Query 040777
Match_columns 380
No_of_seqs 480 out of 2679
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040777.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040777hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bkh_A Phikz144, lytic transgl 99.4 1.3E-13 4.6E-18 132.1 8.8 69 161-232 9-77 (268)
2 1lbu_A Muramoyl-pentapeptide c 99.4 2E-13 6.7E-18 126.1 7.7 67 162-231 8-76 (213)
3 4fet_B Spore cortex-lytic enzy 99.4 2.2E-14 7.4E-19 134.4 0.0 69 161-232 4-72 (222)
4 2ctt_A DNAJ homolog subfamily 99.2 1.7E-11 5.9E-16 101.4 6.7 84 283-380 7-93 (104)
5 1nlt_A Protein YDJ1, mitochond 99.1 5.2E-11 1.8E-15 112.9 5.3 86 284-380 18-108 (248)
6 3d2y_A N-acetylmuramoyl-L-alan 98.9 9.9E-10 3.4E-14 104.9 6.2 59 166-229 193-252 (261)
7 1exk_A DNAJ protein; extended 98.8 4.3E-09 1.5E-13 82.3 4.8 60 307-380 14-76 (79)
8 1exk_A DNAJ protein; extended 97.3 0.00014 4.8E-09 56.3 3.7 23 358-380 29-62 (79)
9 1l6j_A Matrix metalloproteinas 97.2 0.00033 1.1E-08 71.1 5.7 57 172-231 22-78 (425)
10 1eak_A 72 kDa type IV collagen 97.1 0.00063 2.1E-08 69.0 7.0 54 172-231 15-69 (421)
11 1slm_A Stromelysin-1; hydrolas 97.1 0.00048 1.6E-08 65.3 5.8 60 172-231 13-73 (255)
12 3lcz_A YCZA, inhibitor of trap 96.9 0.00024 8.1E-09 52.0 1.3 24 357-380 9-35 (53)
13 2ctt_A DNAJ homolog subfamily 96.7 0.00088 3E-08 54.8 3.5 11 370-380 69-79 (104)
14 1su3_A Interstitial collagenas 96.6 0.002 6.7E-08 65.8 5.4 63 169-231 8-71 (450)
15 1ck7_A Protein (gelatinase A); 96.5 0.0026 8.9E-08 67.5 6.4 53 172-230 17-70 (631)
16 2bx9_A Anti-trap, AT, tryptoph 96.2 0.002 6.8E-08 47.1 2.1 11 359-369 25-35 (53)
17 1nlt_A Protein YDJ1, mitochond 96.0 0.003 1E-07 59.4 3.0 11 370-380 82-92 (248)
18 2ikb_A Hypothetical protein NM 95.8 0.0072 2.5E-07 53.9 4.3 31 200-230 89-119 (167)
19 2nr7_A Secretion activator pro 95.2 0.012 4.2E-07 53.7 3.8 29 202-230 103-131 (195)
20 3lcz_A YCZA, inhibitor of trap 94.0 0.018 6.2E-07 41.9 1.5 22 323-344 11-35 (53)
21 2bx9_A Anti-trap, AT, tryptoph 93.8 0.022 7.5E-07 41.5 1.6 22 323-344 11-35 (53)
22 3pmq_A Decaheme cytochrome C M 91.9 0.0052 1.8E-07 65.6 -5.8 48 283-330 170-220 (669)
23 1lbu_A Muramoyl-pentapeptide c 68.5 1.1 3.7E-05 40.5 0.1 51 177-230 120-174 (213)
24 3ra3_B P2F; coiled coil domain 66.8 8.2 0.00028 23.7 3.8 22 77-98 7-28 (28)
25 1a93_A Coiled coil, LZ, MYC pr 55.7 16 0.00054 24.1 3.9 27 70-96 7-33 (34)
26 4dzn_A Coiled-coil peptide CC- 46.6 21 0.00072 22.7 3.2 18 79-96 11-28 (33)
27 2ikb_A Hypothetical protein NM 45.8 12 0.0004 33.0 2.8 30 170-208 91-120 (167)
28 2nr7_A Secretion activator pro 41.5 20 0.00068 32.5 3.7 29 170-207 103-131 (195)
29 1pft_A TFIIB, PFTFIIBN; N-term 36.4 15 0.00052 25.4 1.6 6 369-374 25-30 (50)
30 4ath_A MITF, microphthalmia-as 35.8 65 0.0022 25.3 5.3 37 60-99 42-78 (83)
31 1qo8_A Flavocytochrome C3 fuma 28.5 7.5 0.00026 39.7 -1.6 22 357-378 62-86 (566)
32 3nyb_B Protein AIR2; polya RNA 27.1 29 0.00098 27.0 1.9 17 357-373 46-64 (83)
33 1dl6_A Transcription factor II 26.9 31 0.0011 24.9 2.0 7 323-329 13-19 (58)
34 2vf7_A UVRA2, excinuclease ABC 23.6 25 0.00084 38.5 1.3 11 357-367 661-671 (842)
35 3pmq_A Decaheme cytochrome C M 23.2 23 0.00079 37.8 0.9 57 319-377 189-280 (669)
36 2k0a_A PRE-mRNA-splicing facto 22.0 24 0.00083 28.9 0.6 13 357-369 57-70 (109)
37 3ra3_A P1C; coiled coil domain 20.8 1.2E+02 0.0041 18.5 3.4 20 78-97 8-27 (28)
38 1nkp_A C-MYC, MYC proto-oncoge 20.3 1.3E+02 0.0043 23.4 4.5 27 72-98 61-87 (88)
39 1pd3_A Nonstructural protein N 20.2 47 0.0016 24.0 1.8 19 56-74 8-26 (58)
40 2vf7_A UVRA2, excinuclease ABC 20.2 45 0.0016 36.4 2.5 22 358-379 639-672 (842)
No 1
>3bkh_A Phikz144, lytic transglycosylase; bacteriophage, endolysin, peptidoglycan, cell WALL degradation, lysozyme, hydrolase; 2.50A {Pseudomonas phage phikz} PDB: 3bkv_A*
Probab=99.44 E-value=1.3e-13 Score=132.14 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=65.5
Q ss_pred CCccCCCCChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhCC
Q 040777 161 RKALRVGSEGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYMEH 232 (380)
Q Consensus 161 ~~~Lk~G~~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~~ 232 (380)
.++|+.|+++.+|..||++|..+||+.+.+||+| |+.|++||++||+++||++||+||+.||.+|+...
T Consensus 9 ~~~l~~G~~g~~V~~lQ~~L~~~Gy~~g~~DG~f---g~~T~~AV~~FQ~~~gL~~dGivg~~T~~~L~~~~ 77 (268)
T 3bkh_A 9 MKVLRKGDRGDEVCQLQTLLNLCGYDVGKPDGIF---GNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKY 77 (268)
T ss_dssp SCCBCTTCBSHHHHHHHHHHHTTTCCCCSCCSBC---CHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHHC
T ss_pred cccCcCCCchHHHHHHHHHHHHcCCCCCCCCCcc---CHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhh
Confidence 4679999999999999999999999999999998 99999999999999999999999999999998543
No 2
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=99.42 E-value=2e-13 Score=126.08 Aligned_cols=67 Identities=27% Similarity=0.366 Sum_probs=62.8
Q ss_pred CccCCCCChHhHHHHHHHHHHcCCCC--CCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhC
Q 040777 162 KALRVGSEGEDVKAMQEELLKLGFFS--GEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYME 231 (380)
Q Consensus 162 ~~Lk~G~~g~~V~~LQ~~L~~lGy~~--g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~ 231 (380)
+.|++|+++++|+.||++|+.+||+. +.+||+| |+.|++||++||+++||++||++|+.||.+|+..
T Consensus 8 ~~l~~G~~g~~V~~lQ~~L~~~~~~~~~~~~dG~f---g~~t~~AV~~FQ~~~gL~~dG~vg~~T~~~L~~~ 76 (213)
T 1lbu_A 8 GTLSEGSSGEAVRQLQIRVAGYPGTGAQLAIDGQF---GPATKAAVQRFQSAYGLAADGIAGPATFNKIYQL 76 (213)
T ss_dssp SCBCTTCBSHHHHHHHHHTTTCSCTTCCCCCSSBC---CHHHHHHHHHHHHHTTSCCSSCBCHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHHhcCCcCCCCCCCCCc---CHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Confidence 47999999999999999999999874 6899998 9999999999999999999999999999999854
No 3
>4fet_B Spore cortex-lytic enzyme prepeptide; transglycosylase, cortex hydrolase domain, sodium ION, seMet hydrolase; 1.91A {Bacillus anthracis}
Probab=99.40 E-value=2.2e-14 Score=134.40 Aligned_cols=69 Identities=28% Similarity=0.473 Sum_probs=0.0
Q ss_pred CCccCCCCChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhCC
Q 040777 161 RKALRVGSEGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYMEH 232 (380)
Q Consensus 161 ~~~Lk~G~~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~~ 232 (380)
.++|++|++|.+|+.||++|+.+||+.+.+||+| |+.|++||++||+++||++||++|+.||.+|+...
T Consensus 4 ~~~L~~G~~g~~V~~lQ~~L~~lGy~~g~~DG~f---G~~T~~AV~~FQ~~~GL~~DGivg~~T~~aL~~~~ 72 (222)
T 4fet_B 4 NQVIQRGASGEDVIELQSRLKYNGFYTGKVDGVF---GWGTYWALRNFQEKFGLPVDGLAGAKTKQMLVKAT 72 (222)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CCcccCCCCcHHHHHHHHHHHHcCCCCCCCCCCc---CHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHhcc
Confidence 4689999999999999999999999999999998 99999999999999999999999999999998543
No 4
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=1.7e-11 Score=101.39 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=64.9
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCC
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPY 362 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~ 362 (380)
.++|++..+|++.+..+..+....|..|+|+|++.+....+|+.|+|+|++.... |+++. +.+|+.
T Consensus 7 ~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~-----------G~~~~---~~~C~~ 72 (104)
T 2ctt_A 7 GMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINT-----------GPFVM---RSTCRR 72 (104)
T ss_dssp CCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEE-----------TTEEE---EEECSS
T ss_pred EEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEe-----------CCEEE---EEECCc
Confidence 4566666666666666666655566999999999887788999999999876654 23332 468999
Q ss_pred CCCCcee---eCCCCCCceeC
Q 040777 363 CEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 363 C~G~G~~---~C~~C~G~G~v 380 (380)
|+|.|++ +|+.|+|.|++
T Consensus 73 C~G~G~~i~~~C~~C~G~G~v 93 (104)
T 2ctt_A 73 CGGRGSIIISPCVVCRGAGQA 93 (104)
T ss_dssp SSSSSEECSSCCSSSSSCSEE
T ss_pred CCCcceECCCcCCCCCCeeEE
Confidence 9999999 89999999874
No 5
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=99.09 E-value=5.2e-11 Score=112.87 Aligned_cols=86 Identities=21% Similarity=0.483 Sum_probs=65.5
Q ss_pred eecccceeeeeccceeecccccccCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCC
Q 040777 284 VDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYC 363 (380)
Q Consensus 284 ~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C 363 (380)
+.+++..+|++.+..+..+....|..|+|+|++.+. ..+|+.|+|+|++...+ ++++ |++++ +.+|+.|
T Consensus 18 l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~-------~~g~-~~~~~--~~~C~~C 86 (248)
T 1nlt_A 18 ISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTR-------QMGP-MIQRF--QTECDVC 86 (248)
T ss_dssp EEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEE-------ESSS-EEEEE--ECSCTTC
T ss_pred EEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEE-------ecCc-eEEEE--EEcCCCC
Confidence 445555555555555554444444999999999877 58999999999988777 5556 66555 7899999
Q ss_pred CCCcee-----eCCCCCCceeC
Q 040777 364 EGLGYT-----ICDVCEGKAVV 380 (380)
Q Consensus 364 ~G~G~~-----~C~~C~G~G~v 380 (380)
+|+|++ .|+.|+|.|++
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~ 108 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVE 108 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEE
T ss_pred CCcCEEeccCCCCcccCCCceE
Confidence 999976 79999999864
No 6
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=98.91 E-value=9.9e-10 Score=104.92 Aligned_cols=59 Identities=14% Similarity=0.096 Sum_probs=56.1
Q ss_pred CCCChHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHc-CCCCCCccCHHHHHHHh
Q 040777 166 VGSEGEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAM-GVTEDGIMTSELLESLY 229 (380)
Q Consensus 166 ~G~~g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~-GL~~DGivg~~T~~~L~ 229 (380)
.++.+.+|..||++|+.+||+. +||.| |..|++||++||+++ +|.+||++|++|+..|.
T Consensus 193 ~~~~g~~v~~lq~~L~~~GY~~--~dg~~---~~~t~~aV~aFQ~~~r~l~~dGi~d~~T~~~L~ 252 (261)
T 3d2y_A 193 APHTPVDTASLLELLARYGYDV--KPDMT---PREQRRVIMAFQMHFRPTLYNGEADAETQAIAE 252 (261)
T ss_dssp CTTCBCCHHHHHHHHHHHTCCC--CSSCC---HHHHHHHHHHHHHHHCTTCCSCCCBHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCC--CCCcc---CHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence 4778899999999999999998 89998 999999999999999 99999999999999997
No 7
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=98.79 E-value=4.3e-09 Score=82.27 Aligned_cols=60 Identities=28% Similarity=0.634 Sum_probs=45.1
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCcceEeeeeccCcccccccCcceeeecCcccCCCCCCCcee---eCCCCCCceeC
Q 040777 307 GRGNQDAGSKAKKATTQCLTCRGEGRLMCLECDGTGEPNIEPQFIEWVDEGMKCPYCEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 307 ~~~c~G~G~~~~~~~~~C~~C~G~G~~~C~~C~GsG~~~~~pg~~~~~~~~~~C~~C~G~G~~---~C~~C~G~G~v 380 (380)
|..|+|+|.........|+.|+|.|.+...+ ++++. ..+|+.|+|.|++ +|+.|+|.|++
T Consensus 14 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-----------g~~~~---~~~C~~C~G~G~~~~~~C~~C~G~G~~ 76 (79)
T 1exk_A 14 CDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQ-----------GFFAV---QQTCPHCQGRGTLIKDPCNKCHGHGRV 76 (79)
T ss_dssp CGGGTTTSBCSSSCCEECTTTTTSSEEEEEE-----------TTEEE---EEECTTTTTSSEECSSBCGGGTTSSEE
T ss_pred CCCCcccccCCCccCCCCCCCcCeEEEEEEc-----------CCCEE---eeECcCCCCccEECCCcCCCCCCeEEE
Confidence 3888888876655556788888877765533 34432 4689999999999 99999999874
No 8
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=97.32 E-value=0.00014 Score=56.33 Aligned_cols=23 Identities=35% Similarity=1.022 Sum_probs=18.5
Q ss_pred ccCCCCCCCcee-----------eCCCCCCceeC
Q 040777 358 MKCPYCEGLGYT-----------ICDVCEGKAVV 380 (380)
Q Consensus 358 ~~C~~C~G~G~~-----------~C~~C~G~G~v 380 (380)
.+|+.|+|.|.+ .|+.|+|.|.+
T Consensus 29 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~ 62 (79)
T 1exk_A 29 QTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL 62 (79)
T ss_dssp EECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE
T ss_pred CCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE
Confidence 468888888854 79999999864
No 9
>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2
Probab=97.19 E-value=0.00033 Score=71.13 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhC
Q 040777 172 DVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYME 231 (380)
Q Consensus 172 ~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~ 231 (380)
++..+|.+|.+.||........+ +..++.||+.||+.+||+++|++|.+|+..|...
T Consensus 22 ~~~~a~~yL~~yGYl~~~~~~~~---~~~l~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~P 78 (425)
T 1l6j_A 22 DRQLAEEYLYRYGYTRVAEMRGE---SKSLGPALLLLQKQLSLPETGELDSATLKAMRTP 78 (425)
T ss_dssp HHHHHHHHHHHTTCC--------------CHHHHHHHHHHHTCCCCSSCCHHHHHHHTSC
T ss_pred cHHHHHHHHHHcCCCCCcccccc---hHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCC
Confidence 46677999999999874322233 7889999999999999999999999999999843
No 10
>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A
Probab=97.13 E-value=0.00063 Score=68.98 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=47.0
Q ss_pred hHHHHHHHHHH-cCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhC
Q 040777 172 DVKAMQEELLK-LGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYME 231 (380)
Q Consensus 172 ~V~~LQ~~L~~-lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~ 231 (380)
++..+|.+|.+ .||.... + + +..++.||+.||+.+||+++|++|.+|+..|...
T Consensus 15 ~~~~a~~yL~~~yGyl~~~-~--~---~~~~~~Ai~~~Q~f~gL~vTG~LD~~T~~~M~~P 69 (421)
T 1eak_A 15 DKELAVQYLNTFYGCPKES-C--N---LFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRKP 69 (421)
T ss_dssp HHHHHHHHHHHHTCCCSSC-C--C---HHHHHHHHHHHHHHSSCCCCCSCCHHHHHHHTSC
T ss_pred cHHHHHHHHHHhcCCCCCC-C--c---hHHHHHHHHHHHHHcCCCCCCccCHHHHHHhcCC
Confidence 46677999999 9998743 2 4 8899999999999999999999999999999843
No 11
>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11
Probab=97.12 E-value=0.00048 Score=65.31 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHcCCCCCCCCCcc-cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhC
Q 040777 172 DVKAMQEELLKLGFFSGEEDMEY-SSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYME 231 (380)
Q Consensus 172 ~V~~LQ~~L~~lGy~~g~vDG~f-~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~ 231 (380)
++..+|.+|.+.||......... ..++..++.||+.||+.+||+++|++|..|+..|...
T Consensus 13 ~~~~~~~yL~~~gyl~~~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~p 73 (255)
T 1slm_A 13 SMNLVQKYLENYYDLKKDVKQFVRRKDSGPVVKKIREMQKFLGLEVTGKLDSDTLEVMRKP 73 (255)
T ss_dssp ---CHHHHHHHHSCCCCC---------CHHHHHHHHHHHHHTTCCCCSSCCHHHHHHTTSC
T ss_pred hHHHHHHHHHHcCCCCCcccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcCC
Confidence 37889999999999874322110 0148899999999999999999999999999999743
No 12
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=96.93 E-value=0.00024 Score=52.03 Aligned_cols=24 Identities=42% Similarity=0.971 Sum_probs=19.8
Q ss_pred cccCCCCCCCcee---eCCCCCCceeC
Q 040777 357 GMKCPYCEGLGYT---ICDVCEGKAVV 380 (380)
Q Consensus 357 ~~~C~~C~G~G~~---~C~~C~G~G~v 380 (380)
+.+|+.|+|+|++ +|+.|+|.|++
T Consensus 9 ~~~C~~C~GsG~~i~~~C~~C~G~G~v 35 (53)
T 3lcz_A 9 ETTCPNCNGSGREEPEPCPKCLGKGVI 35 (53)
T ss_dssp EEECTTTTTSCEETTEECTTTTTSSEE
T ss_pred eccCcCCcccccCCCCcCCCCCCcEEE
Confidence 5679999999987 89999988864
No 13
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.74 E-value=0.00088 Score=54.79 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=9.7
Q ss_pred eCCCCCCceeC
Q 040777 370 ICDVCEGKAVV 380 (380)
Q Consensus 370 ~C~~C~G~G~v 380 (380)
.|+.|+|.|.+
T Consensus 69 ~C~~C~G~G~~ 79 (104)
T 2ctt_A 69 TCRRCGGRGSI 79 (104)
T ss_dssp ECSSSSSSSEE
T ss_pred ECCcCCCcceE
Confidence 89999999863
No 14
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=96.56 E-value=0.002 Score=65.75 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=44.1
Q ss_pred ChHhHHHHHHHHHHcCCCCCCCCCcc-cCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhhC
Q 040777 169 EGEDVKAMQEELLKLGFFSGEEDMEY-SSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYME 231 (380)
Q Consensus 169 ~g~~V~~LQ~~L~~lGy~~g~vDG~f-~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~~ 231 (380)
...++..+|.+|.+.||......+.. ..++..++.||+.||+.+||+++|++|..|+..|...
T Consensus 8 ~~~~~~~~~~yL~~~gyl~~~~~~~~~~~~~~~~~~ai~~~Q~~~~l~~tG~ld~~t~~~m~~p 71 (450)
T 1su3_A 8 QEQDVDLVQKYLEKYYNLKNDGRQVEKRRNSGPVVEKLKQMQEFFGLKVTGKPDAETLKVMKQP 71 (450)
T ss_dssp -----CHHHHHHHHHSCCC------------CHHHHHHHHHHHHTTCCCCSSCCHHHHHHHTSC
T ss_pred chhhHHHHHHHHHHhCCCCCcccccccccchHHHHHHHHHHHHHcCCCCccccCHHHHHHhcCC
Confidence 34567889999999999874322210 0137789999999999999999999999999999844
No 15
>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A
Probab=96.55 E-value=0.0026 Score=67.55 Aligned_cols=53 Identities=15% Similarity=0.123 Sum_probs=46.7
Q ss_pred hHHHHHHHHHH-cCCCCCCCCCcccCCCHHHHHHHHHHHHHcCCCCCCccCHHHHHHHhh
Q 040777 172 DVKAMQEELLK-LGFFSGEEDMEYSSFSTGTERAVKTWQAAMGVTEDGIMTSELLESLYM 230 (380)
Q Consensus 172 ~V~~LQ~~L~~-lGy~~g~vDG~f~~Fg~~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~ 230 (380)
++..+|..|.+ .||.... + . +..++.||+.||+.+||+++|++|.+|++.|..
T Consensus 17 ~~~~~~~yL~~~ygyl~~~-~--~---~~~~~~al~~~Q~~~gL~~TG~lD~~T~~~m~~ 70 (631)
T 1ck7_A 17 DKELAVQYLNTFYGCPKES-C--N---LFVLKDTLKKMQKFFGLPQTGDLDQNTIETMRK 70 (631)
T ss_dssp HHHHHHHHHHHHTCCCTTT-C--S---HHHHHHHHHHHHHHHTCCSCSSCCHHHHHHTTS
T ss_pred cHHHHHHHHHHhcCCCCCC-C--c---hHHHHHHHHHHHHHcCCCCccccCHHHHHHhcC
Confidence 46778999999 9998733 2 4 789999999999999999999999999999984
No 16
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=96.17 E-value=0.002 Score=47.07 Aligned_cols=11 Identities=45% Similarity=1.132 Sum_probs=5.4
Q ss_pred cCCCCCCCcee
Q 040777 359 KCPYCEGLGYT 369 (380)
Q Consensus 359 ~C~~C~G~G~~ 369 (380)
+|+.|+|.|.+
T Consensus 25 ~C~~C~G~G~v 35 (53)
T 2bx9_A 25 PCPACSGKGVI 35 (53)
T ss_dssp ECTTTTTSSEE
T ss_pred CCccCCCCccE
Confidence 35555555543
No 17
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1
Probab=96.01 E-value=0.003 Score=59.43 Aligned_cols=11 Identities=45% Similarity=1.096 Sum_probs=9.7
Q ss_pred eCCCCCCceeC
Q 040777 370 ICDVCEGKAVV 380 (380)
Q Consensus 370 ~C~~C~G~G~v 380 (380)
.|+.|+|.|.+
T Consensus 82 ~C~~C~G~G~~ 92 (248)
T 1nlt_A 82 ECDVCHGTGDI 92 (248)
T ss_dssp SCTTCSSSSSC
T ss_pred cCCCCCCcCEE
Confidence 89999999864
No 18
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=95.78 E-value=0.0072 Score=53.93 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCCCCCccCHHHHHHHhh
Q 040777 200 GTERAVKTWQAAMGVTEDGIMTSELLESLYM 230 (380)
Q Consensus 200 ~T~~AVk~FQ~~~GL~~DGivg~~T~~~L~~ 230 (380)
....||+.||+.+||.+||+||+.|+.+|+.
T Consensus 89 G~~~Avk~lQ~~lgl~~DGiiGp~Tl~al~~ 119 (167)
T 2ikb_A 89 GYGNAARMLQRAAGVPDDGVIGAVSLKAINS 119 (167)
T ss_dssp CHHHHHHHHHHHTTSCCSSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCcCCCcCHHHHHHHHh
Confidence 4678999999999999999999999999984
No 19
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=95.20 E-value=0.012 Score=53.74 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=27.7
Q ss_pred HHHHHHHHHHcCCCCCCccCHHHHHHHhh
Q 040777 202 ERAVKTWQAAMGVTEDGIMTSELLESLYM 230 (380)
Q Consensus 202 ~~AVk~FQ~~~GL~~DGivg~~T~~~L~~ 230 (380)
..||+.||+.+||.+||+||+.|+.+|+.
T Consensus 103 ~~Avk~LQr~lgl~~DGiiGp~TlaAl~~ 131 (195)
T 2nr7_A 103 KYGIVIPQRILGVQADGIVGNKTLQAVNS 131 (195)
T ss_dssp THHHHHHHHHHTSCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCCCcCHHHHHHHHc
Confidence 68999999999999999999999999995
No 20
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=94.03 E-value=0.018 Score=41.93 Aligned_cols=22 Identities=41% Similarity=0.925 Sum_probs=11.0
Q ss_pred cCCCCCCcce---EeeeeccCcccc
Q 040777 323 QCLTCRGEGR---LMCLECDGTGEP 344 (380)
Q Consensus 323 ~C~~C~G~G~---~~C~~C~GsG~~ 344 (380)
.|+.|+|+|. ..|..|+|.|.+
T Consensus 11 ~C~~C~GsG~~i~~~C~~C~G~G~v 35 (53)
T 3lcz_A 11 TCPNCNGSGREEPEPCPKCLGKGVI 35 (53)
T ss_dssp ECTTTTTSCEETTEECTTTTTSSEE
T ss_pred cCcCCcccccCCCCcCCCCCCcEEE
Confidence 4555555554 234444444443
No 21
>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*
Probab=93.76 E-value=0.022 Score=41.49 Aligned_cols=22 Identities=32% Similarity=0.807 Sum_probs=10.7
Q ss_pred cCCCCCCcce---EeeeeccCcccc
Q 040777 323 QCLTCRGEGR---LMCLECDGTGEP 344 (380)
Q Consensus 323 ~C~~C~G~G~---~~C~~C~GsG~~ 344 (380)
.|+.|+|+|. ..|..|+|+|.+
T Consensus 11 ~C~~C~GsG~~~~~~C~~C~G~G~v 35 (53)
T 2bx9_A 11 ACPKCERAGEIEGTPCPACSGKGVI 35 (53)
T ss_dssp ECTTTTTSSEETTEECTTTTTSSEE
T ss_pred cCCCCcceeccCCCCCccCCCCccE
Confidence 3455555543 245555555544
No 22
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=91.92 E-value=0.0052 Score=65.61 Aligned_cols=48 Identities=8% Similarity=-0.046 Sum_probs=36.8
Q ss_pred ceecccceeeeeccceeecccccccCCCCCCCCCCCC---CcccCCCCCCc
Q 040777 283 EVDLSERRVFLLGENRWEEPSRLAGRGNQDAGSKAKK---ATTQCLTCRGE 330 (380)
Q Consensus 283 ~~~ls~~rv~~l~e~rwe~p~~l~~~~c~G~G~~~~~---~~~~C~~C~G~ 330 (380)
.+.++....+.+.+.....++..-|..|+|+|++++. ...+|+.|+|.
T Consensus 170 ~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs 220 (669)
T 3pmq_A 170 NQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNS 220 (669)
T ss_dssp CCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSST
T ss_pred EEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCC
Confidence 3455555556666666666777777999999999887 67899999998
No 23
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=68.49 E-value=1.1 Score=40.47 Aligned_cols=51 Identities=14% Similarity=-0.031 Sum_probs=38.1
Q ss_pred HHHHHHcCCCCCCCCCcccCCCH-HHHHHH---HHHHHHcCCCCCCccCHHHHHHHhh
Q 040777 177 QEELLKLGFFSGEEDMEYSSFST-GTERAV---KTWQAAMGVTEDGIMTSELLESLYM 230 (380)
Q Consensus 177 Q~~L~~lGy~~g~vDG~f~~Fg~-~T~~AV---k~FQ~~~GL~~DGivg~~T~~~L~~ 230 (380)
+.....+|+....+++.| .. .+-++| +.||..+|+.+|++|+..+|.+|..
T Consensus 120 e~lr~~~g~~~i~V~sgy---R~~~~N~~vgg~~~s~H~~G~A~D~~v~~~~~~~l~~ 174 (213)
T 1lbu_A 120 QAMRHAMGDKPITVNGGF---RSVTCNSNVGGASNSRHMYGHAADLGAGSQGFCALAQ 174 (213)
T ss_dssp HHHHHHTTSCCCCEEECC---CCHHHHHHHTCCTTCGGGGTCEEEECCTTTCHHHHHH
T ss_pred HHHHHhcCCCCeEecccc---CCHHHccccCCCCCCCCCCceEeeeCCCCcCHHHHHH
Confidence 333346785455677666 65 555666 8999999999999999999998873
No 24
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=66.77 E-value=8.2 Score=23.72 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 040777 77 RERESLLREISELKLQIKALEN 98 (380)
Q Consensus 77 ~~~~~~~~e~~~~~~~~~~~~~ 98 (380)
..-.+|..||++|.-+|.+||+
T Consensus 7 qknarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhHHHHHHHHHHHHHHHhcC
Confidence 3456788899999999998874
No 25
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=55.75 E-value=16 Score=24.12 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=22.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040777 70 REEQRWIRERESLLREISELKLQIKAL 96 (380)
Q Consensus 70 ~~~~r~~~~~~~~~~e~~~~~~~~~~~ 96 (380)
.+|++-+.|.+.+.....-|+..|+.|
T Consensus 7 ~dE~kLl~ekE~l~~r~eqL~~kLe~L 33 (34)
T 1a93_A 7 AEEQKLISEEDLLRKRREQLKHKLEQL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367888888888888888888888765
No 26
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=46.60 E-value=21 Score=22.68 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040777 79 RESLLREISELKLQIKAL 96 (380)
Q Consensus 79 ~~~~~~e~~~~~~~~~~~ 96 (380)
-..|..|+++|+.+|.+|
T Consensus 11 iaalkkeiaalkfeiaal 28 (33)
T 4dzn_A 11 IAALKKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 27
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.2.1.9 PDB: 2is5_A*
Probab=45.82 E-value=12 Score=32.99 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=24.9
Q ss_pred hHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHHH
Q 040777 170 GEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKTW 208 (380)
Q Consensus 170 g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~F 208 (380)
+..|+.||+.| | -.+||++ |+.|.+|++.+
T Consensus 91 ~~Avk~lQ~~l---g---l~~DGii---Gp~Tl~al~~~ 120 (167)
T 2ikb_A 91 GNAARMLQRAA---G---VPDDGVI---GAVSLKAINSL 120 (167)
T ss_dssp HHHHHHHHHHT---T---SCCSSCC---CHHHHHHHHHS
T ss_pred HHHHHHHHHHc---C---CCcCCCc---CHHHHHHHHhc
Confidence 34789999888 3 3589999 99999999976
No 28
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=41.55 E-value=20 Score=32.45 Aligned_cols=29 Identities=21% Similarity=-0.004 Sum_probs=25.3
Q ss_pred hHhHHHHHHHHHHcCCCCCCCCCcccCCCHHHHHHHHH
Q 040777 170 GEDVKAMQEELLKLGFFSGEEDMEYSSFSTGTERAVKT 207 (380)
Q Consensus 170 g~~V~~LQ~~L~~lGy~~g~vDG~f~~Fg~~T~~AVk~ 207 (380)
+..|+.||+.|. -.+||++ |+.|.+|++.
T Consensus 103 ~~Avk~LQr~lg------l~~DGii---Gp~TlaAl~~ 131 (195)
T 2nr7_A 103 KYGIVIPQRILG------VQADGIV---GNKTLQAVNS 131 (195)
T ss_dssp THHHHHHHHHHT------SCCCSCC---CHHHHHHHHH
T ss_pred HHHHHHHHHHhC------CCcCCCc---CHHHHHHHHc
Confidence 678999999985 3689999 9999999996
No 29
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.39 E-value=15 Score=25.37 Aligned_cols=6 Identities=33% Similarity=1.304 Sum_probs=2.7
Q ss_pred eeCCCC
Q 040777 369 TICDVC 374 (380)
Q Consensus 369 ~~C~~C 374 (380)
..|..|
T Consensus 25 lvC~~C 30 (50)
T 1pft_A 25 IVCAKC 30 (50)
T ss_dssp EEESSS
T ss_pred EECccc
Confidence 344444
No 30
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=35.77 E-value=65 Score=25.26 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcc
Q 040777 60 RWLREEQRWFREEQRWIRERESLLREISELKLQIKALENR 99 (380)
Q Consensus 60 ~~~~~~~~~~~~~~r~~~~~~~~~~e~~~~~~~~~~~~~~ 99 (380)
+||+.|+-=++||.. ...+|...-..|.++|++||-.
T Consensus 42 ~~Lq~e~~r~~e~e~---r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 42 RKLQREQQRAKDLEN---RQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHhhhhhHHHHHHHHHHHHH
Confidence 345554444444432 1445566666899999999863
No 31
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=28.46 E-value=7.5 Score=39.69 Aligned_cols=22 Identities=18% Similarity=0.532 Sum_probs=15.0
Q ss_pred cccCCCCCCCcee---eCCCCCCce
Q 040777 357 GMKCPYCEGLGYT---ICDVCEGKA 378 (380)
Q Consensus 357 ~~~C~~C~G~G~~---~C~~C~G~G 378 (380)
...|..|+.-... .|..|+...
T Consensus 62 ~~~C~~CH~~h~~~~~~c~~ch~~~ 86 (566)
T 1qo8_A 62 DINCTSCHKGHEEPKFYCNECHSFD 86 (566)
T ss_dssp SCCGGGTSCSSSCCCCGGGGTCCCC
T ss_pred CCCchhhCcCCcCcCchhhhhcCCC
Confidence 4578888865443 788887643
No 32
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=27.11 E-value=29 Score=27.04 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=13.4
Q ss_pred cccCCCCCCCcee--eCCC
Q 040777 357 GMKCPYCEGLGYT--ICDV 373 (380)
Q Consensus 357 ~~~C~~C~G~G~~--~C~~ 373 (380)
...|..|+..|.+ -|+.
T Consensus 46 ~~~CYnCG~~GH~~rdC~~ 64 (83)
T 3nyb_B 46 TIYCYNCGGKGHFGDDCKE 64 (83)
T ss_dssp CCBCSSSSCBSSCGGGCSS
T ss_pred CCeecccCCCCcCcccCCc
Confidence 4579999999988 6654
No 33
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=26.94 E-value=31 Score=24.89 Aligned_cols=7 Identities=14% Similarity=0.363 Sum_probs=3.7
Q ss_pred cCCCCCC
Q 040777 323 QCLTCRG 329 (380)
Q Consensus 323 ~C~~C~G 329 (380)
.|+.|.+
T Consensus 13 ~Cp~C~~ 19 (58)
T 1dl6_A 13 TCPNHPD 19 (58)
T ss_dssp SBTTBSS
T ss_pred cCcCCCC
Confidence 4555544
No 34
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=23.61 E-value=25 Score=38.46 Aligned_cols=11 Identities=36% Similarity=0.875 Sum_probs=6.6
Q ss_pred cccCCCCCCCc
Q 040777 357 GMKCPYCEGLG 367 (380)
Q Consensus 357 ~~~C~~C~G~G 367 (380)
...|+.|+|+.
T Consensus 661 ~~~c~~c~G~r 671 (842)
T 2vf7_A 661 YAPCPVCHGTR 671 (842)
T ss_dssp EEECTTTTTCC
T ss_pred ceecccccCcc
Confidence 34577776654
No 35
>3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis}
Probab=23.20 E-value=23 Score=37.76 Aligned_cols=57 Identities=14% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCcccCCCCCCcce---------EeeeeccCccccc-cc-----------CcceeeecCcccCCCCCCCce---------
Q 040777 319 KATTQCLTCRGEGR---------LMCLECDGTGEPN-IE-----------PQFIEWVDEGMKCPYCEGLGY--------- 368 (380)
Q Consensus 319 ~~~~~C~~C~G~G~---------~~C~~C~GsG~~~-~~-----------pg~~~~~~~~~~C~~C~G~G~--------- 368 (380)
.....|..|+|.|. ..|..|+|+.... .. .|.+.+. ...|..|+..+.
T Consensus 189 ~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~--~~~C~~CH~~~~~la~~~~w~ 266 (669)
T 3pmq_A 189 VSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQS--ISNCQTCHADNPDLADRQNWY 266 (669)
T ss_dssp CCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSC--TTCCTTTSCCCTTCCSCSCTT
T ss_pred ccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCc--cCcchhhcCCccccccccccc
Confidence 44567999998872 5799999994210 00 0111111 457999998885
Q ss_pred -e----eCCCCCCc
Q 040777 369 -T----ICDVCEGK 377 (380)
Q Consensus 369 -~----~C~~C~G~ 377 (380)
. .|..|+..
T Consensus 267 ~~ps~~aC~sCH~~ 280 (669)
T 3pmq_A 267 RVPTMEACGACHTQ 280 (669)
T ss_dssp TCCCHHHHHHHCCS
T ss_pred cCCchhhhhhccCC
Confidence 1 78888754
No 36
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.95 E-value=24 Score=28.92 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=7.9
Q ss_pred cccCCCCC-CCcee
Q 040777 357 GMKCPYCE-GLGYT 369 (380)
Q Consensus 357 ~~~C~~C~-G~G~~ 369 (380)
+.+|.-|+ |.|..
T Consensus 57 ~~rCIiCg~~~g~~ 70 (109)
T 2k0a_A 57 AKNCIICNLNVGVN 70 (109)
T ss_dssp TSBCTTTSSSBCCE
T ss_pred CCceEEcCCCCCcc
Confidence 34577776 66655
No 37
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.79 E-value=1.2e+02 Score=18.55 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 040777 78 ERESLLREISELKLQIKALE 97 (380)
Q Consensus 78 ~~~~~~~e~~~~~~~~~~~~ 97 (380)
|-..|...|++|+..|.+|.
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 45667777888888887764
No 38
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=20.31 E-value=1.3e+02 Score=23.39 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=19.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 040777 72 EQRWIRERESLLREISELKLQIKALEN 98 (380)
Q Consensus 72 ~~r~~~~~~~~~~e~~~~~~~~~~~~~ 98 (380)
+++-..|.+.|..+...|+.+|++|++
T Consensus 61 ~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 61 EQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455566788888888888888865
No 39
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=20.25 E-value=47 Score=23.96 Aligned_cols=19 Identities=47% Similarity=0.590 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040777 56 REEQRWLREEQRWFREEQR 74 (380)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~r 74 (380)
||+--=.=||=|||-||-|
T Consensus 8 ReqL~qKFEeIRwlIeE~R 26 (58)
T 1pd3_A 8 REQLGQKFEEIRWLIEEVR 26 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4433334466667766655
No 40
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=20.19 E-value=45 Score=36.37 Aligned_cols=22 Identities=36% Similarity=0.972 Sum_probs=18.7
Q ss_pred ccCCCCCCCcee------------eCCCCCCcee
Q 040777 358 MKCPYCEGLGYT------------ICDVCEGKAV 379 (380)
Q Consensus 358 ~~C~~C~G~G~~------------~C~~C~G~G~ 379 (380)
-.|+.|.|.|.+ .|..|+|+.+
T Consensus 639 g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~ 672 (842)
T 2vf7_A 639 GRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRY 672 (842)
T ss_dssp TBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCB
T ss_pred cccccccCCCccchhhhcCCccceecccccCccc
Confidence 359999999977 6999999864
Done!