Query 040777
Match_columns 380
No_of_seqs 480 out of 2679
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 11:43:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01471 PG_binding_1: Putativ 99.5 1.6E-14 3.5E-19 107.6 6.9 57 169-228 1-57 (57)
2 TIGR02869 spore_SleB spore cor 99.4 1.2E-12 2.6E-17 122.1 8.7 71 160-233 3-73 (201)
3 COG0484 DnaJ DnaJ-class molecu 99.2 2.8E-11 6E-16 121.7 6.0 86 283-380 121-209 (371)
4 PRK14282 chaperone protein Dna 99.1 1.2E-10 2.7E-15 117.6 6.7 83 283-380 136-221 (369)
5 TIGR02349 DnaJ_bact chaperone 99.0 2.6E-10 5.6E-15 114.5 6.4 83 283-380 127-212 (354)
6 PRK14276 chaperone protein Dna 99.0 2.6E-10 5.5E-15 115.8 6.1 83 283-380 130-215 (380)
7 PF00684 DnaJ_CXXCXGXG: DnaJ c 99.0 4.5E-10 9.7E-15 87.0 5.8 62 307-378 1-66 (66)
8 PRK14296 chaperone protein Dna 99.0 4.1E-10 9E-15 114.0 6.6 83 283-380 133-218 (372)
9 PRK14277 chaperone protein Dna 99.0 3.7E-10 8E-15 114.8 6.2 83 283-380 139-224 (386)
10 PRK14278 chaperone protein Dna 99.0 4.2E-10 9.2E-15 114.2 6.3 83 283-380 123-208 (378)
11 PRK14280 chaperone protein Dna 99.0 3.9E-10 8.5E-15 114.3 6.0 83 283-380 127-212 (376)
12 PRK14298 chaperone protein Dna 99.0 5.8E-10 1.3E-14 113.1 6.2 83 283-380 125-210 (377)
13 PRK14297 chaperone protein Dna 98.9 9.8E-10 2.1E-14 111.5 6.2 83 283-380 132-217 (380)
14 PRK14287 chaperone protein Dna 98.9 1.1E-09 2.3E-14 111.0 6.1 83 283-380 122-207 (371)
15 PRK14293 chaperone protein Dna 98.9 1.6E-09 3.4E-14 109.8 6.3 83 283-380 127-212 (374)
16 PRK14289 chaperone protein Dna 98.9 1.1E-09 2.5E-14 111.2 5.1 87 284-380 134-223 (386)
17 PRK14281 chaperone protein Dna 98.9 1.7E-09 3.6E-14 110.5 6.1 85 284-380 143-231 (397)
18 PTZ00037 DnaJ_C chaperone prot 98.9 1.8E-09 3.9E-14 111.1 6.0 82 283-380 134-220 (421)
19 PRK14279 chaperone protein Dna 98.9 2E-09 4.3E-14 109.8 5.8 79 283-380 157-238 (392)
20 PRK14300 chaperone protein Dna 98.9 2.1E-09 4.6E-14 108.8 5.8 79 283-380 129-210 (372)
21 PRK14286 chaperone protein Dna 98.9 2.3E-09 5E-14 108.6 5.8 79 283-380 134-215 (372)
22 COG3409 Putative peptidoglycan 98.9 4.4E-09 9.5E-14 94.4 6.9 69 161-232 36-106 (185)
23 PLN03165 chaperone protein dna 98.9 1.7E-09 3.6E-14 92.2 3.8 56 323-380 43-98 (111)
24 PRK14284 chaperone protein Dna 98.9 2.5E-09 5.4E-14 109.0 5.6 79 283-380 142-223 (391)
25 PRK14285 chaperone protein Dna 98.9 2.5E-09 5.5E-14 108.1 5.5 79 283-380 130-211 (365)
26 PRK14301 chaperone protein Dna 98.8 3.1E-09 6.6E-14 107.8 5.8 79 283-380 128-209 (373)
27 PRK14294 chaperone protein Dna 98.8 4.7E-09 1E-13 106.1 6.3 79 283-380 128-209 (366)
28 PRK14283 chaperone protein Dna 98.8 3.8E-09 8.2E-14 107.2 5.4 87 284-380 126-215 (378)
29 PRK10767 chaperone protein Dna 98.8 4.2E-09 9.2E-14 106.5 5.5 83 284-380 122-207 (371)
30 KOG0712 Molecular chaperone (D 98.8 3.5E-09 7.7E-14 105.4 4.3 83 283-380 111-198 (337)
31 PRK14288 chaperone protein Dna 98.8 6.8E-09 1.5E-13 105.1 6.1 78 283-380 124-204 (369)
32 PRK14291 chaperone protein Dna 98.8 7E-09 1.5E-13 105.4 6.0 79 283-380 140-220 (382)
33 PRK14295 chaperone protein Dna 98.8 5.7E-09 1.2E-13 106.3 4.9 82 284-380 146-231 (389)
34 PRK10594 murein L,D-transpepti 98.8 1.6E-08 3.5E-13 107.5 8.0 67 160-229 231-341 (608)
35 PRK14290 chaperone protein Dna 98.7 1.2E-08 2.7E-13 103.0 5.8 84 284-380 129-217 (365)
36 PRK14292 chaperone protein Dna 98.7 1.8E-08 3.9E-13 101.9 5.6 83 283-380 123-209 (371)
37 COG2989 Uncharacterized protei 98.5 1.9E-07 4E-12 97.4 7.4 73 158-230 226-298 (561)
38 COG3409 Putative peptidoglycan 98.3 1.3E-06 2.9E-11 78.2 6.4 64 163-229 120-184 (185)
39 PF08823 PG_binding_2: Putativ 98.1 7.3E-06 1.6E-10 65.2 6.3 58 168-228 13-74 (74)
40 COG1107 Archaea-specific RecJ- 98.0 3.4E-06 7.4E-11 88.7 3.6 59 322-380 3-80 (715)
41 KOG2813 Predicted molecular ch 97.9 4E-06 8.6E-11 82.7 2.4 20 359-378 247-266 (406)
42 KOG2813 Predicted molecular ch 97.8 1.1E-05 2.4E-10 79.6 3.1 25 356-380 233-257 (406)
43 COG1107 Archaea-specific RecJ- 97.8 1.1E-05 2.4E-10 85.0 2.4 58 307-375 5-87 (715)
44 PLN03165 chaperone protein dna 97.7 3.4E-05 7.4E-10 66.0 4.1 47 302-369 40-98 (111)
45 COG3023 ampD N-acetyl-anhydrom 97.3 0.00046 1E-08 66.6 5.8 54 171-229 198-252 (257)
46 COG0484 DnaJ DnaJ-class molecu 97.1 0.00026 5.6E-09 72.0 2.6 46 165-216 13-58 (371)
47 PF00684 DnaJ_CXXCXGXG: DnaJ c 97.1 0.00036 7.8E-09 54.0 2.7 11 370-380 43-53 (66)
48 KOG2824 Glutaredoxin-related p 96.8 0.0011 2.3E-08 64.7 4.0 50 323-375 231-280 (281)
49 PRK14279 chaperone protein Dna 96.6 0.0012 2.5E-08 67.8 2.7 65 283-380 152-224 (392)
50 TIGR02349 DnaJ_bact chaperone 96.5 0.0013 2.7E-08 66.4 2.0 67 283-380 122-198 (354)
51 PRK14301 chaperone protein Dna 96.4 0.002 4.4E-08 65.6 2.5 65 283-380 123-195 (373)
52 PRK14286 chaperone protein Dna 96.3 0.0024 5.2E-08 65.0 2.6 65 283-380 129-201 (372)
53 PRK14300 chaperone protein Dna 96.3 0.0022 4.9E-08 65.2 2.4 63 283-380 124-196 (372)
54 PRK14284 chaperone protein Dna 96.2 0.0025 5.5E-08 65.3 2.4 65 283-380 137-209 (391)
55 PRK14282 chaperone protein Dna 96.2 0.0029 6.4E-08 64.3 2.8 67 283-380 131-207 (369)
56 PRK14276 chaperone protein Dna 96.2 0.0031 6.6E-08 64.4 2.6 67 283-380 125-201 (380)
57 PRK14287 chaperone protein Dna 96.2 0.003 6.4E-08 64.4 2.5 67 283-380 117-193 (371)
58 PRK14296 chaperone protein Dna 96.2 0.003 6.5E-08 64.4 2.5 67 283-380 128-204 (372)
59 PRK10767 chaperone protein Dna 96.1 0.0033 7.1E-08 63.9 2.7 22 359-380 161-193 (371)
60 PRK14278 chaperone protein Dna 96.1 0.0032 6.9E-08 64.3 2.5 69 283-380 118-194 (378)
61 PRK14297 chaperone protein Dna 96.1 0.0033 7.1E-08 64.2 2.4 67 283-380 127-203 (380)
62 PRK14285 chaperone protein Dna 96.1 0.0035 7.6E-08 63.7 2.6 62 283-380 125-197 (365)
63 PRK14298 chaperone protein Dna 96.1 0.004 8.6E-08 63.6 2.9 67 283-380 120-196 (377)
64 PRK14295 chaperone protein Dna 96.0 0.0036 7.7E-08 64.2 2.5 11 370-380 207-217 (389)
65 PRK14294 chaperone protein Dna 96.0 0.004 8.7E-08 63.2 2.6 65 283-380 123-195 (366)
66 PRK14280 chaperone protein Dna 96.0 0.0038 8.2E-08 63.7 2.3 67 283-380 122-198 (376)
67 PRK14291 chaperone protein Dna 96.0 0.0043 9.3E-08 63.4 2.5 61 283-379 135-206 (382)
68 PRK14277 chaperone protein Dna 95.9 0.0043 9.3E-08 63.5 2.5 67 283-380 134-210 (386)
69 cd03031 GRX_GRX_like Glutaredo 95.9 0.0072 1.6E-07 54.1 3.3 48 322-371 100-147 (147)
70 PRK14288 chaperone protein Dna 95.8 0.0061 1.3E-07 62.1 2.8 61 283-380 119-190 (369)
71 PRK14289 chaperone protein Dna 95.7 0.0063 1.4E-07 62.2 2.5 46 321-380 154-209 (386)
72 PRK14283 chaperone protein Dna 95.5 0.0069 1.5E-07 61.8 2.1 73 283-369 130-215 (378)
73 PF09374 PG_binding_3: Predict 95.4 0.014 3E-07 46.1 3.1 27 203-229 1-31 (72)
74 PRK14281 chaperone protein Dna 95.4 0.0096 2.1E-07 61.2 2.7 11 370-380 207-217 (397)
75 PTZ00037 DnaJ_C chaperone prot 95.3 0.011 2.4E-07 61.3 2.9 67 283-380 129-204 (421)
76 PRK14290 chaperone protein Dna 95.3 0.011 2.4E-07 60.0 2.8 11 370-380 193-203 (365)
77 TIGR02642 phage_xxxx uncharact 95.2 0.011 2.3E-07 55.1 2.0 11 359-369 117-127 (186)
78 PRK14293 chaperone protein Dna 94.8 0.019 4E-07 58.6 2.7 67 283-380 122-198 (374)
79 PRK14292 chaperone protein Dna 94.0 0.023 5E-07 57.7 1.3 39 306-344 159-209 (371)
80 TIGR02642 phage_xxxx uncharact 93.8 0.031 6.8E-07 52.0 1.6 16 198-213 33-48 (186)
81 KOG0715 Molecular chaperone (D 93.4 0.038 8.2E-07 54.7 1.6 24 308-331 168-191 (288)
82 COG1198 PriA Primosomal protei 86.1 0.92 2E-05 50.4 4.7 55 291-366 423-484 (730)
83 KOG0712 Molecular chaperone (D 86.0 0.53 1.1E-05 47.7 2.6 66 283-379 106-181 (337)
84 TIGR00595 priA primosomal prot 85.3 0.91 2E-05 48.2 4.1 56 290-366 200-262 (505)
85 PF09374 PG_binding_3: Predict 84.7 0.9 1.9E-05 35.8 2.8 29 172-205 2-30 (72)
86 PF02344 Myc-LZ: Myc leucine z 84.4 2.5 5.5E-05 28.4 4.3 30 70-99 1-30 (32)
87 TIGR00630 uvra excinuclease AB 83.6 0.46 9.9E-06 54.1 1.0 33 335-369 739-771 (924)
88 PRK05580 primosome assembly pr 81.8 1.5 3.3E-05 48.3 4.1 43 290-341 368-417 (679)
89 KOG1565 Gelatinase A and relat 78.4 3.4 7.4E-05 43.7 5.2 58 172-230 29-87 (469)
90 PRK14873 primosome assembly pr 77.3 2.3 4.9E-05 46.9 3.7 45 286-339 366-417 (665)
91 PRK00349 uvrA excinuclease ABC 76.0 1.1 2.4E-05 51.2 0.9 33 335-369 741-773 (943)
92 PRK00635 excinuclease ABC subu 74.4 1.4 3E-05 53.5 1.2 32 335-368 1610-1641(1809)
93 TIGR00630 uvra excinuclease AB 73.3 1.9 4.2E-05 49.2 1.9 23 357-379 736-770 (924)
94 cd03031 GRX_GRX_like Glutaredo 70.9 2.9 6.4E-05 37.4 2.2 36 331-380 98-145 (147)
95 COG0178 UvrA Excinuclease ATPa 70.2 1.8 3.9E-05 48.5 0.8 31 335-367 733-763 (935)
96 COG0178 UvrA Excinuclease ATPa 66.6 3.4 7.3E-05 46.5 1.9 23 357-379 730-764 (935)
97 COG3926 zliS Lysozyme family p 66.5 5.9 0.00013 38.2 3.3 27 203-229 95-125 (252)
98 KOG2824 Glutaredoxin-related p 66.3 3.9 8.5E-05 40.4 2.1 34 333-380 230-274 (281)
99 PF07092 DUF1356: Protein of u 65.2 3.8 8.2E-05 39.7 1.8 25 322-346 28-52 (238)
100 PRK00349 uvrA excinuclease ABC 64.8 3.5 7.5E-05 47.3 1.7 23 357-379 738-772 (943)
101 PRK00635 excinuclease ABC subu 63.1 4.6 0.0001 49.2 2.3 8 324-331 723-730 (1809)
102 KOG0715 Molecular chaperone (D 61.3 4.2 9.1E-05 40.3 1.4 55 321-380 164-229 (288)
103 PF08232 Striatin: Striatin fa 61.2 10 0.00022 33.4 3.6 22 77-98 18-39 (134)
104 PF11336 DUF3138: Protein of u 59.5 19 0.00042 37.8 5.7 21 79-99 27-47 (514)
105 COG1198 PriA Primosomal protei 58.3 7.4 0.00016 43.4 2.7 48 321-377 435-484 (730)
106 PRK14714 DNA polymerase II lar 55.1 8.2 0.00018 45.3 2.5 32 303-340 667-700 (1337)
107 TIGR00595 priA primosomal prot 54.1 8.7 0.00019 40.9 2.3 49 320-377 212-262 (505)
108 PRK04023 DNA polymerase II lar 53.7 9.3 0.0002 43.9 2.6 37 296-338 619-657 (1121)
109 PF13901 DUF4206: Domain of un 53.4 4.9 0.00011 37.7 0.3 49 321-375 142-196 (202)
110 PF04216 FdhE: Protein involve 50.8 8.9 0.00019 37.7 1.7 12 199-210 105-116 (290)
111 PRK04023 DNA polymerase II lar 50.2 16 0.00035 42.0 3.7 47 319-377 624-672 (1121)
112 PRK05580 primosome assembly pr 50.1 10 0.00022 41.8 2.2 49 320-377 380-430 (679)
113 COG3926 zliS Lysozyme family p 49.6 16 0.00034 35.4 3.0 36 170-210 94-129 (252)
114 PRK00488 pheS phenylalanyl-tRN 47.8 8.2 0.00018 39.3 0.9 25 163-187 101-128 (339)
115 PRK05978 hypothetical protein; 46.6 9.7 0.00021 34.4 1.1 7 358-364 53-59 (148)
116 PRK14873 primosome assembly pr 45.6 16 0.00035 40.3 2.9 48 320-377 382-431 (665)
117 KOG3054 Uncharacterized conser 45.2 3.2E+02 0.0069 27.0 11.6 41 172-213 231-273 (299)
118 PF07295 DUF1451: Protein of u 41.6 22 0.00047 32.0 2.5 14 285-298 95-108 (146)
119 COG3058 FdhE Uncharacterized p 41.3 6.4 0.00014 39.1 -1.0 30 172-211 102-131 (308)
120 TIGR03655 anti_R_Lar restricti 41.0 23 0.00049 26.0 2.2 11 322-332 2-12 (53)
121 PF15616 TerY-C: TerY-C metal 40.3 26 0.00055 31.1 2.7 14 322-335 78-92 (131)
122 TIGR02098 MJ0042_CXXC MJ0042 f 39.5 26 0.00056 23.6 2.1 6 359-364 27-32 (38)
123 PF03833 PolC_DP2: DNA polymer 38.8 10 0.00022 42.8 0.0 17 359-375 682-699 (900)
124 PF07092 DUF1356: Protein of u 38.6 16 0.00034 35.5 1.2 16 319-334 36-51 (238)
125 PF08273 Prim_Zn_Ribbon: Zinc- 38.3 16 0.00035 25.8 0.9 12 322-333 4-15 (40)
126 PF12387 Peptidase_C74: Pestiv 35.5 27 0.00058 32.5 2.1 10 359-368 177-186 (200)
127 PRK11032 hypothetical protein; 35.4 30 0.00064 31.7 2.4 14 285-298 107-120 (160)
128 smart00778 Prim_Zn_Ribbon Zinc 35.1 28 0.00061 24.2 1.7 13 322-334 4-16 (37)
129 PF11932 DUF3450: Protein of u 34.7 1.3E+02 0.0029 28.7 7.0 46 54-99 26-71 (251)
130 PF14353 CpXC: CpXC protein 34.4 42 0.0009 28.7 3.1 44 322-369 2-50 (128)
131 PF06637 PV-1: PV-1 protein (P 32.9 72 0.0016 33.2 4.9 37 63-99 342-378 (442)
132 PF08232 Striatin: Striatin fa 32.5 80 0.0017 27.8 4.6 32 68-99 16-47 (134)
133 PF03589 Antiterm: Antitermina 31.5 22 0.00048 29.6 0.9 12 358-369 33-44 (95)
134 PF05988 DUF899: Bacterial pro 31.5 40 0.00087 32.2 2.7 57 71-143 8-66 (211)
135 PRK03564 formate dehydrogenase 30.5 65 0.0014 32.5 4.2 41 303-344 187-238 (309)
136 PRK03564 formate dehydrogenase 29.8 55 0.0012 33.0 3.5 10 174-183 105-114 (309)
137 PF12808 Mto2_bdg: Micro-tubul 28.7 40 0.00087 25.3 1.7 26 72-97 10-35 (52)
138 PF08898 DUF1843: Domain of un 28.0 66 0.0014 24.2 2.8 24 76-99 30-53 (53)
139 PF10454 DUF2458: Protein of u 26.2 4.3E+02 0.0094 23.7 8.3 31 57-89 27-57 (150)
140 PHA00626 hypothetical protein 26.0 62 0.0014 24.7 2.4 16 323-338 13-29 (59)
141 PF07295 DUF1451: Protein of u 24.7 46 0.001 29.9 1.7 37 288-332 104-141 (146)
142 TIGR01562 FdhE formate dehydro 24.1 68 0.0015 32.2 3.0 27 317-343 206-235 (305)
143 KOG4260 Uncharacterized conser 24.0 38 0.00083 33.8 1.2 29 308-338 156-184 (350)
144 COG4312 Uncharacterized protei 23.8 93 0.002 30.2 3.7 28 74-101 17-46 (247)
145 PF12172 DUF35_N: Rubredoxin-l 23.1 64 0.0014 21.7 1.8 27 331-365 7-33 (37)
146 KOG0642 Cell-cycle nuclear pro 23.1 56 0.0012 35.4 2.2 19 71-89 35-53 (577)
147 PRK14892 putative transcriptio 23.0 59 0.0013 27.4 2.0 8 321-328 21-28 (99)
148 KOG1025 Epidermal growth facto 22.7 38 0.00083 38.8 1.0 45 285-342 518-562 (1177)
149 PRK14714 DNA polymerase II lar 22.6 83 0.0018 37.5 3.6 45 321-377 667-718 (1337)
150 PF02344 Myc-LZ: Myc leucine z 22.5 2.3E+02 0.0051 19.2 4.3 26 64-89 2-27 (32)
151 PTZ00368 universal minicircle 22.3 1.3E+02 0.0028 26.4 4.1 12 358-369 104-115 (148)
152 PLN03188 kinesin-12 family pro 22.1 1.5E+02 0.0033 35.3 5.5 67 165-234 1188-1257(1320)
153 PF05129 Elf1: Transcription e 20.8 46 0.001 26.9 0.9 17 321-337 22-38 (81)
154 PF07754 DUF1610: Domain of un 20.7 70 0.0015 20.3 1.5 6 358-363 17-22 (24)
155 PF06524 NOA36: NOA36 protein; 20.4 50 0.0011 32.7 1.1 52 309-364 163-216 (314)
156 PRK11032 hypothetical protein; 20.4 70 0.0015 29.2 2.1 41 285-333 112-154 (160)
157 TIGR00757 RNaseEG ribonuclease 20.3 46 0.00099 34.8 0.9 13 357-369 390-402 (414)
158 PF13453 zf-TFIIB: Transcripti 20.3 69 0.0015 22.1 1.6 7 359-365 21-27 (41)
159 PRK00488 pheS phenylalanyl-tRN 20.3 43 0.00094 34.2 0.7 19 357-378 260-278 (339)
160 COG4416 Com Mu-like prophage p 20.3 41 0.0009 25.5 0.4 10 358-367 25-34 (60)
No 1
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=99.54 E-value=1.6e-14 Score=107.65 Aligned_cols=57 Identities=39% Similarity=0.612 Sum_probs=52.9
Q ss_pred ChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHH
Q 040777 169 EGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESL 228 (380)
Q Consensus 169 ~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L 228 (380)
++++|.+||.+|..+||+.+.+||.| |+.|++||++||+.+||++||++|+.||++|
T Consensus 1 ~~~~v~~lq~~L~~~gy~~~~~~g~~---~~~t~~Av~~fQ~~~gL~~tG~~d~~T~~~L 57 (57)
T PF01471_consen 1 SGPDVKALQQYLNRLGYYPGPVDGIF---DPETREAVKAFQKANGLPVTGVVDPETWEAL 57 (57)
T ss_dssp BSHHHHHHHHHHHHTTTT-SSTTSBS---HHHHHHHHHHHHHHTTS-SSSSBCHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCCCCCCCc---CHHHHHHHHHHHHHcCcCCCCccCHHHHhcC
Confidence 47899999999999999999999998 9999999999999999999999999999987
No 2
>TIGR02869 spore_SleB spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination.
Probab=99.38 E-value=1.2e-12 Score=122.11 Aligned_cols=71 Identities=28% Similarity=0.404 Sum_probs=66.2
Q ss_pred cCCccCCCCChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhCCC
Q 040777 160 KRKALRVGSEGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYMEHR 233 (380)
Q Consensus 160 ~~~~Lk~G~~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~~~ 233 (380)
..++|+.|+.+++|.+||++|..+||+.+.+||.| |..|++||+.||+.+||++||++|+.||.+|+....
T Consensus 3 ~~~~l~~G~~g~~V~~LQ~~L~~lG~~~g~idG~f---g~~T~~AV~~FQ~~~GL~~dG~vg~~T~~~L~~~~~ 73 (201)
T TIGR02869 3 AVQTYQRGSTGSDVIEIQRRLKAWGYYNGKVDGVF---GWLTYWAVRKFQSKNGLTVDGIVGPKTKAALGIATT 73 (201)
T ss_pred CcccCCCCCCcHHHHHHHHHHHHcCCCCCCCCCcc---CHHHHHHHHHHHHHhCCCCCCCcCHHHHHHhCCccc
Confidence 35689999999999999999999999999999998 999999999999999999999999999999975433
No 3
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.8e-11 Score=121.75 Aligned_cols=86 Identities=21% Similarity=0.510 Sum_probs=70.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
.+++++...|++.+.....+....|..|+|+|++.+....+|++|+|+|.+.-.+ +. +++.+ +++|+.
T Consensus 121 ~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~-------~~--g~~~~---~~~C~~ 188 (371)
T COG0484 121 NLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQ-------RT--GFFSF---QQTCPT 188 (371)
T ss_pred EEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEE-------ee--eEEEE---EEECCC
Confidence 4666777777777777777777777999999999999999999999999987766 44 44444 579999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ +|+.|+|.|++
T Consensus 189 C~G~G~~i~~pC~~C~G~G~v 209 (371)
T COG0484 189 CNGTGKIIKDPCGKCKGKGRV 209 (371)
T ss_pred CccceeECCCCCCCCCCCCeE
Confidence 9999999 99999999974
No 4
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.2e-10 Score=117.63 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=68.2
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.+.+....+|+.|+|.|.+...+ ++.+|++++ +.+|+.
T Consensus 136 lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~G~~~~---~~~C~~ 200 (369)
T PRK14282 136 LSDLINGAEIPVEYDR----YETC-PHCGGTGVEPGSGYVTCPKCHGTGRIREER-------RSFFGVFVS---ERTCER 200 (369)
T ss_pred HHHhcCCeEEEEEeee----cccC-CCCCccCCCCCCCCcCCCCCCCcCEEEEEE-------EccCcceEE---EEECCC
Confidence 4455556555555555 5666 999999999888889999999999998888 777888776 569999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|+|++
T Consensus 201 C~G~G~~~~~~C~~C~G~g~v 221 (369)
T PRK14282 201 CGGTGKIPGEYCHECGGSGRI 221 (369)
T ss_pred CCCcceeCCCCCCCCCCceeE
Confidence 9999998 99999999864
No 5
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.04 E-value=2.6e-10 Score=114.48 Aligned_cols=83 Identities=23% Similarity=0.383 Sum_probs=67.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.........|..|+|.|.+.-.. .+++|++++ +++|+.
T Consensus 127 Lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~g~~~~---~~~C~~ 191 (354)
T TIGR02349 127 FEEAVFGVEKEIEIPR----KESC-ETCHGTGAKPGTDPKTCPTCGGTGQVRRQQ-------GTPFGFFQQ---QQTCPT 191 (354)
T ss_pred HHHHhCCeeEEEEeec----CCcC-CCCCCCCCCCCCCCccCCCCCCeeEEEEEE-------eccCCceEE---EEecCC
Confidence 4455566555555555 5566 999999999888788999999999988777 777888876 569999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|+|++
T Consensus 192 C~G~G~~~~~~C~~C~G~g~v 212 (354)
T TIGR02349 192 CGGEGKIIKEPCSTCKGKGRV 212 (354)
T ss_pred CCCcceecCCCCCCCCCCcEe
Confidence 9999998 99999999874
No 6
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.03 E-value=2.6e-10 Score=115.78 Aligned_cols=83 Identities=18% Similarity=0.349 Sum_probs=66.2
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.+.+.....|+.|+|.|.+...+ ++.+|++++ +.+|+.
T Consensus 130 Lee~~~G~~~~i~~~~----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~G~~~~---~~~C~~ 194 (380)
T PRK14276 130 FEEAIFGKEKEVSYNR----EATC-HTCNGSGAKPGTSPVTCGKCHGSGVITVDT-------QTPLGMMRR---QVTCDV 194 (380)
T ss_pred HHHhcCCeEEEEEeec----cccC-CCCcCcccCCCCCCccCCCCCCeeEEEEEE-------ecCCceEEE---EEECCC
Confidence 4455555555555555 5556 999999999888888999999999988877 666777765 569999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|.|++
T Consensus 195 C~G~G~~~~~~C~~C~G~g~~ 215 (380)
T PRK14276 195 CHGTGKEIKEPCQTCHGTGHE 215 (380)
T ss_pred CCCCCccccCCCCCCCCceEE
Confidence 9999998 99999999874
No 7
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=99.03 E-value=4.5e-10 Score=87.03 Aligned_cols=62 Identities=26% Similarity=0.579 Sum_probs=47.1
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee----eCCCCCCce
Q 040777 307 GRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT----ICDVCEGKA 378 (380)
Q Consensus 307 ~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~----~C~~C~G~G 378 (380)
|..|+|+|++++....+|+.|+|+|+++-.+ + .++++.++ +++|+.|+|+|++ +|+.|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~-~~~~~~~~--~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQ-------Q-TPGGVFQM--QQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEE-------E-SSSTTEEE--EEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEE-------e-CCCeEEEE--EEECCCCcceeeEECCCCCCCCCCcC
Confidence 4789999998888899999999999988877 5 34444444 6899999999999 699999986
No 8
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=4.1e-10 Score=114.02 Aligned_cols=83 Identities=19% Similarity=0.325 Sum_probs=64.6
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|++.+....+|+.|+|+|.++-.+ ++++.++ ++ +.+|+.
T Consensus 133 lee~~~G~~~~i~~~~----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~g~~~~-q~--~~~C~~ 197 (372)
T PRK14296 133 FKELLFGVDKIIELDL----LTNC-SKCFGSGAESNSDIHICNNCHGTGEVLVQK-------NMGFFQF-QQ--SAKCNV 197 (372)
T ss_pred HHHhhCCeeEEEEEee----eecc-CCCCCCccCCCCCCccCCCCCCCceEEEEE-------eccceEE-EE--EecCCC
Confidence 4455555555555555 5666 999999999888889999999999988776 5555333 33 679999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|.|++
T Consensus 198 C~G~G~~~~~~C~~C~G~g~v 218 (372)
T PRK14296 198 CNGAGKIIKNKCKNCKGKGKY 218 (372)
T ss_pred cCCcceeecccccCCCCceEE
Confidence 9999999 89999999864
No 9
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=3.7e-10 Score=114.84 Aligned_cols=83 Identities=19% Similarity=0.320 Sum_probs=69.3
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.........|..|+|.|.+.-.+ ++.+|++++. .+|+.
T Consensus 139 Lee~~~G~~~~v~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~G~~~~~---~~C~~ 203 (386)
T PRK14277 139 FEEAAFGTEKEIEVER----FEKC-DVCKGSGAKPGSKPVTCPVCHGTGQVRTRQ-------NTPFGRIVNI---RTCDR 203 (386)
T ss_pred HHHHhCCeEEEEEEEe----eccC-CCCCCCCcCCCCCCccCCCCCCEEEEEEEE-------eccCceEEEE---EECCC
Confidence 5566677666666666 6677 999999999888788999999999988777 7777887763 69999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|.+ .|+.|+|+|++
T Consensus 204 C~G~G~~~~~~C~~C~G~g~v 224 (386)
T PRK14277 204 CHGEGKIITDPCNKCGGTGRI 224 (386)
T ss_pred CCcceeeccCCCCCCCCCcEE
Confidence 9999999 99999999874
No 10
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=4.2e-10 Score=114.15 Aligned_cols=83 Identities=19% Similarity=0.372 Sum_probs=64.3
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ ..+| ..|+|+|++++....+|+.|+|+|.+.-.. ...+|++++ ..+|+.
T Consensus 123 Lee~~~G~~~~i~~~~----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~g~~~~---~~~C~~ 187 (378)
T PRK14278 123 LEECATGVTKQVTVDT----AVLC-DRCHGKGTAGDSKPVTCDTCGGRGEVQTVQ-------RSFLGQVMT---SRPCPT 187 (378)
T ss_pred HHHhcCCeEEEEEEEe----eccC-CCCcCccCCCCCCceecCCccCceEEEEEE-------eccceeEEE---EEECCC
Confidence 4455555555555555 5566 999999999888888999999999876665 444566655 468999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|.|++ .|+.|+|+|++
T Consensus 188 C~G~G~~~~~~C~~C~G~g~v 208 (378)
T PRK14278 188 CRGVGEVIPDPCHECAGDGRV 208 (378)
T ss_pred CCccceeeCCCCCCCCCceeE
Confidence 9999998 99999999874
No 11
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.00 E-value=3.9e-10 Score=114.28 Aligned_cols=83 Identities=20% Similarity=0.371 Sum_probs=65.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|...+.....|+.|+|.|.+.-.+ ++.+|++++ +.+|+.
T Consensus 127 Lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~g~~~~---~~~C~~ 191 (376)
T PRK14280 127 FEEAVFGKEKEIEIPK----EETC-DTCHGSGAKPGTSKETCSHCGGSGQVSVEQ-------NTPFGRVVN---RQTCPH 191 (376)
T ss_pred HHHHhCCceeEEEEee----eccC-CCCCCcccCCCCCCccCCCCCCEEEEEEEe-------ecCCceEEE---EEEcCC
Confidence 4455555555555555 5556 999999998888788999999999887666 666777765 579999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|+|++
T Consensus 192 C~G~G~~~~~~C~~C~G~g~v 212 (376)
T PRK14280 192 CNGTGQEIKEKCPTCHGKGKV 212 (376)
T ss_pred CCCCCceecCCCCCCCCceEE
Confidence 9999998 99999999874
No 12
>PRK14298 chaperone protein DnaJ; Provisional
Probab=98.98 E-value=5.8e-10 Score=113.15 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=63.4
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ ..+| ..|+|+|++.+.....|+.|+|.|.+.-.+ +...+++ ++ +++|+.
T Consensus 125 lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~g~~-~~--~~~C~~ 189 (377)
T PRK14298 125 LEEAAFGVRKDIDVPR----AERC-STCSGTGAKPGTSPKRCPTCGGTGQVTTTR-------STPLGQF-VT--TTTCST 189 (377)
T ss_pred HHHhhCCeEEEEEEEe----eccC-CCCCCCcccCCCCCCcCCCCCCccEEEEEE-------ecCceeE-EE--EEeCCC
Confidence 4455555555555555 5555 999999999888888999999999887665 4333343 44 789999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|+|++
T Consensus 190 C~G~G~~~~~~C~~C~G~g~v 210 (377)
T PRK14298 190 CHGRGQVIESPCPVCSGTGKV 210 (377)
T ss_pred CCCCCcccCCCCCCCCCccEE
Confidence 9999998 99999999874
No 13
>PRK14297 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=9.8e-10 Score=111.51 Aligned_cols=83 Identities=20% Similarity=0.325 Sum_probs=64.4
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ ..+| ..|+|+|.+.+.....|+.|+|.|.+.-.+ ++.+|++++ +.+|+.
T Consensus 132 Lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~G~~~~---~~~C~~ 196 (380)
T PRK14297 132 FEEAVFGVEKEISVTR----NENC-ETCNGTGAKPGTSPKTCDKCGGTGQIRVQR-------NTPLGSFVS---TTTCDK 196 (380)
T ss_pred HHHhcCCeEEEEEeee----eccC-CCcccccccCCCcCccCCCccCeEEEEEEE-------EcCCceeEE---EEeCCC
Confidence 4455555555555555 5555 999999999888788999999999887766 455566554 579999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|.+ .|..|+|+|++
T Consensus 197 C~G~G~~~~~~C~~C~G~g~v 217 (380)
T PRK14297 197 CGGSGKVIEDPCNKCHGKGKV 217 (380)
T ss_pred CCCCceEcCCCCCCCCCCeEE
Confidence 9999999 99999999863
No 14
>PRK14287 chaperone protein DnaJ; Provisional
Probab=98.93 E-value=1.1e-09 Score=111.00 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=65.7
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.+.......|+.|+|.|++.-.+ ++.+|++++ ..+|+.
T Consensus 122 lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~G~~~~---~~~C~~ 186 (371)
T PRK14287 122 FKEAVFGKETEIEIPR----EETC-GTCHGSGAKPGTKPETCSHCGGSGQLNVEQ-------NTPFGRVVN---RRVCHH 186 (371)
T ss_pred HHHhcCCeEEEEEEee----eccC-CCCCCcccCCCCCCcccCCCCCEEEEEEEE-------ecCCceEEE---EEeCCC
Confidence 4455555555555555 5556 999999998887788999999999887776 677777765 569999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|.|+|++ .|..|+|.|++
T Consensus 187 C~G~G~~~~~~C~~C~G~g~v 207 (371)
T PRK14287 187 CEGTGKIIKQKCATCGGKGKV 207 (371)
T ss_pred CCCCCccccccCCCCCCeeEE
Confidence 9999998 99999998864
No 15
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.91 E-value=1.6e-09 Score=109.81 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=67.2
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.........|..|+|.|.+.-.. .+.+|++++ ..+|+.
T Consensus 127 Lee~~~G~~k~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~g~~~~---~~~C~~ 191 (374)
T PRK14293 127 FREAIFGGEKEIRIPH----LETC-ETCRGSGAKPGTGPTTCSTCGGAGQVRRAT-------RTPFGSFTQ---VSECPT 191 (374)
T ss_pred HHHHhCCceEEEEeec----cccC-CCCCCcCCCCCCCCeeCCCCCCcceEEEEE-------ecCcceEEE---EeeCCC
Confidence 4566666666666555 6666 999999998888788999999999887776 666777776 479999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|.|++ .|..|+|+|++
T Consensus 192 C~G~G~~~~~~C~~C~G~g~v 212 (374)
T PRK14293 192 CNGTGQVIEDPCDACGGQGVK 212 (374)
T ss_pred CCcceeEeccCCCCCCCCccc
Confidence 9999999 99999999874
No 16
>PRK14289 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=1.1e-09 Score=111.19 Aligned_cols=87 Identities=22% Similarity=0.482 Sum_probs=66.6
Q ss_pred eecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCC
Q 040777 284 VDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYC 363 (380)
Q Consensus 284 ~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C 363 (380)
+.|++.++|.+.+.....+....|..|+|+|.........|+.|+|.|.+.-.+ ++.+|+++. ..+|+.|
T Consensus 134 l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~G~~~~---~~~C~~C 203 (386)
T PRK14289 134 VKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQ-------NTILGTMQT---QSTCPTC 203 (386)
T ss_pred EEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEE-------ecccceEEE---EEecCCC
Confidence 444444555554444444444444999999999888889999999999988877 666777764 6799999
Q ss_pred CCCcee---eCCCCCCceeC
Q 040777 364 EGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 364 ~G~G~~---~C~~C~G~G~v 380 (380)
+|.|.+ .|+.|+|+|++
T Consensus 204 ~G~G~~~~~~C~~C~G~g~v 223 (386)
T PRK14289 204 NGEGKIIKKKCKKCGGEGIV 223 (386)
T ss_pred CccccccCcCCCCCCCCcEE
Confidence 999998 99999999874
No 17
>PRK14281 chaperone protein DnaJ; Provisional
Probab=98.90 E-value=1.7e-09 Score=110.47 Aligned_cols=85 Identities=24% Similarity=0.358 Sum_probs=63.1
Q ss_pred eecccceeeeeccceeecc-cccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 284 VDLSERRVFLLGENRWEEP-SRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 284 ~~ls~~rv~~l~e~rwe~p-~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++|++..+|.+.+..+..+ .++| ..|+|+|.+.+ ....|..|+|.|.++-.. ++.+|++++ +.+|+.
T Consensus 143 l~vtLee~~~G~~~~i~~~r~~~C-~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~-------~~~~g~~~~---~~~C~~ 210 (397)
T PRK14281 143 LKLTLEEIAKGVEKTLKIKKQVPC-KECNGTGSKTG-ATETCPTCHGSGEVRQAS-------KTMFGQFVN---ITACPT 210 (397)
T ss_pred EEeEHHHHhCCeEEEEEEEeeecC-CCCCCcccCCC-CCccCCCCCCCcEEEEEE-------ecccceEEE---EEecCC
Confidence 3444444444444444444 4555 99999999876 577899999999887666 556666665 469999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|.+ .|+.|+|+|++
T Consensus 211 C~G~G~~~~~~C~~C~G~g~v 231 (397)
T PRK14281 211 CGGEGRVVKDRCPACYGEGIK 231 (397)
T ss_pred CcceeeeeCCCCCCCCCCccE
Confidence 9999998 99999999874
No 18
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.89 E-value=1.8e-09 Score=111.07 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=60.5
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ ..+| ..|+|+|++.+ ....|+.|+|.|..+-.. ++++ |++++ +++|+.
T Consensus 134 Lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~-------~~g~-~~~q~--~~~C~~ 197 (421)
T PTZ00037 134 LEQIYNGAMRKLAINK----DVIC-ANCEGHGGPKD-AFVDCKLCNGQGIRVQIR-------QMGS-MIHQT--QSTCNS 197 (421)
T ss_pred HHHHhCCCceEEEeec----cccc-cccCCCCCCCC-CCccCCCCCCCCeEEEEE-------eecc-eeeEE--EEeCCC
Confidence 4455555555555555 5555 99999998654 578899999999866555 4444 44444 679999
Q ss_pred CCCCcee-----eCCCCCCceeC
Q 040777 363 CEGLGYT-----ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~-----~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|.|++
T Consensus 198 C~G~G~~i~~~~~C~~C~G~g~v 220 (421)
T PTZ00037 198 CNGQGKIIPESKKCKNCSGKGVK 220 (421)
T ss_pred CCCcceeccccccCCcCCCccee
Confidence 9999997 69999999874
No 19
>PRK14279 chaperone protein DnaJ; Provisional
Probab=98.88 E-value=2e-09 Score=109.79 Aligned_cols=79 Identities=20% Similarity=0.428 Sum_probs=59.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|++.+.....|+.|+|.|.+.-.. +++++ +++|+.
T Consensus 157 Lee~~~G~~~~v~~~~----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----------g~~~~---~~~C~~ 217 (392)
T PRK14279 157 FVEAAKGVTMPLRLTS----PAPC-TTCHGSGARPGTSPKVCPTCNGSGVISRNQ-----------GAFGF---SEPCTD 217 (392)
T ss_pred HHHHhCCeEEEEeeec----cccC-CCCccccccCCCCCCCCCCCcceEEEEEEe-----------cceEE---EEecCC
Confidence 4455555555555555 5566 999999999888888999999999876543 23332 578999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|..|+|+|++
T Consensus 218 C~G~G~~i~~~C~~C~G~g~v 238 (392)
T PRK14279 218 CRGTGSIIEDPCEECKGTGVT 238 (392)
T ss_pred CCceeEEeCCcCCCCCCCeEE
Confidence 9999999 99999999864
No 20
>PRK14300 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=2.1e-09 Score=108.84 Aligned_cols=79 Identities=19% Similarity=0.306 Sum_probs=60.9
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++++|....+..++ .+.| ..|+|+|...+.....|+.|+|.|.+.+.. ||+++ ..+|+.
T Consensus 129 Lee~~~G~~k~i~~~r----~~~C-~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~-----------g~~~~---~~~C~~ 189 (372)
T PRK14300 129 LEEAFHGIEKNISFSS----EVKC-DTCHGSGSEKGETVTTCDACSGVGATRMQQ-----------GFFTI---EQACHK 189 (372)
T ss_pred HHHHhCCceEEEEeee----cccc-CCCCCcccCCCCCCccCCCccCeEEEEEee-----------ceEEE---EEeCCC
Confidence 4455555555555555 5555 999999998888788999999999877642 45553 569999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|.|++ .|+.|+|+|++
T Consensus 190 C~G~G~~~~~~C~~C~G~g~v 210 (372)
T PRK14300 190 CQGNGQIIKNPCKKCHGMGRY 210 (372)
T ss_pred CCccceEeCCCCCCCCCceEE
Confidence 9999999 99999999874
No 21
>PRK14286 chaperone protein DnaJ; Provisional
Probab=98.87 E-value=2.3e-09 Score=108.63 Aligned_cols=79 Identities=23% Similarity=0.490 Sum_probs=59.9
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.+.......|+.|+|.|.++-.. |+++. +++|+.
T Consensus 134 Lee~~~G~~k~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-----------G~~~~---~~~C~~ 194 (372)
T PRK14286 134 LEDAALGREYKIEIPR----LESC-VDCNGSGASKGSSPTTCPDCGGSGQIRRTQ-----------GFFSV---ATTCPT 194 (372)
T ss_pred HHHHhCCeeEEEEeec----cccC-CCCcCCCcCCCCCCccCCCCcCeEEEEEEe-----------ceEEE---EEeCCC
Confidence 4455555555555555 5566 999999998887778899999999765543 34443 569999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|+|++
T Consensus 195 C~G~G~~~~~~C~~C~G~g~~ 215 (372)
T PRK14286 195 CRGKGTVISNPCKTCGGQGLQ 215 (372)
T ss_pred CCceeeEecccCCCCCCCcEE
Confidence 9999998 99999999874
No 22
>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]
Probab=98.86 E-value=4.4e-09 Score=94.37 Aligned_cols=69 Identities=30% Similarity=0.476 Sum_probs=63.6
Q ss_pred CCccCCCCChHhHHHHHHHHHHcCCCC-CCCCCcccCCCHHHHHHHHHHHHHcCC-CCCCccCHHHHHHHhhCC
Q 040777 161 RKALRVGSEGEDVKAMQEELLKLGFFS-GEEDMEYSSFSTGTERAVKTWQAAMGV-TEDGIMTSELLESLYMEH 232 (380)
Q Consensus 161 ~~~Lk~G~~g~~V~~LQ~~L~~lGy~~-g~vDG~f~~Fg~~T~~AVk~FQ~~~GL-~~DGivg~~T~~~L~~~~ 232 (380)
......+..+..|..||..|+.+||+. +.+||.| |+.|..||+.||+.+|| ++||++++.|+.+|....
T Consensus 36 ~~~~~~~~~~~~v~~lq~~L~~~g~~~~~~~dg~~---g~~t~~av~~fQ~~~gl~~~dG~~g~~t~~al~~~~ 106 (185)
T COG3409 36 DPVLTLGAEGPSVRILQAALNALGYYPDGVIDGVY---GPETAAAVRAFQQKNGLSPVDGIVGPATRAALPSQL 106 (185)
T ss_pred ccccccCCCCchHHHHHHHHHhcCCCCCCCccCcc---CcccHHHHHHHhhhcCcccccccccHHHHHHHHHHh
Confidence 455666779999999999999999999 9999999 99999999999999999 899999999999999644
No 23
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=98.86 E-value=1.7e-09 Score=92.22 Aligned_cols=56 Identities=32% Similarity=0.710 Sum_probs=35.2
Q ss_pred cCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCceeeCCCCCCceeC
Q 040777 323 QCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYTICDVCEGKAVV 380 (380)
Q Consensus 323 ~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~~C~~C~G~G~v 380 (380)
.|..|+|+|...|..|+|+|.+....+..+++ +.+|+.|+|.|+..|+.|+|+|++
T Consensus 43 ~C~~C~GsG~~~C~~C~G~G~v~~~~~g~~q~--~~~C~~C~G~Gk~~C~~C~G~G~~ 98 (111)
T PLN03165 43 PCFPCSGTGAQVCRFCVGSGNVTVELGGGEKE--VSKCINCDGAGSLTCTTCQGSGIQ 98 (111)
T ss_pred CCCCCCCCCCcCCCCCcCcCeEEEEeCCcEEE--EEECCCCCCcceeeCCCCCCCEEE
Confidence 34444444444455555555443211111222 578999999999999999999874
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=98.86 E-value=2.5e-09 Score=108.96 Aligned_cols=79 Identities=20% Similarity=0.442 Sum_probs=59.0
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|++.+.....|+.|+|.|.+.-.. |++++ +.+|+.
T Consensus 142 lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-----------G~~~~---~~~C~~ 202 (391)
T PRK14284 142 FEEAAKGVEKELLVSG----YKSC-DACSGSGANSSQGIKVCDRCKGSGQVVQSR-----------GFFSM---ASTCPE 202 (391)
T ss_pred HHHHhCCeeEEEEEee----eccC-CCCcccccCCCCCCeecCccCCeeEEEEEe-----------ceEEE---EEECCC
Confidence 3444555554444444 4555 999999999888888999999999876433 34443 568999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|.|++ .|+.|+|+|++
T Consensus 203 C~G~G~~~~~~C~~C~G~g~v 223 (391)
T PRK14284 203 CGGEGRVITDPCSVCRGQGRI 223 (391)
T ss_pred CCCCCcccCCcCCCCCCccee
Confidence 9999998 99999999864
No 25
>PRK14285 chaperone protein DnaJ; Provisional
Probab=98.85 E-value=2.5e-09 Score=108.06 Aligned_cols=79 Identities=27% Similarity=0.446 Sum_probs=59.7
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ ..+| ..|+|+|...+.....|+.|+|.|.+.- .+||++ + +++|+.
T Consensus 130 lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~-----------~~G~~~-~--~~~C~~ 190 (365)
T PRK14285 130 LEDAYLGYKNNINITR----NMLC-ESCLGKKSEKGTSPSICNMCNGSGRVMQ-----------GGGFFR-V--TTTCPK 190 (365)
T ss_pred HHHhhCCeEEEEEeee----cccC-CCCCCcccCCCCCCccCCCccCceeEEe-----------cCceeE-E--eeecCC
Confidence 4455555555555555 5566 9999999988777788999998887652 235653 3 679999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|.|++ .|..|+|+|++
T Consensus 191 C~G~G~~~~~~C~~C~G~g~v 211 (365)
T PRK14285 191 CYGNGKIISNPCKSCKGKGSL 211 (365)
T ss_pred CCCcccccCCCCCCCCCCCEE
Confidence 9999998 99999999864
No 26
>PRK14301 chaperone protein DnaJ; Provisional
Probab=98.84 E-value=3.1e-09 Score=107.75 Aligned_cols=79 Identities=20% Similarity=0.462 Sum_probs=60.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.+.......|+.|+|.|.+.-.. |++++ +++|+.
T Consensus 128 Lee~~~G~~k~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~-----------G~~~~---~~~C~~ 188 (373)
T PRK14301 128 FRQAAKGDEVTLRIPK----NVTC-DDCGGSGAAPGTSPETCRHCGGSGQVRQSQ-----------GFFQI---AVPCPV 188 (373)
T ss_pred HHHHhCCceEEEEeee----cccC-CCCCCcccCCCCCCcccCCccCeeEEEEEe-----------eeEEE---EEeCCC
Confidence 4556666666555555 5666 999999998887788899999999876432 34443 579999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|.|++ .|+.|+|+|++
T Consensus 189 C~G~G~~~~~~C~~C~G~g~v 209 (373)
T PRK14301 189 CRGEGRVITHPCPKCKGSGIV 209 (373)
T ss_pred CCceeeecCCCCCCCCCCcee
Confidence 9999998 99999999874
No 27
>PRK14294 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=4.7e-09 Score=106.09 Aligned_cols=79 Identities=20% Similarity=0.485 Sum_probs=60.4
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.........|+.|+|.|.+.-.. |+++ + +++|+.
T Consensus 128 lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----------G~~~-~--~~~C~~ 188 (366)
T PRK14294 128 FLEAAFGTEKEIRIQK----LETC-EECHGSGCEPGTSPTTCPQCGGSGQVTQSQ-----------GFFS-I--RTTCPR 188 (366)
T ss_pred HHHhcCCeEEEEEeee----cccC-CCCCCccccCCCCcccCCCcCCeEEEEEEe-----------eeEE-E--EeeCCC
Confidence 4455555555555555 6666 999999998888788899999999875332 4554 3 679999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|+|++
T Consensus 189 C~G~G~~~~~~C~~C~G~g~v 209 (366)
T PRK14294 189 CRGMGKVIVSPCKTCHGQGRV 209 (366)
T ss_pred CCCcCeecCcCCCCCCCceEe
Confidence 9999999 99999999874
No 28
>PRK14283 chaperone protein DnaJ; Provisional
Probab=98.82 E-value=3.8e-09 Score=107.20 Aligned_cols=87 Identities=22% Similarity=0.334 Sum_probs=64.5
Q ss_pred eecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCC
Q 040777 284 VDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYC 363 (380)
Q Consensus 284 ~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C 363 (380)
++|++.++|.+.......+....|..|+|+|...+.....|+.|+|.|.+.-.+ ++.+|++++ ..+|+.|
T Consensus 126 l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-------~~~~g~~~~---~~~C~~C 195 (378)
T PRK14283 126 VEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVR-------NTILGQMMN---VTTCPDC 195 (378)
T ss_pred eeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCccEEEEEE-------eccCceEEE---EEECCCC
Confidence 344444444444444333333444999999998888888999999999987766 566677665 4699999
Q ss_pred CCCcee---eCCCCCCceeC
Q 040777 364 EGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 364 ~G~G~~---~C~~C~G~G~v 380 (380)
+|.|+. .|..|+|+|++
T Consensus 196 ~G~G~~~~~~C~~C~G~g~v 215 (378)
T PRK14283 196 QGEGKIVEKPCSNCHGKGVV 215 (378)
T ss_pred CccceecCCCCCCCCCceee
Confidence 999998 99999999874
No 29
>PRK10767 chaperone protein DnaJ; Provisional
Probab=98.81 E-value=4.2e-09 Score=106.50 Aligned_cols=83 Identities=22% Similarity=0.479 Sum_probs=60.8
Q ss_pred eecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCC
Q 040777 284 VDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYC 363 (380)
Q Consensus 284 ~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C 363 (380)
++|++..+|.+....+..+....|..|+|+|...+.....|+.|+|.|.+.-.. ||++. +.+|+.|
T Consensus 122 l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----------g~~~~---~~~C~~C 187 (371)
T PRK10767 122 MEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQ-----------GFFTV---QQTCPTC 187 (371)
T ss_pred EEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCeeEEEEee-----------ceEEE---EEeCCCC
Confidence 444555555555555444444444999999998887788899999999866443 34442 5699999
Q ss_pred CCCcee---eCCCCCCceeC
Q 040777 364 EGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 364 ~G~G~~---~C~~C~G~G~v 380 (380)
+|+|++ .|+.|+|+|++
T Consensus 188 ~G~G~~~~~~C~~C~G~g~v 207 (371)
T PRK10767 188 HGRGKIIKDPCKKCHGQGRV 207 (371)
T ss_pred CCceeECCCCCCCCCCCceE
Confidence 999998 99999999864
No 30
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=3.5e-09 Score=105.42 Aligned_cols=83 Identities=27% Similarity=0.476 Sum_probs=70.5
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|.+...++..++ +.|| +.|.|+|.+++. ...|..|.|.|...-.+ +++|+|.+++ +..|..
T Consensus 111 Le~~y~G~s~kl~l~~----~~iC-s~C~GsGgksg~-~~~C~~C~GsGv~~~~~-------~~gPg~~qs~--q~~C~~ 175 (337)
T KOG0712|consen 111 LEELYMGKSKKLFLSR----NFIC-SKCSGSGGKSGS-APKCTTCRGSGVQTRTR-------QMGPGMVQSP--QLVCDS 175 (337)
T ss_pred HHHhhcCCccceeccc----CccC-CcCCCCCCCCCC-CCCCCCCCCCCceeEEE-------eccccccccc--eeEecc
Confidence 5666777666667777 7777 999999999776 45899999999999998 7778888877 889999
Q ss_pred CCCCcee-----eCCCCCCceeC
Q 040777 363 CEGLGYT-----ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~-----~C~~C~G~G~v 380 (380)
|+|.|.. .|+.|.|.+++
T Consensus 176 C~G~G~~~~~kd~C~~C~G~~~v 198 (337)
T KOG0712|consen 176 CNGSGETISLKDRCKTCSGAKVV 198 (337)
T ss_pred CCCccccccccccCcccccchhh
Confidence 9999998 99999999864
No 31
>PRK14288 chaperone protein DnaJ; Provisional
Probab=98.79 E-value=6.8e-09 Score=105.11 Aligned_cols=78 Identities=22% Similarity=0.487 Sum_probs=59.7
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.+.. ....|+.|+|.|.+.-.. |++++ +.+|+.
T Consensus 124 lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~-----------g~~~~---~~~C~~ 183 (369)
T PRK14288 124 FKEAVFGCKKTIKVQY----QSVC-ESCDGTGAKDK-ALETCKQCNGQGQVFMRQ-----------GFMSF---AQTCGA 183 (369)
T ss_pred HHHHhCCeEEEEEEEe----eccC-CCCCCcccCCC-CCcCCCCCCCCcEEEEEe-----------ceEEE---EEecCC
Confidence 5566666666666666 6677 99999999865 567899999999765443 44443 468999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|+.|+|.|++
T Consensus 184 C~G~G~~~~~~C~~C~G~g~v 204 (369)
T PRK14288 184 CQGKGKIIKTPCQACKGKTYI 204 (369)
T ss_pred CCCCceEccccCccCCCcceE
Confidence 9999998 99999999864
No 32
>PRK14291 chaperone protein DnaJ; Provisional
Probab=98.78 E-value=7e-09 Score=105.41 Aligned_cols=79 Identities=23% Similarity=0.434 Sum_probs=58.5
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
++++|+|....+..++ .++| ..|+|+|.+.+.....|+.|+|+|.+.-.. +++++ +++|+.
T Consensus 140 Lee~~~G~~~~i~~~r----~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----------g~~~~---~~~C~~ 200 (382)
T PRK14291 140 LEEAYTGTTVSLEVPR----YVPC-EACGGTGYDPGSGEKVCPTCGGSGEIYQRG-----------GFFRI---SQTCPT 200 (382)
T ss_pred HHHhhCCEEEEEEEee----eccC-CCCccccCCCCCCCccCCCCCCceEEEEec-----------ceEEE---EecCCC
Confidence 4455555555555544 5555 999999999888788899999999765542 23333 579999
Q ss_pred CCCCcee--eCCCCCCceeC
Q 040777 363 CEGLGYT--ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~--~C~~C~G~G~v 380 (380)
|+|+|.+ .|..|+|.|++
T Consensus 201 C~G~G~~~~~C~~C~G~g~v 220 (382)
T PRK14291 201 CGGEGVLREPCSKCNGRGLV 220 (382)
T ss_pred CCCceEEccCCCCCCCCceE
Confidence 9999977 99999999864
No 33
>PRK14295 chaperone protein DnaJ; Provisional
Probab=98.77 E-value=5.7e-09 Score=106.33 Aligned_cols=82 Identities=23% Similarity=0.362 Sum_probs=60.3
Q ss_pred eecccceeeeeccceeecc-cccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 284 VDLSERRVFLLGENRWEEP-SRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 284 ~~ls~~rv~~l~e~rwe~p-~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
+.|++..+|.+.+..+... ..+| ..|+|+|.+.+.....|+.|+|.|.+.-.. ++++. +.+|+.
T Consensus 146 l~lsLee~~~G~~k~i~~~r~~~C-~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----------g~~~~---~~~C~~ 210 (389)
T PRK14295 146 VTLSFTEAIDGATVPLRLTSQAPC-PACSGTGAKNGTTPRVCPTCSGTGQVSRNS-----------GGFSL---SEPCPD 210 (389)
T ss_pred EEEEHHHHhCCceEEEEeeccccC-CCCcccccCCCCCCcCCCCCCCEeEEEEEe-----------cceEE---EEecCC
Confidence 4445555555554444444 4555 999999999888788999999999876543 22232 468999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|+|++ .|..|+|+|++
T Consensus 211 C~G~G~~~~~~C~~C~G~g~~ 231 (389)
T PRK14295 211 CKGRGLIADDPCLVCKGSGRA 231 (389)
T ss_pred CcceeEEeccCCCCCCCCceE
Confidence 9999998 99999999864
No 34
>PRK10594 murein L,D-transpeptidase; Provisional
Probab=98.76 E-value=1.6e-08 Score=107.46 Aligned_cols=67 Identities=28% Similarity=0.413 Sum_probs=58.8
Q ss_pred cCCccCCCCChHhHHHHHHHHHHcCCCCCC--------------------------------------------CCCccc
Q 040777 160 KRKALRVGSEGEDVKAMQEELLKLGFFSGE--------------------------------------------EDMEYS 195 (380)
Q Consensus 160 ~~~~Lk~G~~g~~V~~LQ~~L~~lGy~~g~--------------------------------------------vDG~f~ 195 (380)
..+.|++|+.+++|..|.++|...|+.... .+..
T Consensus 231 ~~~~LrpG~~~~~V~~LR~RL~~~G~l~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 308 (608)
T PRK10594 231 GKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAA-- 308 (608)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHcCCcccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 356899999999999999999999987421 1123
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHh
Q 040777 196 SFSTGTERAVKTWQAAMGVTEDGIMTSELLESLY 229 (380)
Q Consensus 196 ~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~ 229 (380)
||..+.+|||+||+.|||.+||+||+.|+.+||
T Consensus 309 -YD~~Lv~AVK~FQ~rhGL~~DGvIG~~T~~~LN 341 (608)
T PRK10594 309 -YDNELVEAVKRFQAWQGLGADGVIGPRTRDWLN 341 (608)
T ss_pred -cCHHHHHHHHHHHHHcCCCCCcCcCHHHHHHHc
Confidence 599999999999999999999999999999998
No 35
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.73 E-value=1.2e-08 Score=103.02 Aligned_cols=84 Identities=24% Similarity=0.458 Sum_probs=58.9
Q ss_pred eecccceeeeeccceeecc-cccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcce-eeecCcccCC
Q 040777 284 VDLSERRVFLLGENRWEEP-SRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFI-EWVDEGMKCP 361 (380)
Q Consensus 284 ~~ls~~rv~~l~e~rwe~p-~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~-~~~~~~~~C~ 361 (380)
+.|++..+|.+.+...... .++| ..|+|+|.... ....|+.|+|.|.+.-.+ . +|++ +++ ..+|+
T Consensus 129 l~lsLee~~~G~~~~i~~~r~~~C-~~C~G~g~~~~-~~~~C~~C~G~G~~~~~~-------~--~g~~~~~~--~~~C~ 195 (365)
T PRK14290 129 LDISLEDAYYGTEKRIKYRRNAMC-PDCSGTGAKNG-KLITCPTCHGTGQQRIVR-------G--QGFFRMVT--VTTCR 195 (365)
T ss_pred EEecHHHhcCCEEEEEEeeecccC-CCCccccCCCC-CCccCCCCCCcCEEEEEe-------c--cCeEEEEE--EEeCC
Confidence 3444444444444443333 4555 99999998865 577899999999876665 1 3343 232 57899
Q ss_pred CCCCCcee---eCCCCCCceeC
Q 040777 362 YCEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 362 ~C~G~G~~---~C~~C~G~G~v 380 (380)
.|+|.|++ .|+.|+|+|++
T Consensus 196 ~C~G~G~~~~~~C~~C~G~g~v 217 (365)
T PRK14290 196 TCGGRGRIPEEKCPRCNGTGTV 217 (365)
T ss_pred CCCCceeEccCCCCCCCCceeE
Confidence 99999998 99999999874
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.69 E-value=1.8e-08 Score=101.92 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=62.2
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCC-cccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKA-TTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCP 361 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~-~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~ 361 (380)
++++++|....+..++ ...| ..|+|+|...... ...|..|+|.|.+.-.. ...+|++++ ..+|+
T Consensus 123 Lee~~~G~~~~v~~~r----~~~C-~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~-------~~~~g~~~~---~~~C~ 187 (371)
T PRK14292 123 LEQARAGEEVEVEVDR----LTEC-EHCHGSRTEPGGKPPKTCPTCRGAGAVRAQA-------RTIFGVVET---QQPCP 187 (371)
T ss_pred HHHHcCCeEEEEEEEe----eecC-CCCcccccCCCCCCCccCCCCCCccEEEEEE-------eccCceEEE---eeecC
Confidence 4455555555555555 4555 9999999876543 67899999999887666 445566654 56999
Q ss_pred CCCCCcee---eCCCCCCceeC
Q 040777 362 YCEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 362 ~C~G~G~~---~C~~C~G~G~v 380 (380)
.|+|.|.. .|+.|+|+|++
T Consensus 188 ~C~G~G~~~~~~C~~C~G~g~v 209 (371)
T PRK14292 188 TCRGEGQIITDPCTVCRGRGRT 209 (371)
T ss_pred CCcccceecCCCCCCCCCceEE
Confidence 99999999 99999999864
No 37
>COG2989 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.52 E-value=1.9e-07 Score=97.38 Aligned_cols=73 Identities=23% Similarity=0.298 Sum_probs=63.0
Q ss_pred cccCCccCCCCChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhh
Q 040777 158 KKKRKALRVGSEGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYM 230 (380)
Q Consensus 158 ~~~~~~Lk~G~~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~ 230 (380)
......|++|.++++|..|.++|...|-+.....+.-+.||+.+..|||+||+.|||++||+||+.|+.+|+.
T Consensus 226 ~~~~~~LrpG~~~~~v~aL~~~L~~~~~d~~~a~~~s~~yd~el~~avKrfQ~~~GL~~DGviG~~T~~aLn~ 298 (561)
T COG2989 226 IPAGALLRPGVTSPDVPALRARLARSGMDLPSAAGSSPAYDPELVEAVKRFQARHGLPADGVIGPATRAALNV 298 (561)
T ss_pred cCCccccCCCCCchhHHHHHHHHHhcCccchhhccCcccccHHHHHHHHHHHHHhCCCCCCcccHHHHHHhcc
Confidence 3456789999999999999999999996443444443467999999999999999999999999999999994
No 38
>COG3409 Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=1.3e-06 Score=78.24 Aligned_cols=64 Identities=36% Similarity=0.474 Sum_probs=58.9
Q ss_pred ccCCCCChHhHHHHHHHHHHcCCCCCC-CCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHh
Q 040777 163 ALRVGSEGEDVKAMQEELLKLGFFSGE-EDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLY 229 (380)
Q Consensus 163 ~Lk~G~~g~~V~~LQ~~L~~lGy~~g~-vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~ 229 (380)
....+..+..+..+|..+..++|+.+. +||+| |..|+.+|+.||+.++|.+||++++.||..|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~f---g~~t~~~v~~~q~~~~l~~dgi~g~~t~~~l~ 184 (185)
T COG3409 120 QPGLGLGGGDVATLQQPLPLLGYRSGIRVDGIF---GPQTEAAVKAFQRQYGLTVDGIVGPQTWAALR 184 (185)
T ss_pred ccCccccccchHHHHHHHHhcccccCCCCCCcc---cHHHHHHHHHHHHHhCCCCCeeecHHHHHHhh
Confidence 345578889999999999999999876 99998 99999999999999999999999999999985
No 39
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=98.11 E-value=7.3e-06 Score=65.24 Aligned_cols=58 Identities=29% Similarity=0.585 Sum_probs=52.0
Q ss_pred CChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCC----CCCCccCHHHHHHH
Q 040777 168 SEGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGV----TEDGIMTSELLESL 228 (380)
Q Consensus 168 ~~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL----~~DGivg~~T~~~L 228 (380)
..++.+.+||..|.++|||.+.++|.| |..|++|+++|+-..++ ..+|.||+..++-|
T Consensus 13 l~~~~~~evq~~L~~lGyy~g~~~g~~---d~a~~~Al~~~~g~ENfE~R~~~~~~ID~~VL~~L 74 (74)
T PF08823_consen 13 LDGDVAREVQEALKRLGYYKGEADGVW---DEATEDALRAWAGTENFEERIRGDGKIDPVVLAYL 74 (74)
T ss_pred CcHHHHHHHHHHHHHcCCccCCCCCcc---cHHHHHHHHHHHHHhhHHhhcCCCCccCHHHHhhC
Confidence 467889999999999999999999999 99999999999988865 78888999888654
No 40
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=98.02 E-value=3.4e-06 Score=88.69 Aligned_cols=59 Identities=32% Similarity=0.870 Sum_probs=38.1
Q ss_pred ccCCCCCCcceE-----eeeeccCccccc-ccC-c-------cee-eecCcccCCCCCCCcee----eCCCCCCceeC
Q 040777 322 TQCLTCRGEGRL-----MCLECDGTGEPN-IEP-Q-------FIE-WVDEGMKCPYCEGLGYT----ICDVCEGKAVV 380 (380)
Q Consensus 322 ~~C~~C~G~G~~-----~C~~C~GsG~~~-~~p-g-------~~~-~~~~~~~C~~C~G~G~~----~C~~C~G~G~v 380 (380)
..|+.|+|+|++ .|..|+|+|... +.+ + -+. -.....+|+.|.|+|.+ .|+.|.|+|.+
T Consensus 3 ~~C~~C~g~G~i~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v~~~c~~c~G~gkv 80 (715)
T COG1107 3 KKCPECGGKGKIVVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTVYDTCPECGGTGKV 80 (715)
T ss_pred ccccccCCCceEeeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEEEeecccCCCceeE
Confidence 468888888763 588888888761 111 0 000 11114588888888888 88888888763
No 41
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4e-06 Score=82.68 Aligned_cols=20 Identities=35% Similarity=0.986 Sum_probs=12.2
Q ss_pred cCCCCCCCceeeCCCCCCce
Q 040777 359 KCPYCEGLGYTICDVCEGKA 378 (380)
Q Consensus 359 ~C~~C~G~G~~~C~~C~G~G 378 (380)
.|++|+|+|+++|.+|.|.|
T Consensus 247 ~C~tC~grG~k~C~TC~gtg 266 (406)
T KOG2813|consen 247 ECHTCKGRGKKPCTTCSGTG 266 (406)
T ss_pred cCCcccCCCCcccccccCcc
Confidence 46666666666666666655
No 42
>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=1.1e-05 Score=79.63 Aligned_cols=25 Identities=28% Similarity=0.696 Sum_probs=21.9
Q ss_pred CcccCCCCCCCceeeCCCCCCceeC
Q 040777 356 EGMKCPYCEGLGYTICDVCEGKAVV 380 (380)
Q Consensus 356 ~~~~C~~C~G~G~~~C~~C~G~G~v 380 (380)
....|..|+|+|...|..|+|+|.+
T Consensus 233 t~~~C~~C~G~G~~~C~tC~grG~k 257 (406)
T KOG2813|consen 233 THDLCYMCHGRGIKECHTCKGRGKK 257 (406)
T ss_pred ccchhhhccCCCcccCCcccCCCCc
Confidence 3668999999999999999999863
No 43
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=97.78 E-value=1.1e-05 Score=84.98 Aligned_cols=58 Identities=29% Similarity=0.713 Sum_probs=47.4
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCcce------------------------EeeeeccCcccccccCcceeeecCcccCCC
Q 040777 307 GRGNQDAGSKAKKATTQCLTCRGEGR------------------------LMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 307 ~~~c~G~G~~~~~~~~~C~~C~G~G~------------------------~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
|..|+|.|-. -.....|+.|+|+|. +.|..|+|+|.+.. ..+|+.
T Consensus 5 C~~C~g~G~i-~v~~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~v----------~~~c~~ 73 (715)
T COG1107 5 CPECGGKGKI-VVGEEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVTV----------YDTCPE 73 (715)
T ss_pred ccccCCCceE-eeeeeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEEE----------Eeeccc
Confidence 4899997765 455678999999995 25999999999855 457999
Q ss_pred CCCCcee-eCCCCC
Q 040777 363 CEGLGYT-ICDVCE 375 (380)
Q Consensus 363 C~G~G~~-~C~~C~ 375 (380)
|+|+|++ .|..|.
T Consensus 74 c~G~gkv~~c~~cG 87 (715)
T COG1107 74 CGGTGKVLTCDICG 87 (715)
T ss_pred CCCceeEEeecccc
Confidence 9999999 888884
No 44
>PLN03165 chaperone protein dnaJ-related; Provisional
Probab=97.72 E-value=3.4e-05 Score=65.96 Aligned_cols=47 Identities=30% Similarity=0.776 Sum_probs=38.7
Q ss_pred ccccccCCCCCCCCCCCCCcccCCCCCCcceE------------eeeeccCcccccccCcceeeecCcccCCCCCCCcee
Q 040777 302 PSRLAGRGNQDAGSKAKKATTQCLTCRGEGRL------------MCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT 369 (380)
Q Consensus 302 p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~------------~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~ 369 (380)
...+| ..|+|+|.+ .|+.|+|.|.+ .|..|+|+|+. .|..|.|+|.+
T Consensus 40 ~~v~C-~~C~GsG~~------~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~--------------~C~~C~G~G~~ 98 (111)
T PLN03165 40 NTQPC-FPCSGTGAQ------VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL--------------TCTTCQGSGIQ 98 (111)
T ss_pred cCCCC-CCCCCCCCc------CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee--------------eCCCCCCCEEE
Confidence 45667 999999973 79999999863 58889999863 49999999986
No 45
>COG3023 ampD N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.00046 Score=66.56 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCC-CCCCccCHHHHHHHh
Q 040777 171 EDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGV-TEDGIMTSELLESLY 229 (380)
Q Consensus 171 ~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL-~~DGivg~~T~~~L~ 229 (380)
.+|..||..|+..||... + |.| |..|+.+|++||..++- ..||+.|.+|...|.
T Consensus 198 ~~v~~lq~~L~~YGY~v~-~-~~~---d~~t~~vv~aFQ~hfrp~~~dg~~d~et~a~l~ 252 (257)
T COG3023 198 EDVAALQEMLARYGYGVE-I-GVF---DQETQQVVRAFQMHFRPGLYDGEADVETIAILQ 252 (257)
T ss_pred CCHHHHHHHHHHhCcCCC-c-chh---hHHHHHHHHHHHHHhCCCCCCCCCChHHHHHHH
Confidence 899999999999999984 4 888 99999999999999985 589999999998875
No 46
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00026 Score=71.95 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=26.0
Q ss_pred CCCCChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCC
Q 040777 165 RVGSEGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTE 216 (380)
Q Consensus 165 k~G~~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~ 216 (380)
..+.+.++|+..-+.|+.. |-+..-.| ++.-+.-.+.-+.+|.+-.
T Consensus 13 ~k~As~~EIKkAYRkLA~k-yHPD~n~g-----~~~AeeKFKEI~eAYEVLs 58 (371)
T COG0484 13 SKDASEEEIKKAYRKLAKK-YHPDRNPG-----DKEAEEKFKEINEAYEVLS 58 (371)
T ss_pred CCCCCHHHHHHHHHHHHHH-hCCCCCCC-----CHHHHHHHHHHHHHHHHhC
Confidence 4456666777776777654 32222222 4466666677777776433
No 47
>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation. DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.
Probab=97.10 E-value=0.00036 Score=53.98 Aligned_cols=11 Identities=27% Similarity=0.842 Sum_probs=8.9
Q ss_pred eCCCCCCceeC
Q 040777 370 ICDVCEGKAVV 380 (380)
Q Consensus 370 ~C~~C~G~G~v 380 (380)
.|+.|+|+|.+
T Consensus 43 ~C~~C~G~G~~ 53 (66)
T PF00684_consen 43 TCPKCGGTGKI 53 (66)
T ss_dssp E-TTTSSSSEE
T ss_pred ECCCCcceeeE
Confidence 99999999974
No 48
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0011 Score=64.72 Aligned_cols=50 Identities=30% Similarity=0.632 Sum_probs=40.1
Q ss_pred cCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCceeeCCCCC
Q 040777 323 QCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYTICDVCE 375 (380)
Q Consensus 323 ~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~~C~~C~ 375 (380)
.|..|.|.+++.|..|+|+-++.... .......+|..|+-.|.++|+.|.
T Consensus 231 ~C~~CGg~rFlpC~~C~GS~kv~~~~---~~~~~~~rC~~CNENGLvrCp~Cs 280 (281)
T KOG2824|consen 231 VCESCGGARFLPCSNCHGSCKVHEEE---EDDGGVLRCLECNENGLVRCPVCS 280 (281)
T ss_pred cCCCcCCcceEecCCCCCceeeeeec---cCCCcEEECcccCCCCceeCCccC
Confidence 59999999999999999999885521 111113579999999999999995
No 49
>PRK14279 chaperone protein DnaJ; Provisional
Probab=96.62 E-value=0.0012 Score=67.83 Aligned_cols=65 Identities=26% Similarity=0.445 Sum_probs=40.0
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceE------eeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRL------MCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~------~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. -.+ .....|+.|+|+|.. .|..|+|+|.+ ...
T Consensus 152 ~l~ltLee~~~G~~~~----v~~-------------~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~-------~~~-- 205 (392)
T PRK14279 152 ETTLDFVEAAKGVTMP----LRL-------------TSPAPCTTCHGSGARPGTSPKVCPTCNGSGVI-------SRN-- 205 (392)
T ss_pred EEEEEHHHHhCCeEEE----Eee-------------eccccCCCCccccccCCCCCCCCCCCcceEEE-------EEE--
Confidence 5778888888887766 222 225679999998863 35555555533 000
Q ss_pred cccCCCCCCCc--eeeCCCCCCceeC
Q 040777 357 GMKCPYCEGLG--YTICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G--~~~C~~C~G~G~v 380 (380)
. |.. ...|..|+|+|.+
T Consensus 206 ~-------g~~~~~~~C~~C~G~G~~ 224 (392)
T PRK14279 206 Q-------GAFGFSEPCTDCRGTGSI 224 (392)
T ss_pred e-------cceEEEEecCCCCceeEE
Confidence 0 111 1289999999964
No 50
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=96.51 E-value=0.0013 Score=66.41 Aligned_cols=67 Identities=24% Similarity=0.596 Sum_probs=42.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.++|++..+|.+...+ ..+- ....|..|+|.|. ..|..|+|+|.+... ..+
T Consensus 122 ~l~vsLee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~-- 178 (354)
T TIGR02349 122 DLELTFEEAVFGVEKE----IEIP-------------RKESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQ----QGT-- 178 (354)
T ss_pred EEEEEHHHHhCCeeEE----EEee-------------cCCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEE----Eec--
Confidence 5788899999887766 2222 2467999999985 346666666655221 010
Q ss_pred cccCCCCCCCce----eeCCCCCCceeC
Q 040777 357 GMKCPYCEGLGY----TICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~----~~C~~C~G~G~v 380 (380)
|-|. ..|..|+|+|++
T Consensus 179 --------~~g~~~~~~~C~~C~G~G~~ 198 (354)
T TIGR02349 179 --------PFGFFQQQQTCPTCGGEGKI 198 (354)
T ss_pred --------cCCceEEEEecCCCCCccee
Confidence 1222 289999999863
No 51
>PRK14301 chaperone protein DnaJ; Provisional
Probab=96.36 E-value=0.002 Score=65.63 Aligned_cols=65 Identities=28% Similarity=0.543 Sum_probs=40.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. -.+. ....|..|+|+|. ..|..|+|+|.+. ..
T Consensus 123 ~l~vtLee~~~G~~k~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~------~~--- 176 (373)
T PRK14301 123 NLTVSFRQAAKGDEVT----LRIP-------------KNVTCDDCGGSGAAPGTSPETCRHCGGSGQVR------QS--- 176 (373)
T ss_pred EEeccHHHHhCCceEE----EEee-------------ecccCCCCCCcccCCCCCCcccCCccCeeEEE------EE---
Confidence 4678888888887665 2222 2457999999986 3456666655430 00
Q ss_pred cccCCCCCCCce--eeCCCCCCceeC
Q 040777 357 GMKCPYCEGLGY--TICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~--~~C~~C~G~G~v 380 (380)
. |... ..|..|+|.|.+
T Consensus 177 --~-----G~~~~~~~C~~C~G~G~~ 195 (373)
T PRK14301 177 --Q-----GFFQIAVPCPVCRGEGRV 195 (373)
T ss_pred --e-----eeEEEEEeCCCCCceeee
Confidence 0 2111 299999999963
No 52
>PRK14286 chaperone protein DnaJ; Provisional
Probab=96.28 E-value=0.0024 Score=65.04 Aligned_cols=65 Identities=26% Similarity=0.590 Sum_probs=40.3
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+++++..+|.+.+.. -.+- ....|..|+|+|. ..|..|+|+|.+ ..
T Consensus 129 ~l~vtLee~~~G~~k~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v-------~~--- 181 (372)
T PRK14286 129 NLEVSLEDAALGREYK----IEIP-------------RLESCVDCNGSGASKGSSPTTCPDCGGSGQI-------RR--- 181 (372)
T ss_pred EEEEEHHHHhCCeeEE----EEee-------------ccccCCCCcCCCcCCCCCCccCCCCcCeEEE-------EE---
Confidence 5778888888887766 2222 2457999999886 345555555533 00
Q ss_pred cccCCCCCCCcee--eCCCCCCceeC
Q 040777 357 GMKCPYCEGLGYT--ICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~~--~C~~C~G~G~v 380 (380)
.. |...+ .|..|+|.|.+
T Consensus 182 --~~----G~~~~~~~C~~C~G~G~~ 201 (372)
T PRK14286 182 --TQ----GFFSVATTCPTCRGKGTV 201 (372)
T ss_pred --Ee----ceEEEEEeCCCCCceeeE
Confidence 00 11111 89999999964
No 53
>PRK14300 chaperone protein DnaJ; Provisional
Probab=96.28 E-value=0.0022 Score=65.22 Aligned_cols=63 Identities=24% Similarity=0.582 Sum_probs=38.1
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.+++..+|.+.... ..+ .....|..|+|+|. ..|..|+|+|.+. ..
T Consensus 124 ~l~~sLee~~~G~~k~----i~~-------------~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~------~~--- 177 (372)
T PRK14300 124 NLTINLEEAFHGIEKN----ISF-------------SSEVKCDTCHGSGSEKGETVTTCDACSGVGATR------MQ--- 177 (372)
T ss_pred EEEEEHHHHhCCceEE----EEe-------------eeccccCCCCCcccCCCCCCccCCCccCeEEEE------Ee---
Confidence 4667777777766555 222 22467899988885 3455555555430 00
Q ss_pred cccCCCCCCCcee----eCCCCCCceeC
Q 040777 357 GMKCPYCEGLGYT----ICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~~----~C~~C~G~G~v 380 (380)
.|.+ .|..|+|.|++
T Consensus 178 ---------~g~~~~~~~C~~C~G~G~~ 196 (372)
T PRK14300 178 ---------QGFFTIEQACHKCQGNGQI 196 (372)
T ss_pred ---------eceEEEEEeCCCCCccceE
Confidence 1222 89999999964
No 54
>PRK14284 chaperone protein DnaJ; Provisional
Probab=96.22 E-value=0.0025 Score=65.26 Aligned_cols=65 Identities=25% Similarity=0.466 Sum_probs=40.0
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.+++..+|.+.+.+ -.+ .....|..|+|+|. ..|..|+|+|.+. ..
T Consensus 137 ~l~vslee~~~G~~~~----i~~-------------~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~-------~~-- 190 (391)
T PRK14284 137 HITLSFEEAAKGVEKE----LLV-------------SGYKSCDACSGSGANSSQGIKVCDRCKGSGQVV-------QS-- 190 (391)
T ss_pred EEEEEHHHHhCCeeEE----EEE-------------eeeccCCCCcccccCCCCCCeecCccCCeeEEE-------EE--
Confidence 5778888888887766 222 22467999998885 3455555555330 10
Q ss_pred cccCCCCCCCce--eeCCCCCCceeC
Q 040777 357 GMKCPYCEGLGY--TICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~--~~C~~C~G~G~v 380 (380)
. |.-. ..|+.|+|.|.+
T Consensus 191 --~-----G~~~~~~~C~~C~G~G~~ 209 (391)
T PRK14284 191 --R-----GFFSMASTCPECGGEGRV 209 (391)
T ss_pred --e-----ceEEEEEECCCCCCCCcc
Confidence 0 1111 299999999964
No 55
>PRK14282 chaperone protein DnaJ; Provisional
Probab=96.22 E-value=0.0029 Score=64.28 Aligned_cols=67 Identities=24% Similarity=0.498 Sum_probs=42.3
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. -.+ .....|..|+|+|. ..|..|+|+|.+... +++
T Consensus 131 ~l~~slee~~~G~~~~----i~~-------------~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~-- 187 (369)
T PRK14282 131 EIEVTLSDLINGAEIP----VEY-------------DRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREE----RRS-- 187 (369)
T ss_pred EEEEEHHHhcCCeEEE----EEe-------------eecccCCCCCccCCCCCCCCcCCCCCCCcCEEEEE----EEc--
Confidence 5678888888887666 222 22457999999885 356666666655221 111
Q ss_pred cccCCCCCCCcee----eCCCCCCceeC
Q 040777 357 GMKCPYCEGLGYT----ICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~~----~C~~C~G~G~v 380 (380)
+.|.+ .|..|+|.|.+
T Consensus 188 --------~~G~~~~~~~C~~C~G~G~~ 207 (369)
T PRK14282 188 --------FFGVFVSERTCERCGGTGKI 207 (369)
T ss_pred --------cCcceEEEEECCCCCCccee
Confidence 11222 89999999963
No 56
>PRK14276 chaperone protein DnaJ; Provisional
Probab=96.16 E-value=0.0031 Score=64.42 Aligned_cols=67 Identities=28% Similarity=0.619 Sum_probs=43.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.+++..+|.+.... -.+ .....|..|+|+|. ..|..|+|+|.+... ++
T Consensus 125 ~l~vtLee~~~G~~~~----i~~-------------~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~--- 180 (380)
T PRK14276 125 RVNLDFEEAIFGKEKE----VSY-------------NREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVD----TQ--- 180 (380)
T ss_pred EEEEEHHHhcCCeEEE----EEe-------------eccccCCCCcCcccCCCCCCccCCCCCCeeEEEEE----Ee---
Confidence 4678888888887665 222 22567999999985 457777777766321 11
Q ss_pred cccCCCCCCCce----eeCCCCCCceeC
Q 040777 357 GMKCPYCEGLGY----TICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~----~~C~~C~G~G~v 380 (380)
.+.|. ..|+.|+|.|.+
T Consensus 181 -------~~~G~~~~~~~C~~C~G~G~~ 201 (380)
T PRK14276 181 -------TPLGMMRRQVTCDVCHGTGKE 201 (380)
T ss_pred -------cCCceEEEEEECCCCCCCCcc
Confidence 12222 289999999964
No 57
>PRK14287 chaperone protein DnaJ; Provisional
Probab=96.15 E-value=0.003 Score=64.36 Aligned_cols=67 Identities=27% Similarity=0.617 Sum_probs=41.9
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.++|++..+|.+.... -.+. ....|..|+|+|. ..|..|+|+|.+... +++
T Consensus 117 ~l~vslee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~-- 173 (371)
T PRK14287 117 TMTLEFKEAVFGKETE----IEIP-------------REETCGTCHGSGAKPGTKPETCSHCGGSGQLNVE----QNT-- 173 (371)
T ss_pred EEEEEHHHhcCCeEEE----EEEe-------------eeccCCCCCCcccCCCCCCcccCCCCCEEEEEEE----Eec--
Confidence 4677888888876655 2222 2457999999885 456666666655221 111
Q ss_pred cccCCCCCCCc----eeeCCCCCCceeC
Q 040777 357 GMKCPYCEGLG----YTICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G----~~~C~~C~G~G~v 380 (380)
+-| ...|+.|+|+|.+
T Consensus 174 --------~~G~~~~~~~C~~C~G~G~~ 193 (371)
T PRK14287 174 --------PFGRVVNRRVCHHCEGTGKI 193 (371)
T ss_pred --------CCceEEEEEeCCCCCCCCcc
Confidence 112 2289999999964
No 58
>PRK14296 chaperone protein DnaJ; Provisional
Probab=96.15 E-value=0.003 Score=64.38 Aligned_cols=67 Identities=27% Similarity=0.576 Sum_probs=44.3
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. -.+ .....|..|+|+|. ..|..|+|+|.+... ++
T Consensus 128 ~l~ltlee~~~G~~~~----i~~-------------~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~--- 183 (372)
T PRK14296 128 DIYLTFKELLFGVDKI----IEL-------------DLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQ----KN--- 183 (372)
T ss_pred EeeccHHHhhCCeeEE----EEE-------------eeeeccCCCCCCccCCCCCCccCCCCCCCceEEEE----Ee---
Confidence 5678888888887766 222 22457999999985 457777777766321 11
Q ss_pred cccCCCCCCCc----eeeCCCCCCceeC
Q 040777 357 GMKCPYCEGLG----YTICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G----~~~C~~C~G~G~v 380 (380)
.|.+ ...|..|+|.|.+
T Consensus 184 -------~g~~~~q~~~~C~~C~G~G~~ 204 (372)
T PRK14296 184 -------MGFFQFQQSAKCNVCNGAGKI 204 (372)
T ss_pred -------ccceEEEEEecCCCcCCccee
Confidence 1222 2389999999964
No 59
>PRK10767 chaperone protein DnaJ; Provisional
Probab=96.14 E-value=0.0033 Score=63.90 Aligned_cols=22 Identities=36% Similarity=1.102 Sum_probs=15.5
Q ss_pred cCCCCCCCcee-----------eCCCCCCceeC
Q 040777 359 KCPYCEGLGYT-----------ICDVCEGKAVV 380 (380)
Q Consensus 359 ~C~~C~G~G~~-----------~C~~C~G~G~v 380 (380)
.|+.|+|+|.+ .|..|+|.|.+
T Consensus 161 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 193 (371)
T PRK10767 161 TCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKI 193 (371)
T ss_pred cCCCCCCeeEEEEeeceEEEEEeCCCCCCceeE
Confidence 46666666543 69999999863
No 60
>PRK14278 chaperone protein DnaJ; Provisional
Probab=96.11 E-value=0.0032 Score=64.29 Aligned_cols=69 Identities=22% Similarity=0.390 Sum_probs=45.6
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. -.+ .....|..|+|+|. ..|..|+|+|.+...
T Consensus 118 ~l~vtLee~~~G~~~~----i~~-------------~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--------- 171 (378)
T PRK14278 118 RMRLDLEECATGVTKQ----VTV-------------DTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTV--------- 171 (378)
T ss_pred EEEEEHHHhcCCeEEE----EEE-------------EeeccCCCCcCccCCCCCCceecCCccCceEEEEE---------
Confidence 5788888999887766 222 22467999999995 468888888866321
Q ss_pred cccCCCCCCCc--eeeCCCCCCceeC
Q 040777 357 GMKCPYCEGLG--YTICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G--~~~C~~C~G~G~v 380 (380)
.....|.- ...|..|+|.|.+
T Consensus 172 ---~~~~~g~~~~~~~C~~C~G~G~~ 194 (378)
T PRK14278 172 ---QRSFLGQVMTSRPCPTCRGVGEV 194 (378)
T ss_pred ---EeccceeEEEEEECCCCCcccee
Confidence 01111211 2299999999964
No 61
>PRK14297 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0033 Score=64.16 Aligned_cols=67 Identities=28% Similarity=0.578 Sum_probs=43.5
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. ..+. ....|..|+|.|. ..|..|+|+|.+... +++
T Consensus 127 ~l~vsLee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~-- 183 (380)
T PRK14297 127 TINLTFEEAVFGVEKE----ISVT-------------RNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQ----RNT-- 183 (380)
T ss_pred EEEEEHHHhcCCeEEE----EEee-------------eeccCCCcccccccCCCcCccCCCccCeEEEEEE----EEc--
Confidence 5778888888887766 2222 2457999999986 357777777755321 110
Q ss_pred cccCCCCCCCcee----eCCCCCCceeC
Q 040777 357 GMKCPYCEGLGYT----ICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~~----~C~~C~G~G~v 380 (380)
+.|.+ .|..|+|+|.+
T Consensus 184 --------~~G~~~~~~~C~~C~G~G~~ 203 (380)
T PRK14297 184 --------PLGSFVSTTTCDKCGGSGKV 203 (380)
T ss_pred --------CCceeEEEEeCCCCCCCceE
Confidence 22332 89999999963
No 62
>PRK14285 chaperone protein DnaJ; Provisional
Probab=96.08 E-value=0.0035 Score=63.70 Aligned_cols=62 Identities=21% Similarity=0.473 Sum_probs=40.2
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
.+.|++..+|.+.+.. -.+. ....|..|+|+|...... ...|+.
T Consensus 125 ~l~vtlee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~-------------------~~~C~~ 168 (365)
T PRK14285 125 QIEISLEDAYLGYKNN----INIT-------------RNMLCESCLGKKSEKGTS-------------------PSICNM 168 (365)
T ss_pred EEEEEHHHhhCCeEEE----EEee-------------ecccCCCCCCcccCCCCC-------------------CccCCC
Confidence 4677888888776655 2222 245688888888532111 235777
Q ss_pred CCCCcee-----------eCCCCCCceeC
Q 040777 363 CEGLGYT-----------ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~-----------~C~~C~G~G~v 380 (380)
|+|+|.+ .|+.|+|.|.+
T Consensus 169 C~G~G~~~~~~G~~~~~~~C~~C~G~G~~ 197 (365)
T PRK14285 169 CNGSGRVMQGGGFFRVTTTCPKCYGNGKI 197 (365)
T ss_pred ccCceeEEecCceeEEeeecCCCCCcccc
Confidence 7776643 89999999964
No 63
>PRK14298 chaperone protein DnaJ; Provisional
Probab=96.07 E-value=0.004 Score=63.62 Aligned_cols=67 Identities=24% Similarity=0.521 Sum_probs=43.6
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. -.+- ....|..|+|+|. ..|..|+|+|.+... +
T Consensus 120 ~l~vslee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~-----~--- 174 (377)
T PRK14298 120 DLYITLEEAAFGVRKD----IDVP-------------RAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTT-----R--- 174 (377)
T ss_pred EEEEEHHHhhCCeEEE----EEEE-------------eeccCCCCCCCcccCCCCCCcCCCCCCccEEEEE-----E---
Confidence 5778888888887766 2222 2457999999886 457777777765321 0
Q ss_pred cccCCCCCCCcee----eCCCCCCceeC
Q 040777 357 GMKCPYCEGLGYT----ICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~~----~C~~C~G~G~v 380 (380)
.- +-|.+ .|+.|+|.|.+
T Consensus 175 --~~----~~g~~~~~~~C~~C~G~G~~ 196 (377)
T PRK14298 175 --ST----PLGQFVTTTTCSTCHGRGQV 196 (377)
T ss_pred --ec----CceeEEEEEeCCCCCCCCcc
Confidence 10 22222 89999999964
No 64
>PRK14295 chaperone protein DnaJ; Provisional
Probab=96.04 E-value=0.0036 Score=64.19 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=9.5
Q ss_pred eCCCCCCceeC
Q 040777 370 ICDVCEGKAVV 380 (380)
Q Consensus 370 ~C~~C~G~G~v 380 (380)
.|+.|+|+|.+
T Consensus 207 ~C~~C~G~G~~ 217 (389)
T PRK14295 207 PCPDCKGRGLI 217 (389)
T ss_pred ecCCCcceeEE
Confidence 89999999863
No 65
>PRK14294 chaperone protein DnaJ; Provisional
Probab=96.00 E-value=0.004 Score=63.24 Aligned_cols=65 Identities=26% Similarity=0.517 Sum_probs=40.0
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceE------eeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRL------MCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~------~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.+.. -.+- ....|..|+|.|.. .|..|+|+|.+. ...
T Consensus 123 ~l~lslee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~------~~~-- 177 (366)
T PRK14294 123 DLTLPFLEAAFGTEKE----IRIQ-------------KLETCEECHGSGCEPGTSPTTCPQCGGSGQVT------QSQ-- 177 (366)
T ss_pred EEEeeHHHhcCCeEEE----EEee-------------ecccCCCCCCccccCCCCcccCCCcCCeEEEE------EEe--
Confidence 4778888888887766 2222 24579999998863 455555555330 000
Q ss_pred cccCCCCCCCc--eeeCCCCCCceeC
Q 040777 357 GMKCPYCEGLG--YTICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G--~~~C~~C~G~G~v 380 (380)
|.- ...|+.|+|.|.+
T Consensus 178 --------G~~~~~~~C~~C~G~G~~ 195 (366)
T PRK14294 178 --------GFFSIRTTCPRCRGMGKV 195 (366)
T ss_pred --------eeEEEEeeCCCCCCcCee
Confidence 111 1289999999963
No 66
>PRK14280 chaperone protein DnaJ; Provisional
Probab=95.98 E-value=0.0038 Score=63.68 Aligned_cols=67 Identities=24% Similarity=0.545 Sum_probs=43.7
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.|++..+|.+.... -.+- ....|..|+|+|. ..|..|+|+|.+... +++
T Consensus 122 ~l~vtLee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~-- 178 (376)
T PRK14280 122 TMTLTFEEAVFGKEKE----IEIP-------------KEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVE----QNT-- 178 (376)
T ss_pred EEEEEHHHHhCCceeE----EEEe-------------eeccCCCCCCcccCCCCCCccCCCCCCEEEEEEE----eec--
Confidence 5778888888887665 2222 2457999999985 467777777765321 111
Q ss_pred cccCCCCCCCce----eeCCCCCCceeC
Q 040777 357 GMKCPYCEGLGY----TICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~----~~C~~C~G~G~v 380 (380)
+.|. ..|+.|+|+|++
T Consensus 179 --------~~g~~~~~~~C~~C~G~G~~ 198 (376)
T PRK14280 179 --------PFGRVVNRQTCPHCNGTGQE 198 (376)
T ss_pred --------CCceEEEEEEcCCCCCCCce
Confidence 1222 289999999963
No 67
>PRK14291 chaperone protein DnaJ; Provisional
Probab=95.95 E-value=0.0043 Score=63.41 Aligned_cols=61 Identities=25% Similarity=0.475 Sum_probs=39.0
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
.++|++..+|.+.... ..+. ....|..|+|+|...... ...|+.
T Consensus 135 ~l~vsLee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~~~-------------------~~~C~~ 178 (382)
T PRK14291 135 TVEISLEEAYTGTTVS----LEVP-------------RYVPCEACGGTGYDPGSG-------------------EKVCPT 178 (382)
T ss_pred EEEEEHHHhhCCEEEE----EEEe-------------eeccCCCCccccCCCCCC-------------------CccCCC
Confidence 5778888888887665 2222 245789998888532111 123555
Q ss_pred CCCCcee-----------eCCCCCCcee
Q 040777 363 CEGLGYT-----------ICDVCEGKAV 379 (380)
Q Consensus 363 C~G~G~~-----------~C~~C~G~G~ 379 (380)
|+|+|.+ .|..|+|.|+
T Consensus 179 C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 206 (382)
T PRK14291 179 CGGSGEIYQRGGFFRISQTCPTCGGEGV 206 (382)
T ss_pred CCCceEEEEecceEEEEecCCCCCCceE
Confidence 5555533 8999999995
No 68
>PRK14277 chaperone protein DnaJ; Provisional
Probab=95.94 E-value=0.0043 Score=63.49 Aligned_cols=67 Identities=24% Similarity=0.581 Sum_probs=42.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.++|++..+|.+.+.. -.+- ....|..|+|.|. ..|..|+|+|.+... +++
T Consensus 134 ~l~vtLee~~~G~~~~----v~~~-------------r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~-- 190 (386)
T PRK14277 134 DLELTFEEAAFGTEKE----IEVE-------------RFEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTR----QNT-- 190 (386)
T ss_pred EEEEEHHHHhCCeEEE----EEEE-------------eeccCCCCCCCCcCCCCCCccCCCCCCEEEEEEE----Eec--
Confidence 5678888888887766 2222 2457999999885 456667666655221 111
Q ss_pred cccCCCCCCCce----eeCCCCCCceeC
Q 040777 357 GMKCPYCEGLGY----TICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~----~~C~~C~G~G~v 380 (380)
+.|. ..|..|+|.|.+
T Consensus 191 --------~~G~~~~~~~C~~C~G~G~~ 210 (386)
T PRK14277 191 --------PFGRIVNIRTCDRCHGEGKI 210 (386)
T ss_pred --------cCceEEEEEECCCCCcceee
Confidence 1122 289999999963
No 69
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=95.86 E-value=0.0072 Score=54.14 Aligned_cols=48 Identities=27% Similarity=0.594 Sum_probs=36.0
Q ss_pred ccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCceeeC
Q 040777 322 TQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYTIC 371 (380)
Q Consensus 322 ~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~~C 371 (380)
..|..|.|.+++.|..|+|+-++.....+.. ....+|+.|+-.|.++|
T Consensus 100 ~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~--~~~~rC~~Cnengl~~c 147 (147)
T cd03031 100 GVCEGCGGARFVPCSECNGSCKVFAENATAA--GGFLRCPECNENGLVRC 147 (147)
T ss_pred CCCCCCCCcCeEECCCCCCcceEEeccCccc--ccEEECCCCCccccccC
Confidence 3599999999999999999998855432101 11357999999888877
No 70
>PRK14288 chaperone protein DnaJ; Provisional
Probab=95.78 E-value=0.0061 Score=62.06 Aligned_cols=61 Identities=23% Similarity=0.526 Sum_probs=38.3
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
.++|++..+|.+.... -.+- ....|..|+|+|.... . ..+|+.
T Consensus 119 ~l~vslee~~~G~~~~----i~~~-------------r~~~C~~C~G~G~~~~-~-------------------~~~C~~ 161 (369)
T PRK14288 119 TIELSFKEAVFGCKKT----IKVQ-------------YQSVCESCDGTGAKDK-A-------------------LETCKQ 161 (369)
T ss_pred eccccHHHHhCCeEEE----EEEE-------------eeccCCCCCCcccCCC-C-------------------CcCCCC
Confidence 4677888888776655 2221 1346888888774211 0 124666
Q ss_pred CCCCcee-----------eCCCCCCceeC
Q 040777 363 CEGLGYT-----------ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~-----------~C~~C~G~G~v 380 (380)
|+|+|.+ .|+.|+|+|.+
T Consensus 162 C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 190 (369)
T PRK14288 162 CNGQGQVFMRQGFMSFAQTCGACQGKGKI 190 (369)
T ss_pred CCCCcEEEEEeceEEEEEecCCCCCCceE
Confidence 6666643 79999999963
No 71
>PRK14289 chaperone protein DnaJ; Provisional
Probab=95.68 E-value=0.0063 Score=62.20 Aligned_cols=46 Identities=28% Similarity=0.686 Sum_probs=27.4
Q ss_pred cccCCCCCCcce------EeeeeccCcccccccCcceeeecCcccCCCCCCCce----eeCCCCCCceeC
Q 040777 321 TTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGY----TICDVCEGKAVV 380 (380)
Q Consensus 321 ~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~----~~C~~C~G~G~v 380 (380)
.+.|..|+|+|. ..|..|+|+|.+... .+. +.|. ..|..|+|.|++
T Consensus 154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~----------~~G~~~~~~~C~~C~G~G~~ 209 (386)
T PRK14289 154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRV----QNT----------ILGTMQTQSTCPTCNGEGKI 209 (386)
T ss_pred ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEE----Eec----------ccceEEEEEecCCCCccccc
Confidence 456888888875 346666666655321 111 1122 289999999863
No 72
>PRK14283 chaperone protein DnaJ; Provisional
Probab=95.52 E-value=0.0069 Score=61.79 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=46.3
Q ss_pred ceecccceeeeeccceeec-------------ccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCc
Q 040777 283 EVDLSERRVFLLGENRWEE-------------PSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQ 349 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~-------------p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg 349 (380)
++++|.|....+..++... +...| ..|+|+|.... ...+.-+.......|..|+|+|...
T Consensus 130 Led~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C-~~C~G~G~~~~--~~~~~~g~~~~~~~C~~C~G~G~~~---- 202 (378)
T PRK14283 130 LEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTC-PTCGGTGQVKQ--VRNTILGQMMNVTTCPDCQGEGKIV---- 202 (378)
T ss_pred HHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccC-CCcCCccEEEE--EEeccCceEEEEEECCCCCccceec----
Confidence 6778878777776655432 12334 88888876521 2233333333356899999999772
Q ss_pred ceeeecCcccCCCCCCCcee
Q 040777 350 FIEWVDEGMKCPYCEGLGYT 369 (380)
Q Consensus 350 ~~~~~~~~~~C~~C~G~G~~ 369 (380)
..+|..|.|+|.+
T Consensus 203 -------~~~C~~C~G~g~v 215 (378)
T PRK14283 203 -------EKPCSNCHGKGVV 215 (378)
T ss_pred -------CCCCCCCCCceee
Confidence 2469999998876
No 73
>PF09374 PG_binding_3: Predicted Peptidoglycan domain; InterPro: IPR018537 This family contains a potential peptidoglycan binding domain. ; PDB: 2IKB_B 2IS5_A 2NR7_A.
Probab=95.45 E-value=0.014 Score=46.13 Aligned_cols=27 Identities=44% Similarity=0.633 Sum_probs=15.7
Q ss_pred HHHHHHHHHcC----CCCCCccCHHHHHHHh
Q 040777 203 RAVKTWQAAMG----VTEDGIMTSELLESLY 229 (380)
Q Consensus 203 ~AVk~FQ~~~G----L~~DGivg~~T~~~L~ 229 (380)
.||+..|+..| +.+||+||+.|+.+|.
T Consensus 1 rAik~LQ~alg~~~~v~~DG~iGp~Tl~Al~ 31 (72)
T PF09374_consen 1 RAIKFLQRALGLGADVAVDGIIGPKTLAALN 31 (72)
T ss_dssp HHHHHHHHHHT----S--SS--SHHHHHHHH
T ss_pred CHHHHHHHHHccCCccCCCCCcCHHHHHHHh
Confidence 36666777777 7777777777777773
No 74
>PRK14281 chaperone protein DnaJ; Provisional
Probab=95.42 E-value=0.0096 Score=61.21 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=9.6
Q ss_pred eCCCCCCceeC
Q 040777 370 ICDVCEGKAVV 380 (380)
Q Consensus 370 ~C~~C~G~G~v 380 (380)
.|..|+|.|.+
T Consensus 207 ~C~~C~G~G~~ 217 (397)
T PRK14281 207 ACPTCGGEGRV 217 (397)
T ss_pred ecCCCcceeee
Confidence 79999999963
No 75
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=95.34 E-value=0.011 Score=61.33 Aligned_cols=67 Identities=19% Similarity=0.521 Sum_probs=37.3
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce-----EeeeeccCcccccccCcceeeecCc
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR-----LMCLECDGTGEPNIEPQFIEWVDEG 357 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~-----~~C~~C~GsG~~~~~pg~~~~~~~~ 357 (380)
.+.+++..+|.+.... -.+ .....|..|+|+|. ..|..|+|+|.... ..++
T Consensus 129 ~l~vtLee~~~G~~~~----i~~-------------~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~----~~~~--- 184 (421)
T PTZ00037 129 HLKVTLEQIYNGAMRK----LAI-------------NKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQ----IRQM--- 184 (421)
T ss_pred EeeeeHHHHhCCCceE----EEe-------------eccccccccCCCCCCCCCCccCCCCCCCCeEEE----EEee---
Confidence 4667777777776655 222 12456888888884 23444444443211 0000
Q ss_pred ccCCCCCCCc----eeeCCCCCCceeC
Q 040777 358 MKCPYCEGLG----YTICDVCEGKAVV 380 (380)
Q Consensus 358 ~~C~~C~G~G----~~~C~~C~G~G~v 380 (380)
|.. ...|..|+|.|.+
T Consensus 185 -------g~~~~q~~~~C~~C~G~G~~ 204 (421)
T PTZ00037 185 -------GSMIHQTQSTCNSCNGQGKI 204 (421)
T ss_pred -------cceeeEEEEeCCCCCCccee
Confidence 110 1289999999964
No 76
>PRK14290 chaperone protein DnaJ; Provisional
Probab=95.31 E-value=0.011 Score=59.96 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=9.6
Q ss_pred eCCCCCCceeC
Q 040777 370 ICDVCEGKAVV 380 (380)
Q Consensus 370 ~C~~C~G~G~v 380 (380)
.|..|+|.|++
T Consensus 193 ~C~~C~G~G~~ 203 (365)
T PRK14290 193 TCRTCGGRGRI 203 (365)
T ss_pred eCCCCCCceeE
Confidence 89999999963
No 77
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=95.20 E-value=0.011 Score=55.11 Aligned_cols=11 Identities=36% Similarity=0.893 Sum_probs=7.6
Q ss_pred cCCCCCCCcee
Q 040777 359 KCPYCEGLGYT 369 (380)
Q Consensus 359 ~C~~C~G~G~~ 369 (380)
+|+.|+|+|++
T Consensus 117 ~C~~C~G~G~v 127 (186)
T TIGR02642 117 ECDTCAGTGRF 127 (186)
T ss_pred CCCCCCCccEE
Confidence 57777777766
No 78
>PRK14293 chaperone protein DnaJ; Provisional
Probab=94.79 E-value=0.019 Score=58.59 Aligned_cols=67 Identities=30% Similarity=0.623 Sum_probs=41.9
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce------EeeeeccCcccccccCcceeeecC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR------LMCLECDGTGEPNIEPQFIEWVDE 356 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~------~~C~~C~GsG~~~~~pg~~~~~~~ 356 (380)
.+.+++.++|.+...+ -.+ .....|..|+|.|. ..|..|+|+|.+... .+
T Consensus 122 ~l~vsLee~~~G~~k~----i~~-------------~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~--- 177 (374)
T PRK14293 122 DLKLDFREAIFGGEKE----IRI-------------PHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRA----TR--- 177 (374)
T ss_pred EEEeeHHHHhCCceEE----EEe-------------eccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEE----Ee---
Confidence 4678888888877665 222 22467999988885 346666666655221 11
Q ss_pred cccCCCCCCCcee----eCCCCCCceeC
Q 040777 357 GMKCPYCEGLGYT----ICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~~----~C~~C~G~G~v 380 (380)
.+.|.+ .|..|+|.|++
T Consensus 178 -------~~~g~~~~~~~C~~C~G~G~~ 198 (374)
T PRK14293 178 -------TPFGSFTQVSECPTCNGTGQV 198 (374)
T ss_pred -------cCcceEEEEeeCCCCCcceeE
Confidence 123332 89999999963
No 79
>PRK14292 chaperone protein DnaJ; Provisional
Probab=93.99 E-value=0.023 Score=57.74 Aligned_cols=39 Identities=36% Similarity=0.744 Sum_probs=28.1
Q ss_pred ccCCCCCCCCCCCCC---------cccCCCCCCcceE---eeeeccCcccc
Q 040777 306 AGRGNQDAGSKAKKA---------TTQCLTCRGEGRL---MCLECDGTGEP 344 (380)
Q Consensus 306 ~~~~c~G~G~~~~~~---------~~~C~~C~G~G~~---~C~~C~GsG~~ 344 (380)
.|..|+|+|...... ...|..|+|.|.. .|..|+|.|.+
T Consensus 159 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v 209 (371)
T PRK14292 159 TCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRT 209 (371)
T ss_pred cCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEE
Confidence 349999998653211 2469999999974 68888888865
No 80
>TIGR02642 phage_xxxx uncharacterized phage protein. This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.
Probab=93.76 E-value=0.031 Score=51.99 Aligned_cols=16 Identities=13% Similarity=-0.161 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHHcC
Q 040777 198 STGTERAVKTWQAAMG 213 (380)
Q Consensus 198 g~~T~~AVk~FQ~~~G 213 (380)
+....+|+--=|+.+.
T Consensus 33 ~~dvmaA~g~~q~~~~ 48 (186)
T TIGR02642 33 KEQLLGAIALAQRDNP 48 (186)
T ss_pred HHHHHHHHHHHHhhCC
Confidence 3444445544454443
No 81
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.038 Score=54.66 Aligned_cols=24 Identities=25% Similarity=0.554 Sum_probs=17.2
Q ss_pred CCCCCCCCCCCCCcccCCCCCCcc
Q 040777 308 RGNQDAGSKAKKATTQCLTCRGEG 331 (380)
Q Consensus 308 ~~c~G~G~~~~~~~~~C~~C~G~G 331 (380)
..|.|.|...+.....|..|.|.|
T Consensus 168 ~t~~~~~~~~~~~~~~~~~~~~~~ 191 (288)
T KOG0715|consen 168 ETCFGSGAEEGAKRESCKTCSGRG 191 (288)
T ss_pred ccccCcCcccccccccchhhhCcc
Confidence 777777777666666677777776
No 82
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=86.14 E-value=0.92 Score=50.38 Aligned_cols=55 Identities=27% Similarity=0.479 Sum_probs=33.2
Q ss_pred eeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCc-------ceEeeeeccCcccccccCcceeeecCcccCCCC
Q 040777 291 VFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGE-------GRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYC 363 (380)
Q Consensus 291 v~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~-------G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C 363 (380)
+.++=-.|=+-|..+| ..|+- +..|+.|+.. |...|+.|+-...+ ...||.|
T Consensus 423 ~llflnRRGys~~l~C-~~Cg~--------v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~------------p~~Cp~C 481 (730)
T COG1198 423 VLLFLNRRGYAPLLLC-RDCGY--------IAECPNCDSPLTLHKATGQLRCHYCGYQEPI------------PQSCPEC 481 (730)
T ss_pred EEEEEccCCccceeec-ccCCC--------cccCCCCCcceEEecCCCeeEeCCCCCCCCC------------CCCCCCC
Confidence 3333344555667777 77742 4568888753 45667777655333 3457777
Q ss_pred CCC
Q 040777 364 EGL 366 (380)
Q Consensus 364 ~G~ 366 (380)
++.
T Consensus 482 gs~ 484 (730)
T COG1198 482 GSE 484 (730)
T ss_pred CCC
Confidence 665
No 83
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.05 E-value=0.53 Score=47.66 Aligned_cols=66 Identities=23% Similarity=0.555 Sum_probs=46.6
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcce-----EeeeeccCcccccccCcceeeecCc
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGR-----LMCLECDGTGEPNIEPQFIEWVDEG 357 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~-----~~C~~C~GsG~~~~~pg~~~~~~~~ 357 (380)
.+.+++..+|++++.. ..+ .....|+.|+|.|. ..|..|.|+|.....
T Consensus 106 ~~~~~Le~~y~G~s~k----l~l-------------~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~---------- 158 (337)
T KOG0712|consen 106 QLKVTLEELYMGKSKK----LFL-------------SRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRT---------- 158 (337)
T ss_pred EEEEEHHHhhcCCccc----eec-------------ccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEE----------
Confidence 4789999999996655 222 22457999999996 358888888866321
Q ss_pred ccCCCCCCCcee-----eCCCCCCcee
Q 040777 358 MKCPYCEGLGYT-----ICDVCEGKAV 379 (380)
Q Consensus 358 ~~C~~C~G~G~~-----~C~~C~G~G~ 379 (380)
.+.|.|.+ .|..|+|.|.
T Consensus 159 ----~~~gPg~~qs~q~~C~~C~G~G~ 181 (337)
T KOG0712|consen 159 ----RQMGPGMVQSPQLVCDSCNGSGE 181 (337)
T ss_pred ----EeccccccccceeEeccCCCccc
Confidence 22355555 9999999986
No 84
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.34 E-value=0.91 Score=48.24 Aligned_cols=56 Identities=25% Similarity=0.397 Sum_probs=34.6
Q ss_pred eeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCC-------cceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 290 RVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRG-------EGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 290 rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G-------~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
.++++--++=+-|...| ..|+. ...|+.|++ .+...|+.|+-+-.+ ...||.
T Consensus 200 qvLvflnrrGya~~~~C-~~Cg~--------~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~------------~~~Cp~ 258 (505)
T TIGR00595 200 QSILFLNRRGYSKNLLC-RSCGY--------ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPI------------PKTCPQ 258 (505)
T ss_pred cEEEEEeCCcCCCeeEh-hhCcC--------ccCCCCCCCceEEecCCCeEEcCCCcCcCCC------------CCCCCC
Confidence 56666556656677777 88842 457999983 344667777543322 345777
Q ss_pred CCCC
Q 040777 363 CEGL 366 (380)
Q Consensus 363 C~G~ 366 (380)
|++.
T Consensus 259 C~s~ 262 (505)
T TIGR00595 259 CGSE 262 (505)
T ss_pred CCCC
Confidence 7654
No 85
>PF09374 PG_binding_3: Predicted Peptidoglycan domain; InterPro: IPR018537 This family contains a potential peptidoglycan binding domain. ; PDB: 2IKB_B 2IS5_A 2NR7_A.
Probab=84.74 E-value=0.9 Score=35.82 Aligned_cols=29 Identities=21% Similarity=-0.077 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHH
Q 040777 172 DVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAV 205 (380)
Q Consensus 172 ~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AV 205 (380)
.|+.||+.|. .|..-.+||++ |+.|.+|+
T Consensus 2 Aik~LQ~alg--~~~~v~~DG~i---Gp~Tl~Al 30 (72)
T PF09374_consen 2 AIKFLQRALG--LGADVAVDGII---GPKTLAAL 30 (72)
T ss_dssp HHHHHHHHHT------S--SS-----SHHHHHHH
T ss_pred HHHHHHHHHc--cCCccCCCCCc---CHHHHHHH
Confidence 5889999996 34445899999 99999999
No 86
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=84.43 E-value=2.5 Score=28.36 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=24.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 040777 70 REEQRWIRERESLLREISELKLQIKALENR 99 (380)
Q Consensus 70 ~~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 99 (380)
.||+|..+|-+.|.+.++.|+..++.|.++
T Consensus 1 adEqkL~sekeqLrrr~eqLK~kLeqlrnS 30 (32)
T PF02344_consen 1 ADEQKLISEKEQLRRRREQLKHKLEQLRNS 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 378889999999999999999999988764
No 87
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.63 E-value=0.46 Score=54.10 Aligned_cols=33 Identities=36% Similarity=0.767 Sum_probs=19.1
Q ss_pred eeeccCcccccccCcceeeecCcccCCCCCCCcee
Q 040777 335 CLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT 369 (380)
Q Consensus 335 C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~ 369 (380)
|..|+|.|.+.+.-+|+..+ ..+|+.|+|+...
T Consensus 739 C~~C~G~G~~~~~~~f~~~~--~~~C~~C~G~R~~ 771 (924)
T TIGR00630 739 CEACQGDGVIKIEMHFLPDV--YVPCEVCKGKRYN 771 (924)
T ss_pred CCCCccceEEEEEccCCCCc--ccCCCCcCCceeC
Confidence 55555555555444444443 5677777777654
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=81.78 E-value=1.5 Score=48.27 Aligned_cols=43 Identities=28% Similarity=0.453 Sum_probs=25.5
Q ss_pred eeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCc-------ceEeeeeccCc
Q 040777 290 RVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGE-------GRLMCLECDGT 341 (380)
Q Consensus 290 rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~-------G~~~C~~C~Gs 341 (380)
+++++--+|=+-|...| ..|+- ...|+.|++. +...|+.|+.+
T Consensus 368 qvll~~nrrGy~~~~~C-~~Cg~--------~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 368 QVLLFLNRRGYAPFLLC-RDCGW--------VAECPHCDASLTLHRFQRRLRCHHCGYQ 417 (679)
T ss_pred eEEEEEcCCCCCCceEh-hhCcC--------ccCCCCCCCceeEECCCCeEECCCCcCC
Confidence 45555555555666677 77742 4568888753 23456666443
No 89
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=78.40 E-value=3.4 Score=43.75 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHcCCCCCCC-CCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhh
Q 040777 172 DVKAMQEELLKLGFFSGEE-DMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYM 230 (380)
Q Consensus 172 ~V~~LQ~~L~~lGy~~g~v-DG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~ 230 (380)
.+..++..|...||..... .+.. .++..+.+|++.||..+||.++|.+|..|+..|..
T Consensus 29 ~~~~~~~yl~~~~y~~~~~~~~~~-~~~~~~~~al~~~q~~~~l~~tG~lD~~Tl~~m~~ 87 (469)
T KOG1565|consen 29 DKVALQDYLECYGYLPPTDLTATR-ASQNVLEDALKMMQDFFGLPVTGKLDNATLALMNK 87 (469)
T ss_pred chhHHHHHhhhcccCCCccccccc-cCchhhHHHHHhhhhhcCccccCCcchhhhhhccC
Confidence 6788999999999987432 1211 13789999999999999999999999999998873
No 90
>PRK14873 primosome assembly protein PriA; Provisional
Probab=77.32 E-value=2.3 Score=46.93 Aligned_cols=45 Identities=24% Similarity=0.398 Sum_probs=27.9
Q ss_pred cccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCc-------ceEeeeecc
Q 040777 286 LSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGE-------GRLMCLECD 339 (380)
Q Consensus 286 ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~-------G~~~C~~C~ 339 (380)
|..|.+.++--.|=+-|...| ..|+- ...|+.|++. +...|+.|.
T Consensus 366 L~~gqvll~lnRrGyap~l~C-~~Cg~--------~~~C~~C~~~L~~h~~~~~l~Ch~CG 417 (665)
T PRK14873 366 LEHGPVLVQVPRRGYVPSLAC-ARCRT--------PARCRHCTGPLGLPSAGGTPRCRWCG 417 (665)
T ss_pred HhcCcEEEEecCCCCCCeeEh-hhCcC--------eeECCCCCCceeEecCCCeeECCCCc
Confidence 445566666666666677777 77842 4568888753 235566664
No 91
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=75.96 E-value=1.1 Score=51.15 Aligned_cols=33 Identities=36% Similarity=0.765 Sum_probs=16.6
Q ss_pred eeeccCcccccccCcceeeecCcccCCCCCCCcee
Q 040777 335 CLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT 369 (380)
Q Consensus 335 C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~ 369 (380)
|..|+|.|.+.+.-+|+..+ ..+|+.|+|+...
T Consensus 741 C~~C~G~G~~~~~~~f~~~~--~~~C~~C~G~R~~ 773 (943)
T PRK00349 741 CEACQGDGVIKIEMHFLPDV--YVPCDVCKGKRYN 773 (943)
T ss_pred CCcccccceEEEEeccCCCc--cccCccccCcccc
Confidence 44444444443333333333 4567777776543
No 92
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=74.36 E-value=1.4 Score=53.46 Aligned_cols=32 Identities=31% Similarity=0.683 Sum_probs=15.9
Q ss_pred eeeccCcccccccCcceeeecCcccCCCCCCCce
Q 040777 335 CLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGY 368 (380)
Q Consensus 335 C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~ 368 (380)
|..|+|.|.+.+.-.|+..+ .++|+.|+|+.+
T Consensus 1610 C~~C~G~G~i~i~m~fl~dv--~~~C~~C~G~R~ 1641 (1809)
T PRK00635 1610 CSDCWGLGYQWIDRAFYALE--KRPCPTCSGFRI 1641 (1809)
T ss_pred CCCCccCceEEEecccCCCc--ccCCCCCCCcCC
Confidence 44444444443333344433 556777777654
No 93
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.28 E-value=1.9 Score=49.16 Aligned_cols=23 Identities=43% Similarity=1.029 Sum_probs=20.3
Q ss_pred cccCCCCCCCcee------------eCCCCCCcee
Q 040777 357 GMKCPYCEGLGYT------------ICDVCEGKAV 379 (380)
Q Consensus 357 ~~~C~~C~G~G~~------------~C~~C~G~G~ 379 (380)
.-.|+.|.|.|.+ .|+.|+|+++
T Consensus 736 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 770 (924)
T TIGR00630 736 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRY 770 (924)
T ss_pred CCCCCCCccceEEEEEccCCCCcccCCCCcCCcee
Confidence 3469999999998 8999999976
No 94
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=70.90 E-value=2.9 Score=37.44 Aligned_cols=36 Identities=28% Similarity=0.637 Sum_probs=26.1
Q ss_pred ceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee------------eCCCCCCceeC
Q 040777 331 GRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT------------ICDVCEGKAVV 380 (380)
Q Consensus 331 G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~------------~C~~C~G~G~v 380 (380)
+...|..|.|.+.+ +|..|+|+-++ +|+.|+-.|.+
T Consensus 98 ~~~~C~~Cgg~rfv--------------~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~ 145 (147)
T cd03031 98 GGGVCEGCGGARFV--------------PCSECNGSCKVFAENATAAGGFLRCPECNENGLV 145 (147)
T ss_pred CCCCCCCCCCcCeE--------------ECCCCCCcceEEeccCcccccEEECCCCCccccc
Confidence 34458888887765 69999887333 88989877754
No 95
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=70.16 E-value=1.8 Score=48.55 Aligned_cols=31 Identities=35% Similarity=0.718 Sum_probs=15.7
Q ss_pred eeeccCcccccccCcceeeecCcccCCCCCCCc
Q 040777 335 CLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLG 367 (380)
Q Consensus 335 C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G 367 (380)
|..|.|.|.+.+.-.|+..+ .++|+.|+|+-
T Consensus 733 Ce~C~GdG~ikIeM~FLpdV--yv~CevC~GkR 763 (935)
T COG0178 733 CEACQGDGVIKIEMHFLPDV--YVPCEVCHGKR 763 (935)
T ss_pred CccccCCceEEEEeccCCCc--eeeCCCcCCcc
Confidence 55555555554444444433 45566666653
No 96
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=66.55 E-value=3.4 Score=46.53 Aligned_cols=23 Identities=43% Similarity=1.018 Sum_probs=20.4
Q ss_pred cccCCCCCCCcee------------eCCCCCCcee
Q 040777 357 GMKCPYCEGLGYT------------ICDVCEGKAV 379 (380)
Q Consensus 357 ~~~C~~C~G~G~~------------~C~~C~G~G~ 379 (380)
.-+|..|+|.|.+ +|..|+|+.+
T Consensus 730 GGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRY 764 (935)
T COG0178 730 GGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRY 764 (935)
T ss_pred CcCCccccCCceEEEEeccCCCceeeCCCcCCccc
Confidence 4589999999998 9999999864
No 97
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=66.46 E-value=5.9 Score=38.16 Aligned_cols=27 Identities=41% Similarity=0.567 Sum_probs=13.9
Q ss_pred HHHHHHHHHcC----CCCCCccCHHHHHHHh
Q 040777 203 RAVKTWQAAMG----VTEDGIMTSELLESLY 229 (380)
Q Consensus 203 ~AVk~FQ~~~G----L~~DGivg~~T~~~L~ 229 (380)
.|++..|+..| +.+||+||..|+.+|.
T Consensus 95 rAa~~LQkal~~~~~v~~DGvIG~~TLaAl~ 125 (252)
T COG3926 95 RAAKWLQKALGPAYTVRVDGVIGAQTLAALK 125 (252)
T ss_pred hHHHHHHHHhccCCcccccCcccHHHHHHHH
Confidence 44555555555 5555555555555554
No 98
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=66.31 E-value=3.9 Score=40.36 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=24.8
Q ss_pred EeeeeccCcccccccCcceeeecCcccCCCCCCCcee-----------eCCCCCCceeC
Q 040777 333 LMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT-----------ICDVCEGKAVV 380 (380)
Q Consensus 333 ~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~-----------~C~~C~G~G~v 380 (380)
..|..|.|.+.+ +|..|+|+-++ +|..|+=.|.|
T Consensus 230 ~~C~~CGg~rFl--------------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARFL--------------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcceE--------------ecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 468888777655 68888887554 88888877754
No 99
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=65.24 E-value=3.8 Score=39.69 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=17.6
Q ss_pred ccCCCCCCcceEeeeeccCcccccc
Q 040777 322 TQCLTCRGEGRLMCLECDGTGEPNI 346 (380)
Q Consensus 322 ~~C~~C~G~G~~~C~~C~GsG~~~~ 346 (380)
..|....|.+.+.|+.|.|+|++..
T Consensus 28 ~py~e~~g~~~vtCPTCqGtGrIP~ 52 (238)
T PF07092_consen 28 FPYVEFTGRDSVTCPTCQGTGRIPR 52 (238)
T ss_pred CccccccCCCCCcCCCCcCCccCCc
Confidence 3456667777778888888887743
No 100
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=64.79 E-value=3.5 Score=47.28 Aligned_cols=23 Identities=48% Similarity=1.058 Sum_probs=20.0
Q ss_pred cccCCCCCCCcee------------eCCCCCCcee
Q 040777 357 GMKCPYCEGLGYT------------ICDVCEGKAV 379 (380)
Q Consensus 357 ~~~C~~C~G~G~~------------~C~~C~G~G~ 379 (380)
.-.|+.|.|.|.+ .|+.|+|+.+
T Consensus 738 ~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~ 772 (943)
T PRK00349 738 GGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRY 772 (943)
T ss_pred CCCCCcccccceEEEEeccCCCccccCccccCccc
Confidence 3469999999998 8999999875
No 101
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=63.13 E-value=4.6 Score=49.18 Aligned_cols=8 Identities=50% Similarity=1.398 Sum_probs=3.8
Q ss_pred CCCCCCcc
Q 040777 324 CLTCRGEG 331 (380)
Q Consensus 324 C~~C~G~G 331 (380)
|+.|.|.|
T Consensus 723 C~~c~g~g 730 (1809)
T PRK00635 723 CAECQGLG 730 (1809)
T ss_pred CCcceeeE
Confidence 44444444
No 102
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=61.34 E-value=4.2 Score=40.31 Aligned_cols=55 Identities=38% Similarity=0.808 Sum_probs=41.4
Q ss_pred cccCCCCCCcce------EeeeeccCcccccc--cCcceeeecCcccCCCCCCCcee---eCCCCCCceeC
Q 040777 321 TTQCLTCRGEGR------LMCLECDGTGEPNI--EPQFIEWVDEGMKCPYCEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 321 ~~~C~~C~G~G~------~~C~~C~GsG~~~~--~pg~~~~~~~~~~C~~C~G~G~~---~C~~C~G~G~v 380 (380)
...|..|.|.|. ..|..|.|+|.... .+.+.. . +|..|.|.|.+ .|..|.|.|.|
T Consensus 164 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~----~-~~~~c~~~~~~~~~~c~~~~g~~~v 229 (288)
T KOG0715|consen 164 LSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFIL----Y-TCSYCLGRGLVLRDNCQACSGAGQV 229 (288)
T ss_pred ecccccccCcCcccccccccchhhhCcccccccccCCcce----e-ecccccccceeccchHHHhhcchhh
Confidence 347999999995 46999999994422 122211 1 69999999999 69999998753
No 103
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=61.21 E-value=10 Score=33.42 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 040777 77 RERESLLREISELKLQIKALEN 98 (380)
Q Consensus 77 ~~~~~~~~e~~~~~~~~~~~~~ 98 (380)
+||..|..|+++|+.+|..||+
T Consensus 18 rdR~~WeiERaEmkarIa~LEG 39 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFLEG 39 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544
No 104
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=59.45 E-value=19 Score=37.82 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 040777 79 RESLLREISELKLQIKALENR 99 (380)
Q Consensus 79 ~~~~~~e~~~~~~~~~~~~~~ 99 (380)
=+.|++|+.+|+.|..+||..
T Consensus 27 i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 27 IKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777654
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=58.31 E-value=7.4 Score=43.43 Aligned_cols=48 Identities=21% Similarity=0.472 Sum_probs=34.2
Q ss_pred cccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee--eCCCCCCc
Q 040777 321 TTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT--ICDVCEGK 377 (380)
Q Consensus 321 ~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~--~C~~C~G~ 377 (380)
...|..|.- ...|..|+..= .+.+......|.+|+-...+ .|+.|.+.
T Consensus 435 ~l~C~~Cg~--v~~Cp~Cd~~l-------t~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 435 LLLCRDCGY--IAECPNCDSPL-------TLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred eeecccCCC--cccCCCCCcce-------EEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 567999962 35799997641 12222346789999887666 99999886
No 106
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=55.08 E-value=8.2 Score=45.29 Aligned_cols=32 Identities=16% Similarity=0.417 Sum_probs=19.6
Q ss_pred cccccCCCCCCCCCCCCCcccCCCCCCcc--eEeeeeccC
Q 040777 303 SRLAGRGNQDAGSKAKKATTQCLTCRGEG--RLMCLECDG 340 (380)
Q Consensus 303 ~~l~~~~c~G~G~~~~~~~~~C~~C~G~G--~~~C~~C~G 340 (380)
.+.| .+|+...- ...|+.|...- ...|..|+.
T Consensus 667 ~rkC-PkCG~~t~-----~~fCP~CGs~te~vy~CPsCGa 700 (1337)
T PRK14714 667 RRRC-PSCGTETY-----ENRCPDCGTHTEPVYVCPDCGA 700 (1337)
T ss_pred EEEC-CCCCCccc-----cccCcccCCcCCCceeCccCCC
Confidence 4556 88865322 13788887764 345777755
No 107
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.09 E-value=8.7 Score=40.92 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=33.4
Q ss_pred CcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee--eCCCCCCc
Q 040777 320 ATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT--ICDVCEGK 377 (380)
Q Consensus 320 ~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~--~C~~C~G~ 377 (380)
....|..|.- ...|..|++.=.. ........|..|+-.-.+ .|+.|.+.
T Consensus 212 ~~~~C~~Cg~--~~~C~~C~~~l~~-------h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 212 KNLLCRSCGY--ILCCPNCDVSLTY-------HKKEGKLRCHYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred CeeEhhhCcC--ccCCCCCCCceEE-------ecCCCeEEcCCCcCcCCCCCCCCCCCCC
Confidence 4568999973 4689999764222 111224579999866655 99999875
No 108
>PRK04023 DNA polymerase II large subunit; Validated
Probab=53.71 E-value=9.3 Score=43.91 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=20.5
Q ss_pred cceeecccccccCCCCCCCCCCCCCcccCCCCCCc--ceEeeeec
Q 040777 296 ENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGE--GRLMCLEC 338 (380)
Q Consensus 296 e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~--G~~~C~~C 338 (380)
....+.-.+.| ..|+-.. ....|+.|... ....|..|
T Consensus 619 ~~eVEVg~RfC-psCG~~t-----~~frCP~CG~~Te~i~fCP~C 657 (1121)
T PRK04023 619 TIEVEIGRRKC-PSCGKET-----FYRRCPFCGTHTEPVYRCPRC 657 (1121)
T ss_pred ceeecccCccC-CCCCCcC-----CcccCCCCCCCCCcceeCccc
Confidence 33444445667 6775432 23567777765 34556666
No 109
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=53.40 E-value=4.9 Score=37.69 Aligned_cols=49 Identities=27% Similarity=0.693 Sum_probs=30.6
Q ss_pred cccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee------eCCCCC
Q 040777 321 TTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT------ICDVCE 375 (380)
Q Consensus 321 ~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~------~C~~C~ 375 (380)
+..|..|.|.|. .|-.|+....+ + | |.. .....|+.|+.-=.. .|+.|.
T Consensus 142 V~~C~lC~~kGf-iCe~C~~~~~I-f-P-F~~--~~~~~C~~C~~v~H~~C~~~~~CpkC~ 196 (202)
T PF13901_consen 142 VYSCELCQQKGF-ICEICNSDDII-F-P-FQI--DTTVRCPKCKSVFHKSCFRKKSCPKCA 196 (202)
T ss_pred HHHhHHHHhCCC-CCccCCCCCCC-C-C-CCC--CCeeeCCcCccccchhhcCCCCCCCcH
Confidence 447899999986 88889887433 2 2 111 125678888753222 677773
No 110
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=50.77 E-value=8.9 Score=37.67 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH
Q 040777 199 TGTERAVKTWQA 210 (380)
Q Consensus 199 ~~T~~AVk~FQ~ 210 (380)
..+..++...++
T Consensus 105 ~~~~~~l~~l~~ 116 (290)
T PF04216_consen 105 EAAAAALEALRA 116 (290)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455557777776
No 111
>PRK04023 DNA polymerase II large subunit; Validated
Probab=50.24 E-value=16 Score=42.04 Aligned_cols=47 Identities=26% Similarity=0.533 Sum_probs=32.0
Q ss_pred CCcccCCCCCCcce-EeeeeccCcccccccCcceeeecCcccCCCCCCCcee-eCCCCCCc
Q 040777 319 KATTQCLTCRGEGR-LMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT-ICDVCEGK 377 (380)
Q Consensus 319 ~~~~~C~~C~G~G~-~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~-~C~~C~G~ 377 (380)
.....|+.|+-.+. ..|..|...-.. ...|+.|.-.+.. .|+.|.-.
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~------------i~fCP~CG~~~~~y~CPKCG~E 672 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEP------------VYRCPRCGIEVEEDECEKCGRE 672 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCc------------ceeCccccCcCCCCcCCCCCCC
Confidence 44568999987654 679998765111 3469999665543 89999643
No 112
>PRK05580 primosome assembly protein PriA; Validated
Probab=50.08 E-value=10 Score=41.83 Aligned_cols=49 Identities=18% Similarity=0.441 Sum_probs=32.4
Q ss_pred CcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee--eCCCCCCc
Q 040777 320 ATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT--ICDVCEGK 377 (380)
Q Consensus 320 ~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~--~C~~C~G~ 377 (380)
....|..|.- ...|..|++.=. +........|..|+.+-.. .|+.|++.
T Consensus 380 ~~~~C~~Cg~--~~~C~~C~~~l~-------~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~ 430 (679)
T PRK05580 380 PFLLCRDCGW--VAECPHCDASLT-------LHRFQRRLRCHHCGYQEPIPKACPECGST 430 (679)
T ss_pred CceEhhhCcC--ccCCCCCCCcee-------EECCCCeEECCCCcCCCCCCCCCCCCcCC
Confidence 3567888873 467999977311 1111224579999876555 99999875
No 113
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=49.55 E-value=16 Score=35.36 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=30.2
Q ss_pred hHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHH
Q 040777 170 GEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQA 210 (380)
Q Consensus 170 g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~ 210 (380)
+..+++||+.|... +...+||.. |..|.+||+++-.
T Consensus 94 ~rAa~~LQkal~~~--~~v~~DGvI---G~~TLaAl~~~~~ 129 (252)
T COG3926 94 GRAAKWLQKALGPA--YTVRVDGVI---GAQTLAALKKDPA 129 (252)
T ss_pred chHHHHHHHHhccC--CcccccCcc---cHHHHHHHHhccc
Confidence 45789999999765 666899999 9999999998743
No 114
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=47.78 E-value=8.2 Score=39.29 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=17.3
Q ss_pred ccCCCCChH---hHHHHHHHHHHcCCCC
Q 040777 163 ALRVGSEGE---DVKAMQEELLKLGFFS 187 (380)
Q Consensus 163 ~Lk~G~~g~---~V~~LQ~~L~~lGy~~ 187 (380)
.+..|..++ -...|...+..+||..
T Consensus 101 ~~~~G~~HPl~~~~~~Ir~if~~mGF~e 128 (339)
T PRK00488 101 RIELGSLHPITQTIEEIEDIFVGMGFEV 128 (339)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 455666644 5566778889999864
No 115
>PRK05978 hypothetical protein; Provisional
Probab=46.59 E-value=9.7 Score=34.36 Aligned_cols=7 Identities=29% Similarity=0.852 Sum_probs=3.7
Q ss_pred ccCCCCC
Q 040777 358 MKCPYCE 364 (380)
Q Consensus 358 ~~C~~C~ 364 (380)
..|+.|+
T Consensus 53 ~~C~~CG 59 (148)
T PRK05978 53 DHCAACG 59 (148)
T ss_pred CCccccC
Confidence 4566663
No 116
>PRK14873 primosome assembly protein PriA; Provisional
Probab=45.61 E-value=16 Score=40.34 Aligned_cols=48 Identities=21% Similarity=0.555 Sum_probs=31.8
Q ss_pred CcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee--eCCCCCCc
Q 040777 320 ATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT--ICDVCEGK 377 (380)
Q Consensus 320 ~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~--~C~~C~G~ 377 (380)
....|..|.- ...|..|++.=..+. ......|..|+-.- . .|+.|.+.
T Consensus 382 p~l~C~~Cg~--~~~C~~C~~~L~~h~-------~~~~l~Ch~CG~~~-~p~~Cp~Cgs~ 431 (665)
T PRK14873 382 PSLACARCRT--PARCRHCTGPLGLPS-------AGGTPRCRWCGRAA-PDWRCPRCGSD 431 (665)
T ss_pred CeeEhhhCcC--eeECCCCCCceeEec-------CCCeeECCCCcCCC-cCccCCCCcCC
Confidence 3567999963 468999987432211 11245799997543 4 99999876
No 117
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.22 E-value=3.2e+02 Score=27.04 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHcCCCCCCCC--CcccCCCHHHHHHHHHHHHHcC
Q 040777 172 DVKAMQEELLKLGFFSGEED--MEYSSFSTGTERAVKTWQAAMG 213 (380)
Q Consensus 172 ~V~~LQ~~L~~lGy~~g~vD--G~f~~Fg~~T~~AVk~FQ~~~G 213 (380)
.|..||.+|.. |...|.+| |.|-+....--+||..|=+..|
T Consensus 231 ~inriq~~l~e-g~ltGVmDDRGKfIYIS~eEl~AVAkfIkqrG 273 (299)
T KOG3054|consen 231 SINRIQELLAE-GLLTGVMDDRGKFIYISMEELAAVAKFIKQRG 273 (299)
T ss_pred HHHHHHHHHHh-hhheeeecCCCceEEecHHHHHHHHHHHHHcC
Confidence 35567776653 55555544 6663347888999999987765
No 118
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=41.60 E-value=22 Score=32.00 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=8.3
Q ss_pred ecccceeeeeccce
Q 040777 285 DLSERRVFLLGENR 298 (380)
Q Consensus 285 ~ls~~rv~~l~e~r 298 (380)
++.++.+|.-|+.-
T Consensus 95 d~~h~g~Y~sGE~~ 108 (146)
T PF07295_consen 95 DLEHHGVYHSGEVV 108 (146)
T ss_pred HHHhcCCeecCcEe
Confidence 45555577766644
No 119
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=41.26 E-value=6.4 Score=39.05 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHH
Q 040777 172 DVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAA 211 (380)
Q Consensus 172 ~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~ 211 (380)
-.+.|+..|+.+ ...+ .....++|...++.
T Consensus 102 w~~~L~alla~~-----~~~a-----~~~~~a~ie~L~ka 131 (308)
T COG3058 102 WRKLLMALLAEL-----KPEA-----NAAALAAIEQLEKA 131 (308)
T ss_pred HHHHHHHHHHhc-----cccC-----cHHHHHHHHHHHHh
Confidence 345666666654 2233 34666777766654
No 120
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=40.95 E-value=23 Score=26.01 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=7.8
Q ss_pred ccCCCCCCcce
Q 040777 322 TQCLTCRGEGR 332 (380)
Q Consensus 322 ~~C~~C~G~G~ 332 (380)
+.|+.|.|...
T Consensus 2 kPCPfCGg~~~ 12 (53)
T TIGR03655 2 KPCPFCGGADV 12 (53)
T ss_pred CCCCCCCCcce
Confidence 46777877666
No 121
>PF15616 TerY-C: TerY-C metal binding domain
Probab=40.25 E-value=26 Score=31.08 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=9.6
Q ss_pred ccCCCCCCc-ceEee
Q 040777 322 TQCLTCRGE-GRLMC 335 (380)
Q Consensus 322 ~~C~~C~G~-G~~~C 335 (380)
-.||.|.-. +...|
T Consensus 78 PgCP~CGn~~~fa~C 92 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVC 92 (131)
T ss_pred CCCCCCcChhcEEEe
Confidence 458888665 66666
No 122
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=39.53 E-value=26 Score=23.60 Aligned_cols=6 Identities=33% Similarity=1.176 Sum_probs=2.8
Q ss_pred cCCCCC
Q 040777 359 KCPYCE 364 (380)
Q Consensus 359 ~C~~C~ 364 (380)
.|++|+
T Consensus 27 ~C~~C~ 32 (38)
T TIGR02098 27 RCGKCG 32 (38)
T ss_pred ECCCCC
Confidence 454443
No 123
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=38.82 E-value=10 Score=42.84 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=0.0
Q ss_pred cCCCCCCCcee-eCCCCC
Q 040777 359 KCPYCEGLGYT-ICDVCE 375 (380)
Q Consensus 359 ~C~~C~G~G~~-~C~~C~ 375 (380)
.|+.|+-.-.. .|+.|.
T Consensus 682 ~Cp~C~~~~~~~~C~~C~ 699 (900)
T PF03833_consen 682 VCPDCGIEVEEDECPKCG 699 (900)
T ss_dssp ------------------
T ss_pred eccccccccCcccccccc
Confidence 45555443222 555554
No 124
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=38.60 E-value=16 Score=35.51 Aligned_cols=16 Identities=38% Similarity=0.974 Sum_probs=12.7
Q ss_pred CCcccCCCCCCcceEe
Q 040777 319 KATTQCLTCRGEGRLM 334 (380)
Q Consensus 319 ~~~~~C~~C~G~G~~~ 334 (380)
.+..+|++|.|+|++.
T Consensus 36 ~~~vtCPTCqGtGrIP 51 (238)
T PF07092_consen 36 RDSVTCPTCQGTGRIP 51 (238)
T ss_pred CCCCcCCCCcCCccCC
Confidence 3467899999999853
No 125
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=38.29 E-value=16 Score=25.79 Aligned_cols=12 Identities=33% Similarity=0.900 Sum_probs=4.5
Q ss_pred ccCCCCCCcceE
Q 040777 322 TQCLTCRGEGRL 333 (380)
Q Consensus 322 ~~C~~C~G~G~~ 333 (380)
..|+.|.|+...
T Consensus 4 ~pCP~CGG~DrF 15 (40)
T PF08273_consen 4 GPCPICGGKDRF 15 (40)
T ss_dssp E--TTTT-TTTE
T ss_pred CCCCCCcCcccc
Confidence 345555555443
No 126
>PF12387 Peptidase_C74: Pestivirus NS2 peptidase; InterPro: IPR022120 The pestivirus NS2 peptidase is responsible for single cleavage between NS2 and NS3 of the Bovine viral diarrhea virus 1 polyprotein, a cleavage that is correlated with cytopathogenicity []. The peptidase is activated by its interaction with 'J-domain protein interacting with viral protein' - Jiv. ; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0004252 serine-type endopeptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0017111 nucleoside-triphosphatase activity, 0070008 serine-type exopeptidase activity
Probab=35.50 E-value=27 Score=32.48 Aligned_cols=10 Identities=40% Similarity=1.002 Sum_probs=4.8
Q ss_pred cCCCCCCCce
Q 040777 359 KCPYCEGLGY 368 (380)
Q Consensus 359 ~C~~C~G~G~ 368 (380)
+||.|++.|.
T Consensus 177 ~CPKCGr~G~ 186 (200)
T PF12387_consen 177 NCPKCGRHGK 186 (200)
T ss_pred CCCcccCCCC
Confidence 3555554444
No 127
>PRK11032 hypothetical protein; Provisional
Probab=35.44 E-value=30 Score=31.67 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=7.6
Q ss_pred ecccceeeeeccce
Q 040777 285 DLSERRVFLLGENR 298 (380)
Q Consensus 285 ~ls~~rv~~l~e~r 298 (380)
++-++-+|.-|+.-
T Consensus 107 dl~h~g~Y~sGEvv 120 (160)
T PRK11032 107 DLNHHGVYHSGEVV 120 (160)
T ss_pred HhhhcCeeecceee
Confidence 44455666666543
No 128
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=35.06 E-value=28 Score=24.19 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=6.6
Q ss_pred ccCCCCCCcceEe
Q 040777 322 TQCLTCRGEGRLM 334 (380)
Q Consensus 322 ~~C~~C~G~G~~~ 334 (380)
..|+.|.|+....
T Consensus 4 ~pCP~CGG~DrFr 16 (37)
T smart00778 4 GPCPNCGGSDRFR 16 (37)
T ss_pred cCCCCCCCccccc
Confidence 4455555554433
No 129
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.68 E-value=1.3e+02 Score=28.69 Aligned_cols=46 Identities=26% Similarity=0.452 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 040777 54 WLREEQRWLREEQRWFREEQRWIRERESLLREISELKLQIKALENR 99 (380)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 99 (380)
.....+.|...++.==.+...|..|++.|+.|+..|..|+..|+..
T Consensus 26 ~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 26 AQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVY 71 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888877788899999999999999999999888654
No 130
>PF14353 CpXC: CpXC protein
Probab=34.40 E-value=42 Score=28.72 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=22.1
Q ss_pred ccCCCCCCcceEeeee-ccCccccc----ccCcceeeecCcccCCCCCCCcee
Q 040777 322 TQCLTCRGEGRLMCLE-CDGTGEPN----IEPQFIEWVDEGMKCPYCEGLGYT 369 (380)
Q Consensus 322 ~~C~~C~G~G~~~C~~-C~GsG~~~----~~pg~~~~~~~~~~C~~C~G~G~~ 369 (380)
.+|+.|+..+...-.. -+..-... +-.|-+. ..+||+|+..+.+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~----~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLF----SFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcC----EEECCCCCCceec
Confidence 4688888777643322 22221110 0012122 3479999887765
No 131
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=32.92 E-value=72 Score=33.19 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 040777 63 REEQRWFREEQRWIRERESLLREISELKLQIKALENR 99 (380)
Q Consensus 63 ~~~~~~~~~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 99 (380)
|.-|.=|-|-...+.||+.|..|++..+.+++.|.-.
T Consensus 342 rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q 378 (442)
T PF06637_consen 342 RQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQ 378 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777778888888888888888776543
No 132
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=32.50 E-value=80 Score=27.79 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 040777 68 WFREEQRWIRERESLLREISELKLQIKALENR 99 (380)
Q Consensus 68 ~~~~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 99 (380)
.=|+...|.-||+.|.+.|+.|.-+.+.+|+.
T Consensus 16 ~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l 47 (134)
T PF08232_consen 16 FERDRNQWEIERAEMKARIAFLEGERRGQENL 47 (134)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999999999999888777766653
No 133
>PF03589 Antiterm: Antitermination protein; InterPro: IPR003222 This entry consists of antitermination proteins found in bacteriophages, such as protein Q from phage lambda, and some bacterial homologues. Protein Q positively regulates expression of the phage late gene operon by binding to the bacterial host RNA polymerase (RNAP) and modifying it. The modified RNAP transcribes through termination sites that otherwise prevent expression of the regulated genes [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=31.54 E-value=22 Score=29.62 Aligned_cols=12 Identities=42% Similarity=1.090 Sum_probs=8.3
Q ss_pred ccCCCCCCCcee
Q 040777 358 MKCPYCEGLGYT 369 (380)
Q Consensus 358 ~~C~~C~G~G~~ 369 (380)
..|..|.|.|..
T Consensus 33 k~c~rcgg~G~s 44 (95)
T PF03589_consen 33 KDCERCGGRGYS 44 (95)
T ss_pred hhhhhhcCCCCC
Confidence 457777777754
No 134
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=31.50 E-value=40 Score=32.19 Aligned_cols=57 Identities=26% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH--hccCCCCCCCccccchhhhHHHHHHhhhhccchhhhcccccchhchh
Q 040777 71 EEQRWIRERESLLREISELKLQIKAL--ENRNLSDGASVSVSDTISNIAGLLQMLKEKNMIAERATVAEKEKFEE 143 (380)
Q Consensus 71 ~~~r~~~~~~~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~ 143 (380)
+.+-|++.|++|+++..+|..++.+| ++|++ +...|.++..+.-+.|...-...|+.
T Consensus 8 s~eew~~Ar~~LL~~EKeltR~~dalaa~RR~L----------------P~v~v~~~Y~F~g~~G~v~L~dLF~G 66 (211)
T PF05988_consen 8 SREEWLAARDALLAREKELTRARDALAAERRRL----------------PMVEVDKDYVFDGPDGPVSLADLFEG 66 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------------CCccCCCCeEEeCCCCcccHHHHcCC
No 135
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=30.53 E-value=65 Score=32.47 Aligned_cols=41 Identities=17% Similarity=0.370 Sum_probs=22.7
Q ss_pred cccccCCCCCCC--------CCCCCCcccCCCCCCcc---eEeeeeccCcccc
Q 040777 303 SRLAGRGNQDAG--------SKAKKATTQCLTCRGEG---RLMCLECDGTGEP 344 (380)
Q Consensus 303 ~~l~~~~c~G~G--------~~~~~~~~~C~~C~G~G---~~~C~~C~GsG~~ 344 (380)
...| ..|++.- ...+.+.-.|..|...= +..|..|.-++.+
T Consensus 187 ~~~C-PvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~~l 238 (309)
T PRK03564 187 RQFC-PVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQSGKL 238 (309)
T ss_pred CCCC-CCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCCCce
Confidence 3445 7776542 22344555677776543 3567777655443
No 136
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.79 E-value=55 Score=32.98 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=5.7
Q ss_pred HHHHHHHHHc
Q 040777 174 KAMQEELLKL 183 (380)
Q Consensus 174 ~~LQ~~L~~l 183 (380)
..|+..|..+
T Consensus 105 ~~L~~Ll~~l 114 (309)
T PRK03564 105 KLLMALIAEL 114 (309)
T ss_pred HHHHHHHHHh
Confidence 4556666655
No 137
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=28.66 E-value=40 Score=25.25 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=16.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHh
Q 040777 72 EQRWIRERESLLREISELKLQIKALE 97 (380)
Q Consensus 72 ~~r~~~~~~~~~~e~~~~~~~~~~~~ 97 (380)
|.+|.+||+.=..+..+...+|..|+
T Consensus 10 e~klkaerE~R~~d~~~a~~rl~~l~ 35 (52)
T PF12808_consen 10 ERKLKAEREARSLDRSAARKRLSKLE 35 (52)
T ss_pred HHHHHHhHHhccCCchhHHHHHHHHH
Confidence 66777777666666666666666554
No 138
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=27.96 E-value=66 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 040777 76 IRERESLLREISELKLQIKALENR 99 (380)
Q Consensus 76 ~~~~~~~~~e~~~~~~~~~~~~~~ 99 (380)
+.+...+....+.|+.||..||.|
T Consensus 30 L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 30 LAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HccchHHHHHHHHHHHHHHHHhcC
Confidence 466777888888999999999975
No 139
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=26.22 E-value=4.3e+02 Score=23.75 Aligned_cols=31 Identities=29% Similarity=0.480 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 040777 57 EEQRWLREEQRWFREEQRWIRERESLLREISEL 89 (380)
Q Consensus 57 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~e~~~~ 89 (380)
..=|.|.++|. +-|.+|-.+|+++.+...+=
T Consensus 27 ~~Ir~Li~~Q~--~~Er~w~~~Re~l~~k~~~r 57 (150)
T PF10454_consen 27 QRIRRLIKEQH--DHERQWWEGREALIAKQKAR 57 (150)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 34456666664 66889999999999999843
No 140
>PHA00626 hypothetical protein
Probab=26.04 E-value=62 Score=24.75 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=7.2
Q ss_pred cCCCCCC-cceEeeeec
Q 040777 323 QCLTCRG-EGRLMCLEC 338 (380)
Q Consensus 323 ~C~~C~G-~G~~~C~~C 338 (380)
.|..|++ +....|..|
T Consensus 13 rcg~cr~~snrYkCkdC 29 (59)
T PHA00626 13 KEKTMRGWSDDYVCCDC 29 (59)
T ss_pred eeceecccCcceEcCCC
Confidence 4444444 334444444
No 141
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=24.67 E-value=46 Score=29.90 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=17.1
Q ss_pred cceeeeeccceeecccccccCCCCCCCCCCC-CCcccCCCCCCcce
Q 040777 288 ERRVFLLGENRWEEPSRLAGRGNQDAGSKAK-KATTQCLTCRGEGR 332 (380)
Q Consensus 288 ~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~-~~~~~C~~C~G~G~ 332 (380)
.|.+...|.-. | .+|+..-.... .....|+.|+|..+
T Consensus 104 sGE~~g~G~l~-------C-~~Cg~~~~~~~~~~l~~Cp~C~~~~F 141 (146)
T PF07295_consen 104 SGEVVGPGTLV-------C-ENCGHEVELTHPERLPPCPKCGHTEF 141 (146)
T ss_pred cCcEecCceEe-------c-ccCCCEEEecCCCcCCCCCCCCCCee
Confidence 55666555555 4 66644322221 12234555555443
No 142
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=24.13 E-value=68 Score=32.24 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=16.2
Q ss_pred CCCCcccCCCCCCcc---eEeeeeccCccc
Q 040777 317 AKKATTQCLTCRGEG---RLMCLECDGTGE 343 (380)
Q Consensus 317 ~~~~~~~C~~C~G~G---~~~C~~C~GsG~ 343 (380)
.+.+.-.|..|...= ++.|..|.-+..
T Consensus 206 ~G~RyL~CslC~teW~~~R~~C~~Cg~~~~ 235 (305)
T TIGR01562 206 TGLRYLSCSLCATEWHYVRVKCSHCEESKH 235 (305)
T ss_pred CCceEEEcCCCCCcccccCccCCCCCCCCc
Confidence 344456677776543 356777766543
No 143
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.00 E-value=38 Score=33.78 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCcccCCCCCCcceEeeeec
Q 040777 308 RGNQDAGSKAKKATTQCLTCRGEGRLMCLEC 338 (380)
Q Consensus 308 ~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C 338 (380)
.+|+|.|++.+.+.-+|. -|-+--.|..|
T Consensus 156 G~C~GdGsR~GsGkCkC~--~GY~Gp~C~~C 184 (350)
T KOG4260|consen 156 GSCHGDGSREGSGKCKCE--TGYTGPLCRYC 184 (350)
T ss_pred CcccCCCCCCCCCccccc--CCCCCcccccc
Confidence 358888888777665554 34444556655
No 144
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.83 E-value=93 Score=30.19 Aligned_cols=28 Identities=39% Similarity=0.621 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH--hccCC
Q 040777 74 RWIRERESLLREISELKLQIKAL--ENRNL 101 (380)
Q Consensus 74 r~~~~~~~~~~e~~~~~~~~~~~--~~~~~ 101 (380)
.|++-|++||++.-+|...+.+| |+|++
T Consensus 17 ~w~~AR~~lL~kEkeLtR~rd~vaaeRR~L 46 (247)
T COG4312 17 EWLAAREALLAKEKELTRARDAVAAERRAL 46 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45555666666666666666554 44444
No 145
>PF12172 DUF35_N: Rubredoxin-like zinc ribbon domain (DUF35_N); InterPro: IPR022002 This domain has no known function and is found in conserved hypothetical archaeal and bacterial proteins. The domain is duplicated in O53566 from SWISSPROT. The structure of a DUF35 representative reveals two long N-terminal helices followed by a rubredoxin-like zinc ribbon domain represented in this family and a C-terminal OB fold domain. Zinc is chelated by the four conserved cysteines in the alignment. ; PDB: 3IRB_A.
Probab=23.11 E-value=64 Score=21.67 Aligned_cols=27 Identities=33% Similarity=0.773 Sum_probs=11.6
Q ss_pred ceEeeeeccCcccccccCcceeeecCcccCCCCCC
Q 040777 331 GRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEG 365 (380)
Q Consensus 331 G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G 365 (380)
|.+.-.+|..-|.+.+.| ...|+.|.+
T Consensus 7 ~~l~~~rC~~Cg~~~~pP--------r~~Cp~C~s 33 (37)
T PF12172_consen 7 GRLLGQRCRDCGRVQFPP--------RPVCPHCGS 33 (37)
T ss_dssp T-EEEEE-TTT--EEES----------SEETTTT-
T ss_pred CEEEEEEcCCCCCEecCC--------CcCCCCcCc
Confidence 444555555566665544 446777754
No 146
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=23.06 E-value=56 Score=35.39 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=9.1
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 040777 71 EEQRWIRERESLLREISEL 89 (380)
Q Consensus 71 ~~~r~~~~~~~~~~e~~~~ 89 (380)
+..+|-.||..|.++|+-|
T Consensus 35 dr~~WElERaElqariAfL 53 (577)
T KOG0642|consen 35 DRARWELERAELQARIAFL 53 (577)
T ss_pred hhhheehhhhhHHHHHHHH
Confidence 4445555555554444443
No 147
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=22.99 E-value=59 Score=27.40 Aligned_cols=8 Identities=25% Similarity=0.766 Sum_probs=5.3
Q ss_pred cccCCCCC
Q 040777 321 TTQCLTCR 328 (380)
Q Consensus 321 ~~~C~~C~ 328 (380)
...|+.|+
T Consensus 21 ~f~CP~Cg 28 (99)
T PRK14892 21 IFECPRCG 28 (99)
T ss_pred EeECCCCC
Confidence 45677777
No 148
>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]
Probab=22.69 E-value=38 Score=38.81 Aligned_cols=45 Identities=31% Similarity=0.469 Sum_probs=29.2
Q ss_pred ecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcc
Q 040777 285 DLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTG 342 (380)
Q Consensus 285 ~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG 342 (380)
=+.++.+ +.++.| .+.++.| ..| +-.|.+|+|.|...|..|..-+
T Consensus 518 CVe~C~~-l~g~~r-f~~~~~C-~~C----------hPEC~TCnG~G~d~C~~CaHf~ 562 (1177)
T KOG1025|consen 518 CVEKCNL-LGGEPR-FVNSREC-ERC----------HPECETCNGPGADNCLQCAHFR 562 (1177)
T ss_pred ehhhccc-cCCccc-cccccee-ccc----------ChhhccCCCCCccchhhhhhcC
Confidence 3334443 334444 4556666 666 3468999999999999987754
No 149
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.56 E-value=83 Score=37.45 Aligned_cols=45 Identities=29% Similarity=0.681 Sum_probs=28.6
Q ss_pred cccCCCCCCcce-EeeeeccCcccccccCcceeeecCcccCCCCCCC------ceeeCCCCCCc
Q 040777 321 TTQCLTCRGEGR-LMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGL------GYTICDVCEGK 377 (380)
Q Consensus 321 ~~~C~~C~G~G~-~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~------G~~~C~~C~G~ 377 (380)
...|+.|..... ..|..|...-.. ...|+.|+.. |...|+.|+..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~------------vy~CPsCGaev~~des~a~~CP~CGtp 718 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEP------------VYVCPDCGAEVPPDESGRVECPRCDVE 718 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCC------------ceeCccCCCccCCCccccccCCCCCCc
Confidence 467999976543 578888665321 2368888763 23378888643
No 150
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=22.49 E-value=2.3e+02 Score=19.16 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 040777 64 EEQRWFREEQRWIRERESLLREISEL 89 (380)
Q Consensus 64 ~~~~~~~~~~r~~~~~~~~~~e~~~~ 89 (380)
||||-+.|-.-.++.|+.|...++.|
T Consensus 2 dEqkL~sekeqLrrr~eqLK~kLeql 27 (32)
T PF02344_consen 2 DEQKLISEKEQLRRRREQLKHKLEQL 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544444
No 151
>PTZ00368 universal minicircle sequence binding protein (UMSBP); Provisional
Probab=22.29 E-value=1.3e+02 Score=26.38 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=7.8
Q ss_pred ccCCCCCCCcee
Q 040777 358 MKCPYCEGLGYT 369 (380)
Q Consensus 358 ~~C~~C~G~G~~ 369 (380)
..|..|...|.+
T Consensus 104 ~~C~~Cg~~gH~ 115 (148)
T PTZ00368 104 RACYNCGGEGHI 115 (148)
T ss_pred hhhcccCcCCcc
Confidence 357777766666
No 152
>PLN03188 kinesin-12 family protein; Provisional
Probab=22.10 E-value=1.5e+02 Score=35.34 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=34.6
Q ss_pred CCCCChHhHHHHHHHHHHcCCCCCC---CCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhCCCc
Q 040777 165 RVGSEGEDVKAMQEELLKLGFFSGE---EDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYMEHRV 234 (380)
Q Consensus 165 k~G~~g~~V~~LQ~~L~~lGy~~g~---vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~~~~ 234 (380)
+..|+.++|.+.=..|.+|----.. ..-.| ...-+.+.+.|++-..|+-.=-.--.|+..+....+.
T Consensus 1188 qlrdtaeav~aagellvrl~eaeea~~~a~~r~---~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~aes~l 1257 (1320)
T PLN03188 1188 QLRDTAEAVQAAGELLVRLKEAEEALTVAQKRA---MDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAESRL 1257 (1320)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 4446777777776666655321100 11122 4455666777775555554443444566664433333
No 153
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=20.78 E-value=46 Score=26.89 Aligned_cols=17 Identities=18% Similarity=0.276 Sum_probs=6.7
Q ss_pred cccCCCCCCcceEeeee
Q 040777 321 TTQCLTCRGEGRLMCLE 337 (380)
Q Consensus 321 ~~~C~~C~G~G~~~C~~ 337 (380)
.-.|+.|+-...+.|..
T Consensus 22 ~F~CPfC~~~~sV~v~i 38 (81)
T PF05129_consen 22 VFDCPFCNHEKSVSVKI 38 (81)
T ss_dssp ----TTT--SS-EEEEE
T ss_pred eEcCCcCCCCCeEEEEE
Confidence 44688887666666654
No 154
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=20.72 E-value=70 Score=20.26 Aligned_cols=6 Identities=50% Similarity=1.674 Sum_probs=3.5
Q ss_pred ccCCCC
Q 040777 358 MKCPYC 363 (380)
Q Consensus 358 ~~C~~C 363 (380)
..||+|
T Consensus 17 f~CPnC 22 (24)
T PF07754_consen 17 FPCPNC 22 (24)
T ss_pred EeCCCC
Confidence 356666
No 155
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=20.43 E-value=50 Score=32.72 Aligned_cols=52 Identities=25% Similarity=0.417 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccc-c-ccCcceeeecCcccCCCCC
Q 040777 309 GNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEP-N-IEPQFIEWVDEGMKCPYCE 364 (380)
Q Consensus 309 ~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~-~-~~pg~~~~~~~~~~C~~C~ 364 (380)
.|+...+- ..+|..||-.|...|.+|+-.=-- . ..-||-...+...+||.|+
T Consensus 163 sCQvLe~E----~~KC~SCNrlGq~sCLRCK~cfCddHvrrKg~ky~k~k~~PCPKCg 216 (314)
T PF06524_consen 163 SCQVLESE----TFKCQSCNRLGQYSCLRCKICFCDDHVRRKGFKYEKGKPIPCPKCG 216 (314)
T ss_pred hhhhhhcc----cccccccccccchhhhheeeeehhhhhhhcccccccCCCCCCCCCC
Confidence 36655443 567999999999888887643110 0 0012222223467888885
No 156
>PRK11032 hypothetical protein; Provisional
Probab=20.37 E-value=70 Score=29.24 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=23.4
Q ss_pred ecc-cceeeeeccceeecccccccCCCCCCCCCCC-CCcccCCCCCCcceE
Q 040777 285 DLS-ERRVFLLGENRWEEPSRLAGRGNQDAGSKAK-KATTQCLTCRGEGRL 333 (380)
Q Consensus 285 ~ls-~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~-~~~~~C~~C~G~G~~ 333 (380)
.+| -|.+..+|.-. | .+|+..-.... .....|+.|++..+.
T Consensus 112 g~Y~sGEvvg~G~Lv-------C-~~Cg~~~~~~~p~~i~pCp~C~~~~F~ 154 (160)
T PRK11032 112 GVYHSGEVVGLGNLV-------C-EKCHHHLAFYTPEVLPLCPKCGHDQFQ 154 (160)
T ss_pred CeeecceeeecceEE-------e-cCCCCEEEecCCCcCCCCCCCCCCeee
Confidence 455 67777777766 5 77765433322 223456666665543
No 157
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=20.35 E-value=46 Score=34.81 Aligned_cols=13 Identities=46% Similarity=1.129 Sum_probs=10.3
Q ss_pred cccCCCCCCCcee
Q 040777 357 GMKCPYCEGLGYT 369 (380)
Q Consensus 357 ~~~C~~C~G~G~~ 369 (380)
..+||.|+|+|.+
T Consensus 390 ~~~Cp~C~G~G~v 402 (414)
T TIGR00757 390 GTVCPHCSGTGIV 402 (414)
T ss_pred cCCCCCCcCeeEE
Confidence 4578888888876
No 158
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=20.28 E-value=69 Score=22.11 Aligned_cols=7 Identities=57% Similarity=1.559 Sum_probs=5.2
Q ss_pred cCCCCCC
Q 040777 359 KCPYCEG 365 (380)
Q Consensus 359 ~C~~C~G 365 (380)
.|+.|+|
T Consensus 21 ~C~~C~G 27 (41)
T PF13453_consen 21 VCPSCGG 27 (41)
T ss_pred ECCCCCe
Confidence 5888876
No 159
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=20.28 E-value=43 Score=34.15 Aligned_cols=19 Identities=42% Similarity=1.116 Sum_probs=15.9
Q ss_pred cccCCCCCCCceeeCCCCCCce
Q 040777 357 GMKCPYCEGLGYTICDVCEGKA 378 (380)
Q Consensus 357 ~~~C~~C~G~G~~~C~~C~G~G 378 (380)
...|..|+|+| |..|++.|
T Consensus 260 dv~~~~~~g~g---c~~ck~~~ 278 (339)
T PRK00488 260 DVSCFKCGGKG---CRVCKGTG 278 (339)
T ss_pred EEEEeccCCCc---ccccCCCC
Confidence 45799999988 88998876
No 160
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=20.27 E-value=41 Score=25.51 Aligned_cols=10 Identities=40% Similarity=1.105 Sum_probs=5.6
Q ss_pred ccCCCCCCCc
Q 040777 358 MKCPYCEGLG 367 (380)
Q Consensus 358 ~~C~~C~G~G 367 (380)
..||.|.--.
T Consensus 25 ~KCPrCK~vN 34 (60)
T COG4416 25 KKCPRCKEVN 34 (60)
T ss_pred ecCCccceee
Confidence 4577665443
Done!