Query 040775
Match_columns 183
No_of_seqs 132 out of 1080
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 18:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d4g_A Hypothetical protein BS 100.0 6E-29 2E-33 183.4 16.1 163 4-180 2-170 (171)
2 1jh6_A Cyclic phosphodiesteras 100.0 3.3E-28 1.1E-32 182.5 19.9 167 1-180 5-182 (189)
3 1iuh_A 2'-5' RNA ligase; riken 100.0 4.3E-29 1.5E-33 188.6 14.8 166 4-180 2-182 (198)
4 1vgj_A Hypothetical protein PH 100.0 6.7E-28 2.3E-32 179.6 17.4 167 4-177 2-182 (184)
5 2vfk_A AKAP18 delta; APO, hydr 99.9 2.3E-25 7.8E-30 168.7 16.7 170 4-180 4-204 (205)
6 2fsq_A ATU0111 protein; alpha- 98.5 5.1E-06 1.7E-10 63.7 14.7 162 4-179 42-242 (243)
7 2d4g_A Hypothetical protein BS 95.4 0.071 2.4E-06 37.9 7.6 69 88-165 3-76 (171)
8 1iuh_A 2'-5' RNA ligase; riken 94.9 0.098 3.3E-06 38.3 7.4 71 88-166 3-82 (198)
9 1jh6_A Cyclic phosphodiesteras 93.9 0.73 2.5E-05 33.3 10.2 40 124-163 38-79 (189)
10 1vgj_A Hypothetical protein PH 93.8 0.3 1E-05 34.9 7.8 72 88-166 3-83 (184)
11 2vfk_A AKAP18 delta; APO, hydr 92.0 0.7 2.4E-05 33.6 7.7 74 87-165 4-93 (205)
12 2fsq_A ATU0111 protein; alpha- 89.6 0.64 2.2E-05 35.4 5.5 77 6-82 142-227 (243)
13 2p8i_A Putative dioxygenase; Y 69.0 21 0.00073 23.7 6.6 72 4-75 12-87 (117)
14 2peb_A Putative dioxygenase; s 63.3 26 0.0009 23.5 6.2 90 4-93 11-105 (122)
15 2llz_A Uncharacterized protein 54.3 40 0.0014 21.6 8.0 76 4-79 11-92 (100)
16 3sxu_A DNA polymerase III subu 45.1 9.8 0.00033 26.5 1.8 33 89-133 43-75 (150)
17 2ogk_A Hypothetical protein; a 36.5 1E+02 0.0035 21.1 6.6 48 43-93 8-59 (146)
18 4fmw_A RNA (guanine-9-)-methyl 34.6 37 0.0013 24.7 3.5 78 15-99 34-115 (197)
19 2wny_A MTH_689, conserved prot 28.3 1.4E+02 0.0048 20.3 5.9 67 42-112 9-79 (141)
20 3dhf_A Nicotinamide phosphorib 28.1 1.5E+02 0.005 24.8 6.4 58 7-66 308-370 (484)
21 2k1o_A Putative; repressor, tr 26.2 66 0.0023 18.4 2.8 25 3-27 14-38 (66)
22 2jro_A Uncharacterized protein 20.0 1.4E+02 0.0048 18.2 3.6 60 49-112 4-63 (78)
No 1
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.96 E-value=6e-29 Score=183.38 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=131.2
Q ss_pred eeEEEEEeChhhHHHHHHHHHHHHHccCccccccCCCCCeeEEeecCCCCh---hHHHHHHHHhhccCCCeeEEEceeee
Q 040775 4 GYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPTIEP---AKLESIIKIHASKQEPLPLCLSTIGS 80 (183)
Q Consensus 4 ~y~i~l~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~pHiTL~~~~~~~~---~~l~~~l~~~~~~~~pf~l~~~~~g~ 80 (183)
.|+|++.|++++.+.+.++++++... . ...+|||||.++++++. +.+.+.++++++..+||+++++|+|+
T Consensus 2 R~Fiai~~~~~~~~~l~~~~~~~~~~----~---~~v~pHiTL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~g~ 74 (171)
T 2d4g_A 2 KYGIVLFPSKKLQDLANSYRKRYDPS----Y---SLIPPHLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYSS 74 (171)
T ss_dssp EEEEEBCCCHHHHHHHHHHHHHHCGG----G---GTSCSCBCCSSCEECCGGGHHHHHHHHHHHHHTCCCEEEEEEEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHHhCcc----c---CCCCCeEEeecCCcCChHHHHHHHHHHHHHHccCCCEEEEECCcEE
Confidence 69999999999999999999998431 1 13667999988776664 45677888888889999999999999
Q ss_pred eCCCCcEEEEeecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCccceeeeeccCChhhHHHHHHHHHhCCcceEEEEeE
Q 040775 81 FCNDNNVLFLAPTPSIPLLQFQSQLCEAFKREGIECGDEFRPENWIPYCPVAQEVPKTRMAEAFCVLRELKLPVTGYAMD 160 (183)
Q Consensus 81 F~~~~~vl~l~v~~~~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~PHiTL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 160 (183)
|+++++|+|+++.++++|.+||+++.+.+... ...++|+|||||||+...+.+.+++..++....+.+++|++
T Consensus 75 F~~~~~vl~l~~~~~~~L~~L~~~l~~~~~~~-------~~~~~f~PHiTLar~~~~~~~~~~~~~~~~~~~~~~~~v~~ 147 (171)
T 2d4g_A 75 FAPVNNVIYIKAEPTEELKTLNEKLYTGVLAG-------EQEYNFVPHVTVGQNLSDDEHSDVLGQLKMQEVSHEEIVDR 147 (171)
T ss_dssp CTTTCCCEEEEECCCHHHHHHHHHTTSGGGCS-------CCCSCCCCEEEEECSCCHHHHHHHHHHHTTSCCCEEEEECE
T ss_pred eCCCCcEEEEEccCChHHHHHHHHHHhccccc-------ccCCCCCCeEEeecCCCHHHHHHHHHHhcCCCCceeEEECe
Confidence 98323499999998899999999999876542 13457999999999777766777776654444577899999
Q ss_pred EEEEeec---CceeEEEEECCCC
Q 040775 161 IGLVEYS---PVRELFSFALGNN 180 (183)
Q Consensus 161 i~L~~~~---p~~~l~~~~l~~~ 180 (183)
|+|+++. .|+++++|||+++
T Consensus 148 i~L~~s~~g~~y~~l~~~~L~~~ 170 (171)
T 2d4g_A 148 FHLLYQLENGSWTVYETFLLGRG 170 (171)
T ss_dssp EEEEEECTTSCEEEEEEEECC--
T ss_pred EEEEEECCCCcEEEEEEEecCCC
Confidence 9999985 3999999999764
No 2
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.96 E-value=3.3e-28 Score=182.53 Aligned_cols=167 Identities=10% Similarity=0.028 Sum_probs=133.0
Q ss_pred CCceeEEEEEeChhhHHHHHHHHHHHHHccCccccccCCCCCeeEEeecCCCChhHHHHHHHHhhccCCCeeEEEceeee
Q 040775 1 MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPTIEPAKLESIIKIHASKQEPLPLCLSTIGS 80 (183)
Q Consensus 1 m~~~y~i~l~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~pHiTL~~~~~~~~~~l~~~l~~~~~~~~pf~l~~~~~g~ 80 (183)
+++.|+|++.||+++.+++.++++.++..... +..+|||||..--+.+.+.+.+.|++++.+.+||+++++|+|+
T Consensus 5 ~~~~~~f~~~pp~~~~~~l~~~~~~l~~~~~~-----~~~~~HiTLlG~~~~~~~~l~~~L~~~a~~~~pf~l~l~g~g~ 79 (189)
T 1jh6_A 5 KKDVYSVWALPDEESEPRFKKLMEALRSEFTG-----PRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVST 79 (189)
T ss_dssp CCEEEEEEEEECTTTHHHHHHHHHHHHHHHTC-----CCCCCCEEEEEEEEECHHHHHHHHHHHHHTCBCEEEEEEEEEE
T ss_pred CCCcEEEEEECCHHHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeCCCCCCHHHHHHHHHHHHhhCCCeEEEEcceec
Confidence 35689999999999999999999999875322 3489999994321223677889999998889999999999999
Q ss_pred eCCCCcEEEEeecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCccceeeeec-cCChhhHHHHHHHHHh---CCcceEE
Q 040775 81 FCNDNNVLFLAPTPSIPLLQFQSQLCEAFKREGIECGDEFRPENWIPYCPVAQ-EVPKTRMAEAFCVLRE---LKLPVTG 156 (183)
Q Consensus 81 F~~~~~vl~l~v~~~~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~PHiTL~~-~~~~~~~~~~~~~~~~---~~~~~~~ 156 (183)
|...++|||++++++++|.+|++++.+. .|. .+ .++|+||||||| ++..+...++...++. .....++
T Consensus 80 ~~~~~rvlw~~v~~~~~L~~L~~~v~~~---~g~--~~---~~~f~PHlTLar~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (189)
T 1jh6_A 80 GTFFFQCVFLLLQTTPEVMEAGEHCKNH---FNC--ST---TTPYMPHLSLLYAELTEEEKKNAQEKAYTLDSSLDGLSF 151 (189)
T ss_dssp EEETTEEEEEEECCCHHHHHHHHHHHHH---TTC--CC---CSCCCCEEEEECCCCCHHHHHHHHHHHHHHCTTCTTCEE
T ss_pred cCccceEEEEeecCCHHHHHHHHHHHHH---hCC--CC---CCCCCCeEEEEEecCCHHHHHHHHHHHHhhccCCCCCcE
Confidence 7666899999999899999999999886 332 12 257999999998 6666666666666542 2334578
Q ss_pred EEeEEEEEeecC-------ceeEEEEECCCC
Q 040775 157 YAMDIGLVEYSP-------VRELFSFALGNN 180 (183)
Q Consensus 157 ~v~~i~L~~~~p-------~~~l~~~~l~~~ 180 (183)
+|++|.||+++. |..+++|+|+.+
T Consensus 152 ~v~~~~L~~s~~~~~~~~~w~l~~~~~~~~~ 182 (189)
T 1jh6_A 152 RLNRLALCKTDTEDKTLETWETVAVCNLNPG 182 (189)
T ss_dssp EEEEEEEEECCTTCTTCTTCEEEEEEECBC-
T ss_pred EeeEEEEEEeCCCCCccCeEEEEEEEEcCCC
Confidence 999999999874 999999999864
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.96 E-value=4.3e-29 Score=188.58 Aligned_cols=166 Identities=14% Similarity=0.117 Sum_probs=129.9
Q ss_pred eeEEEEEeChhhHHHHHHHHHHHHHccCccccccCCCCCeeEEeecCCCChhH---HHHHHHHhhccCCCeeEEEceeee
Q 040775 4 GYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPTIEPAK---LESIIKIHASKQEPLPLCLSTIGS 80 (183)
Q Consensus 4 ~y~i~l~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~pHiTL~~~~~~~~~~---l~~~l~~~~~~~~pf~l~~~~~g~ 80 (183)
.|||++.||+++.+.|.++++.+.. .....+. +..++||||.|+++++.+. +.++++.+++..+||+++++|+|+
T Consensus 2 RlFial~~p~~~~~~l~~~~~~l~~-~~~~r~v-~~~~~HiTL~flgev~~~~~~~l~~~l~~~~~~~~pf~l~l~g~g~ 79 (198)
T 1iuh_A 2 RLFYAVFLPEEVRAALVEAQTKVRP-FRGWKPV-PPHQLHLTLLFLGERPEEELPDYLALGHRLARLEAPFRARLRGTGY 79 (198)
T ss_dssp EEEEEEECCHHHHHHHHHHHGGGTT-CTTEEEC-CGGGCEEEEEEEEECCGGGHHHHHHHHHHHHHHSCCEEEEEEEEEE
T ss_pred EEEEEEeCCHHHHHHHHHHHHHhhh-hcCCccc-CCCCCEEEEEeCCcCCHHHHHHHHHHHHHHhccCCCeEEEEcceEE
Confidence 6999999999999999999999976 2222232 5688999999988777654 557788887789999999999999
Q ss_pred eCC--CCcEEEEeecCChhHHHHHHHHHHHHHhc-CCC---CCCCCCCCCccceeeeeccCChhhHHHHHHHHHhCCcce
Q 040775 81 FCN--DNNVLFLAPTPSIPLLQFQSQLCEAFKRE-GIE---CGDEFRPENWIPYCPVAQEVPKTRMAEAFCVLRELKLPV 154 (183)
Q Consensus 81 F~~--~~~vl~l~v~~~~~L~~L~~~l~~~l~~~-~~~---~~~~~~~~~f~PHiTL~~~~~~~~~~~~~~~~~~~~~~~ 154 (183)
|++ +++|||+++ ++++|.+||++|.+.+... |.. +.. ++++|+|||||||...... + +.....++
T Consensus 80 F~~~~~p~vl~l~v-~~~~L~~L~~~l~~~l~~~~g~~~~~~~~--~~~~f~PHiTLar~~~~~~--~----l~~~l~~~ 150 (198)
T 1iuh_A 80 FPNEGTPRVWFAKA-EAEGFLRLAEGLRAGVEELLGEEAVRIPG--WDKPFKPHITLARRKAPAP--R----VPPVLFGL 150 (198)
T ss_dssp ESSSSSCSEEEEEE-ECHHHHHHHHHHHHHHHHHHGGGGGGSTT--TTSCCCCEEEEEEESSCCC--C----CCCCCCCE
T ss_pred CCCCCCCCEEEEEC-CCHHHHHHHHHHHHHHHHhcCCCcccccC--CCCCCCCcEEeEeccCcch--h----HHHhhcCc
Confidence 996 368999999 8889999999999999887 610 111 2457999999999543222 1 11111266
Q ss_pred EEEEeEEEEEeec------CceeEEEEECCCC
Q 040775 155 TGYAMDIGLVEYS------PVRELFSFALGNN 180 (183)
Q Consensus 155 ~~~v~~i~L~~~~------p~~~l~~~~l~~~ 180 (183)
+++|++|+||+|. .|+++++|+|++.
T Consensus 151 ~~~v~~~~L~~S~l~~~G~~y~~l~~~~L~~~ 182 (198)
T 1iuh_A 151 EWPVEGFALVRSELKPKGPVYTVLEKFSLRGE 182 (198)
T ss_dssp EEEECEEEEEEEEECSSSEEEEEEEEEECCCC
T ss_pred eEEecEEEEEEEEeCCCCCeeeEEEEEECCCC
Confidence 8999999999875 3999999999864
No 4
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.96 E-value=6.7e-28 Score=179.64 Aligned_cols=167 Identities=15% Similarity=0.167 Sum_probs=130.7
Q ss_pred eeEEEEEeChhhHHHHHHHHHHHHHccCccccccCCCCCeeEEeecCCCChhH---HHHHHHHhhccCCCeeEEEceeee
Q 040775 4 GYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPTIEPAK---LESIIKIHASKQEPLPLCLSTIGS 80 (183)
Q Consensus 4 ~y~i~l~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~pHiTL~~~~~~~~~~---l~~~l~~~~~~~~pf~l~~~~~g~ 80 (183)
.|+|++.||+++.+.+.++++.+...+....+ .+..++||||.|+++++.+. +.+.++.++...+||+++++|+|+
T Consensus 2 R~Fial~~p~~~~~~l~~~~~~l~~~~~~~~~-v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~~~~pf~l~l~g~g~ 80 (184)
T 1vgj_A 2 RAFIAIDVNESVRDSLVRAQDYIGSKEAKIKF-VERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGV 80 (184)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHCSSSEEEEE-CCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHTTSBCEEEEEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHhhcCCCcEe-cCccccEEEEEeecCCCHHHHHHHHHHHHHHHccCCCeEEEEeeEee
Confidence 69999999999999999999999764212222 24466799999998887754 557788887789999999999999
Q ss_pred eCC--CCcEEEEeecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCccceeeeeccCChh---hHHHHHHHHHhCCcceE
Q 040775 81 FCN--DNNVLFLAPTPSIPLLQFQSQLCEAFKREGIECGDEFRPENWIPYCPVAQEVPKT---RMAEAFCVLRELKLPVT 155 (183)
Q Consensus 81 F~~--~~~vl~l~v~~~~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~PHiTL~~~~~~~---~~~~~~~~~~~~~~~~~ 155 (183)
|++ +++|+|+++.++++|.+|++++.+.+...|.. . +. +|+|||||||..... .+.+.+..+.. ..+.+
T Consensus 81 F~~~~~p~vl~~~v~~~~~L~~L~~~l~~~l~~~g~~--~--~~-~f~PHiTLar~~~~~~~~~~~~~~~~~~~-~~~~~ 154 (184)
T 1vgj_A 81 FPNPNYIRVIWAGIENDEIIREMAREIEDELAKLGFK--K--EG-NFVAHITLGRVKFVKDKLGLTMKLKELAN-EDFGS 154 (184)
T ss_dssp EECSSSEEEEEEEEETCHHHHHHHHHHHHHHHTTTCC--C--CC-CCCCEEEEEEEEEESCHHHHHHHHHHTTT-CEEEE
T ss_pred CCCCCCCcEEEEEecCCHHHHHHHHHHHHHHHHcCCC--C--CC-CccceEEEEeecccCcHHHHHHHHHHhcC-CCCCc
Confidence 986 35899999988899999999999999988732 2 23 699999999943322 34444444332 23458
Q ss_pred EEEeEEEEEeec--C----ceeEEEEEC
Q 040775 156 GYAMDIGLVEYS--P----VRELFSFAL 177 (183)
Q Consensus 156 ~~v~~i~L~~~~--p----~~~l~~~~l 177 (183)
++|++|+|+++. + |+++++|||
T Consensus 155 ~~v~~~~L~~s~~~~~g~~y~~l~~~~L 182 (184)
T 1vgj_A 155 FVVDAIELKKSTLTPKGPIYETLARFEL 182 (184)
T ss_dssp EEECEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEeEEEEEEeeecCCCCceeEEEEEeC
Confidence 899999999875 3 999999999
No 5
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.94 E-value=2.3e-25 Score=168.70 Aligned_cols=170 Identities=14% Similarity=0.180 Sum_probs=126.5
Q ss_pred eeEEEEEeCh-hhHHHHHHHHHHHHHc--cCccccccCCCCCeeEEeecCCCChhHH---HHHHHHhhccC------CCe
Q 040775 4 GYAIELYFDP-ALENQVLKAWNVLARR--QISTQLIEIESRPHITLFSSPTIEPAKL---ESIIKIHASKQ------EPL 71 (183)
Q Consensus 4 ~y~i~l~~~~-~~~~~i~~~~~~l~~~--~~~~~~~~~~~~pHiTL~~~~~~~~~~l---~~~l~~~~~~~------~pf 71 (183)
.|||++.+++ ++.+.+.++++.+... +....+. +..++||||.|+++++.+.+ .+.++.++... +||
T Consensus 4 r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v-~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~~~~~~pf 82 (205)
T 2vfk_A 4 NYFLSIPITNKKITAGIKVLQNSILRQDNRLTKAMV-GDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILEGKHL 82 (205)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHCGGGGGGBC-CTTCCEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHTTTSCC
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHhcCcchHHHhC-CcCccEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 7999999997 8999999999999863 2222232 56889999999998887654 44565555444 999
Q ss_pred eEEEceeeeeCCCCcEEEEeecCC---hhHHHHHHHHHHHHHhcCCCCCCCCCCCCccceeeeeccCCh---h-----hH
Q 040775 72 PLCLSTIGSFCNDNNVLFLAPTPS---IPLLQFQSQLCEAFKREGIECGDEFRPENWIPYCPVAQEVPK---T-----RM 140 (183)
Q Consensus 72 ~l~~~~~g~F~~~~~vl~l~v~~~---~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~PHiTL~~~~~~---~-----~~ 140 (183)
+++++|+|+|++ +|+|+++.++ +.|.+|+++|.+.+...|... . ..++|+|||||||.... . .+
T Consensus 83 ~l~l~g~~~F~~--~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~-~--~~~~f~PHiTlar~~~~~~~~~~~~~~~ 157 (205)
T 2vfk_A 83 TLPFHGIGTFQG--QVGFVKLADGDHVSALLEIAETAKRTFQEKGILA-G--ESRTFKPHLTFMKLSKAPMLWKKGVRKI 157 (205)
T ss_dssp EEEEEEEEEETT--TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCB-C--CSSCCCCCEEEEEGGGCHHHHHTTCSSC
T ss_pred EEEEechhhCCC--cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCc-C--CCCCcceEEEEEecccchhhhhcccccc
Confidence 999999999994 7999999876 689999999999999887421 1 23579999999994221 1 12
Q ss_pred -HHHHHHHHhCCcceEEEEeEEEEEeec-------CceeEEEEECCCC
Q 040775 141 -AEAFCVLRELKLPVTGYAMDIGLVEYS-------PVRELFSFALGNN 180 (183)
Q Consensus 141 -~~~~~~~~~~~~~~~~~v~~i~L~~~~-------p~~~l~~~~l~~~ 180 (183)
.+++..+.. ....+++|++|.|+++. .|+++++|||++.
T Consensus 158 ~~~~l~~~~~-~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L~~~ 204 (205)
T 2vfk_A 158 EPGLYEQFID-HRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK 204 (205)
T ss_dssp CGGGGGGGTT-CEEEEEECCEEEEEESSSCCCTTSCCCEEEEEECSSC
T ss_pred CHHHHHHhcC-CcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEecCCC
Confidence 122222222 22347899999999843 3999999999864
No 6
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=98.52 E-value=5.1e-06 Score=63.74 Aligned_cols=162 Identities=9% Similarity=0.073 Sum_probs=93.3
Q ss_pred eeEEEEEeChh--hHHHHHHHHHHHHHccCcccccc-CCCCCeeEEee--cC--------------CCChhHH----HHH
Q 040775 4 GYAIELYFDPA--LENQVLKAWNVLARRQISTQLIE-IESRPHITLFS--SP--------------TIEPAKL----ESI 60 (183)
Q Consensus 4 ~y~i~l~~~~~--~~~~i~~~~~~l~~~~~~~~~~~-~~~~pHiTL~~--~~--------------~~~~~~l----~~~ 60 (183)
.|.|.--+++. ....+.+++++|.+......... |....|+||+. ++ +.+.+.+ .+.
T Consensus 42 GnTvI~~l~~~s~~~~~l~~iq~~L~~~~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~~~~~~~~ 121 (243)
T 2fsq_A 42 GNTVVCHLVEGSQTESAIVSTRQRFLDMPEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAVTDYYRDR 121 (243)
T ss_dssp EEEEEEEBCTTSHHHHHHHHHHHHHHTSGGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHHHHHHHHH
T ss_pred CCeEEEecCCCChHHHHHHHHHHHHHhccccCceeeCCchhhhhhhccccccccccCCCCCccCcccchHHHHHHHHHHH
Confidence 45566555554 35889999999997644333322 77889999975 21 1112222 223
Q ss_pred HHHhhccCCCeeEEEceeeeeCCCCcEEEEeecCC---hhHHHHHHHHHHHHHhcCCCCCCCCCCCCccceeeeecc---
Q 040775 61 IKIHASKQEPLPLCLSTIGSFCNDNNVLFLAPTPS---IPLLQFQSQLCEAFKREGIECGDEFRPENWIPYCPVAQE--- 134 (183)
Q Consensus 61 l~~~~~~~~pf~l~~~~~g~F~~~~~vl~l~v~~~---~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~PHiTL~~~--- 134 (183)
++... ...||.+++.++. +..|-|.+... ..|.+++++|.+.++-- . +. ...|++||||||.
T Consensus 122 l~~~~-~~~p~~~~v~~l~-----~~~v~L~Pade~~~~~L~~~R~~l~q~lGi~---~-p~--hd~y~fHITLgY~~~~ 189 (243)
T 2fsq_A 122 LSTFP-TLPAFNMRVTGLR-----PVGMVMKGATAEDDSIVALWRDTFADFFGYR---H-PD--HDTYEFHITLSYIVSW 189 (243)
T ss_dssp GGGCC-CCCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHHHHHHHHTCC---C-TT--GGGCCEEEECEEESSC
T ss_pred Hhccc-CCCCeEEEEeccc-----cceEEEecCCHHHHHHHHHHHHHHHHHhCCC---C-CC--CcceEEEEEEEeccCC
Confidence 33333 3478888888882 23555555322 36889999998866421 1 11 2369999999992
Q ss_pred CChhhH---HHHHHHHHh----CCcceEEEEeEEEEEeecC---ceeEEEEECCC
Q 040775 135 VPKTRM---AEAFCVLRE----LKLPVTGYAMDIGLVEYSP---VRELFSFALGN 179 (183)
Q Consensus 135 ~~~~~~---~~~~~~~~~----~~~~~~~~v~~i~L~~~~p---~~~l~~~~l~~ 179 (183)
+++++. .+++..+.. ..+.+ .+....+..++. |..+..+.+.|
T Consensus 190 l~~ee~~~~~~~l~~~~~~l~~~~p~i--~l~~~efc~F~DM~~F~~~~~l~~~~ 242 (243)
T 2fsq_A 190 FEPECLPRWQAMLDEELEKLRVAAPVI--QMRPPAFCEFKDMNHFKELVVFDKRG 242 (243)
T ss_dssp BCGGGHHHHHHHHHHHHHHHHHHCSSC--CBCCCEEEEESSTTCCEEEEECC---
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhCCee--eecCcceEEeCChhhhHHHHhcccCC
Confidence 344433 233333333 22333 456777777763 66665555443
No 7
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=95.36 E-value=0.071 Score=37.85 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=44.2
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCccceeeeec--cCChhhHHH---HHHHHHhCCcceEEEEeEEE
Q 040775 88 LFLAPTPSIPLLQFQSQLCEAFKREGIECGDEFRPENWIPYCPVAQ--EVPKTRMAE---AFCVLRELKLPVTGYAMDIG 162 (183)
Q Consensus 88 l~l~v~~~~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~PHiTL~~--~~~~~~~~~---~~~~~~~~~~~~~~~v~~i~ 162 (183)
+|+.+..++++.+.-.++.+.+... . +...|||||.. .++.+...+ ++..+.....||+.+++++.
T Consensus 3 ~Fiai~~~~~~~~~l~~~~~~~~~~-------~--~~v~pHiTL~f~g~~~~~~~~~l~~~l~~~~~~~~pf~l~l~~~g 73 (171)
T 2d4g_A 3 YGIVLFPSKKLQDLANSYRKRYDPS-------Y--SLIPPHLTLRASFECAEEKADQLVSHLRNIAKESHPLVLKMTKYS 73 (171)
T ss_dssp EEEEBCCCHHHHHHHHHHHHHHCGG-------G--GTSCSCBCCSSCEECCGGGHHHHHHHHHHHHHTCCCEEEEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCcc-------c--CCCCCeEEeecCCcCChHHHHHHHHHHHHHHccCCCEEEEECCcE
Confidence 5778877777766666666655321 1 23677999996 555555544 44444444578888888887
Q ss_pred EEe
Q 040775 163 LVE 165 (183)
Q Consensus 163 L~~ 165 (183)
.+.
T Consensus 74 ~F~ 76 (171)
T 2d4g_A 74 SFA 76 (171)
T ss_dssp ECT
T ss_pred EeC
Confidence 664
No 8
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=94.94 E-value=0.098 Score=38.31 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=44.2
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCcc----ceeeeec--cCChhhHHHHHHHHHh---CCcceEEEE
Q 040775 88 LFLAPTPSIPLLQFQSQLCEAFKREGIECGDEFRPENWI----PYCPVAQ--EVPKTRMAEAFCVLRE---LKLPVTGYA 158 (183)
Q Consensus 88 l~l~v~~~~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~----PHiTL~~--~~~~~~~~~~~~~~~~---~~~~~~~~v 158 (183)
+|+.+..++++.+.-.++++.+.. + . ...|+ |||||.. .++.+.+.++...+.. ...||+.++
T Consensus 3 lFial~~p~~~~~~l~~~~~~l~~-~--~-----~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~~~~~pf~l~l 74 (198)
T 1iuh_A 3 LFYAVFLPEEVRAALVEAQTKVRP-F--R-----GWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLARLEAPFRARL 74 (198)
T ss_dssp EEEEEECCHHHHHHHHHHHGGGTT-C--T-----TEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHHHHSCCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHhhh-h--c-----CCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 577777777666555555554432 1 0 01244 7999997 5666666644444333 357899999
Q ss_pred eEEEEEee
Q 040775 159 MDIGLVEY 166 (183)
Q Consensus 159 ~~i~L~~~ 166 (183)
+++..+..
T Consensus 75 ~g~g~F~~ 82 (198)
T 1iuh_A 75 RGTGYFPN 82 (198)
T ss_dssp EEEEEESS
T ss_pred cceEECCC
Confidence 99988754
No 9
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=93.94 E-value=0.73 Score=33.33 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=27.7
Q ss_pred CccceeeeeccC--ChhhHHHHHHHHHhCCcceEEEEeEEEE
Q 040775 124 NWIPYCPVAQEV--PKTRMAEAFCVLRELKLPVTGYAMDIGL 163 (183)
Q Consensus 124 ~f~PHiTL~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~i~L 163 (183)
++.|||||.-.. ..+++.+.+..+.....||+.++++++-
T Consensus 38 ~~~~HiTLlG~~~~~~~~l~~~L~~~a~~~~pf~l~l~g~g~ 79 (189)
T 1jh6_A 38 RFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVST 79 (189)
T ss_dssp CCCCCEEEEEEEEECHHHHHHHHHHHHHTCBCEEEEEEEEEE
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhhCCCeEEEEcceec
Confidence 489999995332 2445555566665456789999999987
No 10
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=93.76 E-value=0.3 Score=34.88 Aligned_cols=72 Identities=10% Similarity=0.038 Sum_probs=44.8
Q ss_pred EEEeecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCcc-c---eeeeec--cCChhhHHHHHHH---HHhCCcceEEEE
Q 040775 88 LFLAPTPSIPLLQFQSQLCEAFKREGIECGDEFRPENWI-P---YCPVAQ--EVPKTRMAEAFCV---LRELKLPVTGYA 158 (183)
Q Consensus 88 l~l~v~~~~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~-P---HiTL~~--~~~~~~~~~~~~~---~~~~~~~~~~~v 158 (183)
+|+.+..++++.+.-.++.+.+...+ . ...|+ | ||||.. .++.+.+.++... +.....||+.++
T Consensus 3 ~Fial~~p~~~~~~l~~~~~~l~~~~----~---~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~~~~~pf~l~l 75 (184)
T 1vgj_A 3 AFIAIDVNESVRDSLVRAQDYIGSKE----A---KIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKV 75 (184)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHCSSS----E---EEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHHTTSBCEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHHhhcC----C---CcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHHccCCCeEEEE
Confidence 57777777776666666666554321 0 01243 4 999987 5666656544444 433457899999
Q ss_pred eEEEEEee
Q 040775 159 MDIGLVEY 166 (183)
Q Consensus 159 ~~i~L~~~ 166 (183)
+++..+..
T Consensus 76 ~g~g~F~~ 83 (184)
T 1vgj_A 76 KGIGVFPN 83 (184)
T ss_dssp EEEEEEEC
T ss_pred eeEeeCCC
Confidence 99987754
No 11
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=91.97 E-value=0.7 Score=33.60 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=41.2
Q ss_pred EEEEeecCCh-hHHHHHHHHHHHHHhcCCCCCCCCCCCCcc----ceeeeec--cCChhhHHHHHHHHHhC---C-----
Q 040775 87 VLFLAPTPSI-PLLQFQSQLCEAFKREGIECGDEFRPENWI----PYCPVAQ--EVPKTRMAEAFCVLREL---K----- 151 (183)
Q Consensus 87 vl~l~v~~~~-~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~----PHiTL~~--~~~~~~~~~~~~~~~~~---~----- 151 (183)
-+|+++..++ ++.+.-.++.+.+....... ...|+ +||||+. .++.+.+.++...+... .
T Consensus 4 r~Fial~~~~~~~~~~l~~~~~~l~~~~~~~-----~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~~~~~~ 78 (205)
T 2vfk_A 4 NYFLSIPITNKKITAGIKVLQNSILRQDNRL-----TKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKPFVEEILE 78 (205)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHHHHHCGGG-----GGGBCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHHHhcCcch-----HHHhCCcCccEEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677776553 55554444444443210000 01244 4999997 55666666655544441 1
Q ss_pred -cceEEEEeEEEEEe
Q 040775 152 -LPVTGYAMDIGLVE 165 (183)
Q Consensus 152 -~~~~~~v~~i~L~~ 165 (183)
.||+.+++++..+.
T Consensus 79 ~~pf~l~l~g~~~F~ 93 (205)
T 2vfk_A 79 GKHLTLPFHGIGTFQ 93 (205)
T ss_dssp TSCCEEEEEEEEEET
T ss_pred CCCcEEEEechhhCC
Confidence 67888888887764
No 12
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=89.55 E-value=0.64 Score=35.40 Aligned_cols=77 Identities=12% Similarity=-0.029 Sum_probs=43.7
Q ss_pred EEEEEeC-hhhHHHHHHHHHHHHHccCccccccCCCCCeeEEee-cCCCCh---hHH----HHHHHHhhccCCCeeEEEc
Q 040775 6 AIELYFD-PALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPTIEP---AKL----ESIIKIHASKQEPLPLCLS 76 (183)
Q Consensus 6 ~i~l~~~-~~~~~~i~~~~~~l~~~~~~~~~~~~~~~pHiTL~~-~~~~~~---~~l----~~~l~~~~~~~~pf~l~~~ 76 (183)
.|.|.|- ++..++|+++++.|.+..+-....+....+||||+- +...+. ..+ .+..+.+....+.++|.--
T Consensus 142 ~v~L~Pade~~~~~L~~~R~~l~q~lGi~~p~hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~~~l~~~~p~i~l~~~ 221 (243)
T 2fsq_A 142 GMVMKGATAEDDSIVALWRDTFADFFGYRHPDHDTYEFHITLSYIVSWFEPECLPRWQAMLDEELEKLRVAAPVIQMRPP 221 (243)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHHHTCCCTTGGGCCEEEECEEESSCBCGGGHHHHHHHHHHHHHHHHHHCSSCCBCCC
T ss_pred eEEEecCCHHHHHHHHHHHHHHHHHhCCCCCCCcceEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHHHhhCCeeeecCc
Confidence 4556554 666799999999999863311111235889999953 322222 223 3334444444555555544
Q ss_pred eeeeeC
Q 040775 77 TIGSFC 82 (183)
Q Consensus 77 ~~g~F~ 82 (183)
.+..|.
T Consensus 222 efc~F~ 227 (243)
T 2fsq_A 222 AFCEFK 227 (243)
T ss_dssp EEEEES
T ss_pred ceEEeC
Confidence 555555
No 13
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=69.02 E-value=21 Score=23.75 Aligned_cols=72 Identities=10% Similarity=0.169 Sum_probs=46.6
Q ss_pred eeEEEEEeChhhHHHHHHHHHHHHHcc---Ccccccc-CCCCCeeEEeecCCCChhHHHHHHHHhhccCCCeeEEE
Q 040775 4 GYAIELYFDPALENQVLKAWNVLARRQ---ISTQLIE-IESRPHITLFSSPTIEPAKLESIIKIHASKQEPLPLCL 75 (183)
Q Consensus 4 ~y~i~l~~~~~~~~~i~~~~~~l~~~~---~~~~~~~-~~~~pHiTL~~~~~~~~~~l~~~l~~~~~~~~pf~l~~ 75 (183)
+|.+=+|||++..+...++++++.+.. +..+..+ ....||-+-.+--..+.+...+.+.=+.....+++|=+
T Consensus 12 ~yHaHVYfd~~~~~~A~~Lre~i~~~F~~~l~vgr~~~~pVGPHp~~s~qv~f~~~~f~~~v~WL~~nrg~LsVLi 87 (117)
T 2p8i_A 12 SWHAHVYFDASSRDAAWTLREQIEAHWSGKLQLGRFHERPVGPHPMWSYQLAFTQEQFADLVGWLTLNHGALDIFL 87 (117)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHHHTTTCSEECCCBSSCCTTCSSEEEEEEECHHHHHHHHHHHHHHCTTCCEEE
T ss_pred ceEEEEecCHHHHHHHHHHHHHHHHhccccEeEecCccccCCCCCCceEEEEcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 899999999999999999999999864 2222222 56788977743212455555444444444455555544
No 14
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=63.30 E-value=26 Score=23.48 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=55.4
Q ss_pred eeEEEEEeChhhHHHHHHHHHHHHHcc-Ccccccc-CCCCCeeEEeecCCCChhHHHHHHHHhhccCCCeeEEEceeee-
Q 040775 4 GYAIELYFDPALENQVLKAWNVLARRQ-ISTQLIE-IESRPHITLFSSPTIEPAKLESIIKIHASKQEPLPLCLSTIGS- 80 (183)
Q Consensus 4 ~y~i~l~~~~~~~~~i~~~~~~l~~~~-~~~~~~~-~~~~pHiTL~~~~~~~~~~l~~~l~~~~~~~~pf~l~~~~~g~- 80 (183)
+|.+=+|||++..+...++++++.+.. +..+..+ ....||-+-.+--..+.+...+.+.=+.....+++|=+-....
T Consensus 11 ~yHaHVYfd~~~~~~A~~Lre~i~~~F~l~vgr~h~~pVGPHp~~s~qv~f~~~~f~~~v~WL~lnrg~LsVLiHP~Tgd 90 (122)
T 2peb_A 11 GFHAHVYFDAASRDVAARVREGLGARFEVQLGRWFDKPIGPHPKGMYQVAFLPNQFDKVVPWLMLNREGLDILVHPETGD 90 (122)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHHHHSCCEEEEEESSCCTTCSSEEEEEEECGGGHHHHHHHHHHHCTTCCEEEEEESSC
T ss_pred ceEEEEecCHHhHHHHHHHHHHHHHhcCeeecCCccccCCCCCCceEEEEcCHHHHHHHHHHHHHhCCCceEEECCCCCc
Confidence 899999999999999999999999763 3222222 5688997773311234444444444444445666666543321
Q ss_pred --eCCCCcEEEEeec
Q 040775 81 --FCNDNNVLFLAPT 93 (183)
Q Consensus 81 --F~~~~~vl~l~v~ 93 (183)
-......+|++-.
T Consensus 91 dl~DHt~~A~WlG~~ 105 (122)
T 2peb_A 91 AVSDHAVYSLWLGAA 105 (122)
T ss_dssp HHHHHHTSCEEESSC
T ss_pred hhhhhhhhceecCCc
Confidence 1112467888753
No 15
>2llz_A Uncharacterized protein YJDK; RNAse, biofilm, unknown function; NMR {Escherichia coli}
Probab=54.26 E-value=40 Score=21.62 Aligned_cols=76 Identities=11% Similarity=0.269 Sum_probs=56.1
Q ss_pred eeEEEEEeChhhHHHHHHHHHHHHHccCccccccCCCCCee----EEeecCCCChhHHHHHHHHhhcc--CCCeeEEEce
Q 040775 4 GYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHI----TLFSSPTIEPAKLESIIKIHASK--QEPLPLCLST 77 (183)
Q Consensus 4 ~y~i~l~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~pHi----TL~~~~~~~~~~l~~~l~~~~~~--~~pf~l~~~~ 77 (183)
.|-|.+.+.++.-..+.++.+.|...|...-.......||- |..+...++.+.+++....++.. -..++|.+.-
T Consensus 11 ~YVVTf~y~e~~Lt~~~eL~~~lt~aGF~ttl~D~~G~pHeLgtNsFgliS~l~~~ev~~La~~L~e~Alg~~pev~v~T 90 (100)
T 2llz_A 11 TYVVSFDYPSSYSSVFLRLRSLMYDMNFSSIVADEYGIPRQLNENSFAITTSLAASEIEDLIRLKCLDLPDIDFDLNIMT 90 (100)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHTTEESEEECSSSCEEECTTTEEEECCCSCHHHHHHHHHHGGGTSSCCCCEEEEEE
T ss_pred EEEEEEEecccchHHHHHHHHHHHhCCceeEeecCCCCceeccccceeeeccCCHHHHHHHHHHHHHhhcCCCCceeEee
Confidence 79999999999999999999999998765544445677774 34455778888888877777733 2455666654
Q ss_pred ee
Q 040775 78 IG 79 (183)
Q Consensus 78 ~g 79 (183)
+.
T Consensus 91 ~e 92 (100)
T 2llz_A 91 VD 92 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 16
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=45.12 E-value=9.8 Score=26.47 Aligned_cols=33 Identities=12% Similarity=0.188 Sum_probs=20.8
Q ss_pred EEeecCChhHHHHHHHHHHHHHhcCCCCCCCCCCCCccceeeeec
Q 040775 89 FLAPTPSIPLLQFQSQLCEAFKREGIECGDEFRPENWIPYCPVAQ 133 (183)
Q Consensus 89 ~l~v~~~~~L~~L~~~l~~~l~~~~~~~~~~~~~~~f~PHiTL~~ 133 (183)
++.....+.+.+|-+.|+. +++.+|.||.+.+-
T Consensus 43 ~V~~~d~~~a~~LD~~LW~------------~~~~sFlPH~~~~~ 75 (150)
T 3sxu_A 43 LIACEDEKQAYRLDEALWA------------RPAESFVPHNLAGE 75 (150)
T ss_dssp EEECSSHHHHHHHHHHTTT------------SSTTCCCCEEETTC
T ss_pred EEECCCHHHHHHHHHHHhC------------CCCCcccCCccCCC
Confidence 4444333456666666653 35678999998764
No 17
>2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2
Probab=36.52 E-value=1e+02 Score=21.11 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=23.0
Q ss_pred eeEE--eecCCCChhHHHHHHHHhhccCCC-eeEEE-ceeeeeCCCCcEEEEeec
Q 040775 43 HITL--FSSPTIEPAKLESIIKIHASKQEP-LPLCL-STIGSFCNDNNVLFLAPT 93 (183)
Q Consensus 43 HiTL--~~~~~~~~~~l~~~l~~~~~~~~p-f~l~~-~~~g~F~~~~~vl~l~v~ 93 (183)
+|++ +..+.-|++++.++|..+. ++ .++.. ..-|+|++.-.++-..+.
T Consensus 8 ~I~i~a~v~~TED~eKV~~Al~nif---p~~~~i~~~~~~G~~Gn~i~il~~~i~ 59 (146)
T 2ogk_A 8 WVRVSAVVHSTEDREKVGEAISTLF---PFEFEIAVSKAKGHYGNPMEYLEVELT 59 (146)
T ss_dssp EEEEEEEECTTSCHHHHHHHHGGGC---SSCCCCEEEC--------CEEEEEEEC
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHhC---CCCCceEEEEeeeeccCcEEEEEEEee
Confidence 5666 3346668888999998885 33 34443 335788842233344443
No 18
>4fmw_A RNA (guanine-9-)-methyltransferase domain-contain protein 2; structural genomics, structural genomics consortium, SGC, RN modification; HET: SAH; 2.00A {Homo sapiens}
Probab=34.59 E-value=37 Score=24.68 Aligned_cols=78 Identities=9% Similarity=0.050 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHccCccccccCCCCCeeEEeecCCCChhHHHHHHHHhhccCCC-eeEEEce---eeeeCCCCcEEEE
Q 040775 15 LENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPTIEPAKLESIIKIHASKQEP-LPLCLST---IGSFCNDNNVLFL 90 (183)
Q Consensus 15 ~~~~i~~~~~~l~~~~~~~~~~~~~~~pHiTL~~~~~~~~~~l~~~l~~~~~~~~p-f~l~~~~---~g~F~~~~~vl~l 90 (183)
....+..+..|+...+..... ...|.|+++..++ ..+.+.+.....++.. ..+++.. ...|+. ..+|||
T Consensus 34 ~~kE~~sl~~Ql~~~y~~nRr--~~~p~~l~~t~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~iVYL 106 (197)
T 4fmw_A 34 VLKDIKKLHKQIQRCYAENRR--ALHPVQFYLTSHG----GQLKKNMDENDKGWVNWKDIHIKPEHYSELIKK-EDLIYL 106 (197)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CSSCCEEEEESCC----HHHHHHHHHHCGGGGTCSSCEECSSCHHHHSCG-GGEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHc--CCCCceEEEeCCC----hHHHHHHHHhhccCccccceeecCccHHHhCCc-ccEEEE
Confidence 446677777777765432222 3588999987654 2344555544322222 1344432 233553 578999
Q ss_pred eecCChhHH
Q 040775 91 APTPSIPLL 99 (183)
Q Consensus 91 ~v~~~~~L~ 99 (183)
+++....|.
T Consensus 107 tpDs~~~L~ 115 (197)
T 4fmw_A 107 TSDSPNILK 115 (197)
T ss_dssp CTTCSCBCC
T ss_pred CCCchhhhh
Confidence 887665554
No 19
>2wny_A MTH_689, conserved protein MTH689; unknown function, exosome superoperon; 1.95A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=28.31 E-value=1.4e+02 Score=20.25 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=41.5
Q ss_pred CeeEE--eecCCCChhHHHHHHHHhhccCCCeeEEEceeeeeCCCCcEEEEeec--CChhHHHHHHHHHHHHHhc
Q 040775 42 PHITL--FSSPTIEPAKLESIIKIHASKQEPLPLCLSTIGSFCNDNNVLFLAPT--PSIPLLQFQSQLCEAFKRE 112 (183)
Q Consensus 42 pHiTL--~~~~~~~~~~l~~~l~~~~~~~~pf~l~~~~~g~F~~~~~vl~l~v~--~~~~L~~L~~~l~~~l~~~ 112 (183)
-+|++ +..+.-|++++.++|..+.... ++-.-..-|+|+ +++..+... ....+..+++.|.+.+...
T Consensus 9 ~~V~i~a~v~~TED~eKV~~Al~nifp~~--~~~~~~~~G~~g--n~I~il~~~~~~~~~~~~~~~~l~~~ld~~ 79 (141)
T 2wny_A 9 HNISYCLMVYGTEDEEKVIEALRNVIPGA--TPERESAEGYHG--NPITVLRGRLDRRRALREFMEKFTEVFRGR 79 (141)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHTTTSTTC--CCEEEEEECGGG--CEEEEEEEEECCHHHHHHHHHHHHHHHTTC
T ss_pred EEEEEEEEEcCCCCHHHHHHHHHHhCCcc--cceeEEeccccC--CceEEEEEEecCcHHHHHHHHHHHHHHHHH
Confidence 45666 3346668888999998875321 111233446777 355445443 3367899999998876543
No 20
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A*
Probab=28.06 E-value=1.5e+02 Score=24.77 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=39.5
Q ss_pred EEEEeC-hhhHHHHHHHHHHHHHc-cCccccccCCC---CCeeEEeecCCCChhHHHHHHHHhhc
Q 040775 7 IELYFD-PALENQVLKAWNVLARR-QISTQLIEIES---RPHITLFSSPTIEPAKLESIIKIHAS 66 (183)
Q Consensus 7 i~l~~~-~~~~~~i~~~~~~l~~~-~~~~~~~~~~~---~pHiTL~~~~~~~~~~l~~~l~~~~~ 66 (183)
+.+.+| .+....+.++.+.|.+. |... .+ ... ++|+++.+-++++++.+.+.++.+..
T Consensus 308 lgVR~DSGD~~~~~~~vr~~Ld~~fG~~~-n~-~G~kvl~~~~~Ii~Sd~Lde~~~~~ii~~l~~ 370 (484)
T 3dhf_A 308 LIIRPDSGNPLDTVLKVLEILGKKFPVTE-NS-KGYKLLPPYLRVIQGDGVDINTLQEIVEGMKQ 370 (484)
T ss_dssp EEEECCSSCHHHHHHHHHHHHHHHSCCEE-CT-TSCEECCTTEEEEECSSCSHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHhCCcc-cc-cccccCCCCEEEEEcCCCCHHHHHHHHHHHHh
Confidence 477887 44556677788888773 3321 10 122 56999999999999998877777763
No 21
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=26.16 E-value=66 Score=18.43 Aligned_cols=25 Identities=4% Similarity=0.218 Sum_probs=20.3
Q ss_pred ceeEEEEEeChhhHHHHHHHHHHHH
Q 040775 3 QGYAIELYFDPALENQVLKAWNVLA 27 (183)
Q Consensus 3 ~~y~i~l~~~~~~~~~i~~~~~~l~ 27 (183)
..|.|.++|+.|-.+.++++.++-.
T Consensus 14 ~~~~Vs~Y~SkEey~~L~klA~eE~ 38 (66)
T 2k1o_A 14 RNFSVTFYLSKEEHDVLRRLADEEV 38 (66)
T ss_dssp CCEEEEEEEEHHHHHHHHHHHHTTC
T ss_pred cceEEEEEecHHHHHHHHHHHHHHH
Confidence 4799999999999888888776533
No 22
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=20.00 E-value=1.4e+02 Score=18.19 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=39.4
Q ss_pred cCCCChhHHHHHHHHhhccCCCeeEEEceeeeeCCCCcEEEEeecCChhHHHHHHHHHHHHHhc
Q 040775 49 SPTIEPAKLESIIKIHASKQEPLPLCLSTIGSFCNDNNVLFLAPTPSIPLLQFQSQLCEAFKRE 112 (183)
Q Consensus 49 ~~~~~~~~l~~~l~~~~~~~~pf~l~~~~~g~F~~~~~vl~l~v~~~~~L~~L~~~l~~~l~~~ 112 (183)
|..+.+.++..-++. +-.-.+.+.|+|.|+-+.+=+-+.-..+..-...-.+|.+.+...
T Consensus 4 Fk~Y~P~~IAK~Vkt----lF~Gri~I~g~G~FeFd~GkillP~~~d~~~~~~~sEIN~~I~~L 63 (78)
T 2jro_A 4 FPVYAPKLIVKHARI----FLTGVIWVKDLGRLEFEKGRFLLPRKSLPKVKQAILELNELIEAQ 63 (78)
T ss_dssp ESSCCHHHHHHHHHH----HCSEEEEETTTEEEEEETTEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHH----HccceEEEEecccEEEcCCEEeCCccccHHHHHHHHHHHHHHHHH
Confidence 344556555544444 456789999999999655666555455666666677777666655
Done!