEGDAANDEI-IFPKLMFLKLHRLQS 969 (1035)
Q Consensus 940 ~l~~~~~~~~~~~~~-~l~sL~~L~l~~c~~ 969 (1035)
.+.+.. .. .+++|+.|+++++|-
T Consensus 598 ~~~~~~-------~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 598 SVEKKV-------FGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp BCCHHH-------HHHHHTTCSEEECTTCCC
T ss_pred ccChhH-------hcccccccCEEEccCCCc
Confidence 552111 11 355666666666543
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.6e-35 Score=350.47 Aligned_cols=178 Identities=19% Similarity=0.247 Sum_probs=142.3
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
+.++.+++.+..+|..+. +++++|++++ +....+++..|.++++|++|++++|.+..+ |..|+++++||+|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSF--NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCC--CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence 467888888888887665 7899999997 667778877789999999999999999887 668899999999999999
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcch-HhhccCCcCCEEcccCCcccc--ccChhhhcCCCCCcEEEccCCcccee
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQLP-MEIGQLTQLKLLDLSNCSKLK--VIAPNVLSNLSQLEELYMANCSIEWE 369 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~l~~L~~L~~L~l~~~~~~~~ 369 (1035)
.++.+ ..|+++++|++|++++|.++.+| ..++++++|++|++++|. +. .+|.. ++++++|++|++++|.+...
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHh-HhhcCCCCEEEccCCcceec
Confidence 98866 67999999999999999998776 568999999999999987 55 45665 89999999999999987621
Q ss_pred eccccccccccCHHhhcCCCC-CCEEEEeecCCCCCCC
Q 040774 370 VLGLSIERSNASLVELKNLSR-LTTLEINILDAGILPS 406 (1035)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~~~~ 406 (1035)
....+..+.+++. +.+|++++|....++.
T Consensus 169 --------~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 169 --------TVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp --------CTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred --------ChhhhhhhhccccccceeeccCCCcceeCc
Confidence 1123444555544 5578888877655544
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3e-34 Score=345.76 Aligned_cols=175 Identities=19% Similarity=0.182 Sum_probs=142.9
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
++++..+..+..+|..+. .++++|++++ +....+++..|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 15 ~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP-NSTECLEFSF--NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTT--CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcccCcCCCC-CcCcEEEccC--CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 466777777888887664 4789999997 667778777789999999999999999876 778999999999999999
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeec
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
.++.+ ..++++++|++|++++|.++.+ |..++++++|++|++++|. +..++...+..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~---- 166 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIH---- 166 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCC----
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCccc----
Confidence 98865 6799999999999999999987 5668999999999999997 77664322566999999999999887
Q ss_pred cccccccccCHHhhcCCCCCC--EEEEeecCCCCCC
Q 040774 372 GLSIERSNASLVELKNLSRLT--TLEINILDAGILP 405 (1035)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~--~L~l~~~~~~~~~ 405 (1035)
...+..++.+++|+ .|++++|....++
T Consensus 167 -------~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 167 -------YLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp -------EECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred -------ccChhhhhhhcccceeEEecCCCccCccC
Confidence 45567788888888 7777777654433
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7e-34 Score=342.49 Aligned_cols=152 Identities=23% Similarity=0.283 Sum_probs=131.3
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+++++.+ .....+|..+ .++|++|++++|.++.++. .|.++++||+|++++|.++.+ ..|+++++|++|+++
T Consensus 14 ~~~~c~~--~~l~~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 14 ITYQCMD--QKLSKVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TEEECTT--SCCSSCCTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEccC--CCcccCCCCC---CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 4666665 6788899865 3899999999999998854 899999999999999999876 679999999999999
Q ss_pred cCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 315 ASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
+|.++.+ |..++++++|++|++++|. +..+++..++++++|++|++++|.+. ....+..++++++|++
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~----------~~~lp~~~~~l~~L~~ 157 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIH----------SCKLPAYFSNLTNLVH 157 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCC----------CCCCCGGGGTCTTCCE
T ss_pred CCcccccChhhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCccc----------ceechHhHhhcCCCCE
Confidence 9999977 7889999999999999998 88888666999999999999999886 1134678999999999
Q ss_pred EEEeecCCCCCC
Q 040774 394 LEINILDAGILP 405 (1035)
Q Consensus 394 L~l~~~~~~~~~ 405 (1035)
|++++|....++
T Consensus 158 L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 158 VDLSYNYIQTIT 169 (606)
T ss_dssp EECCSSCCCEEC
T ss_pred EEccCCcceecC
Confidence 999998765443
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-32 Score=329.37 Aligned_cols=533 Identities=17% Similarity=0.175 Sum_probs=297.9
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
++++..+ .....+|..+ ..++++|++++|.++.+ |..|+++++||+|++++|.+..+ ..|+++++|++|+++
T Consensus 15 ~~~~c~~--~~l~~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCEN--LGLNEIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTT--SCCSSCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ceEECCC--CCcccCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCC
Confidence 3555554 5677888765 35789999999999988 67899999999999999998865 679999999999999
Q ss_pred cCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 315 ASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
+|.+..+ |..++++++|++|++++|. ++.+++..++++++|++|++++|.+. ...+..+..+++|++
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~l~~L~~ 157 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPLHNQKTLESLYLGSNHIS-----------SIKLPKGFPTEKLKV 157 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEEECCSSCCC-----------CCCCCTTCCCTTCCE
T ss_pred CCcccccChhhhcccccccEeeccccC-cccCCcchhccCCcccEEECCCCccc-----------ccCcccccCCcccCE
Confidence 9999866 6779999999999999998 88876555899999999999999886 223344555889999
Q ss_pred EEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccc--eeecccccCcccccc
Q 040774 394 LEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVE--YLCLDELPGLTNVLH 471 (1035)
Q Consensus 394 L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~--~L~L~~~~~~~~~l~ 471 (1035)
|++++|....++... +.++++|+ .|+++++... ...+
T Consensus 158 L~L~~n~l~~~~~~~----------------------------------------~~~l~~L~~l~L~l~~n~l~-~~~~ 196 (606)
T 3t6q_A 158 LDFQNNAIHYLSKED----------------------------------------MSSLQQATNLSLNLNGNDIA-GIEP 196 (606)
T ss_dssp EECCSSCCCEECHHH----------------------------------------HHTTTTCCSEEEECTTCCCC-EECT
T ss_pred EEcccCcccccChhh----------------------------------------hhhhcccceeEEecCCCccC-ccCh
Confidence 999888754333211 23334444 4555543322 2222
Q ss_pred ccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEEeecCCCcccC
Q 040774 472 DLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLF 551 (1035)
Q Consensus 472 ~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~ 551 (1035)
.. ....+|+.|++.++..+... +..+..+ .++.+.+..+..+....
T Consensus 197 ~~--~~~~~L~~L~l~~~~~~~~~----------~~~l~~~----------------------~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 197 GA--FDSAVFQSLNFGGTQNLLVI----------FKGLKNS----------------------TIQSLWLGTFEDMDDED 242 (606)
T ss_dssp TT--TTTCEEEEEECTTCSCHHHH----------HHHTTTC----------------------EEEEEECCCCTTSCCCC
T ss_pred hH--hhhccccccccCCchhHHHH----------hhhcccc----------------------chhheechhhccccccc
Confidence 21 12345556665555422110 0111111 11122222221111100
Q ss_pred -ChhhhhcCC--CCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCccccccccC
Q 040774 552 -SFSIAKFLP--NLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAISCSV 628 (1035)
Q Consensus 552 -~~~~~~~l~--~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~ 628 (1035)
....+..+. +|++|++++|....... .....+++|++|++++|.+..++.... .+
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~----------------~~~~~l~~L~~L~l~~n~l~~lp~~l~------~l 300 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISS----------------NTFHCFSGLQELDLTATHLSELPSGLV------GL 300 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCT----------------TTTTTCTTCSEEECTTSCCSCCCSSCC------SC
T ss_pred cChhHhchhhcCceeEEEeecCccCccCH----------------HHhccccCCCEEeccCCccCCCChhhc------cc
Confidence 011122222 56777777765421100 011226778888888887765543221 46
Q ss_pred CcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCccccccc-CC
Q 040774 629 QNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYP-GV 707 (1035)
Q Consensus 629 ~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~-~~ 707 (1035)
++|+.|++++| .++.+++. .+..+++|++|++++|.....++. .....+++|+.|+++++. ++.... ..
T Consensus 301 ~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 370 (606)
T 3t6q_A 301 STLKKLVLSAN-KFENLCQI-SASNFPSLTHLSIKGNTKRLELGT-------GCLENLENLRELDLSHDD-IETSDCCNL 370 (606)
T ss_dssp TTCCEEECTTC-CCSBGGGG-CGGGCTTCSEEECCSCSSCCBCCS-------STTTTCTTCCEEECCSSC-CCEEEESTT
T ss_pred ccCCEEECccC-CcCcCchh-hhhccCcCCEEECCCCCcccccch-------hhhhccCcCCEEECCCCc-cccccCcch
Confidence 67888888887 45555443 246778888888877753322221 123346677777777753 333320 11
Q ss_pred cccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccCCceeEecccccCccccccCCCCc
Q 040774 708 HTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLPSLEELRLSKNRDIAKIWQGPFPD 787 (1035)
Q Consensus 708 ~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 787 (1035)
....+++|++|++++|......|.. + ..+++|+.|++++|. ++...... ..
T Consensus 371 ~~~~l~~L~~L~l~~n~l~~~~~~~-----------------------~----~~l~~L~~L~l~~n~-l~~~~~~~-~~ 421 (606)
T 3t6q_A 371 QLRNLSHLQSLNLSYNEPLSLKTEA-----------------------F----KECPQLELLDLAFTR-LKVKDAQS-PF 421 (606)
T ss_dssp TTTTCTTCCEEECCSCSCEEECTTT-----------------------T----TTCTTCSEEECTTCC-EECCTTCC-TT
T ss_pred hcccCCCCCEEECCCCcCCcCCHHH-----------------------h----cCCccCCeEECCCCc-CCCcccch-hh
Confidence 2233566777777666422111100 0 235666777776554 22221110 11
Q ss_pred ccCCCccEEEeecCCCcCCCchHHhhcCCceEEEEEeCcccee-cccCCccccccccccccccccccccccCceeeeccC
Q 040774 788 YLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAYGSYKEL-FSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWEQ 866 (1035)
Q Consensus 788 ~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~c~~l~~l-~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i~~~ 866 (1035)
..+++|+.|++++|.+...+...+.++++|++|+++.|.++.. ++. +..+..+++|+.|++++|. ++. .
T Consensus 422 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~~l~~L~~L~Ls~n~-l~~-----~ 491 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK----TNSLQTLGRLEILVLSFCD-LSS-----I 491 (606)
T ss_dssp TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS----SCGGGGCTTCCEEECTTSC-CCE-----E
T ss_pred hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc----chhhccCCCccEEECCCCc-cCc-----c
Confidence 3456666666655555555555555666666666665555431 000 1223445555555555552 222 1
Q ss_pred CCcccccccccceEEeecccCccccCCCcccccCccEEEeccCCCCcchhhhhhhhcccccceEeecccc
Q 040774 867 NSKLNTVFQNLETLSAHFCLNLTNLMPSSASFRCLKELRVCACEHLMNLVASSAAKNLVQLVRMTVRECN 936 (1035)
Q Consensus 867 ~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~ 936 (1035)
.+..+..+++|++|++++|.--...|..+..+++| .|+++++ +++.++ +..+..+++|++|++++++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIIL-PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCC-GGGHHHHHTSSEEECTTCC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccC-HhhcccCCCCCEEeCCCCC
Confidence 23344555555555555554333334444445555 5555443 233332 2333445555555555543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1e-30 Score=324.99 Aligned_cols=168 Identities=19% Similarity=0.186 Sum_probs=119.7
Q ss_pred EEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCc-CccC-cccccCCCCCcEEEcCCC
Q 040774 217 RISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMR-LLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 217 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~-i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
.++.+++++..+|. -.+++++|++++ +....+++..|.++++|++|++++|. +..+ |.+|+++++||+|+|++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs~--N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLSF--NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEES--CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECCC--CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45556667777776 457788888886 55666666667888888888888884 3455 677888888888888888
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCc-chHh--hccCCcCCEEcccCCccccccC-hhhhcCCCCCcEEEccCCccce
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQ-LPME--IGQLTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMANCSIEW 368 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~lp-~~~l~~L~~L~~L~l~~~~~~~ 368 (1035)
.+..+ ..|+++++|++|++++|.+.. +|.. ++++++|++|++++|. +..++ ...++++++|++|++++|.+.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~- 161 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIF- 161 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCC-
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCC-
Confidence 87754 678888888888888887774 4554 7788888888888887 54443 234788888888888888765
Q ss_pred eeccccccccccCHHhhcCC--CCCCEEEEeecC
Q 040774 369 EVLGLSIERSNASLVELKNL--SRLTTLEINILD 400 (1035)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L--~~L~~L~l~~~~ 400 (1035)
......+..+ ++|+.|+++.|.
T Consensus 162 ----------~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 162 ----------LVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp ----------CCCSGGGHHHHHCSSCCCEECCSB
T ss_pred ----------eeCHHHcccccCCccceEECCCCc
Confidence 2333444444 677777777665
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=1.1e-30 Score=324.68 Aligned_cols=390 Identities=19% Similarity=0.190 Sum_probs=254.4
Q ss_pred CCccEEEecCCCCCCCC-CCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIP-QGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~-~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L 289 (1035)
..++++++++|.+..+. ..+ .+++|++|++++ +.....+++..|.++++|++|+|++|.+..+ |..|+++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~-n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGS-QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECT-TCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCC-CCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 78999999999998764 333 899999999998 5577888888899999999999999999987 8899999999999
Q ss_pred EcCCCCCCC--cc--cccCCCCCcEEecccCcCCcc--hHhhccCCcCCEEcccCCccccccChhhhcCC--CCCcEEEc
Q 040774 290 CLDSCQLED--IR--VIGELRKLEILSLQASAIEQL--PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNL--SQLEELYM 361 (1035)
Q Consensus 290 ~L~~~~l~~--l~--~i~~L~~L~~L~L~~~~l~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L--~~L~~L~l 361 (1035)
+|++|.++. +. .++++++|++|++++|.+..+ +..++++++|++|++++|. +..+.+..++.+ ++|++|++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHHCSSCCCEE
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccCCccceEEC
Confidence 999999885 33 399999999999999999865 3579999999999999998 666555557777 89999999
Q ss_pred cCCccceeeccccccccccCHHhhcCCC------CCCEEEEeecCCC-CCCCcc----ccccccEEEEEEccccccCCcc
Q 040774 362 ANCSIEWEVLGLSIERSNASLVELKNLS------RLTTLEINILDAG-ILPSGF----FSRKLERYRIVVGDTWDRFDKY 430 (1035)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~------~L~~L~l~~~~~~-~~~~~~----~~~~L~~l~~~~~~~~~~~~~~ 430 (1035)
++|.+. ...+..++.+. .|+.|++++|... ..+..+ ...++..+.+.......... .
T Consensus 182 ~~n~l~-----------~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~-~ 249 (844)
T 3j0a_A 182 AANSLY-----------SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG-F 249 (844)
T ss_dssp CCSBSC-----------CCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS-C
T ss_pred CCCccc-----------cccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc-c
Confidence 999886 22223333333 4999999988633 233322 22334444332100000000 0
Q ss_pred cccchhhhccCCceeeccccCc--cccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcc
Q 040774 431 KTRRTLKLKLNSRICLGEWRGM--KNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPM 508 (1035)
Q Consensus 431 ~~~~~l~l~~~~~i~~~~~~~l--~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 508 (1035)
... ..+....+.++ ++|+.|+++++.........+ ..+++|+.|+++++. +..+ .......+++
T Consensus 250 ~~l--------~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n~-i~~~---~~~~~~~l~~ 315 (844)
T 3j0a_A 250 HNI--------KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYNK-INKI---ADEAFYGLDN 315 (844)
T ss_dssp SSS--------TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESCC-CCEE---CTTTTTTCSS
T ss_pred ccc--------CCCChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCCc-CCCC---ChHHhcCCCC
Confidence 000 00001112333 567777777654322211222 457778888887776 2222 1124456677
Q ss_pred cceeecccccccccccccccccCCCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhcccccccc
Q 040774 509 LESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYT 588 (1035)
Q Consensus 509 L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~ 588 (1035)
|++|+++++. +..+.. .....+++|+.|+++++ .+..++.. .+..+++|++|++++|.... +
T Consensus 316 L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~--------i----- 377 (844)
T 3j0a_A 316 LQVLNLSYNL-LGELYS--SNFYGLPKVAYIDLQKN-HIAIIQDQ-TFKFLEKLQTLDLRDNALTT--------I----- 377 (844)
T ss_dssp CCEEEEESCC-CSCCCS--CSCSSCTTCCEEECCSC-CCCCCCSS-CSCSCCCCCEEEEETCCSCC--------C-----
T ss_pred CCEEECCCCC-CCccCH--HHhcCCCCCCEEECCCC-CCCccChh-hhcCCCCCCEEECCCCCCCc--------c-----
Confidence 7777777643 332211 12345677777777765 34444332 24556777777777776321 1
Q ss_pred CccccccccccCCcceeeccccccccccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccc
Q 040774 589 PLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCP 666 (1035)
Q Consensus 589 ~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 666 (1035)
..+++|+.|++++|.+..++ ....+++.|+++++ .++.+....++..+++|+.|++++|.
T Consensus 378 --------~~~~~L~~L~l~~N~l~~l~---------~~~~~l~~L~ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 378 --------HFIPSIPDIFLSGNKLVTLP---------KINLTANLIHLSEN-RLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp --------SSCCSCSEEEEESCCCCCCC---------CCCTTCCEEECCSC-CCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred --------cCCCCcchhccCCCCccccc---------ccccccceeecccC-ccccCchhhhhhcCCccceeeCCCCc
Confidence 11567777777777665442 23345777777776 55555444445567777777777764
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=4.9e-31 Score=313.76 Aligned_cols=487 Identities=18% Similarity=0.195 Sum_probs=278.8
Q ss_pred EEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCC
Q 040774 218 ISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQL 296 (1035)
Q Consensus 218 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l 296 (1035)
.+.+++.+.++|..+. ++|++|++++ +....+++..|.++++|++|++++|.+..++ ..|+++++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSF--NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCS--SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCC-CCccEEECcC--CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 4556667777776554 6788888887 4556666666788888888888888888764 6788888888888888887
Q ss_pred CCc--ccccCCCCCcEEecccCcCCc--chHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 297 EDI--RVIGELRKLEILSLQASAIEQ--LPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 297 ~~l--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+.+ ..++++++|++|++++|.++. .|..++++++|++|++++|..++.+|+..++++++|++|++++|.+.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~----- 161 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR----- 161 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-----
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc-----
Confidence 766 348888888888888888774 45667888888888888887677777655788888888888888776
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCc
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGM 452 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l 452 (1035)
...+..++.+++|++|+++++....++... +..+
T Consensus 162 ------~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~----------------------------------------~~~l 195 (549)
T 2z81_A 162 ------NYQSQSLKSIRDIHHLTLHLSESAFLLEIF----------------------------------------ADIL 195 (549)
T ss_dssp ------EECTTTTTTCSEEEEEEEECSBSTTHHHHH----------------------------------------HHST
T ss_pred ------ccChhhhhccccCceEecccCcccccchhh----------------------------------------Hhhc
Confidence 345566777888888888777654444332 1122
Q ss_pred cccceeecccccCccccc-cccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccc--cccc-ccc
Q 040774 453 KNVEYLCLDELPGLTNVL-HDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLE--RICH-GQL 528 (1035)
Q Consensus 453 ~~L~~L~L~~~~~~~~~l-~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~--~~~~-~~~ 528 (1035)
++|+.|+++++....... +......+++|+.|++.++.-..............+++|+.+.+.+|..-. .+.. ...
T Consensus 196 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 275 (549)
T 2z81_A 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD 275 (549)
T ss_dssp TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTT
T ss_pred ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchh
Confidence 344444444432211100 000012345566666665531100000000022344556666655543111 0000 001
Q ss_pred ccCCCCCcceEEEeecCCCcccC---ChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCccee
Q 040774 529 RAESFCNLKTIKVGSCHKLKNLF---SFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVL 605 (1035)
Q Consensus 529 ~~~~l~~L~~L~l~~c~~L~~l~---~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L 605 (1035)
....+++|+.|.+.++.--.... ........++|++|++++|...... ..+ ...+++|++|
T Consensus 276 ~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip----~~~------------~~~l~~L~~L 339 (549)
T 2z81_A 276 VVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP----CSF------------SQHLKSLEFL 339 (549)
T ss_dssp CCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC----HHH------------HHHCTTCCEE
T ss_pred hhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC----HHH------------HhcCccccEE
Confidence 12345667777766643211000 0011234567777777776542110 000 0125677777
Q ss_pred eccccccccccccCccccccccCCcccEEEEccCCCcccccC-hhHHhhcCCCcEEEEeccccccccccccccccCCCce
Q 040774 606 ELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFS-YSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSF 684 (1035)
Q Consensus 606 ~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~-~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~ 684 (1035)
++++|.+........ ..-..+++|+.|++++| .++.+++ ...+..+++|++|++++|. +..++. ...
T Consensus 340 ~Ls~N~l~~~~~~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~--------~~~ 407 (549)
T 2z81_A 340 DLSENLMVEEYLKNS--ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPD--------SCQ 407 (549)
T ss_dssp ECCSSCCCHHHHHHH--TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCS--------CCC
T ss_pred EccCCccccccccch--hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCCh--------hhc
Confidence 777776554321000 00014667888888877 5655442 1335677778888887773 433332 223
Q ss_pred eccccCeeecccCCcccccccCCcccCCCCcceeeeecCCcccccccccccccccccCCccccCCCCCCCCccccccccC
Q 040774 685 VFPRLTILKLHYLPELRAFYPGVHTLECPMLTKLEVYICDKLESFTSELYSLHENNEEGQLIDVPVPAPRPLFLVEKVLP 764 (1035)
Q Consensus 685 ~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l~~lp~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 764 (1035)
.+++|+.|+++++. ++.++... .++|++|++++|. +..++ ..++
T Consensus 408 ~~~~L~~L~Ls~N~-l~~l~~~~----~~~L~~L~Ls~N~-l~~~~------------------------------~~l~ 451 (549)
T 2z81_A 408 WPEKMRFLNLSSTG-IRVVKTCI----PQTLEVLDVSNNN-LDSFS------------------------------LFLP 451 (549)
T ss_dssp CCTTCCEEECTTSC-CSCCCTTS----CTTCSEEECCSSC-CSCCC------------------------------CCCT
T ss_pred ccccccEEECCCCC-cccccchh----cCCceEEECCCCC-hhhhc------------------------------ccCC
Confidence 45677777777753 44443321 3567777776663 32221 2356
Q ss_pred CceeEecccccCccccccCCCCcccCCCccEEEeecCCCcCCCchHHhhcCCceEEEEEeCcc
Q 040774 765 SLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAYGSY 827 (1035)
Q Consensus 765 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~c~~l 827 (1035)
+|++|++++| .++.++.. ..+++|+.|++++|.+..+++..+..+++|+.|++++|.+
T Consensus 452 ~L~~L~Ls~N-~l~~ip~~----~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 452 RLQELYISRN-KLKTLPDA----SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp TCCEEECCSS-CCSSCCCG----GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred hhcEEECCCC-ccCcCCCc----ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence 6777777755 35544431 3456677777766666666666666667777777765554
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=7.1e-31 Score=314.19 Aligned_cols=145 Identities=23% Similarity=0.339 Sum_probs=87.0
Q ss_pred EEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCC
Q 040774 218 ISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQL 296 (1035)
Q Consensus 218 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l 296 (1035)
++-++..+..+|..+. +++++|++++ +....+++..|.++++|++|++++|.+..+ |..|+++++||+|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCSSCCSSSC-SSCCEEECCS--CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCccccCCCcc-ccccEEEccC--CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 3334444555554332 4566666665 445555555566666666666666666655 34566666666666666666
Q ss_pred CCc--ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccc--cChhhhcCCCCCcEEEccCCccc
Q 040774 297 EDI--RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKV--IAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 297 ~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
+.+ ..|+++++|++|++++|.++.+|. .++++++|++|++++|. +.. +|.. ++++++|++|++++|.+.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccc
Confidence 544 456666666666666666666554 36666666666666665 443 3444 666666666666666654
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=304.03 Aligned_cols=487 Identities=19% Similarity=0.201 Sum_probs=288.6
Q ss_pred CCccEEEecCCCCCCCCCC--CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQG--WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L 289 (1035)
..++++++++|.+..++.. ..+++|++|++++ +....+++..|.++++|++|++++|.+..+| ..|+++++|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~--n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCC--CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 6899999999999877643 4899999999998 5677888888999999999999999999885 789999999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCc--chHhhccCCcCCEEcccCCccccccChhhhcCCCCC----cEEEc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQ--LPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQL----EELYM 361 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L----~~L~l 361 (1035)
++++|.++.+ ..++++++|++|++++|.++. +|..++++++|++|++++|. +..+++..++++++| ++|++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEEC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhccc
Confidence 9999999987 359999999999999999885 79999999999999999998 888877768888888 89999
Q ss_pred cCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCC--CCCCcc-ccccccEEEEEEccccccCCcccccchhhh
Q 040774 362 ANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAG--ILPSGF-FSRKLERYRIVVGDTWDRFDKYKTRRTLKL 438 (1035)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~--~~~~~~-~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l 438 (1035)
++|.+. ...+..+... +|+.|+++++... .++..+ ...+++...+..+..... ....
T Consensus 185 ~~n~l~-----------~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~-~~l~------- 244 (570)
T 2z63_A 185 SLNPMN-----------FIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-GNLE------- 244 (570)
T ss_dssp TTCCCC-----------EECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC-SSCE-------
T ss_pred CCCCce-----------ecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc-hhhh-------
Confidence 999887 2233344444 7899999887422 111111 233333333322110000 0000
Q ss_pred ccCCceeeccccCcc--ccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeeccc
Q 040774 439 KLNSRICLGEWRGMK--NVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQS 516 (1035)
Q Consensus 439 ~~~~~i~~~~~~~l~--~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 516 (1035)
.+....+.++. .++.+.+.++.......+.. ...+++|+.|+++++.
T Consensus 245 ----~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-------------------------- 293 (570)
T 2z63_A 245 ----KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLVSVT-------------------------- 293 (570)
T ss_dssp ----ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEESCE--------------------------
T ss_pred ----hcchhhhccccccchhhhhhhcchhhhhhchhh-hcCcCcccEEEecCcc--------------------------
Confidence 00000011111 12233333221111111111 0234455555555443
Q ss_pred ccccccccccccccCCCCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccc
Q 040774 517 LINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEK 596 (1035)
Q Consensus 517 ~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~ 596 (1035)
+..++. ....+ +|++|++.+|.- ..++. ..+++|++|++.+|..... . ..
T Consensus 294 ---l~~l~~---~~~~~-~L~~L~l~~n~~-~~l~~----~~l~~L~~L~l~~n~~~~~----~--------------~~ 343 (570)
T 2z63_A 294 ---IERVKD---FSYNF-GWQHLELVNCKF-GQFPT----LKLKSLKRLTFTSNKGGNA----F--------------SE 343 (570)
T ss_dssp ---ECSCCB---CCSCC-CCSEEEEESCBC-SSCCB----CBCSSCCEEEEESCBSCCB----C--------------CC
T ss_pred ---chhhhh---hhccC-CccEEeeccCcc-cccCc----ccccccCEEeCcCCccccc----c--------------cc
Confidence 111111 11223 455555554432 22221 2445555555555543110 0 00
Q ss_pred cccCCcceeeccccccccccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccc
Q 040774 597 LVLPKLEVLELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKES 676 (1035)
Q Consensus 597 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~ 676 (1035)
..+++|+.|++++|.+..+..... .+ ..+++|+.|++++| .+..+++. +..+++|++|++++|... ....
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~--~~-~~~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--- 413 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQ--SD-FGTTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHSNLK-QMSE--- 413 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEH--HH-HTCSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTSEEE-SCTT---
T ss_pred ccCCCCCEEeCcCCccCccccccc--cc-cccCccCEEECCCC-cccccccc--ccccCCCCEEEccCCccc-cccc---
Confidence 125566666666665443310000 00 14556666666666 34444332 355666777777666421 1110
Q ss_pred cccCCCceeccccCeeecccCCcccccccCCcccCCCCcceeeeecCCcc-cccccccccccccccCCccccCCCCCCCC
Q 040774 677 GVEADPSFVFPRLTILKLHYLPELRAFYPGVHTLECPMLTKLEVYICDKL-ESFTSELYSLHENNEEGQLIDVPVPAPRP 755 (1035)
Q Consensus 677 ~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l-~~lp~~~~~~~~~~~~~~~~~l~~~~~~~ 755 (1035)
......+++|+.|+++++.-....+. ....+++|++|++++|... ..+|...
T Consensus 414 ---~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~p~~~---------------------- 466 (570)
T 2z63_A 414 ---FSVFLSLRNLIYLDISHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIF---------------------- 466 (570)
T ss_dssp ---SCTTTTCTTCCEEECTTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGEECSCC----------------------
T ss_pred ---hhhhhcCCCCCEEeCcCCcccccchh--hhhcCCcCcEEECcCCcCccccchhhh----------------------
Confidence 01223456677777776532222221 1123677777777777532 1222100
Q ss_pred ccccccccCCceeEecccccCccccccCCCCcccCCCccEEEeecCCCcCCCchHHhhcCCceEEEEEeCccc
Q 040774 756 LFLVEKVLPSLEELRLSKNRDIAKIWQGPFPDYLSNKLKVLAIENDESEVLPPDLLERFHNLVNLELAYGSYK 828 (1035)
Q Consensus 756 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~i~c~~l~ 828 (1035)
..+++|+.|++++|. ++.+.+..+ ..+++|+.|++++|.+..++...+.++++|+.|++++|.++
T Consensus 467 -----~~l~~L~~L~l~~n~-l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 467 -----TELRNLTFLDLSQCQ-LEQLSPTAF--NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp -----TTCTTCCEEECTTSC-CCEECTTTT--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----hcccCCCEEECCCCc-cccCChhhh--hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 347788888888664 554433333 45677888888767777777777778888888888866664
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=8.5e-30 Score=303.04 Aligned_cols=382 Identities=18% Similarity=0.229 Sum_probs=221.7
Q ss_pred CCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEE
Q 040774 235 PQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEIL 311 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 311 (1035)
+.....+..+ +....+|..++ ++|++|++++|.++.+ |..|+++++||+|++++|.++.+ ..|+++++|++|
T Consensus 5 ~~~~~c~~~~--~~l~~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 5 DASGVCDGRS--RSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp CTTSEEECTT--SCCSSCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCceEECCC--CccccccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 3334444443 66778888653 7899999999999877 67899999999999999998866 679999999999
Q ss_pred ecccCcCCcchHh-hccCCcCCEEcccCCcccccc--ChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCC
Q 040774 312 SLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVI--APNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNL 388 (1035)
Q Consensus 312 ~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~l--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L 388 (1035)
++++|.++.+|.. ++++++|++|++++|. ++.+ |.. ++++++|++|++++|.... ......++++
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~~l~~L~~L~L~~n~~~~----------~~~~~~~~~l 147 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSL-FPNLTNLQTLRIGNVETFS----------EIRRIDFAGL 147 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCS-CTTCTTCCEEEEEESSSCC----------EECTTTTTTC
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhh-hhccCCccEEECCCCcccc----------ccCHhhhhcc
Confidence 9999999977765 8999999999999997 6643 444 8899999999999887431 1223467888
Q ss_pred CCCCEEEEeecCCCCC-CCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeecccccCcc
Q 040774 389 SRLTTLEINILDAGIL-PSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLT 467 (1035)
Q Consensus 389 ~~L~~L~l~~~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~ 467 (1035)
++|++|++++|..... |.. +..+++|+.|+++++...
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~-----------------------------------------l~~l~~L~~L~l~~n~~~- 185 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQS-----------------------------------------LKSIRDIHHLTLHLSESA- 185 (549)
T ss_dssp CEEEEEEEEETTCCEECTTT-----------------------------------------TTTCSEEEEEEEECSBST-
T ss_pred cccCeeeccCCcccccChhh-----------------------------------------hhccccCceEecccCccc-
Confidence 8999999988875432 211 334456666666654321
Q ss_pred ccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEEeecCCC
Q 040774 468 NVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKL 547 (1035)
Q Consensus 468 ~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L 547 (1035)
..+....+.+++|++|+++++.- ..+......... .+++|+.|.+.++. +
T Consensus 186 -~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~---------------------------~~~~L~~L~l~~n~-l 235 (549)
T 2z81_A 186 -FLLEIFADILSSVRYLELRDTNL-ARFQFSPLPVDE---------------------------VSSPMKKLAFRGSV-L 235 (549)
T ss_dssp -THHHHHHHSTTTBSEEEEESCBC-TTCCCCCCSSCC---------------------------CCCCCCEEEEESCE-E
T ss_pred -ccchhhHhhcccccEEEccCCcc-ccccccccchhh---------------------------hhhcccceeccccc-c
Confidence 11111113466777777776651 110000000111 23445555554432 1
Q ss_pred cccCC---hhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCccccc
Q 040774 548 KNLFS---FSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAI 624 (1035)
Q Consensus 548 ~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 624 (1035)
..... ......+++|+++++.+|...... .+.. ........+++|+.|.+.++.+...........+
T Consensus 236 ~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~-----~~~~-----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~ 305 (549)
T 2z81_A 236 TDESFNELLKLLRYILELSEVEFDDCTLNGLG-----DFNP-----SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV 305 (549)
T ss_dssp EHHHHHHHHGGGGGCTTCCEEEEESCEEECCS-----CCCC-----CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH
T ss_pred chhHHHHHHHHhhhhccccccccccccccccc-----cccc-----cchhhhhhhcccccccccccccchhhhcccchhh
Confidence 11000 011234556666666666532100 0000 0001112256677777776654433211110111
Q ss_pred cccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCcccccc
Q 040774 625 SCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFY 704 (1035)
Q Consensus 625 p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~ 704 (1035)
...+++|+.|++.+| .++.+| ..++..+++|++|++++|.....++.. ......+++|+.|+++++ .++.++
T Consensus 306 ~~~~~~L~~L~l~~n-~l~~ip-~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~~~~l~~L~~L~Ls~N-~l~~~~ 377 (549)
T 2z81_A 306 YSLLEKVKRITVENS-KVFLVP-CSFSQHLKSLEFLDLSENLMVEEYLKN-----SACKGAWPSLQTLVLSQN-HLRSMQ 377 (549)
T ss_dssp HHHSTTCCEEEEESS-CCCCCC-HHHHHHCTTCCEEECCSSCCCHHHHHH-----HTCTTSSTTCCEEECTTS-CCCCHH
T ss_pred hhhcccceEEEeccC-ccccCC-HHHHhcCccccEEEccCCccccccccc-----hhhhhccccCcEEEccCC-cccccc
Confidence 123457888888887 466543 344467888888888887633222110 011234567777777764 344332
Q ss_pred c-CCcccCCCCcceeeeecC
Q 040774 705 P-GVHTLECPMLTKLEVYIC 723 (1035)
Q Consensus 705 ~-~~~~~~~~~L~~L~i~~c 723 (1035)
. +.....+++|++|++++|
T Consensus 378 ~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 378 KTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp HHHHHGGGCTTCCEEECTTC
T ss_pred cchhhhhcCCCCCEEECCCC
Confidence 1 111223566666666665
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=6.8e-28 Score=292.75 Aligned_cols=142 Identities=24% Similarity=0.360 Sum_probs=107.6
Q ss_pred CCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc-
Q 040774 222 DNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI- 299 (1035)
Q Consensus 222 ~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l- 299 (1035)
+.++.+||..+. +++++|++++ +.+..+++..|.++++|++|||++|.|+.+|+ +|.++++|++|+|++|+++.+
T Consensus 40 ~~~l~~vP~~lp-~~~~~LdLs~--N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 40 ELNFYKIPDNLP-FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TSCCSSCCSSSC-TTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcCccCCCCC-cCCCEEEeeC--CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 345667776553 4678888886 66777887778888888888888888887744 678888888888888888766
Q ss_pred -ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccC-hhhhcCCCCCcEEEccCCccc
Q 040774 300 -RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIA-PNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 300 -~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp-~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
..|+++++|++|++++|.++.+|.. ++++++|++|++++|. +..++ +..++++++|++|++++|.+.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcccc
Confidence 4678888888888888888877754 7888888888888886 54432 233778888888888888776
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.8e-28 Score=287.57 Aligned_cols=143 Identities=20% Similarity=0.250 Sum_probs=104.4
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
+++++++|.+..+|..+. ++|++|++++ +....+++..|.++++|++|++++|.+..+ |..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQ--NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCS--SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCC--CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 577888888888876655 7788888876 556667766677788888888888887766 667778888888888888
Q ss_pred CCCCcccccCCCCCcEEecccCcCCc--chHhhccCCcCCEEcccCCccccccChhhhcCCCCC--cEEEccCCcc
Q 040774 295 QLEDIRVIGELRKLEILSLQASAIEQ--LPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQL--EELYMANCSI 366 (1035)
Q Consensus 295 ~l~~l~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L--~~L~l~~~~~ 366 (1035)
.++.++.. .+++|++|++++|.++. +|..++++++|++|++++|. +.. ..++.+++| ++|++++|.+
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeecccc
Confidence 77766444 77778888888777764 46677777777777777776 443 225666666 7777777766
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=2.5e-27 Score=287.71 Aligned_cols=146 Identities=24% Similarity=0.280 Sum_probs=127.0
Q ss_pred CCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchH
Q 040774 247 NSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPM 323 (1035)
Q Consensus 247 ~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~ 323 (1035)
....+||..+ -..+++|||++|.|+.+| .+|.++++||+|+|++|.++.+ ..|++|++|++|+|++|+++.+|.
T Consensus 41 ~~l~~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 41 LNFYKIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL 117 (635)
T ss_dssp SCCSSCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG
T ss_pred CCcCccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH
Confidence 4567788764 468999999999999996 5899999999999999999987 579999999999999999999986
Q ss_pred h-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCC
Q 040774 324 E-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAG 402 (1035)
Q Consensus 324 ~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 402 (1035)
. ++++++|++|++++|. ++.+|+..++++++|++|++++|.+.. ...+..++.+++|++|++++|.+.
T Consensus 118 ~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~----------~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQS----------FKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCC----------CCCCGGGGGCTTCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCcccc----------CCCchhhccchhhhhhcccCcccc
Confidence 5 7999999999999997 899998779999999999999998861 234567889999999999999866
Q ss_pred CCCC
Q 040774 403 ILPS 406 (1035)
Q Consensus 403 ~~~~ 406 (1035)
.++.
T Consensus 187 ~~~~ 190 (635)
T 4g8a_A 187 SIYC 190 (635)
T ss_dssp EECG
T ss_pred cccc
Confidence 5543
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.2e-27 Score=279.90 Aligned_cols=140 Identities=21% Similarity=0.304 Sum_probs=96.2
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+++++++ +....+|..++ ++|++|++++|.+..++ ..|.++++|++|++++|.++.+ ..|+++++|++|+++
T Consensus 3 ~~l~ls~--n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSK--NGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77 (520)
T ss_dssp CEEECTT--SCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECC
T ss_pred ceEecCC--CCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecC
Confidence 4566665 45556776553 67777777777777664 5677777777777777777765 567777777777777
Q ss_pred cCcCCcchHhhccCCcCCEEcccCCccccc--cChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCC-
Q 040774 315 ASAIEQLPMEIGQLTQLKLLDLSNCSKLKV--IAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRL- 391 (1035)
Q Consensus 315 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L- 391 (1035)
+|.++.+|.. .+++|++|++++|. ++. +|.. ++++++|++|++++|.+. . ..+..+++|
T Consensus 78 ~N~l~~lp~~--~l~~L~~L~L~~N~-l~~~~~p~~-~~~l~~L~~L~L~~n~l~-----------~---~~~~~l~~L~ 139 (520)
T 2z7x_B 78 HNKLVKISCH--PTVNLKHLDLSFNA-FDALPICKE-FGNMSQLKFLGLSTTHLE-----------K---SSVLPIAHLN 139 (520)
T ss_dssp SSCCCEEECC--CCCCCSEEECCSSC-CSSCCCCGG-GGGCTTCCEEEEEESSCC-----------G---GGGGGGTTSC
T ss_pred CCceeecCcc--ccCCccEEeccCCc-cccccchhh-hccCCcceEEEecCcccc-----------h---hhccccccce
Confidence 7777777766 67777777777776 554 3444 777777777777777665 1 234445555
Q ss_pred -CEEEEeecC
Q 040774 392 -TTLEINILD 400 (1035)
Q Consensus 392 -~~L~l~~~~ 400 (1035)
+.|++++|.
T Consensus 140 L~~L~l~~n~ 149 (520)
T 2z7x_B 140 ISKVLLVLGE 149 (520)
T ss_dssp EEEEEEEECT
T ss_pred eeEEEeeccc
Confidence 777776665
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.1e-27 Score=283.51 Aligned_cols=366 Identities=13% Similarity=0.150 Sum_probs=203.1
Q ss_pred CChhhhcCCCCccEEEccCCcCcc------------------Cccccc--CCCCCcEEEcCCCCCCC-c-ccccCCCCCc
Q 040774 252 IPDNIFIGMPKLKVLDFTRMRLLS------------------LPSSIH--LLTDLRTLCLDSCQLED-I-RVIGELRKLE 309 (1035)
Q Consensus 252 i~~~~f~~~~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~l~~-l-~~i~~L~~L~ 309 (1035)
+|.. |.++++|++|+|++|.++. +|+.++ ++++|++|++++|.+.. + ..++++++|+
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 4443 4566666666666666665 666666 66666666666666543 2 5666666666
Q ss_pred EEecccCc-CCc--chHhhccC------CcCCEEcccCCccccccCh-hhhcCCCCCcEEEccCCccceeeccccccccc
Q 040774 310 ILSLQASA-IEQ--LPMEIGQL------TQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERSN 379 (1035)
Q Consensus 310 ~L~L~~~~-l~~--lp~~i~~L------~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (1035)
+|++++|. ++. +|..++++ ++|++|++++|. ++.+|. +.++++++|++|++++|.+. +
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~-----------g 344 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLE-----------G 344 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCE-----------E
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCc-----------c
Confidence 66666665 653 66666655 666666666665 556665 12666666666666666654 2
Q ss_pred cCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceee
Q 040774 380 ASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLC 459 (1035)
Q Consensus 380 ~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~ 459 (1035)
..+ .++.+++|+.|++++|....+|.. +
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~~lp~~-----------------------------------------l---------- 372 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQITEIPAN-----------------------------------------F---------- 372 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEEECCTT-----------------------------------------S----------
T ss_pred chh-hhCCCCCCCEEECCCCccccccHh-----------------------------------------h----------
Confidence 222 555556666666665543333322 1
Q ss_pred cccccCccccccccCccccCC-ccEEEeecCCccceeccCCccccCcCcccceeeccccccccccccc----ccccCCCC
Q 040774 460 LDELPGLTNVLHDLDGEGFAE-LKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHG----QLRAESFC 534 (1035)
Q Consensus 460 L~~~~~~~~~l~~l~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~~~l~ 534 (1035)
..+++ |++|+++++. +..++.. +....+++|+.|++.++.--...+.. ....-.++
T Consensus 373 ----------------~~l~~~L~~L~Ls~N~-l~~lp~~--~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 373 ----------------CGFTEQVENLSFAHNK-LKYIPNI--FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp ----------------EEECTTCCEEECCSSC-CSSCCSC--CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred ----------------hhhcccCcEEEccCCc-Ccccchh--hhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 22333 4444444443 1111110 01111234444444443211111000 00011345
Q ss_pred CcceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeecccccccc
Q 040774 535 NLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAK 614 (1035)
Q Consensus 535 ~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~ 614 (1035)
+|+.|+++++ .+..++.. ....+++|++|++++|........+..... .....+++|+.|++++|.+..
T Consensus 434 ~L~~L~Ls~N-~l~~lp~~-~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~---------~~~~~l~~L~~L~Ls~N~l~~ 502 (636)
T 4eco_A 434 NVSSINLSNN-QISKFPKE-LFSTGSPLSSINLMGNMLTEIPKNSLKDEN---------ENFKNTYLLTSIDLRFNKLTK 502 (636)
T ss_dssp CEEEEECCSS-CCCSCCTH-HHHTTCCCSEEECCSSCCSBCCSSSSEETT---------EECTTGGGCCEEECCSSCCCB
T ss_pred CCCEEECcCC-ccCcCCHH-HHccCCCCCEEECCCCCCCCcCHHHhcccc---------ccccccCCccEEECcCCcCCc
Confidence 7777777774 34455432 455678888888888875321110000000 001113489999999997776
Q ss_pred ccccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeec
Q 040774 615 IWHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKL 694 (1035)
Q Consensus 615 ~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L 694 (1035)
+..... ...+++|+.|++++| .++.+|. . +..+++|+.|++++|+.+..-. ..+..+.....+++|+.|++
T Consensus 503 lp~~~~----~~~l~~L~~L~Ls~N-~l~~ip~-~-~~~l~~L~~L~Ls~N~~ls~N~--l~~~~p~~l~~l~~L~~L~L 573 (636)
T 4eco_A 503 LSDDFR----ATTLPYLVGIDLSYN-SFSKFPT-Q-PLNSSTLKGFGIRNQRDAQGNR--TLREWPEGITLCPSLTQLQI 573 (636)
T ss_dssp CCGGGS----TTTCTTCCEEECCSS-CCSSCCC-G-GGGCSSCCEEECCSCBCTTCCB--CCCCCCTTGGGCSSCCEEEC
T ss_pred cChhhh----hccCCCcCEEECCCC-CCCCcCh-h-hhcCCCCCEEECCCCcccccCc--ccccChHHHhcCCCCCEEEC
Confidence 543221 025678999999998 6666543 2 4678999999997654211000 00222334556889999999
Q ss_pred ccCCcccccccCCcccCCCCcceeeeecCCcc
Q 040774 695 HYLPELRAFYPGVHTLECPMLTKLEVYICDKL 726 (1035)
Q Consensus 695 ~~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l 726 (1035)
+++. ++.++... .++|+.|++++|+..
T Consensus 574 s~N~-l~~ip~~~----~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 574 GSND-IRKVNEKI----TPNISVLDIKDNPNI 600 (636)
T ss_dssp CSSC-CCBCCSCC----CTTCCEEECCSCTTC
T ss_pred CCCc-CCccCHhH----hCcCCEEECcCCCCc
Confidence 9964 47776543 379999999998644
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=3.1e-27 Score=283.53 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=101.0
Q ss_pred CCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-------------cCccc---------------------c
Q 040774 235 PQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-------------SLPSS---------------------I 280 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-------------~lp~~---------------------i 280 (1035)
.+++.|++.+ +...+.+|+. |.++++|++|+|++|.+. .+|.. +
T Consensus 81 ~~V~~L~L~~-~~l~g~lp~~-l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEG-FGASGRVPDA-IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTT-SCCEEEECGG-GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEEecC-cccCCcCChH-HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhH
Confidence 4788899988 5666778865 588999999999998652 11111 1
Q ss_pred c-------------------CCCCCcEEEcC--CCCCCCc-ccccCCCCCcEEecccCcCCc------------------
Q 040774 281 H-------------------LLTDLRTLCLD--SCQLEDI-RVIGELRKLEILSLQASAIEQ------------------ 320 (1035)
Q Consensus 281 ~-------------------~L~~Lr~L~L~--~~~l~~l-~~i~~L~~L~~L~L~~~~l~~------------------ 320 (1035)
+ ....++.+.+. +|.++.+ ..++++++|++|++++|.++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 1 01111111111 2344444 567777777777777777776
Q ss_pred chHhhc--cCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCc-cceeeccccccccc-cCHHhhcCC------CC
Q 040774 321 LPMEIG--QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCS-IEWEVLGLSIERSN-ASLVELKNL------SR 390 (1035)
Q Consensus 321 lp~~i~--~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~-~~~~~l~~L------~~ 390 (1035)
+|..++ ++++|++|++++|.....+|.. ++++++|++|++++|. +. + ..+..++.+ ++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~-----------~~~lp~~~~~L~~~~~l~~ 306 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGIS-----------GEQLKDDWQALADAPVGEK 306 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSC-----------HHHHHHHHHHHHHSGGGGT
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCc-----------cccchHHHHhhhccccCCC
Confidence 777777 7777777777777755666655 7777777777777776 54 2 234445444 67
Q ss_pred CCEEEEeecCCCCCCC
Q 040774 391 LTTLEINILDAGILPS 406 (1035)
Q Consensus 391 L~~L~l~~~~~~~~~~ 406 (1035)
|++|++++|....+|.
T Consensus 307 L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 307 IQIIYIGYNNLKTFPV 322 (636)
T ss_dssp CCEEECCSSCCSSCCC
T ss_pred CCEEECCCCcCCccCc
Confidence 7777777766554443
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.9e-26 Score=274.10 Aligned_cols=126 Identities=21% Similarity=0.375 Sum_probs=76.0
Q ss_pred CCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEccc
Q 040774 261 PKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS 337 (1035)
Q Consensus 261 ~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 337 (1035)
++|++|++++|.+..+| .+|+++++|++|++++|.++.+ ..|+++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls 129 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLS 129 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECC
Confidence 55666666666666553 4566666666666666666644 4566666666666666666666655 66667777776
Q ss_pred CCccccccCh-hhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 338 NCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 338 ~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
+|. +..+|. ..++++++|++|++++|.+. ...+..+..+ +|+.|++++|..
T Consensus 130 ~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~-----------~~~~~~l~~L-~L~~L~L~~n~l 181 (562)
T 3a79_B 130 FND-FDVLPVCKEFGNLTKLTFLGLSAAKFR-----------QLDLLPVAHL-HLSCILLDLVSY 181 (562)
T ss_dssp SSC-CSBCCCCGGGGGCTTCCEEEEECSBCC-----------TTTTGGGTTS-CEEEEEEEESSC
T ss_pred CCC-ccccCchHhhcccCcccEEecCCCccc-----------cCchhhhhhc-eeeEEEeecccc
Confidence 665 555441 33667777777777776654 2222333333 337777776654
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=8.7e-27 Score=283.21 Aligned_cols=365 Identities=13% Similarity=0.117 Sum_probs=198.0
Q ss_pred CChhhhcCCCCccEEEccCCcCcc------------------Cccccc--CCCCCcEEEcCCCCCCC-c-ccccCCCCCc
Q 040774 252 IPDNIFIGMPKLKVLDFTRMRLLS------------------LPSSIH--LLTDLRTLCLDSCQLED-I-RVIGELRKLE 309 (1035)
Q Consensus 252 i~~~~f~~~~~Lr~L~Ls~~~i~~------------------lp~~i~--~L~~Lr~L~L~~~~l~~-l-~~i~~L~~L~ 309 (1035)
+|.. |.++++|++|+|++|.++. +|+.++ ++++|++|+|++|.+.. + ..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 4443 4556666666666666655 566555 66666666666665432 2 4566666666
Q ss_pred EEecccCc-CCc--chHhhccCC-------cCCEEcccCCccccccCh-hhhcCCCCCcEEEccCCccceeecccccccc
Q 040774 310 ILSLQASA-IEQ--LPMEIGQLT-------QLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERS 378 (1035)
Q Consensus 310 ~L~L~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (1035)
+|++++|. ++. +|..++++. +|++|++++|. +..+|. +.++++++|++|++++|.+.
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~----------- 586 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR----------- 586 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC-----------
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc-----------
Confidence 66666664 553 555555554 66666666665 445555 12566666666666666543
Q ss_pred ccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCcccccee
Q 040774 379 NASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYL 458 (1035)
Q Consensus 379 ~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L 458 (1035)
..+ .++.+++|+.|++++|....+|.. +
T Consensus 587 -~lp-~~~~L~~L~~L~Ls~N~l~~lp~~-----------------------------------------l--------- 614 (876)
T 4ecn_A 587 -HLE-AFGTNVKLTDLKLDYNQIEEIPED-----------------------------------------F--------- 614 (876)
T ss_dssp -BCC-CCCTTSEESEEECCSSCCSCCCTT-----------------------------------------S---------
T ss_pred -cch-hhcCCCcceEEECcCCccccchHH-----------------------------------------H---------
Confidence 112 455555666666655554433332 1
Q ss_pred ecccccCccccccccCccccCC-ccEEEeecCCccceeccCCccccCcCcccceeeccccccccccccc--ccccCCCCC
Q 040774 459 CLDELPGLTNVLHDLDGEGFAE-LKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHG--QLRAESFCN 535 (1035)
Q Consensus 459 ~L~~~~~~~~~l~~l~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~l~~ 535 (1035)
..+++ |+.|++++|. +..++.. +.....++|+.|+++++.--..++.- .......++
T Consensus 615 -----------------~~l~~~L~~L~Ls~N~-L~~lp~~--~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 615 -----------------CAFTDQVEGLGFSHNK-LKYIPNI--FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp -----------------CEECTTCCEEECCSSC-CCSCCSC--CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred -----------------hhccccCCEEECcCCC-CCcCchh--hhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 22333 4444444443 1111100 01111223445554443211111000 011113347
Q ss_pred cceEEEeecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccc
Q 040774 536 LKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKI 615 (1035)
Q Consensus 536 L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~ 615 (1035)
|+.|++++|. +..++. .....+++|++|++++|........+.... ......+++|+.|+|++|.+..+
T Consensus 675 L~~L~Ls~N~-L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~---------~~~l~nl~~L~~L~Ls~N~L~~l 743 (876)
T 4ecn_A 675 ASTVTLSYNE-IQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPK---------DGNYKNTYLLTTIDLRFNKLTSL 743 (876)
T ss_dssp EEEEECCSSC-CCSCCH-HHHHTTCCCSEEECCSCCCSCCCTTSSSCT---------TSCCTTGGGCCEEECCSSCCCCC
T ss_pred cCEEEccCCc-CCccCH-HHHccCCCCCEEECCCCcCCccChHHhccc---------cccccccCCccEEECCCCCCccc
Confidence 7778877753 444432 244577888888888886531110000000 00011245899999999977755
Q ss_pred cccCccccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecc
Q 040774 616 WHNQLSAAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLH 695 (1035)
Q Consensus 616 ~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~ 695 (1035)
..... ...+++|+.|++++| .++.+|.. +..+++|+.|++++|+.+..-. -.+..+.....+++|+.|+++
T Consensus 744 p~~l~----~~~l~~L~~L~Ls~N-~L~~lp~~--l~~L~~L~~L~Ls~N~~ls~N~--l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 744 SDDFR----ATTLPYLSNMDVSYN-CFSSFPTQ--PLNSSQLKAFGIRHQRDAEGNR--ILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp CGGGS----TTTCTTCCEEECCSS-CCSSCCCG--GGGCTTCCEEECCCCBCTTCCB--CCCCCCTTGGGCSSCCEEECC
T ss_pred hHHhh----hccCCCcCEEEeCCC-CCCccchh--hhcCCCCCEEECCCCCCccccc--ccccChHHHhcCCCCCEEECC
Confidence 43221 025778999999998 66665432 4689999999998755221000 012223345668899999999
Q ss_pred cCCcccccccCCcccCCCCcceeeeecCCcc
Q 040774 696 YLPELRAFYPGVHTLECPMLTKLEVYICDKL 726 (1035)
Q Consensus 696 ~~~~L~~~~~~~~~~~~~~L~~L~i~~c~~l 726 (1035)
++. +..++... .++|+.|++++|+..
T Consensus 815 ~N~-L~~Ip~~l----~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 815 SND-IRKVDEKL----TPQLYILDIADNPNI 840 (876)
T ss_dssp SSC-CCBCCSCC----CSSSCEEECCSCTTC
T ss_pred CCC-CCccCHhh----cCCCCEEECCCCCCC
Confidence 974 47777653 479999999999744
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=6.1e-27 Score=284.59 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=65.1
Q ss_pred CccEEEeecCCCcCCCchHH-hhcCCceEEEEEeCccceecccCCccccccccccccccccccccccCceeeeccCCCcc
Q 040774 792 KLKVLAIENDESEVLPPDLL-ERFHNLVNLELAYGSYKELFSNEGQVETHVGKLAQIRYLTLEHLNDLKHLWLWEQNSKL 870 (1035)
Q Consensus 792 ~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~i~c~~l~~l~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~L~i~~~~~~~ 870 (1035)
+|+.|++++|.+..+|..+. ..+++|+.|++++|.++.+ |..+..+++|+.|++++++.+..-.+.+..|..
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l-------p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~ 801 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-------PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG 801 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC-------CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc-------chhhhcCCCCCEEECCCCCCcccccccccChHH
Confidence 66666665555556665543 3677777777776666653 333456677777777664422211122223556
Q ss_pred cccccccceEEeecccCccccCCCcccccCccEEEeccCC
Q 040774 871 NTVFQNLETLSAHFCLNLTNLMPSSASFRCLKELRVCACE 910 (1035)
Q Consensus 871 ~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~L~~L~i~~c~ 910 (1035)
+..+++|+.|++++|.- ..+|..+ +++|+.|++++|+
T Consensus 802 l~~L~~L~~L~Ls~N~L-~~Ip~~l--~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNP 838 (876)
T ss_dssp GGGCSSCCEEECCSSCC-CBCCSCC--CSSSCEEECCSCT
T ss_pred HhcCCCCCEEECCCCCC-CccCHhh--cCCCCEEECCCCC
Confidence 66777777777777655 6666654 2577777776665
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=1.2e-26 Score=275.72 Aligned_cols=145 Identities=23% Similarity=0.305 Sum_probs=127.0
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~ 292 (1035)
..++++++++.+..+|..+. +++++|++++ +....+++..|.++++|++|++++|.++.+ |..|+++++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQ--NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCS--SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCC--CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 44899999999999998765 8999999997 677888888899999999999999999988 7789999999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcch--HhhccCCcCCEEcccCCccccccChhhhcCCCCC--cEEEccCCcc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLP--MEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQL--EELYMANCSI 366 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L--~~L~l~~~~~ 366 (1035)
+|.++.++.. .+++|++|++++|.++.+| ..++++++|++|++++|. +.... ++.+++| ++|++++|.+
T Consensus 109 ~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 9999988544 8999999999999999764 789999999999999987 65532 5556666 9999999987
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=4e-24 Score=247.50 Aligned_cols=168 Identities=21% Similarity=0.256 Sum_probs=134.7
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++++++.++.+..++....+++|++|++++ +....+++ |.++++|++|++++|.+..++. ++++++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~--n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSN--NQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCS--SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCC--CccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 47888999888888888766788899999887 55666665 6888899999999998888876 8888999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|.++.++.++++++|++|++++|.+..+|. ++.+++|++|++++ . +..+++ ++++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVS----- 190 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCC-----
Confidence 9888888668888999999999888888764 88888999998864 2 555544 788889999998888765
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCC
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGI 403 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 403 (1035)
.+..+..+++|++|++++|....
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCC
T ss_pred --------CChhhccCCCCCEEEecCCcccc
Confidence 22457788888888888876543
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.3e-24 Score=248.67 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=80.0
Q ss_pred CCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-cCcccccCCCCC-------------cEEEcCCCC
Q 040774 230 QGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-SLPSSIHLLTDL-------------RTLCLDSCQ 295 (1035)
Q Consensus 230 ~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-~lp~~i~~L~~L-------------r~L~L~~~~ 295 (1035)
+.+..++||+|++++ +..+.+|++ |+++++|++|++++|.+. .+|.+++++++| ++|++++|.
T Consensus 6 ~~~~~~~L~~L~l~~--n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 6 RNVSNTFLQEPLRHS--SNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred cccccccchhhhccc--CchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 344556777777776 344777766 377788888888877776 567777777764 777777777
Q ss_pred CCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccc
Q 040774 296 LEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSI 375 (1035)
Q Consensus 296 l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 375 (1035)
++.++.+ .++|++|++++|.++.+|.. +.+|++|++++|. ++.+|.. .++|++|++++|.+.
T Consensus 83 l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~----~~~L~~L~L~~n~l~-------- 144 (454)
T 1jl5_A 83 LSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL----PPLLEYLGVSNNQLE-------- 144 (454)
T ss_dssp CSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC----CTTCCEEECCSSCCS--------
T ss_pred cccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC----CCCCCEEECcCCCCC--------
Confidence 6665443 35677777777777776642 3667777777765 5555431 156777777777665
Q ss_pred cccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 376 ERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 376 ~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
..+ +++++++|++|++++|....+|
T Consensus 145 ----~lp-~~~~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 145 ----KLP-ELQNSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp ----SCC-CCTTCTTCCEEECCSSCCSCCC
T ss_pred ----CCc-ccCCCCCCCEEECCCCcCcccC
Confidence 122 4667777777777766654443
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1e-23 Score=244.04 Aligned_cols=343 Identities=21% Similarity=0.240 Sum_probs=214.8
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEe
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILS 312 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 312 (1035)
.++++++|.+.+ +....+|. |..+++|++|++++|.+..+|. ++++++|++|++++|.+..+..++++++|++|+
T Consensus 44 ~l~~l~~L~l~~--~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 44 DLDQVTTLQADR--LGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHTCCEEECCS--SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred HhccccEEecCC--CCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 356888898886 55666765 5789999999999999998877 899999999999999988885699999999999
Q ss_pred cccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCC
Q 040774 313 LQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392 (1035)
Q Consensus 313 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (1035)
+++|.++.+|. +.++++|++|++++|. +..++. ++++++|++|++++ .+. ....++++++|+
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~-~~~-------------~~~~~~~l~~L~ 180 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGN-QVT-------------DLKPLANLTTLE 180 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEE-SCC-------------CCGGGTTCTTCC
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCC-ccc-------------CchhhccCCCCC
Confidence 99999988876 8899999999999987 777764 88999999999863 222 223488889999
Q ss_pred EEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeecccccCccccccc
Q 040774 393 TLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVLHD 472 (1035)
Q Consensus 393 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l~~ 472 (1035)
.|++++|....++. +..+++|+.|+++++.. ....+
T Consensus 181 ~L~l~~n~l~~~~~------------------------------------------l~~l~~L~~L~l~~n~l-~~~~~- 216 (466)
T 1o6v_A 181 RLDISSNKVSDISV------------------------------------------LAKLTNLESLIATNNQI-SDITP- 216 (466)
T ss_dssp EEECCSSCCCCCGG------------------------------------------GGGCTTCSEEECCSSCC-CCCGG-
T ss_pred EEECcCCcCCCChh------------------------------------------hccCCCCCEEEecCCcc-ccccc-
Confidence 99998876543322 23334555566555432 11211
Q ss_pred cCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEEeecCCCcccCC
Q 040774 473 LDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFS 552 (1035)
Q Consensus 473 l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~ 552 (1035)
+ +.+++|+.|+++++. +..+. ....++ +|+.|++++|. +..++
T Consensus 217 ~--~~l~~L~~L~l~~n~-l~~~~-----~l~~l~---------------------------~L~~L~l~~n~-l~~~~- 259 (466)
T 1o6v_A 217 L--GILTNLDELSLNGNQ-LKDIG-----TLASLT---------------------------NLTDLDLANNQ-ISNLA- 259 (466)
T ss_dssp G--GGCTTCCEEECCSSC-CCCCG-----GGGGCT---------------------------TCSEEECCSSC-CCCCG-
T ss_pred c--cccCCCCEEECCCCC-cccch-----hhhcCC---------------------------CCCEEECCCCc-cccch-
Confidence 1 345666666666654 11110 223344 44444444432 12221
Q ss_pred hhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCccccccccCCccc
Q 040774 553 FSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAISCSVQNLT 632 (1035)
Q Consensus 553 ~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~ 632 (1035)
.+..+++|++|++++|..... +.+ ..+++|+.|++++|.+..+.. . ..+++|+
T Consensus 260 --~~~~l~~L~~L~l~~n~l~~~-----~~~-------------~~l~~L~~L~L~~n~l~~~~~--~-----~~l~~L~ 312 (466)
T 1o6v_A 260 --PLSGLTKLTELKLGANQISNI-----SPL-------------AGLTALTNLELNENQLEDISP--I-----SNLKNLT 312 (466)
T ss_dssp --GGTTCTTCSEEECCSSCCCCC-----GGG-------------TTCTTCSEEECCSSCCSCCGG--G-----GGCTTCS
T ss_pred --hhhcCCCCCEEECCCCccCcc-----ccc-------------cCCCccCeEEcCCCcccCchh--h-----cCCCCCC
Confidence 134455555555555543210 001 125566666666665544321 1 1455677
Q ss_pred EEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCcccccccCCcccCC
Q 040774 633 RLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYPGVHTLEC 712 (1035)
Q Consensus 633 ~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~ 712 (1035)
.|++++| .++..++ +..+++|+.|++++|. +..+. ....+++|+.|+++++. ++++.. ...+
T Consensus 313 ~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~L~~L~l~~n~-l~~~~~---~~~l 374 (466)
T 1o6v_A 313 YLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS---------SLANLTNINWLSAGHNQ-ISDLTP---LANL 374 (466)
T ss_dssp EEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG---------GGTTCTTCCEEECCSSC-CCBCGG---GTTC
T ss_pred EEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch---------hhccCCCCCEEeCCCCc-cCccch---hhcC
Confidence 7777766 4554443 2566677777776663 32221 22345667777777653 333333 2346
Q ss_pred CCcceeeeecCC
Q 040774 713 PMLTKLEVYICD 724 (1035)
Q Consensus 713 ~~L~~L~i~~c~ 724 (1035)
++|+.|++++|+
T Consensus 375 ~~L~~L~l~~n~ 386 (466)
T 1o6v_A 375 TRITQLGLNDQA 386 (466)
T ss_dssp TTCCEEECCCEE
T ss_pred CCCCEEeccCCc
Confidence 777777777764
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.4e-24 Score=246.47 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=40.1
Q ss_pred CCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCC-Cc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcc
Q 040774 259 GMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLE-DI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDL 336 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~-~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l 336 (1035)
+.++||+|++++|.+..+|++|+++++|++|++++|.+. .+ .+++++++|+++++++|.. .++++|++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------~~l~~L~l 78 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------RQAHELEL 78 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH----------HTCSEEEC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc----------cCCCEEEe
Confidence 568999999999999999999999999999999999876 33 7888888874444443321 33445555
Q ss_pred cCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 337 SNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 337 ~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
++|. ++.+|.. .++|++|++++|.+.
T Consensus 79 ~~~~-l~~lp~~----~~~L~~L~l~~n~l~ 104 (454)
T 1jl5_A 79 NNLG-LSSLPEL----PPHLESLVASCNSLT 104 (454)
T ss_dssp TTSC-CSCCCSC----CTTCSEEECCSSCCS
T ss_pred cCCc-cccCCCC----cCCCCEEEccCCcCC
Confidence 5544 4444431 234555555554443
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=2.9e-23 Score=237.82 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=50.2
Q ss_pred cCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEccc
Q 040774 258 IGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLS 337 (1035)
Q Consensus 258 ~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~ 337 (1035)
.++++|++|++++|.+..+| .++.+++|++|++++|.++.++ ++.+++|++|++++|.++.+| ++++++|++|+++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 34445555555555554444 3445555555555555544443 445555555555555554443 4455555555555
Q ss_pred CCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 338 NCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 338 ~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
+|. ++.+| ++++++|++|++++|.+.
T Consensus 115 ~N~-l~~l~---~~~l~~L~~L~l~~N~l~ 140 (457)
T 3bz5_A 115 TNK-LTKLD---VSQNPLLTYLNCARNTLT 140 (457)
T ss_dssp SSC-CSCCC---CTTCTTCCEEECTTSCCS
T ss_pred CCc-CCeec---CCCCCcCCEEECCCCccc
Confidence 554 44442 444555555555555443
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1.1e-23 Score=243.76 Aligned_cols=173 Identities=17% Similarity=0.251 Sum_probs=123.1
Q ss_pred EEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-cC-cccccCCCCCcEEEcCCC
Q 040774 217 RISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-SL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 217 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
.++..++.+..+|. -.++|++|++++ +....+++..|.++++|++|++++|.+. .+ |..|.++++|++|++++|
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSL--NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCS--SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecC--CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 45566666777776 236788888886 5556666666788888888888888776 44 567888888888888888
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCc-chHh--hccCCcCCEEcccCCcccccc-ChhhhcCCCCCcEEEccCCccce
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQ-LPME--IGQLTQLKLLDLSNCSKLKVI-APNVLSNLSQLEELYMANCSIEW 368 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~l~~L~~L~~L~l~~~~~~~ 368 (1035)
.++.+ ..++++++|++|++++|.++. .|.. ++.+++|++|++++|. +..+ |...++++++|++|++++|.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~- 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVK- 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBS-
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCccc-
Confidence 87754 678888888888888888874 4544 7888888888888887 5555 4334778888888888888776
Q ss_pred eeccccccccccCHHhhcCC--CCCCEEEEeecCCCCCC
Q 040774 369 EVLGLSIERSNASLVELKNL--SRLTTLEINILDAGILP 405 (1035)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L--~~L~~L~l~~~~~~~~~ 405 (1035)
......+..+ .+|+.|+++++....++
T Consensus 168 ----------~~~~~~l~~l~~~~L~~L~l~~n~l~~~~ 196 (455)
T 3v47_A 168 ----------SICEEDLLNFQGKHFTLLRLSSITLQDMN 196 (455)
T ss_dssp ----------CCCTTTSGGGTTCEEEEEECTTCBCTTCS
T ss_pred ----------ccChhhhhccccccccccccccCcccccc
Confidence 2333344444 46777777776654443
No 31
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.91 E-value=1.3e-25 Score=263.36 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=141.9
Q ss_pred CCHHHHhhcCC--eeEeCCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHHH
Q 040774 1 RDRHVLESIGS--KTIGIDVLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKEA 78 (1035)
Q Consensus 1 R~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~~ 78 (1035)
|++.||..+++ .+|+|++|+++|||+||.++|+....++++++++++|+++|+|+||||+++|+.|+.+ + |+.+
T Consensus 273 R~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~ 348 (549)
T 2a5y_B 273 RDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM 348 (549)
T ss_dssp SBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH
T ss_pred CCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH
Confidence 78899998874 7899999999999999999996544457889999999999999999999999999876 3 5443
Q ss_pred HHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHh-----------cccccC-CCcccHHHHHHHHHHc--Cccc
Q 040774 79 LRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFL-----------QCSLMG-SPQASMQDLLKYAIGL--GILK 144 (1035)
Q Consensus 79 l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFl-----------y~s~Fp-~~~~~~~~Li~~w~a~--g~~~ 144 (1035)
+.+.. ..|.. ...+|++++++||++||.+ +|.||+ |||+|| ++.|+ +++|+|+ ||+.
T Consensus 349 -~~l~~-~l~~~--~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~ 419 (549)
T 2a5y_B 349 -AQLNN-KLESR--GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDIC 419 (549)
T ss_dssp -HHHHH-HHHHH--CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC---
T ss_pred -HHhHH-Hhhcc--cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceec
Confidence 33321 11111 1346889999999999998 999999 999999 89998 8999999 9996
Q ss_pred CC---CcHHHHHHHHHHHHHHHHHhccccccc--CcceeehhhhHHHHHHHHHcccc
Q 040774 145 GV---STVEEARDKVNALVDQLKDACLLLDGI--NSYWFSMHDVVSDVAISIASRDY 196 (1035)
Q Consensus 145 ~~---~~~~~~~~~~~~~~~~L~~~sl~~~~~--~~~~~~mHdl~~dla~~v~~~e~ 196 (1035)
.. .+.+++++ ||++|+++||++... ...+|+|||+|||+|+.++.+++
T Consensus 420 ~~~~~~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 420 SNEEEQLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ----CCCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred cCCCCCCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 42 34455444 799999999998753 34579999999999999988765
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.1e-23 Score=231.95 Aligned_cols=147 Identities=20% Similarity=0.324 Sum_probs=90.1
Q ss_pred CCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEec
Q 040774 234 CPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSL 313 (1035)
Q Consensus 234 ~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L 313 (1035)
+++|++|++.+ +....++. |..+++|++|++++|.+..+|. +..+++|++|++++|.++.++.++++++|++|++
T Consensus 43 l~~L~~L~l~~--~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 43 LESITKLVVAG--EKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HTTCSEEECCS--SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred cccccEEEEeC--Cccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 34555555554 33334433 4566667777777666666655 6666677777777766666666666777777777
Q ss_pred ccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 314 QASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 314 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
++|.+..+|. +..+++|++|++++|.....++. ++++++|++|++++|.+. ....+..+++|++
T Consensus 118 ~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------------~~~~~~~l~~L~~ 181 (347)
T 4fmz_A 118 NEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------------DVTPIANLTDLYS 181 (347)
T ss_dssp TTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------------CCGGGGGCTTCSE
T ss_pred cCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------------CchhhccCCCCCE
Confidence 7766666655 66667777777776654444433 666677777777666654 1112556666666
Q ss_pred EEEeecCC
Q 040774 394 LEINILDA 401 (1035)
Q Consensus 394 L~l~~~~~ 401 (1035)
|++++|..
T Consensus 182 L~l~~n~l 189 (347)
T 4fmz_A 182 LSLNYNQI 189 (347)
T ss_dssp EECTTSCC
T ss_pred EEccCCcc
Confidence 66665543
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5.9e-23 Score=232.11 Aligned_cols=153 Identities=12% Similarity=0.234 Sum_probs=124.9
Q ss_pred CCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCC
Q 040774 231 GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRK 307 (1035)
Q Consensus 231 ~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~ 307 (1035)
...+.+++.|++.+ +....+|..+|..+++|++|++++|.+..+| ..|..+++|++|++++|.++.+ ..++++++
T Consensus 41 ~~~l~~l~~l~l~~--~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 41 DITLNNQKIVTFKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp SGGGCCCSEEEEES--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccccCCceEEEecC--CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 44678888888886 6778888888888999999999999988875 4888999999999999988876 56888999
Q ss_pred CcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhc
Q 040774 308 LEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELK 386 (1035)
Q Consensus 308 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 386 (1035)
|++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. .. .++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~---~~~ 183 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLS 183 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS-----------BC---CGG
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC-----------cc---ccc
Confidence 99999999998888877 4889999999999887 77777766888899999999888876 11 355
Q ss_pred CCCCCCEEEEeecC
Q 040774 387 NLSRLTTLEINILD 400 (1035)
Q Consensus 387 ~L~~L~~L~l~~~~ 400 (1035)
.+++|+.|++++|.
T Consensus 184 ~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 184 LIPSLFHANVSYNL 197 (390)
T ss_dssp GCTTCSEEECCSSC
T ss_pred cccccceeeccccc
Confidence 66777887777654
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=3.7e-22 Score=221.90 Aligned_cols=169 Identities=21% Similarity=0.283 Sum_probs=146.8
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++++++.++.+..++....+++|++|++.+ +....++. |..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~--n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNG--NQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCS--SCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccC--Cccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 58899999999999988766899999999998 56677776 789999999999999999986 59999999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|.++.++.+.++++|++|++++|.....+..+..+++|++|++++|. +..++. ++++++|++|++++|.+.
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE----- 190 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC-----
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc-----
Confidence 999999977999999999999999544444459999999999999997 777766 889999999999999876
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCC
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAG 402 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 402 (1035)
.+..+..+++|+.|+++++...
T Consensus 191 --------~~~~~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 191 --------DISPLASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp --------CCGGGGGCTTCCEEECCSSCCC
T ss_pred --------ccccccCCCccceeecccCCCC
Confidence 2233888999999999887643
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=1.9e-22 Score=234.65 Aligned_cols=172 Identities=23% Similarity=0.337 Sum_probs=140.5
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
+.++..++.+..+|..+. ++++.|++.+ +....+++..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~~-~~l~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP-TETRLLDLGK--NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCCC-TTCSEEECCS--SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCCC-CCCcEEECCC--CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 466777777888887653 6889999987 667777777788999999999999998877 778999999999999999
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeec
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
.++.+ ..++++++|++|++++|.+..+ |..+..+++|++|++++|. +..+++..++++++|++|++++|.+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~---- 165 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT---- 165 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS----
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc----
Confidence 98877 4578899999999999988865 5568889999999999887 77777666888999999999998876
Q ss_pred cccccccccCHHhhcCCCCCCEEEEeecCCC
Q 040774 372 GLSIERSNASLVELKNLSRLTTLEINILDAG 402 (1035)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 402 (1035)
......+.++++|+.|++++|...
T Consensus 166 -------~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 166 -------SIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp -------SCCHHHHTTCTTCCEEEEESCCCC
T ss_pred -------ccChhHhcccCCCcEEeCCCCcCc
Confidence 344556888889999998887644
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=3.2e-22 Score=229.15 Aligned_cols=257 Identities=16% Similarity=0.161 Sum_probs=188.7
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
.+++++++++|.+..+|....+++|++|++++ +....+| |..+++|++|++++|.+..+| ++.+++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~--n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTS--NNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCS--SCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccC--CcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 57899999999998887655889999999997 5566665 688999999999999998885 8899999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|.++.++ ++++++|++|++++|.++.+| ++.+++|++|++++|..++.++ ++.+++|++|++++|.+.
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~----- 183 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKIT----- 183 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCC-----
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccc-----
Confidence 99988875 889999999999999998875 8889999999999997677763 778999999999999876
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCc
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGM 452 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l 452 (1035)
. . .++.+++|+.|++++|....++ +..+
T Consensus 184 ------~-l--~l~~l~~L~~L~l~~N~l~~~~-------------------------------------------l~~l 211 (457)
T 3bz5_A 184 ------E-L--DVSQNKLLNRLNCDTNNITKLD-------------------------------------------LNQN 211 (457)
T ss_dssp ------C-C--CCTTCTTCCEEECCSSCCSCCC-------------------------------------------CTTC
T ss_pred ------e-e--ccccCCCCCEEECcCCcCCeec-------------------------------------------cccC
Confidence 2 1 1778889999999888755431 3344
Q ss_pred cccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCC
Q 040774 453 KNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAES 532 (1035)
Q Consensus 453 ~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 532 (1035)
++|+.|+++++.-. . +| + ..+++|++|+++++. +..+ ..+.+++|+.|.+.+
T Consensus 212 ~~L~~L~Ls~N~l~-~-ip-~--~~l~~L~~L~l~~N~-l~~~------~~~~l~~L~~L~l~~---------------- 263 (457)
T 3bz5_A 212 IQLTFLDCSSNKLT-E-ID-V--TPLTQLTYFDCSVNP-LTEL------DVSTLSKLTTLHCIQ---------------- 263 (457)
T ss_dssp TTCSEEECCSSCCS-C-CC-C--TTCTTCSEEECCSSC-CSCC------CCTTCTTCCEEECTT----------------
T ss_pred CCCCEEECcCCccc-c-cC-c--cccCCCCEEEeeCCc-CCCc------CHHHCCCCCEEeccC----------------
Confidence 67777787775432 2 23 2 567888888888876 2221 244566666665443
Q ss_pred CCCcceEEEeecCCCcccCChhhhhcCCCCceEEecccCc
Q 040774 533 FCNLKTIKVGSCHKLKNLFSFSIAKFLPNLKELKTTSTVE 572 (1035)
Q Consensus 533 l~~L~~L~l~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 572 (1035)
.+|+.|++++|..+..++ ...+++|+.|++++|..
T Consensus 264 -n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 264 -TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp -CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTT
T ss_pred -CCCCEEECCCCccCCccc----ccccccCCEEECCCCcc
Confidence 134444455544444433 23455666666666653
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.6e-22 Score=234.08 Aligned_cols=378 Identities=18% Similarity=0.168 Sum_probs=243.3
Q ss_pred eeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCC-Cc--ccccCCCCCcEEecc
Q 040774 239 FFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLE-DI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 239 ~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~-~l--~~i~~L~~L~~L~L~ 314 (1035)
.++..+ .....+|. + .++|++|++++|.+..+ |..|+++++|++|++++|.+. .+ ..|+++++|++|+++
T Consensus 14 ~~~c~~--~~l~~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 14 NAICIN--RGLHQVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp EEECCS--SCCSSCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccCcCC--CCcccCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 344443 56777876 2 48999999999999987 788999999999999999986 33 679999999999999
Q ss_pred cCcCCcc-hHhhccCCcCCEEcccCCccccc-c-ChhhhcCCCCCcEEEccCCccceeeccccccccccCHHh-hcCCCC
Q 040774 315 ASAIEQL-PMEIGQLTQLKLLDLSNCSKLKV-I-APNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVE-LKNLSR 390 (1035)
Q Consensus 315 ~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~-l-p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~ 390 (1035)
+|.+..+ |..++++++|++|++++|. ++. + +...++++++|++|++++|.+. ...+.. ++++++
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~-----------~~~~~~~~~~l~~ 155 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIK-----------KIQPASFFLNMRR 155 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCC-----------SCCCCGGGGGCTT
T ss_pred CCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccC-----------ccCcccccCCCCc
Confidence 9999966 7789999999999999998 654 2 2233889999999999999987 233333 789999
Q ss_pred CCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCc--cccceeecccccCccc
Q 040774 391 LTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGM--KNVEYLCLDELPGLTN 468 (1035)
Q Consensus 391 L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l--~~L~~L~L~~~~~~~~ 468 (1035)
|++|++++|.....+... +..+ .+++.|+++++....
T Consensus 156 L~~L~L~~n~l~~~~~~~----------------------------------------l~~l~~~~L~~L~l~~n~l~~- 194 (455)
T 3v47_A 156 FHVLDLTFNKVKSICEED----------------------------------------LLNFQGKHFTLLRLSSITLQD- 194 (455)
T ss_dssp CCEEECTTCCBSCCCTTT----------------------------------------SGGGTTCEEEEEECTTCBCTT-
T ss_pred ccEEeCCCCcccccChhh----------------------------------------hhccccccccccccccCcccc-
Confidence 999999998855443321 1111 466677777654321
Q ss_pred ccccc-C------ccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEE
Q 040774 469 VLHDL-D------GEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKV 541 (1035)
Q Consensus 469 ~l~~l-~------~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l 541 (1035)
..+.. . ...+++|++|+++++.-....... .......++|+.|.+.++...... .....++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~----- 264 (455)
T 3v47_A 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR-FFDAIAGTKIQSLILSNSYNMGSS----FGHTNFKDP----- 264 (455)
T ss_dssp CSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH-HHHHTTTCCEEEEECTTCTTTSCC----TTCCSSCCC-----
T ss_pred cchhhccccccccccccceeeeEecCCCcccccchhh-hhccccccceeeEeeccccccccc----cchhhhccC-----
Confidence 11110 0 123467888888887622111100 001122367777777765432211 001111110
Q ss_pred eecCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCcc
Q 040774 542 GSCHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLS 621 (1035)
Q Consensus 542 ~~c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~ 621 (1035)
..... ..-..++|++|++++|...... ... ...+++|+.|++++|.+..+....+.
T Consensus 265 ------~~~~~--~~~~~~~L~~L~l~~n~l~~~~---~~~-------------~~~l~~L~~L~Ls~n~l~~~~~~~~~ 320 (455)
T 3v47_A 265 ------DNFTF--KGLEASGVKTCDLSKSKIFALL---KSV-------------FSHFTDLEQLTLAQNEINKIDDNAFW 320 (455)
T ss_dssp ------CTTTT--GGGTTSCCCEEECCSSCCCEEC---TTT-------------TTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ------ccccc--ccccccCceEEEecCccccccc---hhh-------------cccCCCCCEEECCCCcccccChhHhc
Confidence 00000 0012367788888777653210 111 12267888888888877665433332
Q ss_pred ccccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCccc
Q 040774 622 AAISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELR 701 (1035)
Q Consensus 622 ~~~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 701 (1035)
.+++|+.|++++| .++.+++. .+..+++|++|++++|. +..+. +.....+++|++|+++++ +++
T Consensus 321 -----~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~ 384 (455)
T 3v47_A 321 -----GLTHLLKLNLSQN-FLGSIDSR-MFENLDKLEVLDLSYNH-IRALG-------DQSFLGLPNLKELALDTN-QLK 384 (455)
T ss_dssp -----TCTTCCEEECCSS-CCCEECGG-GGTTCTTCCEEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCS
T ss_pred -----CcccCCEEECCCC-ccCCcChh-HhcCcccCCEEECCCCc-ccccC-------hhhccccccccEEECCCC-ccc
Confidence 5678888888888 56665443 34778888888888875 33221 123345788888888884 566
Q ss_pred ccccCCcccCCCCcceeeeecCCcc
Q 040774 702 AFYPGVHTLECPMLTKLEVYICDKL 726 (1035)
Q Consensus 702 ~~~~~~~~~~~~~L~~L~i~~c~~l 726 (1035)
.++.... ..+++|++|++++++--
T Consensus 385 ~~~~~~~-~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 385 SVPDGIF-DRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred cCCHhHh-ccCCcccEEEccCCCcc
Confidence 6665432 34788999999887643
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.7e-22 Score=232.32 Aligned_cols=314 Identities=16% Similarity=0.212 Sum_probs=207.5
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+.++..+ .....+|..+ .+++++|++++|.+..+ |..|.++++|++|+|++|.++.+ ..|+++++|++|+++
T Consensus 14 ~~v~c~~--~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHR--KRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCS--CCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCC--CCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 4556554 6677888765 46899999999999987 56899999999999999998866 789999999999999
Q ss_pred cCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 315 ASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
+|.++.+|.. +.++++|++|++++|. +..+++..++++++|++|++++|.+. ......+..+++|+.
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLV-----------YISHRAFSGLNSLEQ 156 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCC-----------EECTTSSTTCTTCCE
T ss_pred CCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccc-----------eeChhhccCCCCCCE
Confidence 9999988875 6899999999999998 77776666899999999999999886 344556788899999
Q ss_pred EEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeecccccCcccccccc
Q 040774 394 LEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVLHDL 473 (1035)
Q Consensus 394 L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l~~l 473 (1035)
|++++|....++... +.
T Consensus 157 L~l~~n~l~~~~~~~----------------------------------------l~----------------------- 173 (477)
T 2id5_A 157 LTLEKCNLTSIPTEA----------------------------------------LS----------------------- 173 (477)
T ss_dssp EEEESCCCSSCCHHH----------------------------------------HT-----------------------
T ss_pred EECCCCcCcccChhH----------------------------------------hc-----------------------
Confidence 999988755444321 22
Q ss_pred CccccCCccEEEeecCCccceeccCCccccCcCcccceeecccccccccccccccccCCCCCcceEEEeecCCCcccCCh
Q 040774 474 DGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFSF 553 (1035)
Q Consensus 474 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~~ 553 (1035)
.+++|+.|+++++. +..+. ......+++|+.|++.++..+..+... .....+|+.|++.+| .++.++.
T Consensus 174 ---~l~~L~~L~l~~n~-i~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n-~l~~~~~- 241 (477)
T 2id5_A 174 ---HLHGLIVLRLRHLN-INAIR---DYSFKRLYRLKVLEISHWPYLDTMTPN---CLYGLNLTSLSITHC-NLTAVPY- 241 (477)
T ss_dssp ---TCTTCCEEEEESCC-CCEEC---TTCSCSCTTCCEEEEECCTTCCEECTT---TTTTCCCSEEEEESS-CCCSCCH-
T ss_pred ---ccCCCcEEeCCCCc-CcEeC---hhhcccCcccceeeCCCCccccccCcc---cccCccccEEECcCC-cccccCH-
Confidence 24444555554443 11111 112334445555555544443333211 112336777777765 3444432
Q ss_pred hhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCccccccccCCcccE
Q 040774 554 SIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAISCSVQNLTR 633 (1035)
Q Consensus 554 ~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~~ 633 (1035)
..+..+++|++|++++|....... . ....+++|+.|++++|.+..+....+. .+++|+.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~---~-------------~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~ 300 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEG---S-------------MLHELLRLQEIQLVGGQLAVVEPYAFR-----GLNYLRV 300 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECT---T-------------SCTTCTTCCEEECCSSCCSEECTTTBT-----TCTTCCE
T ss_pred HHhcCccccCeeECCCCcCCccCh---h-------------hccccccCCEEECCCCccceECHHHhc-----CcccCCE
Confidence 234567777777777776421100 0 112256777777777766655433332 4566777
Q ss_pred EEEccCCCcccccChhHHhhcCCCcEEEEeccc
Q 040774 634 LILEDCRKLKYVFSYSIAKRLGQLQHLEICRCP 666 (1035)
Q Consensus 634 L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 666 (1035)
|++++| .++.+++. .+..+++|+.|++++++
T Consensus 301 L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 301 LNVSGN-QLTTLEES-VFHSVGNLETLILDSNP 331 (477)
T ss_dssp EECCSS-CCSCCCGG-GBSCGGGCCEEECCSSC
T ss_pred EECCCC-cCceeCHh-HcCCCcccCEEEccCCC
Confidence 777777 56554432 33556677777776665
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.1e-22 Score=238.87 Aligned_cols=153 Identities=12% Similarity=0.234 Sum_probs=127.1
Q ss_pred CCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCC
Q 040774 231 GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRK 307 (1035)
Q Consensus 231 ~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~ 307 (1035)
.+.+.+++.+++.+ +....+|+.+|..+++|++|++++|.+..+| ..|+.+++|++|+|++|.++.+ ..|+++++
T Consensus 47 ~l~l~~l~~l~l~~--~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 47 DITLNNQKIVTFKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp SGGGCCCSEEEESS--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cccCCCceEEEeeC--CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 44677888898886 7778889988899999999999999998875 4889999999999999998876 56789999
Q ss_pred CcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhc
Q 040774 308 LEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELK 386 (1035)
Q Consensus 308 L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~ 386 (1035)
|++|++++|.++.+|.. ++++++|++|++++|. +..+++..++++++|++|++++|.+. .. .++
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~---~~~ 189 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT-----------HV---DLS 189 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS-----------BC---CGG
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC-----------Cc---Chh
Confidence 99999999999988877 4889999999999987 77777766889999999999998876 11 255
Q ss_pred CCCCCCEEEEeecC
Q 040774 387 NLSRLTTLEINILD 400 (1035)
Q Consensus 387 ~L~~L~~L~l~~~~ 400 (1035)
.+++|+.|++++|.
T Consensus 190 ~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 190 LIPSLFHANVSYNL 203 (597)
T ss_dssp GCTTCSEEECCSSC
T ss_pred hhhhhhhhhcccCc
Confidence 67778888877664
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=7.2e-22 Score=223.17 Aligned_cols=167 Identities=17% Similarity=0.177 Sum_probs=143.7
Q ss_pred CCccEEEecCCCCCCCCCCC--CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQGW--ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L 289 (1035)
..++++++.++.+..+|... .+++|++|++.+ +....+++..|..+++|++|++++|.+..+ |..++++++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCC--CcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 68999999999999998764 789999999997 667788887889999999999999999988 4568999999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCcch-HhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQLP-MEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
++++|.++.+ ..++++++|++|++++|.++.++ ..++.+++|++|++++|. ++.++ ++.+++|++|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc
Confidence 9999999987 34799999999999999999775 458999999999999997 77775 56789999999999887
Q ss_pred ceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 367 EWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
. .+...++|+.|++++|..
T Consensus 199 ~----------------~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 199 S----------------TLAIPIAVEELDASHNSI 217 (390)
T ss_dssp S----------------EEECCSSCSEEECCSSCC
T ss_pred c----------------ccCCCCcceEEECCCCee
Confidence 6 233445788888877653
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=4.2e-21 Score=229.07 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=143.8
Q ss_pred CCccEEEecCCCCCCCCCCC--CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQGW--ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L 289 (1035)
..++.+++.++.+..+|... .+++|++|++.+ +....+++..|..+++|++|+|++|.+..+|. .|+++++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND--LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCC--CCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 67899999999999988764 789999999997 66777888788999999999999999998854 67999999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
+|++|.++.+ ..++++++|++|++++|.+..+|. .++.+++|++|++++|. ++.++ ++.+++|++|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc
Confidence 9999999987 347999999999999999997754 69999999999999997 77775 56789999999999987
Q ss_pred ceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 367 EWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
. .+....+|+.|++++|.+
T Consensus 205 ~----------------~l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 205 S----------------TLAIPIAVEELDASHNSI 223 (597)
T ss_dssp S----------------EEECCTTCSEEECCSSCC
T ss_pred c----------------cccCCchhheeeccCCcc
Confidence 6 234456788888877754
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=2.9e-20 Score=204.76 Aligned_cols=152 Identities=20% Similarity=0.297 Sum_probs=107.5
Q ss_pred CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEe
Q 040774 236 QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILS 312 (1035)
Q Consensus 236 ~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~ 312 (1035)
+++.+++.+ +....+|..+ .++|++|++++|.+..+ |..|.++++|++|++++|.++.+ ..++++++|++|+
T Consensus 34 ~l~~l~~~~--~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSD--LGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCS--SCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCC--CCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 577777775 4556777654 35778888888888776 44778888888888888887765 6678888888888
Q ss_pred cccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCC
Q 040774 313 LQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392 (1035)
Q Consensus 313 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (1035)
+++|.++.+|..+. ++|++|++++|. ++.+|+..++++++|++|++++|.+.. .+..+..+..+ +|+
T Consensus 109 L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLEN---------SGFEPGAFDGL-KLN 175 (332)
T ss_dssp CCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBG---------GGSCTTSSCSC-CCS
T ss_pred CCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCcccc---------CCCCcccccCC-ccC
Confidence 88888887777655 788888888876 777777667788888888888877641 01233445555 666
Q ss_pred EEEEeecCCCCCC
Q 040774 393 TLEINILDAGILP 405 (1035)
Q Consensus 393 ~L~l~~~~~~~~~ 405 (1035)
.|++++|....+|
T Consensus 176 ~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 176 YLRISEAKLTGIP 188 (332)
T ss_dssp CCBCCSSBCSSCC
T ss_pred EEECcCCCCCccC
Confidence 7776666544433
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.3e-19 Score=199.54 Aligned_cols=153 Identities=18% Similarity=0.298 Sum_probs=105.5
Q ss_pred CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEe
Q 040774 236 QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILS 312 (1035)
Q Consensus 236 ~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~ 312 (1035)
+++.+++.+ .....+|..+ .+.|++|++++|.++.+|. .|+++++|++|++++|.++.+ ..++++++|++|+
T Consensus 32 ~l~~l~~~~--~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSD--LGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTT--SCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecC--CCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 566666654 4455566543 3567777887777777754 677777788888877777765 5677777888888
Q ss_pred cccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCC
Q 040774 313 LQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392 (1035)
Q Consensus 313 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (1035)
+++|.++.+|..+. ++|++|++++|. ++.+++..++++++|++|++++|.+.. .+.....+..+++|+
T Consensus 107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---------~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 107 LSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKS---------SGIENGAFQGMKKLS 174 (330)
T ss_dssp CCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCG---------GGBCTTGGGGCTTCC
T ss_pred CCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCc---------cCcChhhccCCCCcC
Confidence 88777777776654 678888888776 777777667778888888887777640 013345567777777
Q ss_pred EEEEeecCCCCCC
Q 040774 393 TLEINILDAGILP 405 (1035)
Q Consensus 393 ~L~l~~~~~~~~~ 405 (1035)
.|++++|....+|
T Consensus 175 ~L~l~~n~l~~l~ 187 (330)
T 1xku_A 175 YIRIADTNITTIP 187 (330)
T ss_dssp EEECCSSCCCSCC
T ss_pred EEECCCCccccCC
Confidence 7777776654443
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=2.4e-19 Score=197.33 Aligned_cols=171 Identities=19% Similarity=0.284 Sum_probs=127.7
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~ 292 (1035)
.++.++++++.+..+|..+. +++++|++.+ +....++...|.++++|++|++++|.+..+ |..|+++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP-PDTALLDLQN--NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC-TTCCEEECCS--SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccCC-CCCeEEECCC--CcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56778888888887776553 6788888887 567777777778888888888888888877 7788888888888888
Q ss_pred CCCCCCc-ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccc--cChhhhcCCCCCcEEEccCCccce
Q 040774 293 SCQLEDI-RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKV--IAPNVLSNLSQLEELYMANCSIEW 368 (1035)
Q Consensus 293 ~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~ 368 (1035)
+|.++.+ ..+. ++|++|++++|.++.++. .+.++++|++|++++|. +.. +.+..++++++|++|++++|.+.
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccc-
Confidence 8888766 3333 688888888888887655 47888888888888886 432 33444788888888888888775
Q ss_pred eeccccccccccCHHhhcCCCCCCEEEEeecCCCCC
Q 040774 369 EVLGLSIERSNASLVELKNLSRLTTLEINILDAGIL 404 (1035)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 404 (1035)
..+..+ .++|++|++++|....+
T Consensus 185 -----------~l~~~~--~~~L~~L~l~~n~l~~~ 207 (330)
T 1xku_A 185 -----------TIPQGL--PPSLTELHLDGNKITKV 207 (330)
T ss_dssp -----------SCCSSC--CTTCSEEECTTSCCCEE
T ss_pred -----------cCCccc--cccCCEEECCCCcCCcc
Confidence 111222 26788888887765433
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=8.4e-20 Score=201.12 Aligned_cols=235 Identities=15% Similarity=0.226 Sum_probs=168.7
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~ 292 (1035)
.++.++++++.+..+|..+ .+++++|++.+ +....+++..|.++++|++|++++|.+..+ |..|+++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQN--NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCC--CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5678888888888888765 37899999987 566777777788999999999999999877 7789999999999999
Q ss_pred CCCCCCc-ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccc--cChhhhcCCCCCcEEEccCCccce
Q 040774 293 SCQLEDI-RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKV--IAPNVLSNLSQLEELYMANCSIEW 368 (1035)
Q Consensus 293 ~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~ 368 (1035)
+|.++.+ ..+. ++|++|++++|.++.+|.. +..+++|++|++++|. ++. +++..++.+ +|++|++++|.+.
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 9998877 4444 7899999999999888765 7889999999999987 542 444447777 8999999998876
Q ss_pred eeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeecc
Q 040774 369 EVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGE 448 (1035)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~ 448 (1035)
..+..+. ++|++|++++|....++...
T Consensus 186 -----------~l~~~~~--~~L~~L~l~~n~i~~~~~~~---------------------------------------- 212 (332)
T 2ft3_A 186 -----------GIPKDLP--ETLNELHLDHNKIQAIELED---------------------------------------- 212 (332)
T ss_dssp -----------SCCSSSC--SSCSCCBCCSSCCCCCCTTS----------------------------------------
T ss_pred -----------ccCcccc--CCCCEEECCCCcCCccCHHH----------------------------------------
Confidence 1222222 67888888888765544321
Q ss_pred ccCccccceeecccccCcccccc-ccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccc
Q 040774 449 WRGMKNVEYLCLDELPGLTNVLH-DLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSL 517 (1035)
Q Consensus 449 ~~~l~~L~~L~L~~~~~~~~~l~-~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 517 (1035)
+.++++|+.|+++++.- ....+ .+ ..+++|++|+++++. +..++ .....+++|+.|++.++
T Consensus 213 l~~l~~L~~L~L~~N~l-~~~~~~~~--~~l~~L~~L~L~~N~-l~~lp----~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 213 LLRYSKLYRLGLGHNQI-RMIENGSL--SFLPTLRELHLDNNK-LSRVP----AGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp STTCTTCSCCBCCSSCC-CCCCTTGG--GGCTTCCEEECCSSC-CCBCC----TTGGGCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcC-CcCChhHh--hCCCCCCEEECCCCc-CeecC----hhhhcCccCCEEECCCC
Confidence 44456677777776532 22222 22 456778888887775 22222 13455666777776663
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=4e-20 Score=202.33 Aligned_cols=131 Identities=23% Similarity=0.403 Sum_probs=93.3
Q ss_pred CCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccC
Q 040774 260 MPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSN 338 (1035)
Q Consensus 260 ~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~ 338 (1035)
..++++|++++|.+..+|..++++++|++|++++|.++.+ ..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 4667777777777777777777777777777777777765 567777777777777777777777777777788888777
Q ss_pred CccccccChhhhc---------CCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCC
Q 040774 339 CSKLKVIAPNVLS---------NLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGI 403 (1035)
Q Consensus 339 ~~~l~~lp~~~l~---------~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 403 (1035)
|.....+|.. ++ ++++|++|++++|.+. ..+..++++++|++|++++|....
T Consensus 160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIR------------SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCC------------CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcC------------cchHhhcCCCCCCEEEccCCCCCc
Confidence 7666667665 43 3677777777776654 334456667777777777665443
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=5.3e-20 Score=201.41 Aligned_cols=172 Identities=24% Similarity=0.368 Sum_probs=144.3
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEc
Q 040774 213 KKCSRISLYDNNISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 291 (1035)
.+++.+++++|.+..+|..+ .+++|++|++.+ +....+|.. |.++++|++|++++|.+..+|..++++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~--n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDA--AGLMELPDT-MQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEES--SCCCCCCSC-GGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCC--CCccchhHH-HhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 57889999999999888765 789999999997 445578765 47899999999999999999999999999999999
Q ss_pred CCCCCC-Cc-ccc---------cCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEE
Q 040774 292 DSCQLE-DI-RVI---------GELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELY 360 (1035)
Q Consensus 292 ~~~~l~-~l-~~i---------~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 360 (1035)
++|.+. .+ ..+ +++++|++|++++|.++.+|..++++++|++|++++|. +..+|+. ++++++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEE
Confidence 997643 33 343 45999999999999999999999999999999999987 7888887 88999999999
Q ss_pred ccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecC
Q 040774 361 MANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILD 400 (1035)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 400 (1035)
+++|.+. +..+..++.+++|+.|++++|.
T Consensus 236 Ls~n~~~-----------~~~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 236 LRGCTAL-----------RNYPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp CTTCTTC-----------CBCCCCTTCCCCCCEEECTTCT
T ss_pred CcCCcch-----------hhhHHHhcCCCCCCEEECCCCC
Confidence 9998876 4455667888888888888765
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=9.7e-21 Score=227.24 Aligned_cols=223 Identities=17% Similarity=0.131 Sum_probs=105.5
Q ss_pred cccCCccEEEeecCCccceeccCC-cc----------ccCcCcccceeecccccccccccccccccCCCCC-cceEEEee
Q 040774 476 EGFAELKHLNVQNNSNFLCIVDPL-QV----------RCGAFPMLESVVLQSLINLERICHGQLRAESFCN-LKTIKVGS 543 (1035)
Q Consensus 476 ~~l~~L~~L~l~~~~~l~~~~~~~-~~----------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~-L~~L~l~~ 543 (1035)
..+++|++|++++|+.+....-.+ .+ ....+++|++|+++++. +.......+. ..++. |++|++.+
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~-~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLA-KARADDLETLKLDK 147 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHH-HHHGGGCCEEEEES
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHH-HhccccCcEEECcC
Confidence 457889999999987543221100 00 01156777777777652 2211000000 11334 77777777
Q ss_pred cCCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCcccc
Q 040774 544 CHKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAA 623 (1035)
Q Consensus 544 c~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~ 623 (1035)
|..+...........+++|++|++++|.....+..+++.+ ...+++|++|+++++.+..+...... .
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~------------~~~~~~L~~L~L~~n~~~~~~~~~l~-~ 214 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL------------AQHNTSLEVLNFYMTEFAKISPKDLE-T 214 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH------------HHHCCCCCEEECTTCCCSSCCHHHHH-H
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH------------HhcCCCccEEEeeccCCCccCHHHHH-H
Confidence 7643222111223466777777777775422211111111 01256777777776655422111110 1
Q ss_pred ccccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEeccccccccccccccccCCCceeccccCeeecccCCccccc
Q 040774 624 ISCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRCPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAF 703 (1035)
Q Consensus 624 ~p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~ 703 (1035)
+...+++|+.|++.+| .+..++ ..+..+++|++|.++++...... .........+++|+.|.++++. ...+
T Consensus 215 ~~~~~~~L~~L~L~~~-~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~-~~~l 285 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDF-EILELV--GFFKAAANLEEFCGGSLNEDIGM-----PEKYMNLVFPRKLCRLGLSYMG-PNEM 285 (592)
T ss_dssp HHHHCTTCCEEECSSC-BGGGGH--HHHHHCTTCCEEEECBCCCCTTC-----TTSSSCCCCCTTCCEEEETTCC-TTTG
T ss_pred HHhhCCCCcEEeccCc-cHHHHH--HHHhhhhHHHhhcccccccccch-----HHHHHHhhccccccccCccccc-hhHH
Confidence 1124566777777776 344432 33566777777777653221100 1111122344566666665531 1111
Q ss_pred ccCCcccCCCCcceeeeecCC
Q 040774 704 YPGVHTLECPMLTKLEVYICD 724 (1035)
Q Consensus 704 ~~~~~~~~~~~L~~L~i~~c~ 724 (1035)
+. ....+++|++|++++|.
T Consensus 286 ~~--~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 286 PI--LFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp GG--GGGGGGGCCEEEETTCC
T ss_pred HH--HHhhcCCCcEEecCCCc
Confidence 11 11224566666666665
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=4.8e-20 Score=200.56 Aligned_cols=243 Identities=19% Similarity=0.212 Sum_probs=175.0
Q ss_pred CCccEEEecCCCCC---CCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-cCcccccCCCCCc
Q 040774 213 KKCSRISLYDNNIS---EIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-SLPSSIHLLTDLR 287 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~---~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr 287 (1035)
.++++++++++.+. .+|..+ .+++|++|++.+.+...+.+|.. |.++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 47889999998887 466655 78889999888424555566665 578899999999999887 6788888899999
Q ss_pred EEEcCCCCCCC-c-ccccCCCCCcEEecccCcCC-cchHhhccCC-cCCEEcccCCcccc-ccChhhhcCCCCCcEEEcc
Q 040774 288 TLCLDSCQLED-I-RVIGELRKLEILSLQASAIE-QLPMEIGQLT-QLKLLDLSNCSKLK-VIAPNVLSNLSQLEELYMA 362 (1035)
Q Consensus 288 ~L~L~~~~l~~-l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~l~-~lp~~~l~~L~~L~~L~l~ 362 (1035)
+|++++|.++. + ..++++++|++|++++|.++ .+|..++.+. +|++|++++|. +. .+|.. ++.+. |++|+++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~-~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT-FANLN-LAFVDLS 205 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG-GGGCC-CSEEECC
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH-HhCCc-ccEEECc
Confidence 99999988873 3 77888899999999998888 7888888887 88999999887 54 55554 78887 9999998
Q ss_pred CCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCC
Q 040774 363 NCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNS 442 (1035)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~ 442 (1035)
+|.+. ...+..+..+++|+.|++++|.....+..
T Consensus 206 ~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------------------------------- 239 (313)
T 1ogq_A 206 RNMLE-----------GDASVLFGSDKNTQKIHLAKNSLAFDLGK----------------------------------- 239 (313)
T ss_dssp SSEEE-----------ECCGGGCCTTSCCSEEECCSSEECCBGGG-----------------------------------
T ss_pred CCccc-----------CcCCHHHhcCCCCCEEECCCCceeeecCc-----------------------------------
Confidence 88876 44566778888888888888764322111
Q ss_pred ceeeccccCccccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeeccccc
Q 040774 443 RICLGEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLI 518 (1035)
Q Consensus 443 ~i~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 518 (1035)
+..+++|++|+++++.-.......+ ..+++|++|+++++.-...++ ....+++|+.+.+.+.+
T Consensus 240 ------~~~l~~L~~L~Ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip-----~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 ------VGLSKNLNGLDLRNNRIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIP-----QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp ------CCCCTTCCEEECCSSCCEECCCGGG--GGCTTCCEEECCSSEEEEECC-----CSTTGGGSCGGGTCSSS
T ss_pred ------ccccCCCCEEECcCCcccCcCChHH--hcCcCCCEEECcCCcccccCC-----CCccccccChHHhcCCC
Confidence 2334667777777655332333333 457778888887776221221 22556677777766654
No 50
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=7.1e-19 Score=201.74 Aligned_cols=175 Identities=25% Similarity=0.373 Sum_probs=145.2
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~ 292 (1035)
..+.++..+..+..+|..+. ++++.|++.+ +....++...|.++++|++|+|++|.+..++ ..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~--n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHE--NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCS--CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccC--CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34567777788888887664 7889999987 6677777777899999999999999998874 678899999999999
Q ss_pred CCCCCCc--ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcccee
Q 040774 293 SCQLEDI--RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWE 369 (1035)
Q Consensus 293 ~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 369 (1035)
+|.++.+ ..+.++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--
Confidence 9998877 468899999999999999998876 58889999999999987788888877889999999999999876
Q ss_pred eccccccccccCHHhhcCCCCCCEEEEeecCCCCC
Q 040774 370 VLGLSIERSNASLVELKNLSRLTTLEINILDAGIL 404 (1035)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 404 (1035)
.+..+..+++|+.|++++|.+..+
T Consensus 199 -----------~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 199 -----------EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp -----------SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred -----------cccccCCCcccCEEECCCCccCcc
Confidence 223577888899999988875544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=3.6e-19 Score=193.70 Aligned_cols=173 Identities=23% Similarity=0.218 Sum_probs=123.5
Q ss_pred EEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC---cccccCCCCCcEEEcCC
Q 040774 217 RISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL---PSSIHLLTDLRTLCLDS 293 (1035)
Q Consensus 217 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l---p~~i~~L~~Lr~L~L~~ 293 (1035)
.++..++.+..+|..+. +++++|++.+ +....+|..+|.++++|++|++++|.+..+ |..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~--n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP-SSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCCC-TTCCEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCCC-CCCCEEECCC--CccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 46666666777776543 5778888876 556677777777888888888888877754 56667778888888888
Q ss_pred CCCCCc-ccccCCCCCcEEecccCcCCcchH--hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceee
Q 040774 294 CQLEDI-RVIGELRKLEILSLQASAIEQLPM--EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEV 370 (1035)
Q Consensus 294 ~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 370 (1035)
|.+..+ ..+.++++|++|++++|.++.+|. .+..+++|++|++++|. +...++..++++++|++|++++|.+..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc--
Confidence 877766 567778888888888887777664 57778888888888876 555555557778888888888877651
Q ss_pred ccccccccccCHHhhcCCCCCCEEEEeecCCCC
Q 040774 371 LGLSIERSNASLVELKNLSRLTTLEINILDAGI 403 (1035)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 403 (1035)
...+..+..+++|++|++++|....
T Consensus 165 --------~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 165 --------NFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp --------GEECSCCTTCTTCCEEECTTSCCCE
T ss_pred --------ccchhHHhhCcCCCEEECCCCCcCC
Confidence 0233456677777777777776443
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=7.4e-19 Score=202.37 Aligned_cols=175 Identities=26% Similarity=0.337 Sum_probs=143.7
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~ 292 (1035)
..+.++..+..+..+|..+. +++++|++++ +....+++..|.++++|++|+|++|.+..+ |..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~--n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLME--NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC-TTCSEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCCC-CCccEEECcC--CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34567777777888887654 6889999987 667777777788999999999999999877 4688899999999999
Q ss_pred CCCCCCc--ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcccee
Q 040774 293 SCQLEDI--RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWE 369 (1035)
Q Consensus 293 ~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 369 (1035)
+|.++.+ ..++++++|++|++++|.++.+|. .+.++++|++|++++|..+..++...+.++++|++|++++|.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-- 209 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-- 209 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS--
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc--
Confidence 9998876 558889999999999999998876 47889999999999987788888877889999999999999876
Q ss_pred eccccccccccCHHhhcCCCCCCEEEEeecCCCCC
Q 040774 370 VLGLSIERSNASLVELKNLSRLTTLEINILDAGIL 404 (1035)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 404 (1035)
.+..+..+++|+.|++++|.+..+
T Consensus 210 -----------~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 210 -----------DMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp -----------SCCCCTTCTTCCEEECTTSCCSEE
T ss_pred -----------ccccccccccccEEECcCCcCccc
Confidence 123577888899999888875544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=200.58 Aligned_cols=175 Identities=19% Similarity=0.226 Sum_probs=135.3
Q ss_pred EEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCC
Q 040774 217 RISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQ 295 (1035)
Q Consensus 217 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~ 295 (1035)
..+.+++.+..+|..+. ++|++|++++ +....++...|.++++|++|++++|.+..+ |..|+++++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~~-~~L~~L~l~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGLT-EAVKSLDLSN--NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTCC-TTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCccccccccc-ccCcEEECCC--CcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 36677778888877553 5788888886 556677777778888888888888888876 4568888888888888888
Q ss_pred CCCc--ccccCCCCCcEEecccCcCCcchH--hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeec
Q 040774 296 LEDI--RVIGELRKLEILSLQASAIEQLPM--EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 296 l~~l--~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
++.+ ..++++++|++|++++|.++.+|. .++.+++|++|++++|..++.+++..++++++|++|++++|.+.
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~---- 187 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ---- 187 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC----
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC----
Confidence 8876 347888888888888888888876 57888888888888885577777666888888888888888776
Q ss_pred cccccccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 372 GLSIERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
...+..++.+++|++|++++|....++
T Consensus 188 -------~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 188 -------SYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp -------EECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred -------ccCHHHHhccccCCeecCCCCccccch
Confidence 334566777888888888877654433
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.79 E-value=3.8e-20 Score=222.04 Aligned_cols=127 Identities=21% Similarity=0.292 Sum_probs=57.8
Q ss_pred CCCCccEEEccCCcCcc-CcccccCC--CCCcEEEcCCCC-CC--Cc-ccccCCCCCcEEecccCcCCc-----chHhhc
Q 040774 259 GMPKLKVLDFTRMRLLS-LPSSIHLL--TDLRTLCLDSCQ-LE--DI-RVIGELRKLEILSLQASAIEQ-----LPMEIG 326 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~~-lp~~i~~L--~~Lr~L~L~~~~-l~--~l-~~i~~L~~L~~L~L~~~~l~~-----lp~~i~ 326 (1035)
.+++|++|+|++|.++. .+..+..+ .+|++|++++|. +. .+ ..+.++++|++|++++|.+.. ++....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 45555555555554442 12233332 235555555554 11 11 222345555555555554331 233344
Q ss_pred cCCcCCEEcccCCccccccCh----hhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEee
Q 040774 327 QLTQLKLLDLSNCSKLKVIAP----NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINI 398 (1035)
Q Consensus 327 ~L~~L~~L~l~~~~~l~~lp~----~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~ 398 (1035)
.+++|++|++++|. +..+.. ..+.++++|++|++++|.+. ..+..+..+++|++|+++.
T Consensus 190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~------------~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEIL------------ELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGG------------GGHHHHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHH------------HHHHHHhhhhHHHhhcccc
Confidence 55555555555554 321111 11344555555555555443 2334455555555555543
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=2.9e-19 Score=194.44 Aligned_cols=220 Identities=18% Similarity=0.205 Sum_probs=159.3
Q ss_pred CCcceeeccCCCCCCC--CCChhhhcCCCCccEEEccC-CcCc-cCcccccCCCCCcEEEcCCCCCC-Cc-ccccCCCCC
Q 040774 235 PQLEFFYNFAPNNSPL--QIPDNIFIGMPKLKVLDFTR-MRLL-SLPSSIHLLTDLRTLCLDSCQLE-DI-RVIGELRKL 308 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~--~i~~~~f~~~~~Lr~L~Ls~-~~i~-~lp~~i~~L~~Lr~L~L~~~~l~-~l-~~i~~L~~L 308 (1035)
.+++.|++.+ +...+ .+|.. |.++++|++|++++ |.+. .+|..|+++++|++|++++|.++ .+ ..++++++|
T Consensus 50 ~~l~~L~L~~-~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSG-LNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEEC-CCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCC-CCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 5789999998 44444 57765 58899999999995 7777 67999999999999999999987 33 779999999
Q ss_pred cEEecccCcCC-cchHhhccCCcCCEEcccCCcccc-ccChhhhcCCC-CCcEEEccCCccceeeccccccccccCHHhh
Q 040774 309 EILSLQASAIE-QLPMEIGQLTQLKLLDLSNCSKLK-VIAPNVLSNLS-QLEELYMANCSIEWEVLGLSIERSNASLVEL 385 (1035)
Q Consensus 309 ~~L~L~~~~l~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l 385 (1035)
++|++++|.++ .+|..++.+++|++|++++|. +. .+|.. ++++. +|++|++++|.+. +..+..+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~-l~~l~~~L~~L~L~~N~l~-----------~~~~~~~ 194 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS-YGSFSKLFTSMTISRNRLT-----------GKIPPTF 194 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG-GGCCCTTCCEEECCSSEEE-----------EECCGGG
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH-HhhhhhcCcEEECcCCeee-----------ccCChHH
Confidence 99999999888 788999999999999999998 55 77776 88888 9999999999887 4455667
Q ss_pred cCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeecccccC
Q 040774 386 KNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPG 465 (1035)
Q Consensus 386 ~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~ 465 (1035)
..++ |+.|++++|.....+.. .+.++++|+.|+++++..
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~----------------------------------------~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASV----------------------------------------LFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGG----------------------------------------GCCTTSCCSEEECCSSEE
T ss_pred hCCc-ccEEECcCCcccCcCCH----------------------------------------HHhcCCCCCEEECCCCce
Confidence 7776 99999988764322111 034456677777766443
Q ss_pred ccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccc
Q 040774 466 LTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSL 517 (1035)
Q Consensus 466 ~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 517 (1035)
. ...+.+ ..+++|++|+++++.- .+..+.....+++|+.|+++++
T Consensus 234 ~-~~~~~~--~~l~~L~~L~Ls~N~l----~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 234 A-FDLGKV--GLSKNLNGLDLRNNRI----YGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp C-CBGGGC--CCCTTCCEEECCSSCC----EECCCGGGGGCTTCCEEECCSS
T ss_pred e-eecCcc--cccCCCCEEECcCCcc----cCcCChHHhcCcCCCEEECcCC
Confidence 2 223332 3466777777776652 1111223344555555555553
No 56
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=4.2e-20 Score=221.84 Aligned_cols=172 Identities=19% Similarity=0.231 Sum_probs=79.0
Q ss_pred cccCCccEEEeecCCccceeccCC-cc----------ccCcCcccceeecccccccccccccccccCCCCCcceEEEeec
Q 040774 476 EGFAELKHLNVQNNSNFLCIVDPL-QV----------RCGAFPMLESVVLQSLINLERICHGQLRAESFCNLKTIKVGSC 544 (1035)
Q Consensus 476 ~~l~~L~~L~l~~~~~l~~~~~~~-~~----------~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c 544 (1035)
..+++|++|++.++..+..+.-.. .| ....+++|++|+++++. +.......+ ...+++|++|++.+|
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l-~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELI-AKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHH-HHHCTTCCEEEEESC
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHH-HHhCCCCcEEeCCCc
Confidence 457889999999987544321100 00 11245566666666653 211100000 013566666666666
Q ss_pred CCCcccCChhhhhcCCCCceEEecccCcccchhhhhccccccccCccccccccccCCcceeeccccccccccccCccccc
Q 040774 545 HKLKNLFSFSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAI 624 (1035)
Q Consensus 545 ~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~ 624 (1035)
..+...........+++|++|++++|.....+...++.+. ..+++|++|+++++. ..+..... ..+
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~------------~~~~~L~~L~l~~~~-~~~~~~~l-~~l 206 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP------------DTYTSLVSLNISCLA-SEVSFSAL-ERL 206 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC------------TTCCCCCEEECTTCC-SCCCHHHH-HHH
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh------------hcCCcCcEEEecccC-CcCCHHHH-HHH
Confidence 5444321112334566666666666653221111111110 124566666666553 11100000 011
Q ss_pred cccCCcccEEEEccCCCcccccChhHHhhcCCCcEEEEecc
Q 040774 625 SCSVQNLTRLILEDCRKLKYVFSYSIAKRLGQLQHLEICRC 665 (1035)
Q Consensus 625 p~~~~~L~~L~l~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 665 (1035)
...+++|+.|++.+|..+..++ ..+..+++|++|.+..|
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~--~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLA--TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHH--HHHHHCTTCSEEECSBC
T ss_pred HHhCCCCcEEecCCCCcHHHHH--HHHhcCCcceEcccccc
Confidence 1134566666666665554422 23455666666665554
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=191.59 Aligned_cols=153 Identities=23% Similarity=0.339 Sum_probs=120.9
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCc
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLE 309 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~ 309 (1035)
.|+.....++++ +....+|..++ ++|++|++++|.++.+|. .+.++++|++|++++|.++.+ ..++++++|+
T Consensus 29 ~C~~~~~c~~~~--~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSS--GSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCS--TTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCC--CCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 444555556554 67778887653 589999999999988865 788999999999999998866 5688999999
Q ss_pred EEecccCcCCcchHh-hccCCcCCEEcccCCccccccCh-hhhcCCCCCcEEEccCCc-cceeeccccccccccCHHhhc
Q 040774 310 ILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCS-IEWEVLGLSIERSNASLVELK 386 (1035)
Q Consensus 310 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~l~ 386 (1035)
+|++++|.++.+|.. ++++++|++|++++|. ++.+|. ..++++++|++|++++|. +. ......++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------~~~~~~~~ 171 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------KIQRKDFA 171 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------EECTTTTT
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------ccCHHHcc
Confidence 999999999988876 7889999999999987 778887 458889999999998884 43 23345677
Q ss_pred CCCCCCEEEEeecCCC
Q 040774 387 NLSRLTTLEINILDAG 402 (1035)
Q Consensus 387 ~L~~L~~L~l~~~~~~ 402 (1035)
.+++|++|++++|...
T Consensus 172 ~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 172 GLTFLEELEIDASDLQ 187 (353)
T ss_dssp TCCEEEEEEEEETTCC
T ss_pred CCCCCCEEECCCCCcC
Confidence 7888888888887644
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=4.8e-18 Score=182.59 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=130.3
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
+.++..++.+..+|..+ .++|++|++.+ +....++...|..+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~--n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHG--NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeC--CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56677777777777544 36788888886 566677777778888888888888888876 677888888888888888
Q ss_pred C-CCCc--ccccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceee
Q 040774 295 Q-LEDI--RVIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEV 370 (1035)
Q Consensus 295 ~-l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 370 (1035)
. ++.+ ..+.++++|++|++++|.++.+ |..+.++++|++|++++|. ++.+++..++++++|++|++++|.+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~--- 166 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRIS--- 166 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC---
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccc---
Confidence 6 7665 6678888888888888888766 4557888888888888887 77777766788888888888888775
Q ss_pred ccccccccccCHHhhcCCCCCCEEEEeecCCC
Q 040774 371 LGLSIERSNASLVELKNLSRLTTLEINILDAG 402 (1035)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 402 (1035)
......+..+++|+.|++++|...
T Consensus 167 --------~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 167 --------SVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp --------EECTTTTTTCTTCCEEECCSSCCC
T ss_pred --------ccCHHHhcCccccCEEECCCCccc
Confidence 223334677788888888777644
No 59
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.77 E-value=4.1e-19 Score=209.25 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=127.2
Q ss_pred CCHHHHhhcCC-eeEeCC------CCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcC-CCh
Q 040774 1 RDRHVLESIGS-KTIGID------VLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVTLAKALRNK-SIV 72 (1035)
Q Consensus 1 R~~~v~~~~~~-~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~-~~~ 72 (1035)
|++.|+..++. ..|+++ +|+++|||+||+++.+.. ..+++.+| |+|+||||+++|+.|+.+ .+.
T Consensus 273 Rd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp SCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred cChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 77888876554 567777 999999999999997542 22344444 999999999999999998 477
Q ss_pred hHHHHHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhh-hHHHhcccccC-CCcccHHHHHHHHHHcCcccCCCcHH
Q 040774 73 SAWKEALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEEL-KQLFLQCSLMG-SPQASMQDLLKYAIGLGILKGVSTVE 150 (1035)
Q Consensus 73 ~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~l-k~cFly~s~Fp-~~~~~~~~Li~~w~a~g~~~~~~~~~ 150 (1035)
++|+.+ ...++..+|++||+.||.+ . |+||+|||+|| ++.|+++.++.+|+++|. +
T Consensus 345 eeW~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------e 402 (1221)
T 1vt4_I 345 DNWKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------S 402 (1221)
T ss_dssp HHHHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------H
T ss_pred HHHhcC--------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------H
Confidence 888742 1256899999999999998 7 99999999999 799999999999999871 2
Q ss_pred HHHHHHHHHHHHHHHhcccccccCcceeehhhhHHHHHH
Q 040774 151 EARDKVNALVDQLKDACLLLDGINSYWFSMHDVVSDVAI 189 (1035)
Q Consensus 151 ~~~~~~~~~~~~L~~~sl~~~~~~~~~~~mHdl~~dla~ 189 (1035)
+ +.+++++|+++||++..+...+|+|||++++++.
T Consensus 403 d----Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 D----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp H----HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred H----HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 3 3447999999999987655678999999999763
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=9.3e-18 Score=192.45 Aligned_cols=226 Identities=22% Similarity=0.308 Sum_probs=181.7
Q ss_pred CCCCCC---CCccEEEecCCCCCCCCCC--CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cc
Q 040774 207 PRQWPD---KKCSRISLYDNNISEIPQG--WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SI 280 (1035)
Q Consensus 207 ~~~~~~---~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i 280 (1035)
...+|. ..++.+++++|.+..++.. ..+++|++|++++ +....++...|.++++|++|+|++|.++.+|. .|
T Consensus 55 l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~--n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 55 LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR--NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp CSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCS--SCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred cCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCC--CcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 444543 7899999999999977633 3899999999997 67788888889999999999999999999975 69
Q ss_pred cCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccC-cCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCC
Q 040774 281 HLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQAS-AIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQL 356 (1035)
Q Consensus 281 ~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L 356 (1035)
..+++|++|++++|.++.+ ..+.++++|++|++++| .+..+|. .+..+++|++|++++|. ++.+|. +..+++|
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L 209 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKL 209 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCccc
Confidence 9999999999999999977 57999999999999995 7777776 48999999999999997 889985 8999999
Q ss_pred cEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchh
Q 040774 357 EELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTL 436 (1035)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l 436 (1035)
++|++++|.+. ...+..+..+++|+.|++++|.+..++...
T Consensus 210 ~~L~Ls~N~l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------------------------- 250 (440)
T 3zyj_A 210 DELDLSGNHLS-----------AIRPGSFQGLMHLQKLWMIQSQIQVIERNA---------------------------- 250 (440)
T ss_dssp CEEECTTSCCC-----------EECTTTTTTCTTCCEEECTTCCCCEECTTS----------------------------
T ss_pred CEEECCCCccC-----------ccChhhhccCccCCEEECCCCceeEEChhh----------------------------
Confidence 99999999987 445667889999999999988765444321
Q ss_pred hhccCCceeeccccCccccceeecccccCccccccccCccccCCccEEEeecCC
Q 040774 437 KLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNS 490 (1035)
Q Consensus 437 ~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~ 490 (1035)
+.++++|+.|+|+++.- ....+.. ...+++|+.|++++++
T Consensus 251 ------------~~~l~~L~~L~L~~N~l-~~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 ------------FDNLQSLVEINLAHNNL-TLLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp ------------STTCTTCCEEECTTSCC-CCCCTTT-TSSCTTCCEEECCSSC
T ss_pred ------------hcCCCCCCEEECCCCCC-CccChhH-hccccCCCEEEcCCCC
Confidence 44556777777776532 2222211 1346777777777765
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=1.2e-19 Score=217.98 Aligned_cols=237 Identities=17% Similarity=0.143 Sum_probs=116.1
Q ss_pred cCccccceeecccccCccccc--c-cc----------CccccCCccEEEeecCCccceeccCCcccc-CcCcccceeecc
Q 040774 450 RGMKNVEYLCLDELPGLTNVL--H-DL----------DGEGFAELKHLNVQNNSNFLCIVDPLQVRC-GAFPMLESVVLQ 515 (1035)
Q Consensus 450 ~~l~~L~~L~L~~~~~~~~~l--~-~l----------~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 515 (1035)
..+++|+.|++.++....+.. + .+ ....+++|++|+++++. +. +...... ..+++|++|++.
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~---~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VT---DDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CC---HHHHHHHHHHCTTCCEEEEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-Ec---HHHHHHHHHhCCCCcEEeCC
Confidence 345677777777765443221 0 00 01246778888887775 11 1100011 246788888888
Q ss_pred cccccccccccccccCCCCCcceEEEeecCCCcccCC---hhhhhcCCCCceEEecccCcccchhhhhccccccccCccc
Q 040774 516 SLINLERICHGQLRAESFCNLKTIKVGSCHKLKNLFS---FSIAKFLPNLKELKTTSTVEVEHNEIILENENHLYTPLSL 592 (1035)
Q Consensus 516 ~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~L~~l~~---~~~~~~l~~L~~L~l~~c~~l~~~~~~l~~l~~~~~~~~~ 592 (1035)
+|..+...... .....+++|++|++.+|. +..... ......+++|++|++++|.. ......++.+.
T Consensus 139 ~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~l~-------- 207 (594)
T 2p1m_B 139 SCEGFSTDGLA-AIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLAS-EVSFSALERLV-------- 207 (594)
T ss_dssp SCEEEEHHHHH-HHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCS-CCCHHHHHHHH--------
T ss_pred CcCCCCHHHHH-HHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCC-cCCHHHHHHHH--------
Confidence 77654431100 012256788888887765 322211 01223566788888877751 00111111110
Q ss_pred cccccccCCcceeecccc-ccccccccCccccccccCCcccEEEEccCCC------cccccChhHHhhcCCCcEEE-Eec
Q 040774 593 FNEKLVLPKLEVLELRDI-NVAKIWHNQLSAAISCSVQNLTRLILEDCRK------LKYVFSYSIAKRLGQLQHLE-ICR 664 (1035)
Q Consensus 593 ~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~------l~~l~~~~~~~~l~~L~~L~-i~~ 664 (1035)
..+++|++|++++| .+..+.. +-..+++|+.|.+..|.. +..+++ .+..+++|+.|. +.+
T Consensus 208 ----~~~~~L~~L~L~~~~~~~~l~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~--~l~~~~~L~~Ls~~~~ 275 (594)
T 2p1m_B 208 ----TRCPNLKSLKLNRAVPLEKLAT------LLQRAPQLEELGTGGYTAEVRPDVYSGLSV--ALSGCKELRCLSGFWD 275 (594)
T ss_dssp ----HHCTTCCEEECCTTSCHHHHHH------HHHHCTTCSEEECSBCCCCCCHHHHHHHHH--HHHTCTTCCEEECCBT
T ss_pred ----HhCCCCcEEecCCCCcHHHHHH------HHhcCCcceEcccccccCccchhhHHHHHH--HHhcCCCcccccCCcc
Confidence 11577888888776 3333211 111456788887776642 112111 235566666662 221
Q ss_pred cccccccccccccccCCCceeccccCeeecccCCcccccccCCcccCCCCcceeeeecC
Q 040774 665 CPHLEEVVGKESGVEADPSFVFPRLTILKLHYLPELRAFYPGVHTLECPMLTKLEVYIC 723 (1035)
Q Consensus 665 c~~l~~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~~~~~~~~~~~~~L~~L~i~~c 723 (1035)
... .........+++|++|++++|. ++..........+++|++|++.+|
T Consensus 276 ~~~---------~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 276 AVP---------AYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp CCG---------GGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred cch---------hhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc
Confidence 110 0001111245677777777765 443221111224677777777776
No 62
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.76 E-value=1.6e-18 Score=227.30 Aligned_cols=178 Identities=21% Similarity=0.341 Sum_probs=145.9
Q ss_pred CCHHHHhh-cCC-eeEeCCC-CCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHH
Q 040774 1 RDRHVLES-IGS-KTIGIDV-LSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKE 77 (1035)
Q Consensus 1 R~~~v~~~-~~~-~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~ 77 (1035)
|++.||.. ++. +.|++++ |+++|||+||.++++. ..+++.+++++|+++|+|+||||+++|+.|+.+. ..|+.
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 78888865 445 8999996 9999999999999953 2345667899999999999999999999999884 46999
Q ss_pred HHHHhcCCCCCCcc----chhhhhhHHHHHhhhccChhhhhHHHhcccccC-CCcccHHHHHHHHHHcCcccCCCcHHHH
Q 040774 78 ALRQLKKPSHWNFE----GVLAKTYSAIELSYKYLREEELKQLFLQCSLMG-SPQASMQDLLKYAIGLGILKGVSTVEEA 152 (1035)
Q Consensus 78 ~l~~l~~~~~~~~~----~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp-~~~~~~~~Li~~w~a~g~~~~~~~~~~~ 152 (1035)
+++.+.......+. ...+.+..++.+||+.||.+ .|+||+|||+|| ++.|+++.++.+|.+++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~- 410 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------EE- 410 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HH-
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------HH-
Confidence 99998764432211 12246899999999999998 799999999999 79999999999997652 23
Q ss_pred HHHHHHHHHHHHHhcccccccCc--ceeehhhhHHHHHHHHHccc
Q 040774 153 RDKVNALVDQLKDACLLLDGINS--YWFSMHDVVSDVAISIASRD 195 (1035)
Q Consensus 153 ~~~~~~~~~~L~~~sl~~~~~~~--~~~~mHdl~~dla~~v~~~e 195 (1035)
+.+++++|+++||++..... .+|+|||++|++|+..+.+|
T Consensus 411 ---~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 ---VEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ---HHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ---HHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 34579999999999865332 36999999999999997765
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.76 E-value=4.5e-20 Score=213.96 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=104.6
Q ss_pred CCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-----cCcccccCCCCCcEEEcCCCCCCCc--ccc-cCCC
Q 040774 235 PQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDSCQLEDI--RVI-GELR 306 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i-~~L~ 306 (1035)
++|++|++++ +.........+|..+++|++|++++|.+. .++..+..+++|++|++++|.+... ..+ ..+.
T Consensus 3 ~~l~~L~Ls~-~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhh-cccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4566777765 22222222344677888888888888877 4577788888888888888887642 222 2344
Q ss_pred ----CCcEEecccCcCC-----cchHhhccCCcCCEEcccCCccccccChhhh-----cCCCCCcEEEccCCccceeecc
Q 040774 307 ----KLEILSLQASAIE-----QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVL-----SNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 307 ----~L~~L~L~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l-----~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|++|++++|.++ .+|..+..+++|++|++++|. ++......+ ...++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~--- 157 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA--- 157 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG---
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH---
Confidence 6888888888877 457778888888888888887 543222112 2356788888888877610
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
........+..+++|++|++++|..
T Consensus 158 ----~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 158 ----SCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ----GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ----HHHHHHHHHhhCCCCCEEECcCCCc
Confidence 0012244566778888888887753
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=7.2e-18 Score=183.41 Aligned_cols=178 Identities=21% Similarity=0.292 Sum_probs=151.5
Q ss_pred CCccEEEecCCCCCCCCCCC--CCCCcceeeccCCCCCCCCC---ChhhhcCCCCccEEEccCCcCccCcccccCCCCCc
Q 040774 213 KKCSRISLYDNNISEIPQGW--ECPQLEFFYNFAPNNSPLQI---PDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLR 287 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~--~~~~Lr~L~l~~~~~~~~~i---~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr 287 (1035)
..++++++++|.+..++... .+++|++|++.+ +....+ +.. +..+++|++|++++|.+..+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS--NGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS--SCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCC--CccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCC
Confidence 68999999999999998753 899999999997 444433 444 4579999999999999999999999999999
Q ss_pred EEEcCCCCCCCc---ccccCCCCCcEEecccCcCCc-chHhhccCCcCCEEcccCCccccc--cChhhhcCCCCCcEEEc
Q 040774 288 TLCLDSCQLEDI---RVIGELRKLEILSLQASAIEQ-LPMEIGQLTQLKLLDLSNCSKLKV--IAPNVLSNLSQLEELYM 361 (1035)
Q Consensus 288 ~L~L~~~~l~~l---~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l 361 (1035)
+|++++|.++.+ ..+.++++|++|++++|.+.. .|..+..+++|++|++++|. +.. +|.. ++++++|++|++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~L 182 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI-FTELRNLTFLDL 182 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC-CTTCTTCCEEEC
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH-HhhCcCCCEEEC
Confidence 999999998866 478999999999999999884 45668999999999999998 554 5655 899999999999
Q ss_pred cCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCC
Q 040774 362 ANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPS 406 (1035)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 406 (1035)
++|.+. ...+..+..+++|+.|++++|....++.
T Consensus 183 s~n~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 216 (306)
T 2z66_A 183 SQCQLE-----------QLSPTAFNSLSSLQVLNMSHNNFFSLDT 216 (306)
T ss_dssp TTSCCC-----------EECTTTTTTCTTCCEEECTTSCCSBCCS
T ss_pred CCCCcC-----------CcCHHHhcCCCCCCEEECCCCccCccCh
Confidence 999987 3445678889999999999988655443
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1.1e-17 Score=192.59 Aligned_cols=177 Identities=27% Similarity=0.330 Sum_probs=155.2
Q ss_pred CCccEEEecCCCCCCCCC-CC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQ-GW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L 289 (1035)
..++++++++|.+..++. .+ .+++|++|++++ +....++...|.++++|++|+|++|.+..+|. .+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR--NSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCC--CccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 689999999999987743 33 899999999997 67778888889999999999999999999865 58999999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccC-cCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQAS-AIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCS 365 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~-~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 365 (1035)
++++|.++.+ ..+.++++|++|++++| .+..+|.. +..+++|++|++++|. ++.+|. +..+++|++|++++|.
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGLEELEMSGNH 229 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTCCEEECTTSC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccccEEECcCCc
Confidence 9999999977 57999999999999995 77788764 8999999999999998 888875 8999999999999999
Q ss_pred cceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 366 IEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
+. ...+..+.++++|+.|++++|.+..++
T Consensus 230 l~-----------~~~~~~~~~l~~L~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 230 FP-----------EIRPGSFHGLSSLKKLWVMNSQVSLIE 258 (452)
T ss_dssp CS-----------EECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred Cc-----------ccCcccccCccCCCEEEeCCCcCceEC
Confidence 87 455678999999999999988755443
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=2.7e-17 Score=193.64 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=93.8
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDS 293 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 293 (1035)
.++.+++++|.+..+|..+. ++|++|++.+ +....+|. .+++|++|++++|.++.+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~--N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPD--NNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECS--CCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecC--CCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence 46788888888888876654 6777777776 45556665 36777777777777777776 567777777777
Q ss_pred CCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 294 CQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 294 ~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
|.++.++. .+.+|++|++++|.++.+|.. +++|++|++++|. ++.+|.. +.+|+.|++++|.+.
T Consensus 111 N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~----~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 111 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL----PSELCKLWAYNNQLT 174 (622)
T ss_dssp CCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCS
T ss_pred CcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc----cCCCCEEECCCCCCC
Confidence 77776644 567777777777777777653 3677777777775 6666542 456677777776664
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=3.9e-17 Score=192.22 Aligned_cols=156 Identities=24% Similarity=0.195 Sum_probs=118.4
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++.+++++|.+..+|. .+++|++|++++ +....+|. .+++|++|++++|.++.+|. .+.+|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~--N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSG--NQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECS--CCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCC--CcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 578888888888888877 568888888887 55667775 57888889998888888877 56788888888
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|.++.++. .+++|++|++++|.++.+|. .+.+|+.|++++|. ++.+| ..+++|++|++++|.+.
T Consensus 130 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~l~----- 194 (622)
T 3g06_A 130 GNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQLA----- 194 (622)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCS-----
T ss_pred CCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCC-CCCCc----ccCCCCcEEECCCCCCC-----
Confidence 888887743 24888888998888888775 35678888888887 77777 34678888888888775
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCCC
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGIL 404 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~ 404 (1035)
..+. .+++|+.|++++|.+..+
T Consensus 195 -------~l~~---~~~~L~~L~L~~N~l~~l 216 (622)
T 3g06_A 195 -------SLPT---LPSELYKLWAYNNRLTSL 216 (622)
T ss_dssp -------CCCC---CCTTCCEEECCSSCCSSC
T ss_pred -------CCCC---ccchhhEEECcCCccccc
Confidence 1111 236777777777664433
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=2.1e-17 Score=175.79 Aligned_cols=179 Identities=23% Similarity=0.372 Sum_probs=149.4
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCccc-ccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSS-IHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~-i~~L~~Lr~L~L~ 292 (1035)
..+.++++++.+..+|..+. ++++.|++.+ +....++...|.++++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQS--NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCS--SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcC--CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 46788899999988887664 6899999987 667788887789999999999999999988765 5789999999999
Q ss_pred CCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcccee
Q 040774 293 SCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWE 369 (1035)
Q Consensus 293 ~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 369 (1035)
+|.++.+ ..+.++++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|...++++++|++|++++|.+.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~-- 170 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLK-- 170 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS--
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCc--
Confidence 9998876 5678899999999999999877654 7889999999999997 88888877889999999999999876
Q ss_pred eccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCc
Q 040774 370 VLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSG 407 (1035)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 407 (1035)
......+..+++|++|++++|.+..++..
T Consensus 171 ---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 171 ---------RVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ---------EeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 33334578889999999998887666553
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.76 E-value=1.4e-17 Score=178.95 Aligned_cols=180 Identities=28% Similarity=0.442 Sum_probs=159.0
Q ss_pred CCccEEEecCCCCCCCCCC--CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCc-CccC-cccccCCCCCcE
Q 040774 213 KKCSRISLYDNNISEIPQG--WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMR-LLSL-PSSIHLLTDLRT 288 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~-i~~l-p~~i~~L~~Lr~ 288 (1035)
..++++++++|.+..++.. ..+++|++|++.+ +....+++..|..+++|++|++++|. +..+ |..+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHS--NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCC--CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 6899999999999987753 3889999999997 56677767778999999999999997 8888 778999999999
Q ss_pred EEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCc
Q 040774 289 LCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCS 365 (1035)
Q Consensus 289 L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~ 365 (1035)
|++++|.++.+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+|...++++++|++|++++|.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCc
Confidence 99999999876 6689999999999999999988765 8999999999999997 889998779999999999999999
Q ss_pred cceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCC
Q 040774 366 IEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPS 406 (1035)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 406 (1035)
+. ...+..+..+++|+.|++++|.+..++.
T Consensus 189 l~-----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 189 VA-----------HVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CC-----------EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred cc-----------ccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 87 3456778899999999999998765554
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.5e-19 Score=209.46 Aligned_cols=385 Identities=18% Similarity=0.115 Sum_probs=202.6
Q ss_pred CccEEEecCCCCCCCC--C-CCCCCCcceeeccCCCCCCC-----CCChhhhcCCCCccEEEccCCcCccC-cccc-cCC
Q 040774 214 KCSRISLYDNNISEIP--Q-GWECPQLEFFYNFAPNNSPL-----QIPDNIFIGMPKLKVLDFTRMRLLSL-PSSI-HLL 283 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~--~-~~~~~~Lr~L~l~~~~~~~~-----~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i-~~L 283 (1035)
++++++++++.+...+ . ...+++|++|++.+ +... .++ ..|..+++|++|++++|.+... +..+ ..+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~--~~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDD--CGLTEARCKDIS-SALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEES--SCCCHHHHHHHH-HHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccC--CCCCHHHHHHHH-HHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 5667777777765332 1 11566777777776 2222 122 3356677788888877777542 2222 233
Q ss_pred C----CCcEEEcCCCCCCC-----c-ccccCCCCCcEEecccCcCCcc-hHhhc-----cCCcCCEEcccCCccccccC-
Q 040774 284 T----DLRTLCLDSCQLED-----I-RVIGELRKLEILSLQASAIEQL-PMEIG-----QLTQLKLLDLSNCSKLKVIA- 346 (1035)
Q Consensus 284 ~----~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~~l-p~~i~-----~L~~L~~L~l~~~~~l~~lp- 346 (1035)
. +|++|++++|.++. + ..+.++++|++|++++|.+... +..+. ..++|++|++++|. ++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHH
Confidence 3 57788888777763 2 5667777788888877776532 22222 24567788887775 44422
Q ss_pred ---hhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhc-----CCCCCCEEEEeecCCCCCCCccccccccEEEE
Q 040774 347 ---PNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELK-----NLSRLTTLEINILDAGILPSGFFSRKLERYRI 418 (1035)
Q Consensus 347 ---~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-----~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 418 (1035)
...+.++++|++|++++|.+. ...+..+. ..++|++|++++|............
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~-----------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~------- 221 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDIN-----------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG------- 221 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCH-----------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH-------
T ss_pred HHHHHHHhhCCCCCEEECcCCCcc-----------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH-------
Confidence 122556677788887777765 11222222 3557777777777654321100000
Q ss_pred EEccccccCCcccccchhhhccCCceeeccccCccccceeecccccCccc----cccccCccccCCccEEEeecCCccce
Q 040774 419 VVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLTN----VLHDLDGEGFAELKHLNVQNNSNFLC 494 (1035)
Q Consensus 419 ~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~----~l~~l~~~~l~~L~~L~l~~~~~l~~ 494 (1035)
.+..+++|++|+++++.-... +.+.+. ..+++|++|++++|. +..
T Consensus 222 -----------------------------~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~-~~~~~L~~L~L~~n~-l~~ 270 (461)
T 1z7x_W 222 -----------------------------IVASKASLRELALGSNKLGDVGMAELCPGLL-HPSSRLRTLWIWECG-ITA 270 (461)
T ss_dssp -----------------------------HHHHCTTCCEEECCSSBCHHHHHHHHHHHHT-STTCCCCEEECTTSC-CCH
T ss_pred -----------------------------HHHhCCCccEEeccCCcCChHHHHHHHHHHh-cCCCCceEEECcCCC-CCH
Confidence 012234555555555431111 011111 235677777777764 211
Q ss_pred ecc-CCccccCcCcccceeeccccccccccccccc---ccCCCCCcceEEEeecCCCcccCC---hhhhhcCCCCceEEe
Q 040774 495 IVD-PLQVRCGAFPMLESVVLQSLINLERICHGQL---RAESFCNLKTIKVGSCHKLKNLFS---FSIAKFLPNLKELKT 567 (1035)
Q Consensus 495 ~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~~~l~~L~~L~l~~c~~L~~l~~---~~~~~~l~~L~~L~l 567 (1035)
.+. ........+++|++|+++++. +.......+ -....++|++|++.+|. +..... ...+..+++|++|++
T Consensus 271 ~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 271 KGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEc
Confidence 000 000022335677777777642 221100000 01133578888888875 332211 123456788999999
Q ss_pred cccCcccchhhhh-ccccccccCccccccccccCCcceeeccccccccccccCccccccccCCcccEEEEccCCCccccc
Q 040774 568 TSTVEVEHNEIIL-ENENHLYTPLSLFNEKLVLPKLEVLELRDINVAKIWHNQLSAAISCSVQNLTRLILEDCRKLKYVF 646 (1035)
Q Consensus 568 ~~c~~l~~~~~~l-~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~p~~~~~L~~L~l~~c~~l~~l~ 646 (1035)
++|.....+...+ ..+. ...++|++|++++|.+...........+ ..+++|+.|++++| .++...
T Consensus 349 s~n~i~~~~~~~l~~~l~------------~~~~~L~~L~L~~n~i~~~~~~~l~~~l-~~~~~L~~L~l~~N-~i~~~~ 414 (461)
T 1z7x_W 349 SNNRLEDAGVRELCQGLG------------QPGSVLRVLWLADCDVSDSSCSSLAATL-LANHSLRELDLSNN-CLGDAG 414 (461)
T ss_dssp CSSBCHHHHHHHHHHHHT------------STTCCCCEEECTTSCCCHHHHHHHHHHH-HHCCCCCEEECCSS-SCCHHH
T ss_pred cCCccccccHHHHHHHHc------------CCCCceEEEECCCCCCChhhHHHHHHHH-HhCCCccEEECCCC-CCCHHH
Confidence 9886532211111 1111 0146899999999877632111110111 14678999999998 455432
Q ss_pred ChhHHhhc----CCCcEEEEecccc
Q 040774 647 SYSIAKRL----GQLQHLEICRCPH 667 (1035)
Q Consensus 647 ~~~~~~~l----~~L~~L~i~~c~~ 667 (1035)
...+...+ ..|+.|.+.++..
T Consensus 415 ~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 415 ILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHHHhccCCcchhheeeccccc
Confidence 22233333 3588888877653
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=6.2e-17 Score=173.42 Aligned_cols=179 Identities=22% Similarity=0.278 Sum_probs=154.4
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++.+++.++.+..+|..+. ++++.|++.+ +....++...|..+++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~--N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSE--NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-TTCCEEECTT--SCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC-CCCCEEEcCC--CcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 467889999999999987764 7899999997 667777777789999999999999999988764 789999999999
Q ss_pred CCCCCCc-ccccCCCCCcEEecccCcCCcch-HhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceee
Q 040774 293 SCQLEDI-RVIGELRKLEILSLQASAIEQLP-MEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEV 370 (1035)
Q Consensus 293 ~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~ 370 (1035)
+|.++.+ ..+..+++|++|++++|.++.+| ..+..+++|++|++++|. ++.+|++.+.++++|++|++++|.+.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--- 161 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT--- 161 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS---
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC---
Confidence 9999887 67889999999999999999887 458999999999999997 88899887889999999999999887
Q ss_pred ccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCc
Q 040774 371 LGLSIERSNASLVELKNLSRLTTLEINILDAGILPSG 407 (1035)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 407 (1035)
......+..+++|+.|++++|.+..+|..
T Consensus 162 --------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~ 190 (290)
T 1p9a_G 162 --------ELPAGLLNGLENLDTLLLQENSLYTIPKG 190 (290)
T ss_dssp --------CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred --------ccCHHHhcCcCCCCEEECCCCcCCccChh
Confidence 23334567899999999999988777765
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=5e-17 Score=173.72 Aligned_cols=176 Identities=21% Similarity=0.314 Sum_probs=118.1
Q ss_pred EEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCC
Q 040774 218 ISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQL 296 (1035)
Q Consensus 218 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l 296 (1035)
+.-.+..+.++|..+. ++|++|++++ +....++...|.++++|++|++++|.+..++. .+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTT--CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCCC-CCccEEECCC--CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 3334445556665543 5677787776 55666666667778888888888888777643 677788888888888887
Q ss_pred CCc--ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccc--cChhhhcCCCCCcEEEccCCccceeec
Q 040774 297 EDI--RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKV--IAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 297 ~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
+.+ ..+.++++|++|++++|.+..++. .++.+++|++|++++|. ++. +|.. ++++++|++|++++|.+....
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~- 165 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY- 165 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcCC-
Confidence 755 567788888888888887776655 47778888888888876 555 4444 777888888888888765110
Q ss_pred cccccccccCHHhhcCCCCCC-EEEEeecCCCCCCC
Q 040774 372 GLSIERSNASLVELKNLSRLT-TLEINILDAGILPS 406 (1035)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~-~L~l~~~~~~~~~~ 406 (1035)
...+..+..++.|. .|++++|....++.
T Consensus 166 -------~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 166 -------CTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp -------GGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred -------HHHhhhhhhccccceeeecCCCcccccCc
Confidence 12233444444444 67777776554443
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.72 E-value=7.2e-17 Score=172.95 Aligned_cols=198 Identities=22% Similarity=0.283 Sum_probs=160.3
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCcccccCCCCCcEE
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEIL 311 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L 311 (1035)
.+++++++++.+ +....+|..++ +.+++|++++|.+..+ |..|..+++|++|++++|.++.+...+.+++|++|
T Consensus 8 ~l~~l~~l~~~~--~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 8 KVASHLEVNCDK--RNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp CSTTCCEEECTT--SCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccCCccEEECCC--CCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 567899999987 67788988763 7899999999999987 57899999999999999999988666899999999
Q ss_pred ecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCC
Q 040774 312 SLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRL 391 (1035)
Q Consensus 312 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 391 (1035)
++++|.++.+|..+..+++|++|++++|. ++.+|++.++++++|++|++++|.+. ......+..+++|
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L 150 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELK-----------TLPPGLLTPTPKL 150 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCC-----------CCCTTTTTTCTTC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCC-----------ccChhhcccccCC
Confidence 99999999999999999999999999998 88998877999999999999999987 3334457889999
Q ss_pred CEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccccCccccceeecccccCcccccc
Q 040774 392 TTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEWRGMKNVEYLCLDELPGLTNVLH 471 (1035)
Q Consensus 392 ~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~~~l~~L~~L~L~~~~~~~~~l~ 471 (1035)
+.|++++|.+..+|..+ +.++++|+.|+++++.- ..+..
T Consensus 151 ~~L~L~~N~l~~l~~~~----------------------------------------~~~l~~L~~L~L~~N~l-~~ip~ 189 (290)
T 1p9a_G 151 EKLSLANNNLTELPAGL----------------------------------------LNGLENLDTLLLQENSL-YTIPK 189 (290)
T ss_dssp CEEECTTSCCSCCCTTT----------------------------------------TTTCTTCCEEECCSSCC-CCCCT
T ss_pred CEEECCCCcCCccCHHH----------------------------------------hcCcCCCCEEECCCCcC-CccCh
Confidence 99999999877666543 34456666777766432 22222
Q ss_pred ccCccccCCccEEEeecCC
Q 040774 472 DLDGEGFAELKHLNVQNNS 490 (1035)
Q Consensus 472 ~l~~~~l~~L~~L~l~~~~ 490 (1035)
.+ ...++|+.|.+.+++
T Consensus 190 ~~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GF--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp TT--TTTCCCSEEECCSCC
T ss_pred hh--cccccCCeEEeCCCC
Confidence 22 235567777777765
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2e-16 Score=168.20 Aligned_cols=175 Identities=28% Similarity=0.406 Sum_probs=155.9
Q ss_pred CCccEEEecCCCCCCCCCC--CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQG--WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L 289 (1035)
..++++++++|.+..++.. ..+++|++|++.+ +....++..+|..+++|++|++++|.+..+|. .+..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND--NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCS--SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCC--CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 6799999999999988753 3899999999997 67788999999999999999999999999865 57899999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
++++|.++.+ ..++++++|++|++++|.++.+|.. +..+++|++|++++|. ++.+++..+.++++|++|++++|.+
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcC
Confidence 9999999877 5689999999999999999998876 7999999999999997 8889887789999999999999988
Q ss_pred ceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 367 EWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
. ......+..+++|+.|++++|..
T Consensus 194 ~-----------~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 194 K-----------RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp S-----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred C-----------cCCHHHhccccCCCEEEecCCCe
Confidence 7 33334578899999999999874
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=3.1e-16 Score=169.89 Aligned_cols=187 Identities=20% Similarity=0.251 Sum_probs=154.4
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
.+++++++.++.+..++....+++|++|++++ +....++. |..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~--n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKD--NQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCS--SCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccC--CcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 47888999999888887656888999999987 56666766 688999999999999988876 58889999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|.++.++.+.++++|++|++++|.++.+|. ++.+++|++|++++|. ++.+++ ++++++|++|++++|.+.
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~----- 186 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS----- 186 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC-----
Confidence 9998888778999999999999998888876 8889999999999987 777766 788999999999998876
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEc
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVG 421 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~ 421 (1035)
.+..+..+++|++|++++|....++......+|+.+.+..+
T Consensus 187 --------~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 187 --------DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQ 227 (308)
T ss_dssp --------CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEE
T ss_pred --------cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCC
Confidence 12237888899999999988777775446777888777644
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.70 E-value=2.2e-16 Score=165.77 Aligned_cols=175 Identities=23% Similarity=0.328 Sum_probs=152.1
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLD 292 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~ 292 (1035)
..++++++++.+..+|..+. ++++.|++.+ +....+++..|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQS--TGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccC--CCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45678999999999987765 6899999997 6677788777899999999999999999874 568999999999999
Q ss_pred CCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcccee
Q 040774 293 SCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWE 369 (1035)
Q Consensus 293 ~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~ 369 (1035)
+|.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. ++.+|+..++++++|++|++++|.+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-- 168 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQ-- 168 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS--
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCC--
Confidence 9999876 5788999999999999999988876 6889999999999997 88999877999999999999999987
Q ss_pred eccccccccccCHHhhcCCCCCCEEEEeecCCCC
Q 040774 370 VLGLSIERSNASLVELKNLSRLTTLEINILDAGI 403 (1035)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 403 (1035)
......+..+++|+.|++++|....
T Consensus 169 ---------~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 169 ---------SVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---------CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ---------ccCHHHHhCCCCCCEEEeeCCceeC
Confidence 3344568889999999999987543
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=9e-18 Score=183.18 Aligned_cols=239 Identities=17% Similarity=0.189 Sum_probs=119.8
Q ss_pred CccEEEecCCCCCCCCCC--CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEc
Q 040774 214 KCSRISLYDNNISEIPQG--WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L 291 (1035)
+++++++++|.+..++.. ..+++|++|++++ +....+++ |..+++|++|++++|.++.+|. .++|++|++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~--n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSS--NVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTT--SCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCC--CcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 455555555555544321 2455555555554 22222222 4555555555555555554432 245555555
Q ss_pred CCCCCCCcccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccccChhhh-cCCCCCcEEEccCCcccee
Q 040774 292 DSCQLEDIRVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVL-SNLSQLEELYMANCSIEWE 369 (1035)
Q Consensus 292 ~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l-~~L~~L~~L~l~~~~~~~~ 369 (1035)
++|.++.+.. ..+++|++|++++|.++.++. .++.+++|++|++++|. +..+++..+ +.+++|++|++++|.+..
T Consensus 107 ~~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~- 183 (317)
T 3o53_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD- 183 (317)
T ss_dssp CSSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE-
T ss_pred CCCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCcCcc-
Confidence 5555544411 124455555555555554433 34555555555555554 444332223 245555555555555441
Q ss_pred eccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeeccc
Q 040774 370 VLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGEW 449 (1035)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~~ 449 (1035)
+.....+++|++|++++|.+..++.. +
T Consensus 184 ------------~~~~~~l~~L~~L~Ls~N~l~~l~~~-----------------------------------------~ 210 (317)
T 3o53_A 184 ------------VKGQVVFAKLKTLDLSSNKLAFMGPE-----------------------------------------F 210 (317)
T ss_dssp ------------EECCCCCTTCCEEECCSSCCCEECGG-----------------------------------------G
T ss_pred ------------cccccccccCCEEECCCCcCCcchhh-----------------------------------------h
Confidence 01122345555555555544333221 3
Q ss_pred cCccccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeeccccccccc
Q 040774 450 RGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSLINLER 522 (1035)
Q Consensus 450 ~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 522 (1035)
.++++|+.|+++++. +..+.+.+ ..+++|+.|++++++-.. +........+++|+.|.+.++..++.
T Consensus 211 ~~l~~L~~L~L~~N~-l~~l~~~~--~~l~~L~~L~l~~N~~~~---~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 211 QSAAGVTWISLRNNK-LVLIEKAL--RFSQNLEHFDLRGNGFHC---GTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp GGGTTCSEEECTTSC-CCEECTTC--CCCTTCCEEECTTCCCBH---HHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cccCcccEEECcCCc-ccchhhHh--hcCCCCCEEEccCCCccC---cCHHHHHhccccceEEECCCchhccC
Confidence 445677777777754 33333333 457788888888776220 11111445567777777776665544
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.2e-16 Score=170.74 Aligned_cols=180 Identities=22% Similarity=0.273 Sum_probs=152.6
Q ss_pred CCccEEEecCCCCCCCCC-C-CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQ-G-WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~-~-~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L 289 (1035)
..++++++++|.+..++. . ..+++|++|++.+ +....++...|..+++|++|++++|.+..++ ..+.++++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCC--CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 579999999999998775 3 3799999999997 6777888888899999999999999999875 679999999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCc--chHhhccCCcCCEEcccCCccccccChhhhcCCCCCc----EEEc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQ--LPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLE----ELYM 361 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~----~L~l 361 (1035)
++++|.+..+ ..++++++|++|++++|.++. +|..++.+++|++|++++|. ++.+++..+..+.+|+ +|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeec
Confidence 9999999877 469999999999999999986 78999999999999999998 8888876677777776 8999
Q ss_pred cCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCc
Q 040774 362 ANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSG 407 (1035)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~ 407 (1035)
++|.+.. .........+|+.|++++|....++..
T Consensus 185 s~n~l~~------------~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 185 SLNPMNF------------IQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CSSCCCE------------ECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred CCCcccc------------cCccccCCCcccEEECCCCceeecCHh
Confidence 9998871 112222334899999999987766653
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.69 E-value=1.6e-16 Score=172.23 Aligned_cols=151 Identities=23% Similarity=0.347 Sum_probs=127.8
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEe
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILS 312 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 312 (1035)
++++|++|++.+ +....++. |..+++|++|++++|.+..++. +..+++|++|++++|.++.++.++++++|++|+
T Consensus 39 ~l~~L~~L~l~~--~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFG--TGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTT--SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeC--CCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 567899999987 55666663 6789999999999999998877 999999999999999999888899999999999
Q ss_pred cccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCC
Q 040774 313 LQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392 (1035)
Q Consensus 313 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (1035)
+++|.++.+|. +..+++|++|++++|. ++.+++ ++++++|++|++++|.+. . +..+..+++|+
T Consensus 114 l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~------------~-~~~l~~l~~L~ 176 (308)
T 1h6u_A 114 LTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVS------------D-LTPLANLSKLT 176 (308)
T ss_dssp CTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCC------------C-CGGGTTCTTCC
T ss_pred CCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCC------------C-ChhhcCCCCCC
Confidence 99999998875 8999999999999997 787776 889999999999999876 2 22388889999
Q ss_pred EEEEeecCCCCCC
Q 040774 393 TLEINILDAGILP 405 (1035)
Q Consensus 393 ~L~l~~~~~~~~~ 405 (1035)
.|++++|....++
T Consensus 177 ~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 177 TLKADDNKISDIS 189 (308)
T ss_dssp EEECCSSCCCCCG
T ss_pred EEECCCCccCcCh
Confidence 9999888754433
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=9.7e-17 Score=167.27 Aligned_cols=138 Identities=19% Similarity=0.288 Sum_probs=88.8
Q ss_pred CCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCc-CccCcc-cccCCCCCcEEEcCC-CCCCCc--
Q 040774 225 ISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMR-LLSLPS-SIHLLTDLRTLCLDS-CQLEDI-- 299 (1035)
Q Consensus 225 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~-i~~lp~-~i~~L~~Lr~L~L~~-~~l~~l-- 299 (1035)
+.++|. + .+++++|++.+ +....+++..|..+++|++|++++|. +..+|. .|.++++|++|++++ |.++.+
T Consensus 23 l~~ip~-~-~~~l~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS-L-PPSTQTLKLIE--THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC-C-CTTCCEEEEES--CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC-C-CCcccEEEEeC--CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 455555 2 23666666665 55566666666667777777777775 666643 566677777777776 666654
Q ss_pred ccccCCCCCcEEecccCcCCcchHhhccCCcCC---EEcccCCccccccChhhhcCCCCCc-EEEccCCccc
Q 040774 300 RVIGELRKLEILSLQASAIEQLPMEIGQLTQLK---LLDLSNCSKLKVIAPNVLSNLSQLE-ELYMANCSIE 367 (1035)
Q Consensus 300 ~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~---~L~l~~~~~l~~lp~~~l~~L~~L~-~L~l~~~~~~ 367 (1035)
..+.++++|++|++++|.++.+|. ++.+++|+ +|++++|..++.+|+..++++++|+ +|++++|.+.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 456667777777777776666665 66666666 7777766336666665566667777 7776666654
No 81
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.68 E-value=1.6e-17 Score=181.28 Aligned_cols=134 Identities=19% Similarity=0.199 Sum_probs=95.8
Q ss_pred CCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhhc
Q 040774 248 SPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIG 326 (1035)
Q Consensus 248 ~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~ 326 (1035)
.....+..+|..+++|++|++++|.+..++ ..|..+++|++|++++|.++.+..++.+++|++|++++|.++.+|
T Consensus 21 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~---- 96 (317)
T 3o53_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL---- 96 (317)
T ss_dssp THHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----
T ss_pred chhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----
Confidence 334455566777788888888888888774 678888888888888888876655888888888888888877665
Q ss_pred cCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecC
Q 040774 327 QLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILD 400 (1035)
Q Consensus 327 ~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 400 (1035)
..++|++|++++|. +..++.. .+++|++|++++|.+. ......++.+++|++|++++|.
T Consensus 97 ~~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 97 VGPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp ECTTCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCC-----------SGGGBCTGGGSSEEEEECTTSC
T ss_pred CCCCcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCC-----------CccchhhhccCCCCEEECCCCC
Confidence 34788888888876 6666543 3677888888887765 2222344555666666665554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.67 E-value=4.4e-16 Score=165.61 Aligned_cols=154 Identities=21% Similarity=0.313 Sum_probs=109.6
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcE
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEI 310 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~ 310 (1035)
.+++|+.|++.+ +....++. +..+++|++|++++|.+..++ .++.+++|++|++++|.++.+ ..++++++|++
T Consensus 39 ~l~~L~~L~l~~--~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANN--SDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTT--SCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCC--CCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 567777777776 44445543 567788888888888777764 677778888888888877766 34677888888
Q ss_pred EecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCC
Q 040774 311 LSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLS 389 (1035)
Q Consensus 311 L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 389 (1035)
|++++|.++.+|.. ++.+++|++|++++|. ++.+|+..++++++|++|++++|.+. ......++.++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----------~~~~~~~~~l~ 181 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQ-----------SLPEGVFDKLT 181 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC-----------CCCTTTTTTCT
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcC-----------ccCHHHhcCCc
Confidence 88888877766654 5777888888888776 77777766677788888888877765 22333456777
Q ss_pred CCCEEEEeecCCCC
Q 040774 390 RLTTLEINILDAGI 403 (1035)
Q Consensus 390 ~L~~L~l~~~~~~~ 403 (1035)
+|+.|++++|....
T Consensus 182 ~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 182 QLKDLRLYQNQLKS 195 (272)
T ss_dssp TCCEEECCSSCCSC
T ss_pred cCCEEECCCCcCCc
Confidence 77777777766443
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=2.8e-16 Score=181.53 Aligned_cols=148 Identities=18% Similarity=0.140 Sum_probs=88.9
Q ss_pred CCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecc
Q 040774 235 PQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQ 314 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~ 314 (1035)
++|++|++++ +....+++..|..+++|++|+|++|.+..+++ ++.+++|++|++++|.++.++ ..++|++|+++
T Consensus 34 ~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSG--NPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCS--SCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred CCccEEEeeC--CcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence 4666666665 44455555556666667777777666665544 666666777777666655442 22666666666
Q ss_pred cCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhc-CCCCCCE
Q 040774 315 ASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELK-NLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~~ 393 (1035)
+|.+..+|. ..+++|++|++++|. ++.+++..++++++|++|++++|.+. ...+..+. .+++|+.
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-----------~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEID-----------TVNFAELAASSDTLEH 173 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCC-----------EEEGGGGGGGTTTCCE
T ss_pred CCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCC-----------CcChHHHhhhCCcccE
Confidence 666665553 245666666666665 55554444666666666666666665 22333443 5666666
Q ss_pred EEEeecCCC
Q 040774 394 LEINILDAG 402 (1035)
Q Consensus 394 L~l~~~~~~ 402 (1035)
|++++|.+.
T Consensus 174 L~Ls~N~l~ 182 (487)
T 3oja_A 174 LNLQYNFIY 182 (487)
T ss_dssp EECTTSCCC
T ss_pred EecCCCccc
Confidence 666666543
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=2.3e-16 Score=164.42 Aligned_cols=191 Identities=15% Similarity=0.248 Sum_probs=164.3
Q ss_pred CCccEEEecCCCCCCCCCC-C-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccC-CcCccCc-ccccCCCCCcE
Q 040774 213 KKCSRISLYDNNISEIPQG-W-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTR-MRLLSLP-SSIHLLTDLRT 288 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~-~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~-~~i~~lp-~~i~~L~~Lr~ 288 (1035)
..++++++++|.+..++.. + .+++|++|++.+ +.....+++..|..+++|++|++++ |.++.+| ..|.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~-n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSI-DVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEEC-CSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCC-CCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 5899999999999988763 3 899999999998 3348889988899999999999998 9999886 57899999999
Q ss_pred EEcCCCCCCCcccccCCCCCc---EEecccC-cCCcchHh-hccCCcCC-EEcccCCccccccChhhhcCCCCCcEEEcc
Q 040774 289 LCLDSCQLEDIRVIGELRKLE---ILSLQAS-AIEQLPME-IGQLTQLK-LLDLSNCSKLKVIAPNVLSNLSQLEELYMA 362 (1035)
Q Consensus 289 L~L~~~~l~~l~~i~~L~~L~---~L~L~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 362 (1035)
|++++|.++.++.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++|. ++.+|...+.. ++|++|+++
T Consensus 110 L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-CEEEEEECT
T ss_pred EeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-CCCCEEEcC
Confidence 999999999886688888888 9999999 99988865 89999999 99999998 88999875555 899999999
Q ss_pred CCc-cceeeccccccccccCHHhhcCC-CCCCEEEEeecCCCCCCCccccccccEEEE
Q 040774 363 NCS-IEWEVLGLSIERSNASLVELKNL-SRLTTLEINILDAGILPSGFFSRKLERYRI 418 (1035)
Q Consensus 363 ~~~-~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~ 418 (1035)
+|. +. ......+..+ ++|+.|++++|....+|.. .+.+|+.|.+
T Consensus 188 ~n~~l~-----------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l 233 (239)
T 2xwt_C 188 KNKYLT-----------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA 233 (239)
T ss_dssp TCTTCC-----------EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred CCCCcc-----------cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence 995 76 2334567788 9999999999998888876 5667776654
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=1.1e-15 Score=163.95 Aligned_cols=171 Identities=24% Similarity=0.335 Sum_probs=151.3
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++++++.+|.+..++....+++|++|++++ +....+++ |.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~--n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG--NKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCS--SCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccC--CccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 57899999999999888766899999999997 66666766 7899999999999999998765 9999999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|.++.++.++.+++|++|++++|.++.+ ..++.+++|++|++++|. ++.+++ ++++++|++|++++|.+.
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~----- 191 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS----- 191 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC-----
Confidence 99999999999999999999999999988 579999999999999997 888876 899999999999999886
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
. +..+..+++|+.|++++|.....|
T Consensus 192 -------~-l~~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 192 -------D-LRALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp -------B-CGGGTTCTTCSEEEEEEEEEECCC
T ss_pred -------C-ChhhccCCCCCEEECcCCcccCCc
Confidence 1 345889999999999998755433
No 86
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=185.28 Aligned_cols=175 Identities=20% Similarity=0.301 Sum_probs=137.6
Q ss_pred CCHHHHhhcCCeeEe---CCCCCHHHHHHHHHHhhCCCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHH
Q 040774 1 RDRHVLESIGSKTIG---IDVLSDEEAWTLFKKMAGDCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKE 77 (1035)
Q Consensus 1 R~~~v~~~~~~~~~~---l~~L~~~~~~~Lf~~~a~~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~ 77 (1035)
|+..|+..++...|+ +++|+.+||++||.+.++. +.+...+.+++|+++|+|+||||+.+|+.|+.+. ..|+.
T Consensus 265 R~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 265 RDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp SCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred CCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCC--CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 677777765443444 3699999999999999964 2234457899999999999999999999999873 36999
Q ss_pred HHHHhcCCCCCCcc----chhhhhhHHHHHhhhccChhhhhHHHhcccccC-CCcccHHHHHHHHHHcCcccCCCcHHHH
Q 040774 78 ALRQLKKPSHWNFE----GVLAKTYSAIELSYKYLREEELKQLFLQCSLMG-SPQASMQDLLKYAIGLGILKGVSTVEEA 152 (1035)
Q Consensus 78 ~l~~l~~~~~~~~~----~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp-~~~~~~~~Li~~w~a~g~~~~~~~~~~~ 152 (1035)
+++.+.......+. .....+..++..||+.||++ .|.||+|||+|| ++.|+.+.++.+|.+++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~- 410 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE- 410 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH-
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------HH-
Confidence 99988754321111 12246889999999999998 799999999999 79999999999996541 23
Q ss_pred HHHHHHHHHHHHHhccccccc--CcceeehhhhHHHHHHHHH
Q 040774 153 RDKVNALVDQLKDACLLLDGI--NSYWFSMHDVVSDVAISIA 192 (1035)
Q Consensus 153 ~~~~~~~~~~L~~~sl~~~~~--~~~~~~mHdl~~dla~~v~ 192 (1035)
+.+++++|++++|++... ...+|+|||++|+++....
T Consensus 411 ---~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 ---VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ---HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 345799999999997542 2347999999999999874
No 87
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.66 E-value=1.6e-15 Score=161.25 Aligned_cols=173 Identities=24% Similarity=0.303 Sum_probs=149.5
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEc
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCL 291 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L 291 (1035)
..++.+.+.++.+..++....+++|++|++.+ +....++ .|..+++|++|++++|.+..+|. .++.+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~--n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGG--NKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTT--SCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCC--CCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 57889999999998888777899999999998 4455554 46899999999999999998865 4789999999999
Q ss_pred CCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccce
Q 040774 292 DSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEW 368 (1035)
Q Consensus 292 ~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 368 (1035)
++|.++.+ ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. ++.+++..++++++|++|++++|.+.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~- 194 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK- 194 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC-
Confidence 99999877 4589999999999999999988766 6899999999999997 88888887899999999999999987
Q ss_pred eeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 369 EVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
......++.+++|+.|++++|..
T Consensus 195 ----------~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 195 ----------SVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp ----------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ----------ccCHHHHhCCcCCCEEEccCCCc
Confidence 33445578899999999999874
No 88
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=2.6e-16 Score=171.21 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=53.8
Q ss_pred CCCCccEEEccCCcCc-cCcccc--cCCCCCcEEEcCCCCCCCc-ccccCC-----CCCcEEecccCcCCcch-HhhccC
Q 040774 259 GMPKLKVLDFTRMRLL-SLPSSI--HLLTDLRTLCLDSCQLEDI-RVIGEL-----RKLEILSLQASAIEQLP-MEIGQL 328 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~-~lp~~i--~~L~~Lr~L~L~~~~l~~l-~~i~~L-----~~L~~L~L~~~~l~~lp-~~i~~L 328 (1035)
.+++|++|++++|.+. .+|..+ +.+++|++|++++|.++.+ ..++.+ ++|++|++++|.+..+| ..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3555555555555555 345443 5555555555555555443 333443 55555555555555444 345555
Q ss_pred CcCCEEcccCCccccc--cChh-hhcCCCCCcEEEccCCccc
Q 040774 329 TQLKLLDLSNCSKLKV--IAPN-VLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 329 ~~L~~L~l~~~~~l~~--lp~~-~l~~L~~L~~L~l~~~~~~ 367 (1035)
++|++|++++|..... +|.. .++++++|++|++++|.+.
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 5555555555542211 1222 0145555555555555543
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=8.5e-17 Score=175.00 Aligned_cols=154 Identities=16% Similarity=0.195 Sum_probs=125.0
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCcc--Cccccc-------CCCCCcEEEcCCCCCCC-c-cc
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS--LPSSIH-------LLTDLRTLCLDSCQLED-I-RV 301 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~--lp~~i~-------~L~~Lr~L~L~~~~l~~-l-~~ 301 (1035)
..++|+.+++.+ +.. .+|..++.. |++|++++|.+.. +|..+. ++++|++|++++|.++. + ..
T Consensus 41 ~~~~L~~l~l~~--n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKRV--DTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHHC--CTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeecc--ccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 346788888887 444 888877543 9999999999864 677666 79999999999999884 3 44
Q ss_pred c--cCCCCCcEEecccCcCCcchHhhccC-----CcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecccc
Q 040774 302 I--GELRKLEILSLQASAIEQLPMEIGQL-----TQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLS 374 (1035)
Q Consensus 302 i--~~L~~L~~L~L~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 374 (1035)
+ +.+++|++|++++|.++.+|..++.+ ++|++|++++|. +..+++..++++++|++|++++|.+...
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----- 188 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE----- 188 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH-----
T ss_pred HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc-----
Confidence 4 89999999999999999888888887 999999999998 8888876699999999999999986510
Q ss_pred ccccccCHHhh--cCCCCCCEEEEeecCCC
Q 040774 375 IERSNASLVEL--KNLSRLTTLEINILDAG 402 (1035)
Q Consensus 375 ~~~~~~~~~~l--~~L~~L~~L~l~~~~~~ 402 (1035)
...+..+ +.+++|++|++++|.+.
T Consensus 189 ----~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 189 ----RGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp ----HHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred ----hHHHHHHHhccCCCCCEEECCCCcCc
Confidence 0123344 78899999999988754
No 90
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.1e-15 Score=176.47 Aligned_cols=211 Identities=17% Similarity=0.205 Sum_probs=163.5
Q ss_pred CCccEEEecCCCCCCCCC-CC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEE
Q 040774 213 KKCSRISLYDNNISEIPQ-GW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLC 290 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~-~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 290 (1035)
.+++++++++|.+..++. .+ .+++|++|++++ +....+++ |..+++|++|++++|.+..+|.. ++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSS--NVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTT--SCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeC--CCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 479999999999998764 33 899999999998 44544444 78999999999999999988753 8999999
Q ss_pred cCCCCCCCcccccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhc-CCCCCcEEEccCCccce
Q 040774 291 LDSCQLEDIRVIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLS-NLSQLEELYMANCSIEW 368 (1035)
Q Consensus 291 L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~-~L~~L~~L~l~~~~~~~ 368 (1035)
+++|.++.+.. ..+++|++|++++|.++.+ |..++.+++|++|++++|. +..+++..+. ++++|++|++++|.+..
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99999988732 3578999999999999977 5568999999999999998 6665444465 89999999999999871
Q ss_pred eeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCCccccccccEEEEEEccccccCCcccccchhhhccCCceeecc
Q 040774 369 EVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSRICLGE 448 (1035)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~i~~~~ 448 (1035)
. .....+++|+.|++++|.+..+|..
T Consensus 184 ~-------------~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------------------------- 209 (487)
T 3oja_A 184 V-------------KGQVVFAKLKTLDLSSNKLAFMGPE----------------------------------------- 209 (487)
T ss_dssp E-------------ECCCCCTTCCEEECCSSCCCEECGG-----------------------------------------
T ss_pred c-------------cccccCCCCCEEECCCCCCCCCCHh-----------------------------------------
Confidence 1 2344689999999999986655443
Q ss_pred ccCccccceeecccccCccccccccCccccCCccEEEeecCC
Q 040774 449 WRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNS 490 (1035)
Q Consensus 449 ~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~ 490 (1035)
+.++++|+.|+++++.- ..+.+.+ ..+++|+.|++++|+
T Consensus 210 ~~~l~~L~~L~Ls~N~l-~~lp~~l--~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 210 FQSAAGVTWISLRNNKL-VLIEKAL--RFSQNLEHFDLRGNG 248 (487)
T ss_dssp GGGGTTCSEEECTTSCC-CEECTTC--CCCTTCCEEECTTCC
T ss_pred HcCCCCccEEEecCCcC-cccchhh--ccCCCCCEEEcCCCC
Confidence 33446677777776543 2333333 456778888887776
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=3.1e-15 Score=165.52 Aligned_cols=148 Identities=19% Similarity=0.223 Sum_probs=82.6
Q ss_pred EEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCcc-Cc-ccccCCCCCcE-EEcCC
Q 040774 217 RISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS-LP-SSIHLLTDLRT-LCLDS 293 (1035)
Q Consensus 217 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~-lp-~~i~~L~~Lr~-L~L~~ 293 (1035)
.++-++++++++|..+ .+++++|++++ +.+..+|+.+|.++++|++|+|++|.+.+ +| ..|.++++|+. +.+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEES--CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccC--CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3455555666666544 24566666665 55556666666666666666666666543 43 24556665553 34444
Q ss_pred CCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCC-CCcEEEccCCccc
Q 040774 294 CQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLS-QLEELYMANCSIE 367 (1035)
Q Consensus 294 ~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~-~L~~L~l~~~~~~ 367 (1035)
|+++.+ ..|.++++|++|++++|.++.+|.. +....++.+|++.++..+..++...+..+. .+++|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 555544 4556666666666666666655432 344455556666555445555554444443 4555666555554
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=1.1e-14 Score=152.69 Aligned_cols=152 Identities=22% Similarity=0.369 Sum_probs=137.5
Q ss_pred CCccEEEecCCCCCCCCCC--CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEE
Q 040774 213 KKCSRISLYDNNISEIPQG--WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTL 289 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L 289 (1035)
..++++++++|.+..++.. ..+++|++|++++ +....+++..|..+++|++|++++|.+..+| ..+..+++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY--NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC--CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 6899999999999987653 3799999999997 6777788888899999999999999999886 567999999999
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
++++|.++.+ ..++++.+|++|++++|.++.+|. .++.+++|++|++++|. ++.+|+..+.++++|++|++++|.+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCce
Confidence 9999999987 457999999999999999998887 58999999999999998 8899887799999999999999988
Q ss_pred c
Q 040774 367 E 367 (1035)
Q Consensus 367 ~ 367 (1035)
.
T Consensus 192 ~ 192 (251)
T 3m19_A 192 D 192 (251)
T ss_dssp C
T ss_pred e
Confidence 6
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=1.2e-14 Score=149.86 Aligned_cols=148 Identities=25% Similarity=0.347 Sum_probs=127.5
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~ 294 (1035)
..++.+++.+..+|..+. ++|++|++++ +....+++..|..+++|++|++++|.+..+|. .+..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEcCC--CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 357778888888887664 8899999997 66667777778899999999999999998865 5688999999999999
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
.++.+ ..+..+.+|++|++++|.++.+|..+..+++|++|++++|. +..+|+..+.++++|++|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99877 45789999999999999999999999999999999999987 88888777888999999999998875
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.59 E-value=9e-15 Score=149.56 Aligned_cols=148 Identities=23% Similarity=0.328 Sum_probs=120.0
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~ 294 (1035)
+.++..++.+..+|..+. ++++.|++.+ +....++...|..+++|++|+|++|.+..+ |..|..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~--n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQ--NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCS--SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCC--CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 457777888888887654 6888888886 667777777788888888888888888876 778888888888888888
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
.++.+ ..+.++++|++|++++|.++.+ |..+..+++|++|++++|. ++.++++.+..+++|++|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88877 4477888888888888888876 4568888888888888887 77887776888888888888888765
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=5.9e-15 Score=149.99 Aligned_cols=170 Identities=25% Similarity=0.378 Sum_probs=138.8
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~ 294 (1035)
+.++..++.+..+|..+ .++|++|++.+ +....++..+|..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLET--NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCC--CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 35667777777777655 36899999997 56678888888999999999999999998865 4688999999999999
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeec
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVL 371 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~ 371 (1035)
.++.+ ..++++++|++|++++|.++.+|.. +..+++|++|++++|. ++.+++..++++++|++|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~---- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD---- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee----
Confidence 99877 4578999999999999999988766 6889999999999997 88888877889999999999999765
Q ss_pred cccccccccCHHhhcCCCCCCEEEEeecCC-CCCCCc
Q 040774 372 GLSIERSNASLVELKNLSRLTTLEINILDA-GILPSG 407 (1035)
Q Consensus 372 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~-~~~~~~ 407 (1035)
+.+++|+.|+++.+.. +.+|..
T Consensus 162 --------------~~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 162 --------------CTCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp --------------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred --------------cCCCCHHHHHHHHHhCCceeecc
Confidence 2456777777777663 344443
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=1e-14 Score=156.37 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=146.7
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEe
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILS 312 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~ 312 (1035)
.+++|+.|++.+ +....++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++.++++++|++|+
T Consensus 44 ~l~~L~~L~l~~--~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANN--SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTT--SCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred hcCcccEEEccC--CCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEE
Confidence 578899999997 56667764 6889999999999999999987 999999999999999999998899999999999
Q ss_pred cccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCC
Q 040774 313 LQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392 (1035)
Q Consensus 313 L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (1035)
+++|.++.++ .+..+++|++|++++|. ++.++ . ++++++|++|++++|.+. ... .+..+++|+
T Consensus 119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~N~l~------------~~~-~l~~l~~L~ 181 (291)
T 1h6t_A 119 LEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQIS------------DIV-PLAGLTKLQ 181 (291)
T ss_dssp CTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCG-G-GGGCTTCSEEECCSSCCC------------CCG-GGTTCTTCC
T ss_pred CCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcch-h-hccCCCCCEEEccCCccc------------cch-hhcCCCccC
Confidence 9999999885 68999999999999997 88873 3 899999999999999986 222 288999999
Q ss_pred EEEEeecCCCCCCCccccccccEEEEEEc
Q 040774 393 TLEINILDAGILPSGFFSRKLERYRIVVG 421 (1035)
Q Consensus 393 ~L~l~~~~~~~~~~~~~~~~L~~l~~~~~ 421 (1035)
.|++++|.+..++......+|+.+.+..+
T Consensus 182 ~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 182 NLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp EEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred EEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 99999999888876557888888887654
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=9.7e-15 Score=171.75 Aligned_cols=171 Identities=24% Similarity=0.339 Sum_probs=150.4
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++.|++.+|.+..++....+++|+.|++++ +....+++ |..+++|+.|+|++|.+..+| .+..+++|++|+|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~--N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG--NKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTT--SCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeC--CCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 57788899999999888766899999999997 56666766 789999999999999999877 69999999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLG 372 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~ 372 (1035)
+|.+..++.+..+++|++|+|++|.++.+ ..++.+++|++|+|++|. +..+++ ++.+++|++|++++|.+.
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~----- 188 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS----- 188 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC-----
Confidence 99999998899999999999999999988 569999999999999997 777776 899999999999999886
Q ss_pred ccccccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 373 LSIERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 373 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
.+..+..+++|+.|++++|.....|
T Consensus 189 --------~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 189 --------DLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp --------BCGGGTTCTTCSEEECCSEEEECCC
T ss_pred --------CChHHccCCCCCEEEccCCcCcCCc
Confidence 1356889999999999998755444
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=147.20 Aligned_cols=148 Identities=18% Similarity=0.315 Sum_probs=112.6
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCC-ChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQI-PDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDS 293 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i-~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~ 293 (1035)
+.+++++|.+..+|..+ ...++.|++.+ +....+ +..+|..+++|++|++++|.++.++. .|..+++|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNN--NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCS--SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCC--CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46888888888887655 24567888886 445555 45667788888888888888887754 788888888888888
Q ss_pred CCCCCc--ccccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 294 CQLEDI--RVIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 294 ~~l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
|.++.+ ..++++++|++|++++|.++.+ |..+..+++|++|++++|. ++.+++..++.+++|++|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 888766 4578888888888888888866 5567888888888888886 77775555788888888888888765
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=6.3e-15 Score=155.28 Aligned_cols=166 Identities=20% Similarity=0.248 Sum_probs=130.6
Q ss_pred EEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCC
Q 040774 217 RISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQL 296 (1035)
Q Consensus 217 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l 296 (1035)
.+.+..+.+..++....+++|++|++.+ +....++ .|..+++|++|++++|.+..+|. +..+++|++|++++|.+
T Consensus 23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~--n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l 97 (263)
T 1xeu_A 23 KQNLGKQSVTDLVSQKELSGVQNFNGDN--SNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL 97 (263)
T ss_dssp HHHHTCSCTTSEECHHHHTTCSEEECTT--SCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred HHHhcCCCcccccchhhcCcCcEEECcC--CCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence 3344555555555444677888888886 5566676 36788999999999999988877 88899999999999998
Q ss_pred CCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeecccccc
Q 040774 297 EDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIE 376 (1035)
Q Consensus 297 ~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~ 376 (1035)
+.++.+.. .+|++|++++|.++.+| .+..+++|++|++++|. ++.++. ++.+++|++|++++|.+.
T Consensus 98 ~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~--------- 163 (263)
T 1xeu_A 98 KNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEIT--------- 163 (263)
T ss_dssp SCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCC---------
T ss_pred CCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCc---------
Confidence 88765655 88999999999988876 58889999999999987 788763 888999999999999886
Q ss_pred ccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 377 RSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 377 ~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
. . ..+..+++|+.|++++|.....|
T Consensus 164 --~-~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 --N-T-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp --B-C-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred --c-h-HHhccCCCCCEEeCCCCcccCCc
Confidence 1 1 56788889999999988754443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=2.8e-15 Score=162.93 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=47.4
Q ss_pred cCCCCccEEEccCCcCccC-c----ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCc---chHh--h
Q 040774 258 IGMPKLKVLDFTRMRLLSL-P----SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQ---LPME--I 325 (1035)
Q Consensus 258 ~~~~~Lr~L~Ls~~~i~~l-p----~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~---lp~~--i 325 (1035)
..+++|++|++++|.+... | ..+..+++|++|++++|.+..+ ..++++++|++|++++|.+.. ++.. +
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 4444555555555544421 1 1223444555555555554433 344445555555555544332 2211 2
Q ss_pred ccCCcCCEEcccCCccccccChh---hhcCCCCCcEEEccCCccc
Q 040774 326 GQLTQLKLLDLSNCSKLKVIAPN---VLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 326 ~~L~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l~~~~~~ 367 (1035)
+.+++|++|++++|. ++.++.. .++++++|++|++++|.+.
T Consensus 194 ~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 194 HKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp TSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred hcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 344455555555544 3333221 1234445555555554443
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=2.8e-14 Score=157.82 Aligned_cols=153 Identities=17% Similarity=0.147 Sum_probs=107.3
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCC-c--ccccCCCCCcE-Ee
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLED-I--RVIGELRKLEI-LS 312 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~-l--~~i~~L~~L~~-L~ 312 (1035)
++++..+ +...+||.++ .++++.|+|++|.|+.+|. +|.++++|++|+|++|.+.. + ..|.++.+|++ +.
T Consensus 12 ~~v~C~~--~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQE--SKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEES--TTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecC--CCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 4566654 6677888766 3678899999999998875 68889999999999998754 3 56788888775 55
Q ss_pred cccCcCCcch-HhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCC-ccceeeccccccccccCHHhhcCC-C
Q 040774 313 LQASAIEQLP-MEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC-SIEWEVLGLSIERSNASLVELKNL-S 389 (1035)
Q Consensus 313 L~~~~l~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~L-~ 389 (1035)
+++|+++.+| ..+..+++|++|++++|. +..+|+..+....++..|++.++ .+. ......+..+ .
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~-----------~l~~~~f~~~~~ 154 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIH-----------TIERNSFVGLSF 154 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCC-----------EECTTSSTTSBS
T ss_pred ccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccc-----------cccccchhhcch
Confidence 5667888775 447888899999998887 77777765666677778877653 333 1112223333 3
Q ss_pred CCCEEEEeecCCCCCCCc
Q 040774 390 RLTTLEINILDAGILPSG 407 (1035)
Q Consensus 390 ~L~~L~l~~~~~~~~~~~ 407 (1035)
.++.|++++|.+..++..
T Consensus 155 ~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp SCEEEECCSSCCCEECTT
T ss_pred hhhhhccccccccCCChh
Confidence 567778777776555543
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=2.5e-14 Score=155.31 Aligned_cols=176 Identities=18% Similarity=0.157 Sum_probs=138.1
Q ss_pred CCccEEEecCCCCCC-CCCC---CCCCCcceeeccCCCCCCCCCC---hhhhcCCCCccEEEccCCcCccCc-ccccCCC
Q 040774 213 KKCSRISLYDNNISE-IPQG---WECPQLEFFYNFAPNNSPLQIP---DNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLT 284 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~-l~~~---~~~~~Lr~L~l~~~~~~~~~i~---~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~ 284 (1035)
..++++++++|.+.. .|.. ..+++|++|++++ +......+ ...+..+++|++|++++|.+..+| ..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRN-VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEES-CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeec-ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 358899999999874 4444 5689999999998 44333333 233457999999999999999874 6899999
Q ss_pred CCcEEEcCCCCCCC---c---ccccCCCCCcEEecccCcCCcchHh----hccCCcCCEEcccCCcccccc-ChhhhcCC
Q 040774 285 DLRTLCLDSCQLED---I---RVIGELRKLEILSLQASAIEQLPME----IGQLTQLKLLDLSNCSKLKVI-APNVLSNL 353 (1035)
Q Consensus 285 ~Lr~L~L~~~~l~~---l---~~i~~L~~L~~L~L~~~~l~~lp~~----i~~L~~L~~L~l~~~~~l~~l-p~~~l~~L 353 (1035)
+|++|++++|.+.. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|. +... |+. ++.+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~-~~~~ 247 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPS-APRC 247 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSC-CSSC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhh-HHhc
Confidence 99999999999753 2 3347899999999999999877763 5788999999999998 6666 655 6666
Q ss_pred ---CCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCC
Q 040774 354 ---SQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILP 405 (1035)
Q Consensus 354 ---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~ 405 (1035)
++|++|++++|.+. ..+..+. ++|+.|++++|.+..+|
T Consensus 248 ~~~~~L~~L~Ls~N~l~------------~lp~~~~--~~L~~L~Ls~N~l~~~~ 288 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLE------------QVPKGLP--AKLRVLDLSSNRLNRAP 288 (310)
T ss_dssp CCCTTCCCEECCSSCCC------------SCCSCCC--SCCSCEECCSCCCCSCC
T ss_pred cCcCcCCEEECCCCCCC------------chhhhhc--CCCCEEECCCCcCCCCc
Confidence 69999999999986 2233332 79999999999866544
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=2.1e-14 Score=168.82 Aligned_cols=153 Identities=23% Similarity=0.302 Sum_probs=130.5
Q ss_pred CCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcE
Q 040774 231 GWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEI 310 (1035)
Q Consensus 231 ~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~ 310 (1035)
...+++|+.|++.+ +....++. |..+++|+.|+|++|.+..+|. +..+++|++|+|++|.++.++.++.+++|++
T Consensus 39 ~~~L~~L~~L~l~~--n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANN--SDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTT--CCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCE
T ss_pred hhcCCCCCEEECcC--CCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCE
Confidence 33678899999987 55666764 6889999999999999999876 9999999999999999999989999999999
Q ss_pred EecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCC
Q 040774 311 LSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSR 390 (1035)
Q Consensus 311 L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 390 (1035)
|+|++|.+..+| .+..+++|++|++++|. +..++ . ++.+++|++|++++|.+. ..+. +..+++
T Consensus 114 L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~-~-l~~l~~L~~L~Ls~N~l~------------~~~~-l~~l~~ 176 (605)
T 1m9s_A 114 LSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDIT-V-LSRLTKLDTLSLEDNQIS------------DIVP-LAGLTK 176 (605)
T ss_dssp EECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG-G-GGSCTTCSEEECCSSCCC------------CCGG-GTTCTT
T ss_pred EEecCCCCCCCc-cccCCCccCEEECCCCc-cCCch-h-hcccCCCCEEECcCCcCC------------Cchh-hccCCC
Confidence 999999999875 58999999999999997 77773 3 899999999999999886 2222 888999
Q ss_pred CCEEEEeecCCCCCC
Q 040774 391 LTTLEINILDAGILP 405 (1035)
Q Consensus 391 L~~L~l~~~~~~~~~ 405 (1035)
|+.|++++|.+..++
T Consensus 177 L~~L~Ls~N~i~~l~ 191 (605)
T 1m9s_A 177 LQNLYLSKNHISDLR 191 (605)
T ss_dssp CCEEECCSSCCCBCG
T ss_pred CCEEECcCCCCCCCh
Confidence 999999988765443
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=4.3e-14 Score=141.98 Aligned_cols=146 Identities=17% Similarity=0.209 Sum_probs=83.6
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCcc-CcccccCCCCCcEEEc
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLS-LPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~-lp~~i~~L~~Lr~L~L 291 (1035)
..++++++++|.+..++....+++|++|++.+ +....++ .|..+++|++|++++|.+.. .|..++.+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~--n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINN--IHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEES--CCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccC--CCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 35667777777666666433566666666665 2333332 24556666666666666654 4555666666666666
Q ss_pred CCCCCCC--cccccCCCCCcEEecccCc-CCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCcc
Q 040774 292 DSCQLED--IRVIGELRKLEILSLQASA-IEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSI 366 (1035)
Q Consensus 292 ~~~~l~~--l~~i~~L~~L~~L~L~~~~-l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~ 366 (1035)
++|.++. +..++++++|++|++++|. ++.+| .+..+++|++|++++|. +..++ . +..+++|++|++++|.+
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~-l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-G-IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-T-GGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-H-hccCCCCCEEEeeCccc
Confidence 6666554 2555666666666666664 55555 45566666666666655 55554 2 55566666666665554
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.53 E-value=3e-14 Score=158.21 Aligned_cols=170 Identities=18% Similarity=0.226 Sum_probs=140.8
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhc-CCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFI-GMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDS 293 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~-~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~ 293 (1035)
+.++.+++.+..+|..+. ..++.|++++ +....++...|. .+++|++|+|++|.+..++ ..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP-SYTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC-TTCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC-CCCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 578888888888887653 5688999997 677788888887 8999999999999999885 5789999999999999
Q ss_pred CCCCCc--ccccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCCccccccChhhh---cCCCCCcEEEccCCccc
Q 040774 294 CQLEDI--RVIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNCSKLKVIAPNVL---SNLSQLEELYMANCSIE 367 (1035)
Q Consensus 294 ~~l~~l--~~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~l---~~L~~L~~L~l~~~~~~ 367 (1035)
|.++.+ ..|.++.+|++|++++|.++.+ |..+..+++|++|++++|. ++.+|...+ +++++|++|++++|.+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999876 5688999999999999999977 5668999999999999997 888988755 67899999999999887
Q ss_pred eeeccccccccccCHHhhcCCCC--CCEEEEeecC
Q 040774 368 WEVLGLSIERSNASLVELKNLSR--LTTLEINILD 400 (1035)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~--L~~L~l~~~~ 400 (1035)
......+..++. ++.|++++|.
T Consensus 177 -----------~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 177 -----------KLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp -----------CCCHHHHHHSCHHHHTTEECCSSC
T ss_pred -----------ccCHHHhhhccHhhcceEEecCCC
Confidence 344556777776 4778888876
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=3.4e-14 Score=142.73 Aligned_cols=150 Identities=18% Similarity=0.246 Sum_probs=127.6
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCC--cccccCCCCCcE
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLED--IRVIGELRKLEI 310 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--l~~i~~L~~L~~ 310 (1035)
.+++|++|++.+ +....+|. +..+++|++|++++|.+..++ .+..+++|++|++++|.++. +..++++++|++
T Consensus 42 ~l~~L~~L~l~~--n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLAN--INVTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEES--SCCSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccC--CCccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 567899999997 56667773 688999999999999887765 78899999999999999986 588999999999
Q ss_pred EecccCcCCc-chHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCC
Q 040774 311 LSLQASAIEQ-LPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLS 389 (1035)
Q Consensus 311 L~L~~~~l~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 389 (1035)
|++++|.++. .|..++.+++|++|++++|..++.+|. ++++++|++|++++|.+. .+..+..++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------------~~~~l~~l~ 181 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------------DYRGIEDFP 181 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------------CCTTGGGCS
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------------ChHHhccCC
Confidence 9999999984 788899999999999999976888873 899999999999999886 123788899
Q ss_pred CCCEEEEeecCCC
Q 040774 390 RLTTLEINILDAG 402 (1035)
Q Consensus 390 ~L~~L~l~~~~~~ 402 (1035)
+|+.|++++|.++
T Consensus 182 ~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 182 KLNQLYAFSQTIG 194 (197)
T ss_dssp SCCEEEECBC---
T ss_pred CCCEEEeeCcccC
Confidence 9999999998743
No 107
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.53 E-value=4e-15 Score=164.19 Aligned_cols=128 Identities=20% Similarity=0.259 Sum_probs=74.3
Q ss_pred CCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCC--c-ccccCCCCCcEEecccCcCC-cchHhhccCCcCCEEcc
Q 040774 261 PKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLED--I-RVIGELRKLEILSLQASAIE-QLPMEIGQLTQLKLLDL 336 (1035)
Q Consensus 261 ~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--l-~~i~~L~~L~~L~L~~~~l~-~lp~~i~~L~~L~~L~l 336 (1035)
+++++|++++|.+...+..+..+++|++|++++|.+.. + ..+.++++|++|++++|.+. ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 56666666666666555555566666666666666542 3 45566666666666666655 45555666666666666
Q ss_pred cCCccccc--cChhhhcCCCCCcEEEccCC-ccceeeccccccccccCHHhhcCCC-CCCEEEEeec
Q 040774 337 SNCSKLKV--IAPNVLSNLSQLEELYMANC-SIEWEVLGLSIERSNASLVELKNLS-RLTTLEINIL 399 (1035)
Q Consensus 337 ~~~~~l~~--lp~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~ 399 (1035)
++|..++. ++.. ++++++|++|++++| .+.. ......+..++ +|++|++++|
T Consensus 150 ~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 150 SGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSC
T ss_pred CCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCCCEEEeCCC
Confidence 66633442 3332 556666666666666 5430 01233455566 6666666554
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=5.2e-14 Score=143.87 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=127.7
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+.+++.+ +....+|..+ .++|+.|++++|.+..+|. .|..+++|++|+|++|.++.+ ..|.++++|++|+++
T Consensus 14 ~~v~c~~--~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRG--KGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTT--SCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCC--CCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 4566665 6777888765 3789999999999998865 799999999999999999876 789999999999999
Q ss_pred cCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 315 ASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
+|.++.+|.. +..+++|++|++++|. ++.+++..++++++|++|++++|.+. ......+..+++|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQ-----------TIAKGTFSPLRAIQT 156 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCE
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCC-----------EECHHHHhCCCCCCE
Confidence 9999999877 5889999999999998 88887777999999999999999987 334456888999999
Q ss_pred EEEeecCC
Q 040774 394 LEINILDA 401 (1035)
Q Consensus 394 L~l~~~~~ 401 (1035)
|++++|..
T Consensus 157 L~L~~N~~ 164 (220)
T 2v9t_B 157 MHLAQNPF 164 (220)
T ss_dssp EECCSSCE
T ss_pred EEeCCCCc
Confidence 99998863
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=9.1e-14 Score=142.07 Aligned_cols=147 Identities=17% Similarity=0.197 Sum_probs=127.3
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc--ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEec
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP--SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSL 313 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp--~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L 313 (1035)
+++++++ +....+|..+ ...+++|++++|.++.++ ..|..+++|++|++++|.++.+ ..|+++++|++|++
T Consensus 14 ~~l~~s~--n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSN--QKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCS--SCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCC--CCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 5778776 6777888765 456789999999999884 3489999999999999999977 57999999999999
Q ss_pred ccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCC
Q 040774 314 QASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392 (1035)
Q Consensus 314 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (1035)
++|.++.+|.. +..+++|++|++++|. +..+++..++++++|++|++++|.+. ...+..+..+++|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQIT-----------TVAPGAFDTLHSLS 156 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCC-----------CBCTTTTTTCTTCC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCC-----------EECHHHhcCCCCCC
Confidence 99999988765 8999999999999998 88887666999999999999999987 44467788999999
Q ss_pred EEEEeecCC
Q 040774 393 TLEINILDA 401 (1035)
Q Consensus 393 ~L~l~~~~~ 401 (1035)
.|++++|..
T Consensus 157 ~L~L~~N~l 165 (220)
T 2v70_A 157 TLNLLANPF 165 (220)
T ss_dssp EEECCSCCE
T ss_pred EEEecCcCC
Confidence 999999873
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=8.5e-14 Score=135.95 Aligned_cols=137 Identities=25% Similarity=0.250 Sum_probs=115.0
Q ss_pred CCCCccEEEccCCcCc--cCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCc-chHhhccCCcCCEEc
Q 040774 259 GMPKLKVLDFTRMRLL--SLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQ-LPMEIGQLTQLKLLD 335 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~ 335 (1035)
..++|++|++++|.+. .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3578999999999998 8888889999999999999998888888999999999999999887 777788899999999
Q ss_pred ccCCccccccCh-hhhcCCCCCcEEEccCCccceeeccccccccccCH---HhhcCCCCCCEEEEeecCCCCCCCc
Q 040774 336 LSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASL---VELKNLSRLTTLEINILDAGILPSG 407 (1035)
Q Consensus 336 l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~~~~~~~~~~~ 407 (1035)
+++|. ++.+|. ..++++++|++|++++|.+. .... ..+..+++|+.|+++.|....+|.+
T Consensus 102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCEVT-----------NLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGG-----------TSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCc-----------chHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 99997 788763 34889999999999999886 2222 4688899999999999887666653
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=2.2e-13 Score=158.16 Aligned_cols=161 Identities=22% Similarity=0.262 Sum_probs=122.7
Q ss_pred CccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCC
Q 040774 214 KCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDS 293 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~ 293 (1035)
+++.+++++|.+..+|..+ .++|++|++++ +....+| ..+++|++|++++|.++.+|. +.+ +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~--N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQ--NALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCS--SCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcC--CCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCC
Confidence 6778888888888888765 37888888887 5566777 246888899999988888887 665 888999998
Q ss_pred CCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccc
Q 040774 294 CQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGL 373 (1035)
Q Consensus 294 ~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~ 373 (1035)
|.++.++. .+++|++|++++|.++.+|. .+++|++|++++|. ++.+|. ++ ++|++|++++|.+.
T Consensus 130 N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~------ 193 (571)
T 3cvr_A 130 NQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE------ 193 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS------
T ss_pred CcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC------
Confidence 88888755 68888999999888888886 67888889998887 777876 55 88888888888876
Q ss_pred cccccccCHHhhcC-----CCCCCEEEEeecCCCCCCCc
Q 040774 374 SIERSNASLVELKN-----LSRLTTLEINILDAGILPSG 407 (1035)
Q Consensus 374 ~~~~~~~~~~~l~~-----L~~L~~L~l~~~~~~~~~~~ 407 (1035)
..+. +.. .+.|+.|++++|.+..+|..
T Consensus 194 ------~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~ 225 (571)
T 3cvr_A 194 ------SLPA-VPVRNHHSEETEIFFRCRENRITHIPEN 225 (571)
T ss_dssp ------SCCC-CC--------CCEEEECCSSCCCCCCGG
T ss_pred ------chhh-HHHhhhcccccceEEecCCCcceecCHH
Confidence 1111 222 12238888888887766664
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.4e-13 Score=141.70 Aligned_cols=148 Identities=21% Similarity=0.255 Sum_probs=128.6
Q ss_pred cceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEec
Q 040774 237 LEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSL 313 (1035)
Q Consensus 237 Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L 313 (1035)
-+++++.+ +....+|..+ .++|++|++++|.+..+ |..+..+++|++|+|++|.++.+ ..+.++++|++|++
T Consensus 21 ~~~v~c~~--~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRS--KRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTT--SCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccC--CCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 45677665 6788888765 48999999999999987 77899999999999999999987 55799999999999
Q ss_pred ccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCC
Q 040774 314 QASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLT 392 (1035)
Q Consensus 314 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 392 (1035)
++|.++.+|.. +..+++|++|++++|. ++.+|.. +.++++|++|++++|.+. ......+..+++|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLK-----------SIPHGAFDRLSSLT 162 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCC-----------CCCTTTTTTCTTCC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCC-----------ccCHHHHhCCCCCC
Confidence 99999988766 6899999999999998 8899987 899999999999999987 23335688899999
Q ss_pred EEEEeecCCC
Q 040774 393 TLEINILDAG 402 (1035)
Q Consensus 393 ~L~l~~~~~~ 402 (1035)
.|++++|...
T Consensus 163 ~L~l~~N~~~ 172 (229)
T 3e6j_A 163 HAYLFGNPWD 172 (229)
T ss_dssp EEECTTSCBC
T ss_pred EEEeeCCCcc
Confidence 9999998744
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=2.1e-13 Score=143.55 Aligned_cols=145 Identities=21% Similarity=0.259 Sum_probs=131.1
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++++++.+|.+..++....+++|++|++++ +....+++ |..+++|++|++++|.+..+|.... .+|++|+++
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~--N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSH--NQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCTTCCEEECCS--SCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred CcCcEEECcCCCcccchHHhhCCCCCEEECCC--CccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 58899999999999998656899999999997 66777776 7899999999999999999876444 999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
+|.++.++.++++++|++|++++|.++.+| .++.+++|++|++++|. +..++ . ++++++|++|++++|.+.
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~-~-l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG-G-LTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT-T-STTCCCCCEEEEEEEEEE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH-H-hccCCCCCEEeCCCCccc
Confidence 999999988999999999999999999987 69999999999999998 77773 3 899999999999999876
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.1e-13 Score=138.42 Aligned_cols=146 Identities=25% Similarity=0.352 Sum_probs=119.8
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+.+.+.+ +....+|..+ .++|++|++++|.++.+|. .+..+++|++|++++|.++.+ ..+.++++|++|+++
T Consensus 10 ~~v~c~~--~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYS--QGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCS--SCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecC--CCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 3445544 5666777654 5689999999999998865 478999999999999999877 457899999999999
Q ss_pred cCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 315 ASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
+|.++.+|.. ++.+++|++|++++|. ++.+++..++++++|++|++++|.+. ......+..+++|+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLK-----------SVPDGVFDRLTSLQY 152 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS-----------CCCTTTTTTCTTCCE
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccc-----------eeCHHHhccCCCccE
Confidence 9999988766 6899999999999997 88888877889999999999999876 233344778889999
Q ss_pred EEEeecC
Q 040774 394 LEINILD 400 (1035)
Q Consensus 394 L~l~~~~ 400 (1035)
|++++|.
T Consensus 153 L~l~~N~ 159 (208)
T 2o6s_A 153 IWLHDNP 159 (208)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9998875
No 115
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.48 E-value=2.1e-14 Score=158.31 Aligned_cols=173 Identities=14% Similarity=0.222 Sum_probs=84.0
Q ss_pred CccEEEecCCCCCCCC-CCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCc-cCcccccCCCCCcEEEc
Q 040774 214 KCSRISLYDNNISEIP-QGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLL-SLPSSIHLLTDLRTLCL 291 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~-~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~-~lp~~i~~L~~Lr~L~L 291 (1035)
.++.+++.+|.+...+ ....+++|++|++++ +.....-.+..+..+++|++|++++|.+. ..|..++.+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~-~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSN-SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTT-CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccC-CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 4455555555544322 223455555555554 22111101223455555555555555554 23455555555555555
Q ss_pred CCC-CCCC--c-ccccCCCCCcEEecccC-cCCc--chHhhccCC-cCCEEcccCCc-cc--cccChhhhcCCCCCcEEE
Q 040774 292 DSC-QLED--I-RVIGELRKLEILSLQAS-AIEQ--LPMEIGQLT-QLKLLDLSNCS-KL--KVIAPNVLSNLSQLEELY 360 (1035)
Q Consensus 292 ~~~-~l~~--l-~~i~~L~~L~~L~L~~~-~l~~--lp~~i~~L~-~L~~L~l~~~~-~l--~~lp~~~l~~L~~L~~L~ 360 (1035)
++| .++. + ..+.++++|++|++++| .++. +|..+..++ +|++|++++|. .+ ..+|.. ++++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 555 3442 2 33455555555555555 5552 445555555 55555555553 12 223322 44555555555
Q ss_pred ccCCc-cceeeccccccccccCHHhhcCCCCCCEEEEeec
Q 040774 361 MANCS-IEWEVLGLSIERSNASLVELKNLSRLTTLEINIL 399 (1035)
Q Consensus 361 l~~~~-~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 399 (1035)
+++|. +. ...+..+..+++|++|++++|
T Consensus 229 l~~~~~l~-----------~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 229 LSDSVMLK-----------NDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCTTCC-----------GGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCCcCC-----------HHHHHHHhCCCCCCEeeCCCC
Confidence 55555 22 223334455555555555544
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.6e-13 Score=152.29 Aligned_cols=158 Identities=26% Similarity=0.388 Sum_probs=138.0
Q ss_pred CCCCCC---CCccEEEecCCCCCCCCCCC---CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-c
Q 040774 207 PRQWPD---KKCSRISLYDNNISEIPQGW---ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-S 279 (1035)
Q Consensus 207 ~~~~~~---~~~~~l~l~~~~~~~l~~~~---~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~ 279 (1035)
...+|. ..+++|++++|.+..++... .+++|++|++++ +....+++..|..+++|++|+|++|.+..+|. .
T Consensus 30 l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~--N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 107 (361)
T 2xot_A 30 LPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSH--NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFL 107 (361)
T ss_dssp CSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCC--CcCCccChhhccCCCCCCEEECCCCcCCcCCHHH
Confidence 444443 67899999999999877543 789999999997 77888888889999999999999999998855 6
Q ss_pred ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHhh----ccCCcCCEEcccCCccccccChhhhcCC
Q 040774 280 IHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPMEI----GQLTQLKLLDLSNCSKLKVIAPNVLSNL 353 (1035)
Q Consensus 280 i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i----~~L~~L~~L~l~~~~~l~~lp~~~l~~L 353 (1035)
|..+.+|++|+|++|.++.+ ..|.++++|++|++++|.++.+|..+ ..+++|++|++++|. ++.+|...+..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 186 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKL 186 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHS
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhc
Confidence 89999999999999999876 68999999999999999999999875 679999999999998 999998778888
Q ss_pred CC--CcEEEccCCccc
Q 040774 354 SQ--LEELYMANCSIE 367 (1035)
Q Consensus 354 ~~--L~~L~l~~~~~~ 367 (1035)
.+ |+.|++++|.+.
T Consensus 187 ~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHTTEECCSSCEE
T ss_pred cHhhcceEEecCCCcc
Confidence 87 489999999876
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=1.6e-14 Score=162.46 Aligned_cols=180 Identities=18% Similarity=0.192 Sum_probs=101.9
Q ss_pred CccEEEecCCCCCC-----CCCCC-CCCCcceeeccCC--CCCCCCCChhh------hcCCCCccEEEccCCcCcc----
Q 040774 214 KCSRISLYDNNISE-----IPQGW-ECPQLEFFYNFAP--NNSPLQIPDNI------FIGMPKLKVLDFTRMRLLS---- 275 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~-----l~~~~-~~~~Lr~L~l~~~--~~~~~~i~~~~------f~~~~~Lr~L~Ls~~~i~~---- 275 (1035)
.++++++++|.+.. ++..+ .+++|++|+++++ +.....+|..+ |..+++|++|+|++|.+..
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 56677777766552 22222 4667777777651 11112333332 3566777777777776664
Q ss_pred -CcccccCCCCCcEEEcCCCCCCCc------ccccCC---------CCCcEEecccCcCC--cch---HhhccCCcCCEE
Q 040774 276 -LPSSIHLLTDLRTLCLDSCQLEDI------RVIGEL---------RKLEILSLQASAIE--QLP---MEIGQLTQLKLL 334 (1035)
Q Consensus 276 -lp~~i~~L~~Lr~L~L~~~~l~~l------~~i~~L---------~~L~~L~L~~~~l~--~lp---~~i~~L~~L~~L 334 (1035)
+|..+..+++|++|+|++|.+... ..+..+ ++|++|++++|.+. .+| ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 566666777777777777766421 223333 67777777777665 344 355666777777
Q ss_pred cccCCccccc-----cChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 335 DLSNCSKLKV-----IAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 335 ~l~~~~~l~~-----lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
++++|. ++. +.+..+.++++|++|++++|.+... .....+..+..+++|++|++++|.+
T Consensus 193 ~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~-------g~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 193 KMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL-------GSSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp ECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH-------HHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred ECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH-------HHHHHHHHHccCCCcCEEECCCCCC
Confidence 777765 441 2221256667777777777765300 0012334566666777777766653
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=5.2e-14 Score=158.29 Aligned_cols=142 Identities=16% Similarity=0.105 Sum_probs=95.6
Q ss_pred CCChhhhcCCCCccEEEccCCcCcc-----CcccccCCCCCcEEEcCCCCCCCc-----c-------cccCCCCCcEEec
Q 040774 251 QIPDNIFIGMPKLKVLDFTRMRLLS-----LPSSIHLLTDLRTLCLDSCQLEDI-----R-------VIGELRKLEILSL 313 (1035)
Q Consensus 251 ~i~~~~f~~~~~Lr~L~Ls~~~i~~-----lp~~i~~L~~Lr~L~L~~~~l~~l-----~-------~i~~L~~L~~L~L 313 (1035)
.++.. +..+++|++|++++|.+.. ++..+..+++|++|+|++|.+..+ . .+.++++|++|++
T Consensus 23 ~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 23 SVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp TTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 34443 4677888888888888764 445577888888888888765432 1 2367888888888
Q ss_pred ccCcCCc-----chHhhccCCcCCEEcccCCccccccChhh----hcCC---------CCCcEEEccCCccceeeccccc
Q 040774 314 QASAIEQ-----LPMEIGQLTQLKLLDLSNCSKLKVIAPNV----LSNL---------SQLEELYMANCSIEWEVLGLSI 375 (1035)
Q Consensus 314 ~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~~----l~~L---------~~L~~L~l~~~~~~~~~~~~~~ 375 (1035)
++|.+.. +|..+..+++|++|++++|. ++...... +..+ ++|++|++++|.+...
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~------ 174 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------ 174 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG------
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH------
Confidence 8888775 67778888888888888887 54332222 3333 7888888888877500
Q ss_pred cccccCHHhhcCCCCCCEEEEeecCC
Q 040774 376 ERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 376 ~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
........+..+++|++|++++|.+
T Consensus 175 -~~~~l~~~l~~~~~L~~L~L~~n~l 199 (386)
T 2ca6_A 175 -SMKEWAKTFQSHRLLHTVKMVQNGI 199 (386)
T ss_dssp -GHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred -HHHHHHHHHHhCCCcCEEECcCCCC
Confidence 0011113566777888888877753
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=2.3e-13 Score=129.81 Aligned_cols=127 Identities=24% Similarity=0.267 Sum_probs=98.2
Q ss_pred CCCCccEEEccCCcCc--cCcccccCCCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCc-chHhhccCCcCCEEc
Q 040774 259 GMPKLKVLDFTRMRLL--SLPSSIHLLTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQ-LPMEIGQLTQLKLLD 335 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~-lp~~i~~L~~L~~L~ 335 (1035)
..++|+.|++++|.+. .+|..++.+++|++|++++|.++.+..++++++|++|++++|.++. +|..++.+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3467888888888887 7788888888888888888888877778888888888888888886 777777788888888
Q ss_pred ccCCccccccCh-hhhcCCCCCcEEEccCCccceeeccccccccccCH---HhhcCCCCCCEEEEe
Q 040774 336 LSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASL---VELKNLSRLTTLEIN 397 (1035)
Q Consensus 336 l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~ 397 (1035)
+++|. ++.+|. ..++++++|++|++++|.+. .... ..++.+++|+.|+++
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~-----------~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT-----------NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG-----------GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc-----------chHHHHHHHHHHCCCcccccCC
Confidence 88887 776641 33788888888888888776 2222 457778888877654
No 120
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=1.1e-12 Score=152.14 Aligned_cols=157 Identities=20% Similarity=0.221 Sum_probs=135.8
Q ss_pred CCccEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcC
Q 040774 213 KKCSRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLD 292 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~ 292 (1035)
..++.+++++|.+..+| ..+++|++|++++ +....+|. |.+ +|++|++++|.++.+|. .+++|++|+++
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~--N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACD--NRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCS--SCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccC--CCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 57999999999999999 4579999999998 56666887 444 99999999999999988 68999999999
Q ss_pred CCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCC-------cEEEccCCc
Q 040774 293 SCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQL-------EELYMANCS 365 (1035)
Q Consensus 293 ~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L-------~~L~l~~~~ 365 (1035)
+|.++.++. .+++|++|++++|.++.+|. +. ++|++|++++|. ++.+|. +.. +| ++|++++|.
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSC
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCc
Confidence 999998865 68999999999999999998 66 999999999997 888887 444 67 999999999
Q ss_pred cceeeccccccccccCHHhhcCCCCCCEEEEeecCCC
Q 040774 366 IEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAG 402 (1035)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 402 (1035)
+. ..+..+..+++|+.|++++|...
T Consensus 219 l~------------~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 219 IT------------HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CC------------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred ce------------ecCHHHhcCCCCCEEEeeCCcCC
Confidence 86 45667888999999999999854
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.41 E-value=1.2e-13 Score=153.49 Aligned_cols=127 Identities=13% Similarity=0.195 Sum_probs=60.9
Q ss_pred cceeeccCCCCCCCCCCh----hhhcCCC-CccEEEccCCcCccC-cccccCC-----CCCcEEEcCCCCCCCc--c---
Q 040774 237 LEFFYNFAPNNSPLQIPD----NIFIGMP-KLKVLDFTRMRLLSL-PSSIHLL-----TDLRTLCLDSCQLEDI--R--- 300 (1035)
Q Consensus 237 Lr~L~l~~~~~~~~~i~~----~~f~~~~-~Lr~L~Ls~~~i~~l-p~~i~~L-----~~Lr~L~L~~~~l~~l--~--- 300 (1035)
|++|++++ +....++. ..|.+++ +|++|++++|.+... +..+..+ ++|++|++++|.++.. .
T Consensus 24 L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 24 VTSLDLSL--NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp CCEEECTT--SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred ceEEEccC--CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 55555554 33444443 3445555 566666666555543 3333332 5566666666555432 2
Q ss_pred -cccCC-CCCcEEecccCcCCcchH-h----hcc-CCcCCEEcccCCccccc-----cChhhhcCCC-CCcEEEccCCcc
Q 040774 301 -VIGEL-RKLEILSLQASAIEQLPM-E----IGQ-LTQLKLLDLSNCSKLKV-----IAPNVLSNLS-QLEELYMANCSI 366 (1035)
Q Consensus 301 -~i~~L-~~L~~L~L~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~l~~-----lp~~~l~~L~-~L~~L~l~~~~~ 366 (1035)
.+..+ ++|++|++++|.++..+. . +.. .++|++|++++|. ++. ++.. +..+. +|++|++++|.+
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEECTTSCG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEeeecCCCC
Confidence 13333 556666666655553332 1 222 2456666665554 432 1111 23333 566666665555
Q ss_pred c
Q 040774 367 E 367 (1035)
Q Consensus 367 ~ 367 (1035)
.
T Consensus 180 ~ 180 (362)
T 3goz_A 180 A 180 (362)
T ss_dssp G
T ss_pred c
Confidence 4
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=1.6e-12 Score=129.57 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=100.6
Q ss_pred eeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccC
Q 040774 239 FFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQAS 316 (1035)
Q Consensus 239 ~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~ 316 (1035)
++++.+ +....+|..+ .++|++|++++|.++.+|..|..+++|++|++++|.++.+ ..|.++++|++|++++|
T Consensus 14 ~l~~~~--~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSN--KGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTT--SCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCC--CCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 444443 4555666654 3578889999999988888888999999999999998877 56889999999999999
Q ss_pred cCCcchH-hhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 317 AIEQLPM-EIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 317 ~l~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
.++.+|. .+..+++|++|++++|. ++.+|++.+..+++|++|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 8887765 58889999999999987 88888877888999999999988875
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=9.5e-14 Score=154.37 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=78.8
Q ss_pred hhhcCCCCccEEEccCCcCccCc-----ccccCCC-CCcEEEcCCCCCCCc--ccccCC-----CCCcEEecccCcCCcc
Q 040774 255 NIFIGMPKLKVLDFTRMRLLSLP-----SSIHLLT-DLRTLCLDSCQLEDI--RVIGEL-----RKLEILSLQASAIEQL 321 (1035)
Q Consensus 255 ~~f~~~~~Lr~L~Ls~~~i~~lp-----~~i~~L~-~Lr~L~L~~~~l~~l--~~i~~L-----~~L~~L~L~~~~l~~l 321 (1035)
.++...++|++||+++|.+...+ +.+..++ +|++|++++|.+... ..+..+ ++|++|++++|.++..
T Consensus 16 ~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK 95 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH
Confidence 34444555777777777766553 4556666 677777777766543 344443 6677777777766633
Q ss_pred -hHh----hccC-CcCCEEcccCCccccccChhhhc----C-CCCCcEEEccCCccceeeccccccccccCHHhhcCCC-
Q 040774 322 -PME----IGQL-TQLKLLDLSNCSKLKVIAPNVLS----N-LSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLS- 389 (1035)
Q Consensus 322 -p~~----i~~L-~~L~~L~l~~~~~l~~lp~~~l~----~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~- 389 (1035)
+.. +..+ ++|++|++++|. ++..+...++ . .++|++|++++|.+.... .......+..++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-------~~~l~~~l~~~~~ 167 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKS-------SDELIQILAAIPA 167 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSC-------HHHHHHHHHTSCT
T ss_pred HHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHH-------HHHHHHHHhcCCc
Confidence 232 3333 667777777766 5555543332 2 246777777776665100 011122334444
Q ss_pred CCCEEEEeecCCCC
Q 040774 390 RLTTLEINILDAGI 403 (1035)
Q Consensus 390 ~L~~L~l~~~~~~~ 403 (1035)
+|++|++++|.+..
T Consensus 168 ~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 168 NVNSLNLRGNNLAS 181 (362)
T ss_dssp TCCEEECTTSCGGG
T ss_pred cccEeeecCCCCch
Confidence 67777777666543
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=7e-13 Score=130.36 Aligned_cols=130 Identities=15% Similarity=0.231 Sum_probs=90.1
Q ss_pred hcCCCCccEEEccCCcCccCcccccCCC-CCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhh-ccCCcCCEE
Q 040774 257 FIGMPKLKVLDFTRMRLLSLPSSIHLLT-DLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEI-GQLTQLKLL 334 (1035)
Q Consensus 257 f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~-~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i-~~L~~L~~L 334 (1035)
|..+.+|++|++++|.+..+|. +..+. +|++|++++|.++.++.++++++|++|++++|.++.+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4566777777777777777754 44444 77777777777776677777777777777777777776554 777777777
Q ss_pred cccCCccccccCh-hhhcCCCCCcEEEccCCccceeeccccccccccCHH----hhcCCCCCCEEEEeecC
Q 040774 335 DLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLV----ELKNLSRLTTLEINILD 400 (1035)
Q Consensus 335 ~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~~L~l~~~~ 400 (1035)
++++|. ++.+|. ..++++++|++|++++|.+. ..+. .+..+++|+.|+++.+.
T Consensus 94 ~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~------------~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT------------NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG------------GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC------------CcHhHHHHHHHHCCccceeCCCcCC
Confidence 777776 666665 23677777777777777765 1122 36677777777777664
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=9.1e-13 Score=128.56 Aligned_cols=128 Identities=21% Similarity=0.245 Sum_probs=79.6
Q ss_pred CCcceeeccCCCCCCC--CCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCC-c-ccccCCCCCcE
Q 040774 235 PQLEFFYNFAPNNSPL--QIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLED-I-RVIGELRKLEI 310 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~--~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~ 310 (1035)
++|++|++.+ +... .+|.. |..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++++++|++
T Consensus 24 ~~L~~L~l~~--n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDN--CKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCS--CBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCC--CCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3445555544 2222 44443 45666677777777766666 566667777777777777665 3 34445677777
Q ss_pred EecccCcCCcch--HhhccCCcCCEEcccCCccccccCh---hhhcCCCCCcEEEccCCccc
Q 040774 311 LSLQASAIEQLP--MEIGQLTQLKLLDLSNCSKLKVIAP---NVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 311 L~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l~~~~~~ 367 (1035)
|++++|.++.+| ..+..+++|++|++++|. +..+|. ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777776655 556677777777777765 666665 34667777777777666554
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1.1e-12 Score=125.10 Aligned_cols=124 Identities=23% Similarity=0.273 Sum_probs=90.6
Q ss_pred CCcceeeccCCCCCC-CCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCC-c-ccccCCCCCcEE
Q 040774 235 PQLEFFYNFAPNNSP-LQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLED-I-RVIGELRKLEIL 311 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~-~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~-l-~~i~~L~~L~~L 311 (1035)
++++.|++.+ +... +.+|. .|..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..++++++|++|
T Consensus 17 ~~l~~L~l~~-n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDN-SRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTT-CBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccC-CcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4455555555 2211 24554 356788888888888888777 677888888888888888876 5 555668888888
Q ss_pred ecccCcCCcch--HhhccCCcCCEEcccCCccccccCh---hhhcCCCCCcEEEcc
Q 040774 312 SLQASAIEQLP--MEIGQLTQLKLLDLSNCSKLKVIAP---NVLSNLSQLEELYMA 362 (1035)
Q Consensus 312 ~L~~~~l~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l~ 362 (1035)
++++|.++.+| ..++.+++|++|++++|. ++.+|+ ..++.+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 88888888765 678888888888888886 777776 457888888888765
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.36 E-value=2.2e-12 Score=128.64 Aligned_cols=123 Identities=22% Similarity=0.248 Sum_probs=72.8
Q ss_pred eeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCccc--ccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 239 FFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSS--IHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 239 ~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~--i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
++++++ +....+|..++ .+|++|++++|.+..++.. ++.+++|++|++++|.++.+ ..++++++|++|+++
T Consensus 12 ~l~~s~--~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 12 TVDCTG--RGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEECTT--SCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred EEEcCC--CCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 344443 33444554432 2566666666666666442 56666666666666666654 456666666666666
Q ss_pred cCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 315 ASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 315 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
+|.++.+|.. +..+++|++|++++|. ++.+++..++.+++|++|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666655443 5666666666666665 55554444666666666666666654
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.1e-12 Score=158.49 Aligned_cols=152 Identities=21% Similarity=0.308 Sum_probs=102.0
Q ss_pred CCccEEEecCCCCCCCCCCC-CCCCcceeeccCC---CCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcE
Q 040774 213 KKCSRISLYDNNISEIPQGW-ECPQLEFFYNFAP---NNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRT 288 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~---~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~ 288 (1035)
.+++++++.++.+...+... ....|+.+.+... .+.. .+++..|..++.|++|+|++|.+..+|..+.++++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM-VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce-ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 57889999888887665433 4444554444331 1222 36677788999999999999999999999999999999
Q ss_pred EEcCCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 289 LCLDSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 289 L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
|+|++|.++.+ ..|++|++|++|+|++|.++.+|..++.|++|++|+|++|. ++.+|.. +++|++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 99999999977 78999999999999999999999999999999999999997 8899988 999999999999999987
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=2.1e-12 Score=128.75 Aligned_cols=125 Identities=23% Similarity=0.327 Sum_probs=112.1
Q ss_pred cEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-c--cccCCCCCcEEecccCcCCcc-hHhhccCCcCCEEcccCC
Q 040774 264 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-R--VIGELRKLEILSLQASAIEQL-PMEIGQLTQLKLLDLSNC 339 (1035)
Q Consensus 264 r~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~--~i~~L~~L~~L~L~~~~l~~l-p~~i~~L~~L~~L~l~~~ 339 (1035)
++++++++.+..+|..+.. +|++|++++|.++.+ . .++++++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 7899999999999998765 999999999999987 3 389999999999999999977 678999999999999999
Q ss_pred ccccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCC
Q 040774 340 SKLKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAG 402 (1035)
Q Consensus 340 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 402 (1035)
. ++.+++..++++++|++|++++|.+. ...+..+..+++|++|++++|...
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 K-IKEISNKMFLGLHQLKTLNLYDNQIS-----------CVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp C-CCEECSSSSTTCTTCCEEECCSSCCC-----------EECTTSSTTCTTCCEEECTTCCBC
T ss_pred c-CCccCHHHhcCCCCCCEEECCCCcCC-----------eeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8 88888877899999999999999987 345567889999999999998743
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=7.7e-12 Score=124.59 Aligned_cols=124 Identities=26% Similarity=0.347 Sum_probs=110.7
Q ss_pred cEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCCcc
Q 040774 264 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNCSK 341 (1035)
Q Consensus 264 r~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~~~ 341 (1035)
++++++++.+..+|..+. .+|++|++++|.++.+ ..+.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 689999999999998775 5899999999999987 799999999999999999998875 58999999999999998
Q ss_pred ccccChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 342 LKVIAPNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 342 l~~lp~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
++.+++..++++++|++|++++|.+. ......+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-----------~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-----------VVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-----------BCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-----------eeChhhhhcCccccEEEeCCCCe
Confidence 89998877999999999999999987 23334578899999999998863
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=3.1e-12 Score=125.72 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=99.9
Q ss_pred CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-cc-ccCCCCCc
Q 040774 232 WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RV-IGELRKLE 309 (1035)
Q Consensus 232 ~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~-i~~L~~L~ 309 (1035)
..+.+|+.|++.+ +....++. +....++|++|++++|.++.+ +.++.+++|++|++++|.++.+ +. ++.+++|+
T Consensus 16 ~~~~~L~~L~l~~--n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRG--YKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTT--SCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeC--CCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3556677777776 34445543 323334888888888888887 6788888888888888888876 33 48888899
Q ss_pred EEecccCcCCcchH--hhccCCcCCEEcccCCccccccChh---hhcCCCCCcEEEccCCccc
Q 040774 310 ILSLQASAIEQLPM--EIGQLTQLKLLDLSNCSKLKVIAPN---VLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 310 ~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l~~~~~~ 367 (1035)
+|++++|.++.+|. .++.+++|++|++++|. +..+|.. .++.+++|++|++++|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999888888887 78888889999998887 7777764 4788888999988887754
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.27 E-value=2.9e-11 Score=118.97 Aligned_cols=117 Identities=28% Similarity=0.459 Sum_probs=80.2
Q ss_pred CCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchH
Q 040774 247 NSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPM 323 (1035)
Q Consensus 247 ~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~ 323 (1035)
+....+|..+ .++|++|++++|.+..+|. .++.+++|++|++++|.++.+ ..++++++|++|++++|.++.+|.
T Consensus 17 ~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 93 (177)
T 2o6r_A 17 KGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN 93 (177)
T ss_dssp SCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH
Confidence 3444555433 3567777777777776654 456777777777777777665 336677777777777777776665
Q ss_pred h-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 324 E-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 324 ~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
. +..+++|++|++++|. ++.+|+..+.++++|++|++++|.+.
T Consensus 94 ~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 94 GVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 4 5777777777777776 67777765677778888888777765
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.26 E-value=5e-13 Score=134.28 Aligned_cols=155 Identities=20% Similarity=0.219 Sum_probs=116.3
Q ss_pred CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEecc
Q 040774 236 QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEILSLQ 314 (1035)
Q Consensus 236 ~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~ 314 (1035)
.++...+.+.......+|. .|..+++|++|++++|.+..+| .+..+++|++|++++|.++.+ ..++.+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3444444442234555655 4688999999999999999998 899999999999999998877 566778999999999
Q ss_pred cCcCCcchHhhccCCcCCEEcccCCccccccCh-hhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCE
Q 040774 315 ASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAP-NVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTT 393 (1035)
Q Consensus 315 ~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 393 (1035)
+|.++.+| .++.+++|++|++++|. +..++. ..++++++|++|++++|.+........ .........+..+++|+.
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN-ATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT-THHHHHHHHHHHCSSCSE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcccccccccc-chHHHHHHHHHhCCCcEE
Confidence 99999988 68999999999999987 777665 348899999999999998761100000 000111233778889998
Q ss_pred EE
Q 040774 394 LE 395 (1035)
Q Consensus 394 L~ 395 (1035)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 86
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4.2e-11 Score=117.78 Aligned_cols=122 Identities=22% Similarity=0.366 Sum_probs=107.7
Q ss_pred cEEEecCCCCCCCCCCCCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCC
Q 040774 216 SRISLYDNNISEIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSC 294 (1035)
Q Consensus 216 ~~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~ 294 (1035)
+.+++.++.+..+|.... ++|++|++.+ +....++...|..+++|++|++++|.+..+|. .++.+++|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~~-~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP-SSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTCC-TTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCCCC-CCCcEEEeCC--CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 567888888888886543 7999999997 56778888888999999999999999999865 4789999999999999
Q ss_pred CCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCc
Q 040774 295 QLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCS 340 (1035)
Q Consensus 295 ~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 340 (1035)
.++.+ ..++++++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 99987 4578999999999999999999877 5889999999999997
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.23 E-value=1.8e-12 Score=156.80 Aligned_cols=131 Identities=23% Similarity=0.273 Sum_probs=110.6
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEE
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEIL 311 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L 311 (1035)
.+++|+.|++++ +....+|..+| ++++|++|+|++|.++.+|..|++|++|++|+|++|.++.+ ..|++|.+|++|
T Consensus 222 ~l~~L~~L~Ls~--n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSN--LQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTT--SCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCC--CCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 788999999997 66678998887 89999999999999999999999999999999999999987 789999999999
Q ss_pred ecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCC-CcEEEccCCccc
Q 040774 312 SLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQ-LEELYMANCSIE 367 (1035)
Q Consensus 312 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~-L~~L~l~~~~~~ 367 (1035)
+|++|.++.+|..|++|++|++|+|++|. +...++..++.+.. +..|++.+|.+.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQFLKILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCc-cCCCChHHHhhcchhhhHHhhccCccc
Confidence 99999999999999999999999999998 66555554544321 123556666654
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=3.4e-11 Score=140.78 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=106.7
Q ss_pred CccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc-ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCc
Q 040774 262 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI-RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCS 340 (1035)
Q Consensus 262 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l-~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~ 340 (1035)
.|++|++++|.++.+|. ++.+++|++|+|++|.++.+ ..++++++|++|++++|.++.+| .++.+++|++|++++|.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 59999999999999997 99999999999999999987 88999999999999999999999 89999999999999998
Q ss_pred ccccc--ChhhhcCCCCCcEEEccCCccceeeccccccccccCHHhhcCCCCCCEEEE
Q 040774 341 KLKVI--APNVLSNLSQLEELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEI 396 (1035)
Q Consensus 341 ~l~~l--p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 396 (1035)
++.+ |.. ++++++|++|++++|.+...+ .....-+..+++|+.|++
T Consensus 520 -l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 -LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEE--------GIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CCSSSTTGG-GGGCTTCCEEECTTSGGGGSS--------SCTTHHHHHCTTCSEEEC
T ss_pred -CCCCCCcHH-HhcCCCCCEEEecCCcCCCCc--------cHHHHHHHHCcccCccCC
Confidence 8888 555 999999999999999987211 112233455889998863
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=4.8e-11 Score=139.47 Aligned_cols=188 Identities=20% Similarity=0.238 Sum_probs=143.2
Q ss_pred CccEEEecCCCCCCCCCCC-CCCCcceeeccCCCC------------CCCCCChhhhcCCCCccEEE-ccCCcCccCcc-
Q 040774 214 KCSRISLYDNNISEIPQGW-ECPQLEFFYNFAPNN------------SPLQIPDNIFIGMPKLKVLD-FTRMRLLSLPS- 278 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~------------~~~~i~~~~f~~~~~Lr~L~-Ls~~~i~~lp~- 278 (1035)
.++++++++|.+..+|..+ .+++|+.|++.. +. .....++..+..+++|+.|+ ++.+.+..++.
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~-n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhcccc-chhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence 4445556666665566554 566777777643 11 02334455567888999998 66664443322
Q ss_pred -----cccC--CCCCcEEEcCCCCCCCcccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhc
Q 040774 279 -----SIHL--LTDLRTLCLDSCQLEDIRVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLS 351 (1035)
Q Consensus 279 -----~i~~--L~~Lr~L~L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~ 351 (1035)
.+.. ...|++|++++|.++.++.++++++|++|++++|.++.+|..++.+++|++|++++|. ++.+| . ++
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cC
Confidence 1111 1259999999999999977999999999999999999999999999999999999998 88888 4 99
Q ss_pred CCCCCcEEEccCCccceeeccccccccccC-HHhhcCCCCCCEEEEeecCCCCCCCcc-----ccccccEE
Q 040774 352 NLSQLEELYMANCSIEWEVLGLSIERSNAS-LVELKNLSRLTTLEINILDAGILPSGF-----FSRKLERY 416 (1035)
Q Consensus 352 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~l~~L~~L~~L~l~~~~~~~~~~~~-----~~~~L~~l 416 (1035)
++++|++|++++|.+. ... +..++.+++|+.|++++|.+...|... .+++|+.|
T Consensus 506 ~l~~L~~L~Ls~N~l~-----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQ-----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TCSSCCEEECCSSCCC-----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCcEEECCCCCCC-----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 9999999999999987 333 788999999999999999987777653 35666665
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.17 E-value=9.2e-11 Score=114.45 Aligned_cols=101 Identities=30% Similarity=0.499 Sum_probs=82.2
Q ss_pred cEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCc
Q 040774 264 KVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCS 340 (1035)
Q Consensus 264 r~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~ 340 (1035)
++++++++.+..+|..+. .+|++|+|++|.++.+ ..|+++++|++|+|++|.++.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 678888888888887765 6888888888888766 5678888888888888888888776 4788888888888887
Q ss_pred cccccChhhhcCCCCCcEEEccCCccc
Q 040774 341 KLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 341 ~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
++.+|+..++++++|++|++++|.+.
T Consensus 93 -l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 -LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp -CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred -cceeCHHHhccccCCCEEEeCCCCcc
Confidence 77888776888888888888888765
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.16 E-value=9.9e-11 Score=113.86 Aligned_cols=103 Identities=28% Similarity=0.413 Sum_probs=87.1
Q ss_pred CccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccC
Q 040774 262 KLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSN 338 (1035)
Q Consensus 262 ~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~ 338 (1035)
..++++++++.++.+|..+. .+|++|+|++|.++.+ ..|+++++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35788899998888888774 7889999999988876 5688899999999999988888776 58899999999999
Q ss_pred CccccccChhhhcCCCCCcEEEccCCccc
Q 040774 339 CSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 339 ~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
|. ++.+|++.++++++|++|++++|.+.
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 87 88888877888999999999998775
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=1.2e-12 Score=131.55 Aligned_cols=147 Identities=18% Similarity=0.223 Sum_probs=121.0
Q ss_pred CccEEEecCC--CCCCCCCCC-CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEE
Q 040774 214 KCSRISLYDN--NISEIPQGW-ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLC 290 (1035)
Q Consensus 214 ~~~~l~l~~~--~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~ 290 (1035)
.++...+.+. .+..+|..+ .+++|++|++++ +....+| .|.++++|++|++++|.+..+|..+..+++|++|+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~--n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALST--NNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSE--EEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCC--CCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 4555555544 455565444 789999999997 5566677 47899999999999999999999888899999999
Q ss_pred cCCCCCCCcccccCCCCCcEEecccCcCCcchH--hhccCCcCCEEcccCCccccccCh----------hhhcCCCCCcE
Q 040774 291 LDSCQLEDIRVIGELRKLEILSLQASAIEQLPM--EIGQLTQLKLLDLSNCSKLKVIAP----------NVLSNLSQLEE 358 (1035)
Q Consensus 291 L~~~~l~~l~~i~~L~~L~~L~L~~~~l~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~----------~~l~~L~~L~~ 358 (1035)
+++|.++.++.++++++|++|++++|.++.+|. .+..+++|++|++++|. +...++ ..+.++++|++
T Consensus 100 L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 100 ISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEE
Confidence 999999999889999999999999999998875 78999999999999997 544322 23788999999
Q ss_pred EEccCCccc
Q 040774 359 LYMANCSIE 367 (1035)
Q Consensus 359 L~l~~~~~~ 367 (1035)
|+ ++.+.
T Consensus 179 Ld--~~~i~ 185 (198)
T 1ds9_A 179 LD--GMPVD 185 (198)
T ss_dssp EC--CGGGT
T ss_pred EC--CcccC
Confidence 97 55544
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=5.9e-10 Score=108.70 Aligned_cols=102 Identities=21% Similarity=0.281 Sum_probs=65.8
Q ss_pred eeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEeccc
Q 040774 239 FFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQA 315 (1035)
Q Consensus 239 ~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 315 (1035)
.+++.+ +....+|..+ .++|++|++++|.+..+ |..|+++++|++|+|++|.++.+ ..+.++++|++|++++
T Consensus 16 ~l~~~~--n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 16 LVNCQN--IRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp EEECCS--SCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEeCC--CCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 444443 4445555544 25667777777777766 45667777777777777777665 3356777777777777
Q ss_pred CcCCcchHh-hccCCcCCEEcccCCccccccC
Q 040774 316 SAIEQLPME-IGQLTQLKLLDLSNCSKLKVIA 346 (1035)
Q Consensus 316 ~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp 346 (1035)
|.++.+|.. +..+++|++|++++|. +...+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 777777665 6777777777777776 44443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.00 E-value=1.6e-09 Score=105.26 Aligned_cols=98 Identities=27% Similarity=0.311 Sum_probs=60.2
Q ss_pred ceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 238 EFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 238 r~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+++++++ +....+|..+ .++|++|++++|.++.+ |..|..+++|++|+|++|.++.+ ..+.++++|++|+++
T Consensus 12 ~~l~~s~--n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSG--KSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTT--SCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCC--CCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3444443 3444455443 25566666666666666 44566666666666666666655 335666677777777
Q ss_pred cCcCCcchHh-hccCCcCCEEcccCCc
Q 040774 315 ASAIEQLPME-IGQLTQLKLLDLSNCS 340 (1035)
Q Consensus 315 ~~~l~~lp~~-i~~L~~L~~L~l~~~~ 340 (1035)
+|.++.+|.. +..+++|++|++++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 7766666654 6667777777777665
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1e-09 Score=119.98 Aligned_cols=156 Identities=19% Similarity=0.142 Sum_probs=86.2
Q ss_pred CCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCC----CCc--cccc---
Q 040774 234 CPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQL----EDI--RVIG--- 303 (1035)
Q Consensus 234 ~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l----~~l--~~i~--- 303 (1035)
+++|+.+.+.. ....|++.+|..+++|+.|++++|.+..+ +..|..+.++.++.+..... ..+ ..+.
T Consensus 100 ~~~L~~l~L~~---~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE---KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT---TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc---cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77777777763 55667777777777788888877777666 34566666666665544210 111 0010
Q ss_pred -----------------------------------------------CCCCCcEEecccCcCCcchHh-hccCCcCCEEc
Q 040774 304 -----------------------------------------------ELRKLEILSLQASAIEQLPME-IGQLTQLKLLD 335 (1035)
Q Consensus 304 -----------------------------------------------~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~ 335 (1035)
.+.+|+++++++|.++.+|.. +..+++|+.++
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 144555555555555555544 55555566665
Q ss_pred ccCCccccccChhhhcCCCCCc-EEEccCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCCCCCCC
Q 040774 336 LSNCSKLKVIAPNVLSNLSQLE-ELYMANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDAGILPS 406 (1035)
Q Consensus 336 l~~~~~l~~lp~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 406 (1035)
+.++ ++.++...+.++.+|+ .+++.+ .+. ......+.++++|+.++++.+.+..++.
T Consensus 257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~-----------~I~~~aF~~c~~L~~l~l~~n~i~~I~~ 314 (329)
T 3sb4_A 257 LPHN--LKTIGQRVFSNCGRLAGTLELPA-SVT-----------AIEFGAFMGCDNLRYVLATGDKITTLGD 314 (329)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEEEECT-TCC-----------EECTTTTTTCTTEEEEEECSSCCCEECT
T ss_pred CCcc--cceehHHHhhCChhccEEEEEcc-cce-----------EEchhhhhCCccCCEEEeCCCccCccch
Confidence 5553 5555555555555555 555554 222 1222345555555555555555444443
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.90 E-value=4.3e-09 Score=114.94 Aligned_cols=96 Identities=10% Similarity=0.204 Sum_probs=71.4
Q ss_pred CCccEEEecCCCCC--CCCCCCCCCCcceeeccCCCCCCCCCChhhhcC--------CCCccEEEccCCcCccCc-cccc
Q 040774 213 KKCSRISLYDNNIS--EIPQGWECPQLEFFYNFAPNNSPLQIPDNIFIG--------MPKLKVLDFTRMRLLSLP-SSIH 281 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~--~l~~~~~~~~Lr~L~l~~~~~~~~~i~~~~f~~--------~~~Lr~L~Ls~~~i~~lp-~~i~ 281 (1035)
.+++.++|++|.+. ..+.. .++.++.+.... ..||+.+|.+ +.+|+.|++.. .++.++ .+|.
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~-----~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMA-----NFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSS-SSGGGCCEEECT-----TEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred ccCeEEecCcceeEEecCccc-cccccccccccc-----cccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 47888999998877 22211 122233443332 2788899999 99999999999 899885 4799
Q ss_pred CCCCCcEEEcCCCCCCCc--ccccCCCCCcEEeccc
Q 040774 282 LLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQA 315 (1035)
Q Consensus 282 ~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 315 (1035)
++.+|+.|++.+|.+..+ ..|....++.++.+..
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 999999999999998766 6777887888777655
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.78 E-value=2.9e-07 Score=102.46 Aligned_cols=121 Identities=18% Similarity=0.194 Sum_probs=81.9
Q ss_pred CCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCcc-cccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEE
Q 040774 235 PQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLPS-SIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEIL 311 (1035)
Q Consensus 235 ~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~-~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L 311 (1035)
..++.+.+. +....|+..+|..+ +|+.+++..+ +..+++ +|.+ .+|+.+.+.. .++.+ ..|.++.+|+.+
T Consensus 113 ~~l~~i~ip---~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILP---NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECC---TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEEC---CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 445555554 34566677777765 6777777665 666643 5555 3677777765 55555 567777888888
Q ss_pred ecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCC
Q 040774 312 SLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 364 (1035)
Q Consensus 312 ~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 364 (1035)
+++.|.++.+|...-...+|+.+.+..+ ++.++...+.++.+|+.+.+..+
T Consensus 186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 186 DLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp ECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred ecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence 8887777777766444677888887743 77777777777888888877654
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=1.3e-08 Score=112.11 Aligned_cols=100 Identities=24% Similarity=0.282 Sum_probs=74.3
Q ss_pred EEEccCC-cCccCcccccCCCCCcEEEcCC-CCCCCc--ccccCCCCCcEEecccCcCCcchH-hhccCCcCCEEcccCC
Q 040774 265 VLDFTRM-RLLSLPSSIHLLTDLRTLCLDS-CQLEDI--RVIGELRKLEILSLQASAIEQLPM-EIGQLTQLKLLDLSNC 339 (1035)
Q Consensus 265 ~L~Ls~~-~i~~lp~~i~~L~~Lr~L~L~~-~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~-~i~~L~~L~~L~l~~~ 339 (1035)
.++++++ .+..+|. |..+.+|++|+|++ |.++.+ ..|++|.+|++|+|++|.++.+|. .|++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3477776 7777777 77777788888875 777765 457788888888888888876654 4678888888888887
Q ss_pred ccccccChhhhcCCCCCcEEEccCCccc
Q 040774 340 SKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 340 ~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
. +..+|+..+..+. |++|++.+|.+.
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred c-cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6 7777777555555 888888887765
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.67 E-value=3.7e-07 Score=101.63 Aligned_cols=232 Identities=13% Similarity=0.150 Sum_probs=155.4
Q ss_pred CccEEEecCCCCCCCCCC-CCCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEc
Q 040774 214 KCSRISLYDNNISEIPQG-WECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCL 291 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L 291 (1035)
.+..+.+.+ .+..++.. +.-.+|+.+.+.. ....|+..+|..+ +|+.+++.. .+..++ .+|.++.+|+.+++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~---~i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNSQIAKVVLNE---GLKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTCCCSEEECCT---TCCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CccEEEECC-ccCEehHhhcccCCccEEEeCC---CccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 444555443 23444433 2224788888764 3778888888885 699999986 677774 57889999999999
Q ss_pred CCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccce
Q 040774 292 DSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIEW 368 (1035)
Q Consensus 292 ~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~~ 368 (1035)
.+|.++.+ ..|. ..+|+.+.+.. .++.++.. +.++.+|+.+++..+ ++.++...+.+ .+|+.+.+..+ +.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~- 260 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VT- 260 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CC-
T ss_pred CCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-cc-
Confidence 99888877 4444 58899999985 47777654 788899999999873 78888887877 78999988543 32
Q ss_pred eeccccccccccCHHhhcCCCCCCEEEEeecCCC-----CCCCccccccccEEEEEEccccccCCcccccchhhhccCCc
Q 040774 369 EVLGLSIERSNASLVELKNLSRLTTLEINILDAG-----ILPSGFFSRKLERYRIVVGDTWDRFDKYKTRRTLKLKLNSR 443 (1035)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~-----~~~~~~~~~~L~~l~~~~~~~~~~~~~~~~~~~l~l~~~~~ 443 (1035)
......+.++++|+.+.+..+... .++..
T Consensus 261 ----------~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~------------------------------------ 294 (401)
T 4fdw_A 261 ----------NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPY------------------------------------ 294 (401)
T ss_dssp ----------EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTT------------------------------------
T ss_pred ----------EEChhHhhCCCCCCEEEeCCccccCCcccEECHH------------------------------------
Confidence 233456788899999998776532 12211
Q ss_pred eeeccccCccccceeecccccCccccccccCccccCCccEEEeecCCccceeccCCccccCcCcccceeecccc
Q 040774 444 ICLGEWRGMKNVEYLCLDELPGLTNVLHDLDGEGFAELKHLNVQNNSNFLCIVDPLQVRCGAFPMLESVVLQSL 517 (1035)
Q Consensus 444 i~~~~~~~l~~L~~L~L~~~~~~~~~l~~l~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~~ 517 (1035)
.+.++++|+.+.+.+ .+.. ++.-.+.++++|+.+.|... ++.+... .+..+ +|+.+.+.+.
T Consensus 295 ----aF~~c~~L~~l~l~~--~i~~-I~~~aF~~c~~L~~l~lp~~--l~~I~~~---aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 295 ----CLEGCPKLARFEIPE--SIRI-LGQGLLGGNRKVTQLTIPAN--VTQINFS---AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ----TTTTCTTCCEECCCT--TCCE-ECTTTTTTCCSCCEEEECTT--CCEECTT---SSSSS-CCCEEEECCS
T ss_pred ----HhhCCccCCeEEeCC--ceEE-EhhhhhcCCCCccEEEECcc--ccEEcHH---hCCCC-CCCEEEEcCC
Confidence 256667777777763 2222 22223356778888888543 4455322 34445 7888887763
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.65 E-value=4.1e-09 Score=116.31 Aligned_cols=153 Identities=13% Similarity=0.062 Sum_probs=67.9
Q ss_pred CCccEEEecCCCCCCCC-----CCC--CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-----cccc
Q 040774 213 KKCSRISLYDNNISEIP-----QGW--ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-----PSSI 280 (1035)
Q Consensus 213 ~~~~~l~l~~~~~~~l~-----~~~--~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-----p~~i 280 (1035)
..++.+++++|.+.... ..+ ..++|++|++++ +.....-...++..+++|+.|+|++|.+... ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLAS-CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTT-CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecC-CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35677888877765211 111 124555555554 2111111112222334555555555555421 1111
Q ss_pred -cCCCCCcEEEcCCCCCCC-----c-ccccCCCCCcEEecccCcCCc-----chHhhccCCcCCEEcccCCccccccChh
Q 040774 281 -HLLTDLRTLCLDSCQLED-----I-RVIGELRKLEILSLQASAIEQ-----LPMEIGQLTQLKLLDLSNCSKLKVIAPN 348 (1035)
Q Consensus 281 -~~L~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~ 348 (1035)
....+|++|+|++|.++. + ..+..+++|++|+|++|.+.. ++..+...++|++|++++|. ++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHH
Confidence 123455555555555442 1 233445555555555555442 23334444555555555554 3322111
Q ss_pred ----hhcCCCCCcEEEccCCccc
Q 040774 349 ----VLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 349 ----~l~~L~~L~~L~l~~~~~~ 367 (1035)
.+...++|++|++++|.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHhCCCCCEEeccCCCCC
Confidence 1223445555555555543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.59 E-value=8.3e-08 Score=105.69 Aligned_cols=98 Identities=21% Similarity=0.178 Sum_probs=75.4
Q ss_pred eeccCCCCCCCCCChhhhcCCCCccEEEccC-CcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEeccc
Q 040774 240 FYNFAPNNSPLQIPDNIFIGMPKLKVLDFTR-MRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQA 315 (1035)
Q Consensus 240 L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~-~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~ 315 (1035)
+++.+ ++....+|. +..+.+|++|+|++ |.+..+| ..|+.|.+|++|+|++|.++.+ ..|++|++|++|+|++
T Consensus 13 v~~~~-~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTR-DGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCS-SCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCC-CCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 44444 225667777 67888888888885 8888875 5788888888888888888866 5678888888888888
Q ss_pred CcCCcchHhhccCCcCCEEcccCCc
Q 040774 316 SAIEQLPMEIGQLTQLKLLDLSNCS 340 (1035)
Q Consensus 316 ~~l~~lp~~i~~L~~L~~L~l~~~~ 340 (1035)
|.++.+|..+.....|++|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 8888888765444448888888876
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=1.1e-08 Score=112.92 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=108.7
Q ss_pred CCCcceeeccCCCCCCCCCChhhh----c-CCCCccEEEccCCcCcc--CcccccCCCCCcEEEcCCCCCCCc--ccc--
Q 040774 234 CPQLEFFYNFAPNNSPLQIPDNIF----I-GMPKLKVLDFTRMRLLS--LPSSIHLLTDLRTLCLDSCQLEDI--RVI-- 302 (1035)
Q Consensus 234 ~~~Lr~L~l~~~~~~~~~i~~~~f----~-~~~~Lr~L~Ls~~~i~~--lp~~i~~L~~Lr~L~L~~~~l~~l--~~i-- 302 (1035)
.++|++|++++ +.........| . ..++|++|+|++|.+.. +..-...+.+|++|+|++|.+... ..+
T Consensus 71 ~~~L~~L~Ls~--n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAG--VRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTT--SCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecC--CCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 35788899887 33332222212 2 33789999999998863 222223456889999999988743 333
Q ss_pred ---cCCCCCcEEecccCcCCc-----chHhhccCCcCCEEcccCCccccccC----hhhhcCCCCCcEEEccCCccceee
Q 040774 303 ---GELRKLEILSLQASAIEQ-----LPMEIGQLTQLKLLDLSNCSKLKVIA----PNVLSNLSQLEELYMANCSIEWEV 370 (1035)
Q Consensus 303 ---~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~~lp----~~~l~~L~~L~~L~l~~~~~~~~~ 370 (1035)
....+|++|++++|.++. ++..+..+++|++|++++|. ++... ...+...++|++|++++|.+...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~- 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT- 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH-
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH-
Confidence 346789999999998864 55566788899999999987 65432 12266778999999999987610
Q ss_pred ccccccccccCHHhhcCCCCCCEEEEeecCCCC
Q 040774 371 LGLSIERSNASLVELKNLSRLTTLEINILDAGI 403 (1035)
Q Consensus 371 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 403 (1035)
........+...++|++|++++|.++.
T Consensus 227 ------g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 227 ------AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ------HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ------HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 001233456677889999999988654
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.30 E-value=3.1e-07 Score=87.29 Aligned_cols=92 Identities=12% Similarity=0.179 Sum_probs=50.4
Q ss_pred CccEEEeccCCCCcchhhhhhhhcccccceEeeccccccceeeccccccCCCCc-cccccccccccccccccceeccCCc
Q 040774 900 CLKELRVCACEHLMNLVASSAAKNLVQLVRMTVRECNKITELVVASEGDAANDE-IIFPKLMFLKLHRLQSLTTFCSANY 978 (1035)
Q Consensus 900 ~L~~L~i~~c~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~-~~l~sL~~L~l~~c~~L~~l~~~~~ 978 (1035)
.|+.|++++|. +++..-.. ...+++|++|++++|..+++-...... .. ..+++|++|+|++|+++++-.....
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~----~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLS----QLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHH----TCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHH----hcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 46666666665 55432222 245666666666666666554222110 00 0134566777777776665443322
Q ss_pred eeeCCccCEEEEecCCCccc
Q 040774 979 TFKFPSLFYLSVRNCPKMKI 998 (1035)
Q Consensus 979 ~~~~~~L~~L~i~~C~~l~~ 998 (1035)
..+++|++|+|++||+++.
T Consensus 136 -~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 -HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp -GGCTTCCEEEEESCTTCCC
T ss_pred -hcCCCCCEEECCCCCCCCc
Confidence 2567777777777777765
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=9.9e-07 Score=83.79 Aligned_cols=69 Identities=16% Similarity=0.374 Sum_probs=35.1
Q ss_pred cccCccEEEeccCCCCcchhhhhhhhc---ccccceEeeccccccceeeccccccCCCCccccccccccccccccccce
Q 040774 897 SFRCLKELRVCACEHLMNLVASSAAKN---LVQLVRMTVRECNKITELVVASEGDAANDEIIFPKLMFLKLHRLQSLTT 972 (1035)
Q Consensus 897 ~~~~L~~L~i~~c~~L~~l~~~~~~~~---l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~l~sL~~L~l~~c~~L~~ 972 (1035)
.+++|++|++++|..+++-....+.+. .++|++|+|++|+++++-.... +..+++|++|+|++|+.+++
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-------L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-------LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-------GGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-------HhcCCCCCEEECCCCCCCCc
Confidence 355556666666665555422222221 2356666666666555542221 22456666666666666654
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=0.00011 Score=81.96 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=30.0
Q ss_pred CCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecc
Q 040774 251 QIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQ 314 (1035)
Q Consensus 251 ~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~ 314 (1035)
+|...+|..+.+|+.+.+.. .++.++ .+|.++.+|+.+++..+ ++.+ ..|.++.+|+.+.+.
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 44455555555555555543 244442 24555555555555432 3333 344445555544443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.05 E-value=3.3e-06 Score=92.10 Aligned_cols=158 Identities=18% Similarity=0.162 Sum_probs=97.7
Q ss_pred CCCCcceeeccCCCCC---C----CCCChhhhcCCCCccEEEccCCcCccCcccccCCCCCcEEEcCCCCCCC--ccccc
Q 040774 233 ECPQLEFFYNFAPNNS---P----LQIPDNIFIGMPKLKVLDFTRMRLLSLPSSIHLLTDLRTLCLDSCQLED--IRVIG 303 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~---~----~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp~~i~~L~~Lr~L~L~~~~l~~--l~~i~ 303 (1035)
.+++|+.|.+...... . ..-...++..+++|+.|+++++.-..++. +. +.+|++|++..|.+.. +..+.
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHH
Confidence 4678888877541110 0 01123456778899999998874334554 43 7889999998887652 24443
Q ss_pred --CCCCCcEEecccC--c------CCcchHhh--ccCCcCCEEcccCCccccc-cChhhh---cCCCCCcEEEccCCccc
Q 040774 304 --ELRKLEILSLQAS--A------IEQLPMEI--GQLTQLKLLDLSNCSKLKV-IAPNVL---SNLSQLEELYMANCSIE 367 (1035)
Q Consensus 304 --~L~~L~~L~L~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~~l~~-lp~~~l---~~L~~L~~L~l~~~~~~ 367 (1035)
++++|++|+|+.+ . +..+...+ ..+++|++|++.+|. +.. .+.. + ..+++|++|+++.|.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~-la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEM-FLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHH-HHHCSSGGGCSEEECCSSCCB
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHH-HHhCccCCCCCEEECCCCCCC
Confidence 7889999988631 1 22222222 357899999998876 332 2222 2 25788999999888775
Q ss_pred eeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 368 WEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
.. ........+.++++|+.|+++.|.+
T Consensus 293 d~-------G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 293 DE-------GARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp HH-------HHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred hH-------HHHHHHhhcccCCcceEEECCCCcC
Confidence 10 0011233446778899999987753
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.03 E-value=3.7e-06 Score=82.44 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=75.5
Q ss_pred hhhcCCCCccEEEccCC-cCc-----cCcccccCCCCCcEEEcCCCCCCC-----c-ccccCCCCCcEEecccCcCCc--
Q 040774 255 NIFIGMPKLKVLDFTRM-RLL-----SLPSSIHLLTDLRTLCLDSCQLED-----I-RVIGELRKLEILSLQASAIEQ-- 320 (1035)
Q Consensus 255 ~~f~~~~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~~-- 320 (1035)
.++...+.|+.|+|++| .+. .+...+...++|++|+|++|.+.. + ..+...++|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34567888888888888 775 355667777888888888888763 2 445566778888888887773
Q ss_pred ---chHhhccCCcCCEEcc--cCCccccccCh----hhhcCCCCCcEEEccCCccc
Q 040774 321 ---LPMEIGQLTQLKLLDL--SNCSKLKVIAP----NVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 321 ---lp~~i~~L~~L~~L~l--~~~~~l~~lp~----~~l~~L~~L~~L~l~~~~~~ 367 (1035)
+...+...++|++|++ ++|. ++.-.. ..+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4555666777888887 5565 443211 11444567777777777654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=1.3e-05 Score=87.38 Aligned_cols=128 Identities=19% Similarity=0.200 Sum_probs=88.8
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccC-ccccc--CCCCCcEEEcCCC--C------CCCc-c
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSL-PSSIH--LLTDLRTLCLDSC--Q------LEDI-R 300 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~--~L~~Lr~L~L~~~--~------l~~l-~ 300 (1035)
.+++|+.|.+.+ + ....++. + ...+|+.|++..+.+..- ...+. .+++|++|+|+.+ . +..+ .
T Consensus 170 ~~P~L~~L~L~g-~-~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKG-T-NNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp TCTTCCEEEEEC-C-BTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred cCCCCcEEEEeC-C-CCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 578999999987 2 2234444 2 378999999998887521 22333 7889999998532 1 2222 2
Q ss_pred cc--cCCCCCcEEecccCcCCc-chHhh---ccCCcCCEEcccCCccccc-----cChhhhcCCCCCcEEEccCCccc
Q 040774 301 VI--GELRKLEILSLQASAIEQ-LPMEI---GQLTQLKLLDLSNCSKLKV-----IAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 301 ~i--~~L~~L~~L~L~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~l~~-----lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
.+ +.+++|++|++++|.+.. .+..+ ..+++|++|+++.|. ++. ++.+ +.++++|+.|++++|.+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSBBCC
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCCcCC
Confidence 22 357899999999988762 23333 358899999999886 655 2332 456899999999999876
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=0.00048 Score=76.72 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=33.8
Q ss_pred CCCCcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEEEcC
Q 040774 233 ECPQLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTLCLD 292 (1035)
Q Consensus 233 ~~~~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L~L~ 292 (1035)
+|.+|+++.+.. ....|.+.+|.++.+|+.+++..+ ++.++ .+|.++..|+.+.+.
T Consensus 69 ~c~~L~~i~lp~---~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 69 GCRKVTEIKIPS---TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TCTTEEEEECCT---TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred CCCCceEEEeCC---CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 566777776643 355666667777777777777543 44443 345566666655543
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.78 E-value=7.6e-06 Score=84.21 Aligned_cols=61 Identities=28% Similarity=0.446 Sum_probs=28.7
Q ss_pred CCCCccEEEccCCcCccC---cccccCCCCCcEEEcCCCCCCCcccccCCC--CCcEEecccCcCC
Q 040774 259 GMPKLKVLDFTRMRLLSL---PSSIHLLTDLRTLCLDSCQLEDIRVIGELR--KLEILSLQASAIE 319 (1035)
Q Consensus 259 ~~~~Lr~L~Ls~~~i~~l---p~~i~~L~~Lr~L~L~~~~l~~l~~i~~L~--~L~~L~L~~~~l~ 319 (1035)
++++|+.|+|++|.+..+ |..+..+++|++|+|++|.++.+..+..+. +|++|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 344555555555555433 233344555555555555554443333333 4555555554443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.76 E-value=2.6e-05 Score=80.19 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=76.0
Q ss_pred hcCCCCccE--EEccCCcCccCccc----ccCCCCCcEEEcCCCCCCCccc----ccCCCCCcEEecccCcCCcchHhhc
Q 040774 257 FIGMPKLKV--LDFTRMRLLSLPSS----IHLLTDLRTLCLDSCQLEDIRV----IGELRKLEILSLQASAIEQLPMEIG 326 (1035)
Q Consensus 257 f~~~~~Lr~--L~Ls~~~i~~lp~~----i~~L~~Lr~L~L~~~~l~~l~~----i~~L~~L~~L~L~~~~l~~lp~~i~ 326 (1035)
|...+.|+. ++++.|....++.. ..++++|++|+|++|.++.+.. ++.+++|++|+|++|.++.+ ..+.
T Consensus 137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~ 215 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD 215 (267)
T ss_dssp GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence 444445554 56677755443332 2568899999999999998743 45899999999999999987 3456
Q ss_pred cCC--cCCEEcccCCccccccCh------hhhcCCCCCcEEEc
Q 040774 327 QLT--QLKLLDLSNCSKLKVIAP------NVLSNLSQLEELYM 361 (1035)
Q Consensus 327 ~L~--~L~~L~l~~~~~l~~lp~------~~l~~L~~L~~L~l 361 (1035)
.+. +|++|++++|..-..+|. ..+..+++|+.|+-
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 666 999999999983344442 34778999999973
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.72 E-value=1.8e-05 Score=77.58 Aligned_cols=117 Identities=13% Similarity=0.091 Sum_probs=88.4
Q ss_pred CcccccCCCCCcEEEcCCC-CCCC-----c-ccccCCCCCcEEecccCcCCc-----chHhhccCCcCCEEcccCCcccc
Q 040774 276 LPSSIHLLTDLRTLCLDSC-QLED-----I-RVIGELRKLEILSLQASAIEQ-----LPMEIGQLTQLKLLDLSNCSKLK 343 (1035)
Q Consensus 276 lp~~i~~L~~Lr~L~L~~~-~l~~-----l-~~i~~L~~L~~L~L~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~l~ 343 (1035)
+...+...++|++|+|++| .+.. + ..+...++|++|+|++|.+.. +...+...++|++|++++|. ++
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~ 106 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-IS 106 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CC
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CC
Confidence 3456778899999999999 8863 3 667778999999999999873 45566777899999999997 65
Q ss_pred c-----cChhhhcCCCCCcEEEc--cCCccceeeccccccccccCHHhhcCCCCCCEEEEeecCC
Q 040774 344 V-----IAPNVLSNLSQLEELYM--ANCSIEWEVLGLSIERSNASLVELKNLSRLTTLEINILDA 401 (1035)
Q Consensus 344 ~-----lp~~~l~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 401 (1035)
. +... +...++|++|++ ++|.+... ........+...++|++|++++|.+
T Consensus 107 ~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~-------g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSGILALVEA-LQSNTSLIELRIDNQSQPLGNN-------VEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH-------HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH-------HHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4 2333 667789999999 88887611 0112334567778999999998864
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.45 E-value=0.014 Score=64.64 Aligned_cols=121 Identities=11% Similarity=0.192 Sum_probs=73.3
Q ss_pred CcceeeccCCCCCCCCCChhhhcCCCCccEEEccCCc---CccCc-ccccCCCCCcEEEcCCCCCCCc--ccccCCCCCc
Q 040774 236 QLEFFYNFAPNNSPLQIPDNIFIGMPKLKVLDFTRMR---LLSLP-SSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLE 309 (1035)
Q Consensus 236 ~Lr~L~l~~~~~~~~~i~~~~f~~~~~Lr~L~Ls~~~---i~~lp-~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~ 309 (1035)
.|+++.+.. ....|.+.+|.++.+|+.+.+..+. ++.+. .+|..+.+|+.+.+..+ ++.+ ..+..+.+|+
T Consensus 65 ~L~sI~iP~---svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPD---TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECT---TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCC
T ss_pred cCEEEEECC---CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccc
Confidence 466666653 3566777777778888887777653 44453 35666777776665443 3333 5566777777
Q ss_pred EEecccCcCCcchHh-hccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCC
Q 040774 310 ILSLQASAIEQLPME-IGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANC 364 (1035)
Q Consensus 310 ~L~L~~~~l~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~ 364 (1035)
.+.+..+ +..++.. +..+.+|+.+.+..+ +..+....+.. .+|+.+.+...
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~ 192 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAK 192 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTT
T ss_pred cccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCc
Confidence 7777542 3444333 566777777777653 55666554543 55666666543
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.83 E-value=0.027 Score=62.37 Aligned_cols=142 Identities=14% Similarity=0.190 Sum_probs=92.1
Q ss_pred CccEEEecCCCCCCCCCC--CCCCCcceeeccCC-CCCCCCCChhhhcCCCCccEEEccCCcCccCc-ccccCCCCCcEE
Q 040774 214 KCSRISLYDNNISEIPQG--WECPQLEFFYNFAP-NNSPLQIPDNIFIGMPKLKVLDFTRMRLLSLP-SSIHLLTDLRTL 289 (1035)
Q Consensus 214 ~~~~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~-~~~~~~i~~~~f~~~~~Lr~L~Ls~~~i~~lp-~~i~~L~~Lr~L 289 (1035)
.+..+.+..+ +..+... .+|.+|+.+.+... ......|...+|..+..|+.+.+..+ +..++ ..|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4677777643 5555543 37899999988751 12356788888988888888777654 45553 467788889998
Q ss_pred EcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEc
Q 040774 290 CLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYM 361 (1035)
Q Consensus 290 ~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 361 (1035)
.+..+ +..+ ..+....+|+.+.+..+ ++.+....-.-.+|+.+.+... +..+....+.+..+|.....
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITS 212 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEE
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecc
Confidence 88643 3333 56777888888888653 4555444333456777777653 44454444666666665543
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.81 E-value=0.021 Score=62.88 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=47.1
Q ss_pred hhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hccCCc
Q 040774 255 NIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQLTQ 330 (1035)
Q Consensus 255 ~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~L~~ 330 (1035)
..|..+..|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+ ..+.+..+|+.+.+.. .++.++.. +..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 33444455555544332 2222 223444455555554433 3322 3444445555555533 23333332 444555
Q ss_pred CCEEcccCCccccccChhhhcCCCCCcEEEcc
Q 040774 331 LKLLDLSNCSKLKVIAPNVLSNLSQLEELYMA 362 (1035)
Q Consensus 331 L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~ 362 (1035)
|+.+.+.++. ++.++...+.++.+|+.+.+.
T Consensus 288 L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp CCEEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred cccccccccc-cceehhhhhcCCCCCCEEEcC
Confidence 5555554443 445555445555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.16 E-value=0.029 Score=50.49 Aligned_cols=51 Identities=27% Similarity=0.391 Sum_probs=25.0
Q ss_pred EEEccCCcCc--cCcccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCc
Q 040774 265 VLDFTRMRLL--SLPSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASA 317 (1035)
Q Consensus 265 ~L~Ls~~~i~--~lp~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~ 317 (1035)
+++.+++.++ .+|..+. .+|++|+|++|.|+.+ ..|..+.+|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4555555555 5554433 2455555555555444 334445555555555543
No 165
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.68 E-value=0.46 Score=51.18 Aligned_cols=148 Identities=11% Similarity=0.092 Sum_probs=85.6
Q ss_pred eeEeCCCCCHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHH-HHHHHhcCCCCC
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAGD--CAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWK-EALRQLKKPSHW 88 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~~--~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~-~~l~~l~~~~~~ 88 (1035)
..+++.+|+.+|+.+++.+..+. ...+ .+.+.+|++.++|.|+++..++..+....+...|- .+.+...
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----- 267 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK----- 267 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH-----
Confidence 58999999999999999886521 1112 35778999999999999999987654321222221 1111000
Q ss_pred CccchhhhhhHHHHHhhhccChhhhhHHHhcccccCCCcccHHHHHHHHHHcCcccCCCcHHHHHHHHHHHHHHHHHhcc
Q 040774 89 NFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMGSPQASMQDLLKYAIGLGILKGVSTVEEARDKVNALVDQLKDACL 168 (1035)
Q Consensus 89 ~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp~~~~~~~~Li~~w~a~g~~~~~~~~~~~~~~~~~~~~~L~~~sl 168 (1035)
.....++ -.+.+ . +.. .+..+..+|. + .++..++.....+.. ++.+..++ .++++.|++.++
T Consensus 268 --~~~~~~l---~~l~~-~-~~~-~~~~l~~la~--g-~~~~~~l~~~~~~~~---~~~~~~~~----~~~l~~L~~~gl 329 (350)
T 2qen_A 268 --GLIMGEL---EELRR-R-SPR-YVDILRAIAL--G-YNRWSLIRDYLAVKG---TKIPEPRL----YALLENLKKMNW 329 (350)
T ss_dssp --HHHHHHH---HHHHH-H-CHH-HHHHHHHHHT--T-CCSHHHHHHHHHHTT---CCCCHHHH----HHHHHHHHHTTS
T ss_pred --HHHHHHH---HHHHh-C-Chh-HHHHHHHHHh--C-CCCHHHHHHHHHHHh---CCCCHHHH----HHHHHHHHhCCC
Confidence 0011111 12222 2 565 5888888887 2 245556655442211 01122233 347999999999
Q ss_pred cccccCcceeeh-hhhHHHH
Q 040774 169 LLDGINSYWFSM-HDVVSDV 187 (1035)
Q Consensus 169 ~~~~~~~~~~~m-Hdl~~dl 187 (1035)
+...+ +.|++ |.++++.
T Consensus 330 i~~~~--~~y~~~~p~~~~~ 347 (350)
T 2qen_A 330 IVEED--NTYKIADPVVATV 347 (350)
T ss_dssp EEEET--TEEEESSHHHHHH
T ss_pred EEecC--CEEEEecHHHHHH
Confidence 87542 34555 6666654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.64 E-value=0.12 Score=56.81 Aligned_cols=105 Identities=22% Similarity=0.280 Sum_probs=42.6
Q ss_pred CChhhhcCCCCccEEEccCCcCccC-cccccCCCCCcEEEcCCCCCCCc--ccccCCCCCcEEecccCcCCcchHh-hcc
Q 040774 252 IPDNIFIGMPKLKVLDFTRMRLLSL-PSSIHLLTDLRTLCLDSCQLEDI--RVIGELRKLEILSLQASAIEQLPME-IGQ 327 (1035)
Q Consensus 252 i~~~~f~~~~~Lr~L~Ls~~~i~~l-p~~i~~L~~Lr~L~L~~~~l~~l--~~i~~L~~L~~L~L~~~~l~~lp~~-i~~ 327 (1035)
+....|..+..|+.+.+..+ ++.+ ...+.++.+|+.+.+..+ ++.+ ..|.++.+|+.+.+.++.++.++.. +.+
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence 33334444444444444332 3333 223344444444444322 2222 3344444444444444444444322 344
Q ss_pred CCcCCEEcccCCccccccChhhhcCCCCCcEEE
Q 040774 328 LTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELY 360 (1035)
Q Consensus 328 L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 360 (1035)
+.+|+.+.+..+ ++.++...+.++++|+.+.
T Consensus 309 c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ 339 (379)
T 4h09_A 309 CVKLSSVTLPTA--LKTIQVYAFKNCKALSTIS 339 (379)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCCCC
T ss_pred CCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEE
Confidence 444444444321 3444444344444444443
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.58 E-value=0.048 Score=52.63 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=54.0
Q ss_pred hcCCCCccEEEccCC-cCc-----cCcccccCCCCCcEEEcCCCCCCC-----c-ccccCCCCCcEEecccCcCCc----
Q 040774 257 FIGMPKLKVLDFTRM-RLL-----SLPSSIHLLTDLRTLCLDSCQLED-----I-RVIGELRKLEILSLQASAIEQ---- 320 (1035)
Q Consensus 257 f~~~~~Lr~L~Ls~~-~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l~~---- 320 (1035)
...-..|+.|+|+++ .|. .+-+.+..-++|+.|+|++|.+.+ + ..+..-+.|++|+|++|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 445677888888875 665 245566666788888888888763 2 445556778888888877762
Q ss_pred -chHhhccCCcCCEEcccCC
Q 040774 321 -LPMEIGQLTQLKLLDLSNC 339 (1035)
Q Consensus 321 -lp~~i~~L~~L~~L~l~~~ 339 (1035)
+-+.+..-+.|++|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 2233444455666766644
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.56 E-value=0.036 Score=49.88 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=42.3
Q ss_pred EEecccCcCC--cchHhhccCCcCCEEcccCCccccccChhhhcCCCCCcEEEccCCccc
Q 040774 310 ILSLQASAIE--QLPMEIGQLTQLKLLDLSNCSKLKVIAPNVLSNLSQLEELYMANCSIE 367 (1035)
Q Consensus 310 ~L~L~~~~l~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l~~~~~~ 367 (1035)
+++-+++.++ .+|..+- .+|++|+|++|. ++.+|.+.+..+.+|++|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 5667777777 7775432 468888888887 88888887888888888888888764
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.96 E-value=0.43 Score=51.63 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=86.1
Q ss_pred eeEeCCCCCHHHHHHHHHHhhC--CCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcCCChhHHHHHHHHhcCCCCCC
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAG--DCAENGELKSIATDVAKECGRLPIAIVTLAKALRNKSIVSAWKEALRQLKKPSHWN 89 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~--~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~ 89 (1035)
..+++.+|+.+|+.+++.+.++ .... +. . .+|+++|+|.|+++..+|..+....+...|- ..+-
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~---~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~---~~~~------ 267 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDF-KD---Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAI---NQTL------ 267 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCC-CC---H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHH---HHHH------
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCC-Cc---H-HHHHHHhCCCHHHHHHHHHHHccccchHHHH---HHHH------
Confidence 5789999999999999998652 1111 12 1 8999999999999999998875432333332 1110
Q ss_pred ccchhhhhhHHH-HHhhh--ccChhhhhHHHhcccccCCCcccHHHHHHHHH-HcCcccCCCcHHHHHHHHHHHHHHHHH
Q 040774 90 FEGVLAKTYSAI-ELSYK--YLREEELKQLFLQCSLMGSPQASMQDLLKYAI-GLGILKGVSTVEEARDKVNALVDQLKD 165 (1035)
Q Consensus 90 ~~~~~~~i~~~L-~lSY~--~Lp~~~lk~cFly~s~Fp~~~~~~~~Li~~w~-a~g~~~~~~~~~~~~~~~~~~~~~L~~ 165 (1035)
+.....+..-+ .+.|+ .+|.. .|..+..+|. +. +...+..... ..|. ..+..++ .++++.|++
T Consensus 268 -~~~~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~--g~--~~~~l~~~~~~~~g~---~~~~~~~----~~~L~~L~~ 334 (357)
T 2fna_A 268 -EYAKKLILKEFENFLHGREIARKR-YLNIMRTLSK--CG--KWSDVKRALELEEGI---EISDSEI----YNYLTQLTK 334 (357)
T ss_dssp -HHHHHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT--CB--CHHHHHHHHHHHHCS---CCCHHHH----HHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHc--CC--CHHHHHHHHHHhcCC---CCCHHHH----HHHHHHHHh
Confidence 01111111111 12221 57777 5888888887 22 4455543221 1221 0111222 347999999
Q ss_pred hcccccccCcceee-hhhhHHHH
Q 040774 166 ACLLLDGINSYWFS-MHDVVSDV 187 (1035)
Q Consensus 166 ~sl~~~~~~~~~~~-mHdl~~dl 187 (1035)
++++...+ +.|+ .|.++++.
T Consensus 335 ~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 335 HSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp TTSEEESS--SCEEESSHHHHHH
T ss_pred CCCEEecC--CEEEecCHHHHHh
Confidence 99987643 3455 47777764
No 170
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.84 E-value=0.15 Score=49.29 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=58.3
Q ss_pred hcCCCCccEEEccCCcCc-----cCcccccCCCCCcEEEcCCCCCCC-----c-ccccCCCCCcEEecccCcC---C---
Q 040774 257 FIGMPKLKVLDFTRMRLL-----SLPSSIHLLTDLRTLCLDSCQLED-----I-RVIGELRKLEILSLQASAI---E--- 319 (1035)
Q Consensus 257 f~~~~~Lr~L~Ls~~~i~-----~lp~~i~~L~~Lr~L~L~~~~l~~-----l-~~i~~L~~L~~L~L~~~~l---~--- 319 (1035)
+..-..|+.|+|++|.+. .+-+.+..=+.|++|+|++|.|.. + ..+..-+.|++|+|+++.. .
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 456678999999999886 355666667889999999999873 2 5666677899999986533 3
Q ss_pred --cchHhhccCCcCCEEcccCC
Q 040774 320 --QLPMEIGQLTQLKLLDLSNC 339 (1035)
Q Consensus 320 --~lp~~i~~L~~L~~L~l~~~ 339 (1035)
.+-..+..-+.|+.|+++.+
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCC
Confidence 12233445566777776654
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.40 E-value=1 Score=49.79 Aligned_cols=151 Identities=7% Similarity=-0.060 Sum_probs=84.8
Q ss_pred eEeCCCCCHHHHHHHHHHhh---CCC-CCChhhHHHHHHHHHHhC------CchhHHHHHHHHH---h---cC--CChhH
Q 040774 13 TIGIDVLSDEEAWTLFKKMA---GDC-AENGELKSIATDVAKECG------RLPIAIVTLAKAL---R---NK--SIVSA 74 (1035)
Q Consensus 13 ~~~l~~L~~~~~~~Lf~~~a---~~~-~~~~~l~~~~~~i~~~c~------glPla~~~~g~~L---~---~~--~~~~~ 74 (1035)
.+++.+++.+|++++|..++ +.. ..+ .+..+.|++.|+ |.|..+..+.... + .. -+.+.
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~ 285 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDL 285 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 49999999999999998765 321 111 357888999999 9997665554322 1 11 12333
Q ss_pred HHHHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhcccccC---CCcccHHHHHHHHHH-c-Cccc-CCCc
Q 040774 75 WKEALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMG---SPQASMQDLLKYAIG-L-GILK-GVST 148 (1035)
Q Consensus 75 W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp---~~~~~~~~Li~~w~a-~-g~~~-~~~~ 148 (1035)
+..++..... ...+.-+++.||.+ -|.++..+|.+. +..++..++...+.. . .... ..-+
T Consensus 286 v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (412)
T 1w5s_A 286 VRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRG 351 (412)
T ss_dssp HHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCC
Confidence 3333332110 12345567889988 588888888653 245666666554421 1 1111 1111
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc----cCcceeehhhhH
Q 040774 149 VEEARDKVNALVDQLKDACLLLDG----INSYWFSMHDVV 184 (1035)
Q Consensus 149 ~~~~~~~~~~~~~~L~~~sl~~~~----~~~~~~~mHdl~ 184 (1035)
... +.+++++|++.+++... +..+.|++|++.
T Consensus 352 ~~~----~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 352 YTQ----YHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHH----HHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHH----HHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 122 33479999999998653 233456666554
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=83.92 E-value=1.3 Score=46.97 Aligned_cols=52 Identities=10% Similarity=-0.022 Sum_probs=40.4
Q ss_pred eeEeCCCCCHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHHhCCchhHHHHHHHHH
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAGD--CAENGELKSIATDVAKECGRLPIAIVTLAKAL 66 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~~--~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L 66 (1035)
.++++.+++.+|..+++.+.+.. ...+ .+..+.+++.++|.|-.+..+...+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 47899999999999999998832 1122 3567889999999998887776554
No 173
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=56.52 E-value=21 Score=35.13 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=41.8
Q ss_pred eeEeCCCCCHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHHhCCchhHHHHHHHHHh
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAGD--CAENGELKSIATDVAKECGRLPIAIVTLAKALR 67 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~~--~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~ 67 (1035)
..+++++++.+|.++++.+.+.. ...+ .+..+.|++.|+|.|..+..+...+.
T Consensus 178 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~~ 232 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLEHILNEEHIAHE---PRALQLLARAAEGSLRDALSLTDQAI 232 (250)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHTTCCBC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 58999999999999999998831 1112 35678999999999999988765544
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=51.48 E-value=1.3e+02 Score=31.94 Aligned_cols=143 Identities=15% Similarity=0.108 Sum_probs=81.7
Q ss_pred HHhhcCCeeEeCCCCCHHHHHHHHHHhhC---C-CCCChhhHHHHHHHHHHhC---Cch-hHHHHHHHHHh-----c--C
Q 040774 5 VLESIGSKTIGIDVLSDEEAWTLFKKMAG---D-CAENGELKSIATDVAKECG---RLP-IAIVTLAKALR-----N--K 69 (1035)
Q Consensus 5 v~~~~~~~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~l~~~~~~i~~~c~---glP-la~~~~g~~L~-----~--~ 69 (1035)
+...++...+++.+++.+|..+++.+++. . ...+ .+..+.|+++++ |.| .|+..+..... + .
T Consensus 187 l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~ 263 (387)
T 2v1u_A 187 VKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREER 263 (387)
T ss_dssp HHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred HHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCC
Confidence 33344435789999999999999998862 1 1222 245677888887 999 34333333221 1 1
Q ss_pred CChhHHHHHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhccc-ccC-CCcccHHHHHHHHH----HcCcc
Q 040774 70 SIVSAWKEALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCS-LMG-SPQASMQDLLKYAI----GLGIL 143 (1035)
Q Consensus 70 ~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s-~Fp-~~~~~~~~Li~~w~----a~g~~ 143 (1035)
-+.+.++.++..+. ...+.-++..||.++ +.-++..+ ++- +..+...++.+... ..| +
T Consensus 264 i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~~-~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 327 (387)
T 2v1u_A 264 VRREHVYSARAEIE--------------RDRVSEVVRTLPLHA-KLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-L 327 (387)
T ss_dssp BCHHHHHHHHHHHH--------------HHHHHHHHHSSCHHH-HHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-C
T ss_pred cCHHHHHHHHHHHh--------------hchHHHHHHcCCHHH-HHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-C
Confidence 35566666665331 123455678899873 44444444 333 24565564444322 233 1
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHhccccc
Q 040774 144 KGVSTVEEARDKVNALVDQLKDACLLLD 171 (1035)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~L~~~sl~~~ 171 (1035)
.. .+ ...+.++++.|...+++..
T Consensus 328 ~~-~~----~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 328 EH-VT----LRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp CC-CC----HHHHHHHHHHHHHTTSEEE
T ss_pred CC-CC----HHHHHHHHHHHHhCCCeEE
Confidence 11 11 2334457999999999875
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=45.17 E-value=3e+02 Score=28.99 Aligned_cols=135 Identities=11% Similarity=-0.027 Sum_probs=75.8
Q ss_pred eeEeCCCCCHHHHHHHHHHhhC---C-CCCChhhHHHHHHHHHHhC---Cchh-HHHHHHHHH--h---cCCChhHHHHH
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAG---D-CAENGELKSIATDVAKECG---RLPI-AIVTLAKAL--R---NKSIVSAWKEA 78 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~l~~~~~~i~~~c~---glPl-a~~~~g~~L--~---~~~~~~~W~~~ 78 (1035)
..+++.+++.+|..++|.+++. . ...+ .+..+.|++.|+ |-|- |+..+-... + ..-+.+.+..+
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~ 266 (384)
T 2qby_B 190 PSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKA 266 (384)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHH
T ss_pred CeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 4899999999999999999862 1 2222 245677788887 8776 444433332 2 22467777777
Q ss_pred HHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhcccccCC-CcccHHHHHHHHHHcCcccCCCcHHHHHHHHH
Q 040774 79 LRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMGS-PQASMQDLLKYAIGLGILKGVSTVEEARDKVN 157 (1035)
Q Consensus 79 l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp~-~~~~~~~Li~~w~a~g~~~~~~~~~~~~~~~~ 157 (1035)
++... ...+.-+++.|+.++ |..+...+.... ..+ .+.........| +.. .+. ....
T Consensus 267 ~~~~~--------------~~~~~~~~~~l~~~~-~~~l~al~~~~~~~~~-~~~~~~~~~~~g-~~~-~~~----~~~~ 324 (384)
T 2qby_B 267 IVDYE--------------QERLIEAVKALPFHY-KLALRSLIESEDVMSA-HKMYTDLCNKFK-QKP-LSY----RRFS 324 (384)
T ss_dssp HHHHH--------------HHHHHHHHHSSCHHH-HHHHHHHHTCCBHHHH-HHHHHHHHHHTT-CCC-CCH----HHHH
T ss_pred HHHHh--------------cchHHHHHHcCCHHH-HHHHHHHHHhcccChH-HHHHHHHHHHcC-CCC-CCH----HHHH
Confidence 76431 124556778888762 443333443111 111 111222222333 111 122 2334
Q ss_pred HHHHHHHHhccccc
Q 040774 158 ALVDQLKDACLLLD 171 (1035)
Q Consensus 158 ~~~~~L~~~sl~~~ 171 (1035)
++++.|.+++++..
T Consensus 325 ~~l~~L~~~gli~~ 338 (384)
T 2qby_B 325 DIISELDMFGIVKI 338 (384)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHhCCCEEE
Confidence 57999999999875
No 176
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=33.33 E-value=95 Score=25.74 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=44.3
Q ss_pred HHHHHHHHhh---C-CCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcC-CChhHHHHHHHHhc
Q 040774 23 EAWTLFKKMA---G-DCAENGELKSIATDVAKECGRLPIAIVTLAKALRNK-SIVSAWKEALRQLK 83 (1035)
Q Consensus 23 ~~~~Lf~~~a---~-~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~-~~~~~W~~~l~~l~ 83 (1035)
|.|++=+..- + +-.+.|.+.+-|-+..++..-.|+|+.++-+.=-.- ...+-|..+++.++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqElk 90 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 90 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHHHh
Confidence 5666654433 3 667889999999999999999999999998765443 23334888887653
No 177
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=32.12 E-value=4.6e+02 Score=27.34 Aligned_cols=136 Identities=13% Similarity=0.051 Sum_probs=74.5
Q ss_pred eeEeCCCCCHHHHHHHHHHhhC---C-CCCChhhHHHHHHHHHHhC---CchhHHHH-HHHHHh-----c--CCChhHHH
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAG---D-CAENGELKSIATDVAKECG---RLPIAIVT-LAKALR-----N--KSIVSAWK 76 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~l~~~~~~i~~~c~---glPla~~~-~g~~L~-----~--~~~~~~W~ 76 (1035)
..+++++++.+|.++++.+.+. . ...+ .++.+.|++.++ |.|-.+.. +..... + +-+.+.++
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~ 266 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVY 266 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHH
Confidence 5899999999999999998762 1 2222 356667777777 99884433 332221 1 12555555
Q ss_pred HHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhcccccC--C-CcccHHHHHHHH----HHcCcccCCCcH
Q 040774 77 EALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMG--S-PQASMQDLLKYA----IGLGILKGVSTV 149 (1035)
Q Consensus 77 ~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp--~-~~~~~~~Li~~w----~a~g~~~~~~~~ 149 (1035)
.++..+. ...+.-++..+|.++ +..+..++... + ..+...++.+.. -..| +.. -+.
T Consensus 267 ~a~~~~~--------------~~~~~~~~~~l~~~~-~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g-~~~-~~~ 329 (386)
T 2qby_A 267 MAKEEIE--------------RDRVRDIILTLPFHS-KLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG-VEA-VTQ 329 (386)
T ss_dssp HHHHHHH--------------HHHHHHHHHTSCHHH-HHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT-CCC-CCH
T ss_pred HHHHHHh--------------hchHHHHHHcCCHHH-HHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC-CCC-CCH
Confidence 5554321 124556677888763 44444444322 1 334444443322 1223 111 111
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 040774 150 EEARDKVNALVDQLKDACLLLD 171 (1035)
Q Consensus 150 ~~~~~~~~~~~~~L~~~sl~~~ 171 (1035)
.....+++.|.+.+++..
T Consensus 330 ----~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 330 ----RRVSDIINELDMVGILTA 347 (386)
T ss_dssp ----HHHHHHHHHHHHHTSEEE
T ss_pred ----HHHHHHHHHHHhCCCEEE
Confidence 223447889999999864
No 178
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=31.11 E-value=19 Score=20.55 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=15.5
Q ss_pred HhCCchhHHHHHHHHHhcC
Q 040774 51 ECGRLPIAIVTLAKALRNK 69 (1035)
Q Consensus 51 ~c~glPla~~~~g~~L~~~ 69 (1035)
|-.-+|||+.+.++.++.+
T Consensus 7 krrklplavav~agv~~aq 25 (28)
T 2vda_B 7 KRRKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCCCTHHHHHHHHTTCCC
T ss_pred ccccCchHHHHHHHHhHhh
Confidence 3457999999999998765
No 179
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=26.49 E-value=5.7e+02 Score=26.66 Aligned_cols=159 Identities=9% Similarity=0.019 Sum_probs=85.8
Q ss_pred eeEeCCCCCHHHHHHHHHHhhC---C-CCCChhhHHHHHHHHHHh---------CCchhHHHHHHH-HHh-----cC--C
Q 040774 12 KTIGIDVLSDEEAWTLFKKMAG---D-CAENGELKSIATDVAKEC---------GRLPIAIVTLAK-ALR-----NK--S 70 (1035)
Q Consensus 12 ~~~~l~~L~~~~~~~Lf~~~a~---~-~~~~~~l~~~~~~i~~~c---------~glPla~~~~g~-~L~-----~~--~ 70 (1035)
..+++.+++.++..+++.+.+. . ...+ .+..+.|++++ +|.|-.+..+.. ... +. -
T Consensus 186 ~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i 262 (389)
T 1fnn_A 186 YVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHI 262 (389)
T ss_dssp CEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred ceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCc
Confidence 4799999999999999999872 1 1111 35778899999 787654443322 221 11 1
Q ss_pred ChhHHHHHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHhcccccC---C-CcccHHHHHHHHHH----cCc
Q 040774 71 IVSAWKEALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFLQCSLMG---S-PQASMQDLLKYAIG----LGI 142 (1035)
Q Consensus 71 ~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFly~s~Fp---~-~~~~~~~Li~~w~a----~g~ 142 (1035)
+.+.-..+...... ....-.+..||.+ -|..+...+.+. + ..+...++...+.. .|.
T Consensus 263 ~~~~v~~~~~~~~~--------------~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 327 (389)
T 1fnn_A 263 APEDVRKSSKEVLF--------------GISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGE 327 (389)
T ss_dssp CHHHHHHHHHHHSC--------------CCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHhh--------------hhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCC
Confidence 22333333332221 1122335667776 355554455432 1 14555566554432 232
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHhcccccccC------cce---e----ehhhhHHHHHHHHHcc
Q 040774 143 LKGVSTVEEARDKVNALVDQLKDACLLLDGIN------SYW---F----SMHDVVSDVAISIASR 194 (1035)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~L~~~sl~~~~~~------~~~---~----~mHdl~~dla~~v~~~ 194 (1035)
.. -+. ....+++++|.+++++..... .+. + -.||++..+...+..+
T Consensus 328 ~~--~~~----~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 328 RP--RVH----SQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp CC--CCH----HHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CC--CCH----HHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 11 111 224457999999999976321 121 1 2477777776666544
No 180
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=22.96 E-value=1.7e+02 Score=25.79 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=38.1
Q ss_pred CCCCChhhHHHHHHHHHHhCCchhHHHHHHHHHhcC-CChhHHHHHHHHhc
Q 040774 34 DCAENGELKSIATDVAKECGRLPIAIVTLAKALRNK-SIVSAWKEALRQLK 83 (1035)
Q Consensus 34 ~~~~~~~l~~~~~~i~~~c~glPla~~~~g~~L~~~-~~~~~W~~~l~~l~ 83 (1035)
+-.+.|.+.+-+-+..++..-.|+|+.++-+.=-+- ...+-|..++++++
T Consensus 83 DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqElk 133 (152)
T 2y69_E 83 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQELR 133 (152)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHHh
Confidence 556778888999999999999999999997654443 34444888887653
No 181
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=21.17 E-value=3.1e+02 Score=21.73 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhcCCCCCCccchhhhhhHHHHHhhhccChhhhhHHHh
Q 040774 59 IVTLAKALRNKSIVSAWKEALRQLKKPSHWNFEGVLAKTYSAIELSYKYLREEELKQLFL 118 (1035)
Q Consensus 59 ~~~~g~~L~~~~~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~L~lSY~~Lp~~~lk~cFl 118 (1035)
+.+++..+......++++.+.+.+.......+. .+++..+++-....++..+++..|-
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~--~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 15 NLYFQSLMKDTDSEEEIREAFRVEDKDGNGYIS--AAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp THHHHHHHCCCSCHHHHHHHHHHHCTTCCSCBC--HHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHCCCCcCcCC--HHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 445666676666778888888877654432222 1334555544333445444444443
Done!