Your job contains 1 sequence.
>040778
MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR
SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS
QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN
ISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFC
LRGDMCPMEHGVNRIVVEDVQV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040778
(262 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2089094 - symbol:AT3G27700 species:3702 "Arabi... 463 5.4e-43 1
UNIPROTKB|F1P7R9 - symbol:RBM26 "Uncharacterized protein"... 146 3.8e-08 2
UNIPROTKB|J9NRX5 - symbol:RBM26 "Uncharacterized protein"... 146 4.1e-08 2
UNIPROTKB|Q5T8P6 - symbol:RBM26 "RNA-binding protein 26" ... 146 4.1e-08 2
UNIPROTKB|F1RP70 - symbol:RBM26 "Uncharacterized protein"... 146 4.1e-08 2
UNIPROTKB|F1MYG6 - symbol:RBM26 "Uncharacterized protein"... 146 4.1e-08 2
RGD|1308297 - symbol:RGD1308297 "similar to CG10084-PA" s... 146 8.3e-08 2
MGI|MGI:1921463 - symbol:Rbm26 "RNA binding motif protein... 146 8.4e-08 2
ZFIN|ZDB-GENE-050706-50 - symbol:zgc:109736 "zgc:109736" ... 146 1.3e-07 2
UNIPROTKB|E1BQE2 - symbol:RBM26 "Uncharacterized protein"... 142 3.2e-07 2
UNIPROTKB|E1BQE3 - symbol:RBM26 "Uncharacterized protein"... 142 3.4e-07 2
UNIPROTKB|E1BQE4 - symbol:RBM26 "Uncharacterized protein"... 142 3.6e-07 2
UNIPROTKB|Q2T9I5 - symbol:rbm26 "RNA-binding protein 26" ... 142 6.9e-07 1
FB|FBgn0002044 - symbol:swm "second mitotic wave missing"... 133 8.2e-06 1
WB|WBGene00015143 - symbol:B0336.3 species:6239 "Caenorha... 131 8.6e-06 1
ZFIN|ZDB-GENE-110411-31 - symbol:rbm27 "RNA binding motif... 130 1.6e-05 2
UNIPROTKB|F6X967 - symbol:RBM27 "Uncharacterized protein"... 124 9.2e-05 1
UNIPROTKB|F1RM12 - symbol:LOC100511626 "Uncharacterized p... 119 0.00010 1
UNIPROTKB|J9NT04 - symbol:RBM27 "Uncharacterized protein"... 117 0.00059 1
UNIPROTKB|Q9P2N5 - symbol:RBM27 "RNA-binding protein 27" ... 116 0.00076 1
RGD|1311966 - symbol:Rbm27 "RNA binding motif protein 27"... 115 0.00087 1
UNIPROTKB|F1LWJ2 - symbol:F1LWJ2 "Uncharacterized protein... 115 0.00092 1
UNIPROTKB|F1M1R4 - symbol:F1M1R4 "Uncharacterized protein... 115 0.00098 1
>TAIR|locus:2089094 [details] [associations]
symbol:AT3G27700 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AB018114 EMBL:AY062574 EMBL:BT000780
EMBL:AK229929 IPI:IPI00547344 RefSeq:NP_189407.2 RefSeq:NP_851008.1
UniGene:At.8026 ProteinModelPortal:Q9LVX1 SMR:Q9LVX1 PaxDb:Q9LVX1
PRIDE:Q9LVX1 EnsemblPlants:AT3G27700.1 EnsemblPlants:AT3G27700.2
GeneID:822392 KEGG:ath:AT3G27700 TAIR:At3g27700 eggNOG:NOG280405
HOGENOM:HOG000078746 InParanoid:Q9LVX1 KO:K13192 OMA:DQPLWNN
PhylomeDB:Q9LVX1 ProtClustDB:CLSN2690575 Genevestigator:Q9LVX1
Uniprot:Q9LVX1
Length = 908
Score = 463 (168.0 bits), Expect = 5.4e-43, P = 5.4e-43
Identities = 105/206 (50%), Positives = 132/206 (64%)
Query: 60 RSYRKRNKPFENGHSFRENES-QA-SESW-KNYNIPPLEKDFTAKFERRRPGFASLSRAP 116
R+++ R K S ++ S QA S + KNY F+ + E+R G S R
Sbjct: 36 RNHKHRRKEETRSQSLEQDSSDQAFSRPYRKNYRHYENGNSFS-EHEKRSFGTGSGQRVQ 94
Query: 117 LDLSQRIRGNNTFYGDLGPXXXXXXDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGR 176
D +QR+R N F D GP + SW QRD+RF+ VD++S ++Q SM F GR
Sbjct: 95 FD-NQRMRSNPMFSRDSGPGRGRG-NYGSWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGR 152
Query: 177 GLPNISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFE 235
GL +S +Q+A + FG+IPGVPNGGLD LQG+LRPPLN+ LNMGI RQRCRDFE
Sbjct: 153 GLAGVSAAQSAPWPPFGMIPGVPNGGLDGFHH--LQGSLRPPLNAPLNMGIPRQRCRDFE 210
Query: 236 ERGFCLRGDMCPMEHGVNRIVVEDVQ 261
ERGFCLRGDMCPMEHG+NRIVV+DVQ
Sbjct: 211 ERGFCLRGDMCPMEHGMNRIVVDDVQ 236
Score = 159 (61.0 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 37/84 (44%), Positives = 46/84 (54%)
Query: 1 MELKVSSPKPASLSPPDCTSX--XXXXXXXXXXXXXXXXXXXXXXTRSQSLERDSLDQVY 58
MEL VSSPK + LSPPDC S TRSQSLE+DS DQ +
Sbjct: 1 MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAF 60
Query: 59 MRSYRKRNKPFENGHSFRENESQA 82
R YRK + +ENG+SF E+E ++
Sbjct: 61 SRPYRKNYRHYENGNSFSEHEKRS 84
>UNIPROTKB|F1P7R9 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13192 Gene3D:1.20.1390.10 CTD:64062
GeneTree:ENSGT00510000046929 EMBL:AAEX03013266 EMBL:AAEX03013264
EMBL:AAEX03013265 RefSeq:XP_858194.2 Ensembl:ENSCAFT00000008475
GeneID:476955 KEGG:cfa:476955 Uniprot:F1P7R9
Length = 980
Score = 146 (56.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
Score = 46 (21.3 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 61 SYRKRNKPFENGHSFRENESQASESW------KNYNI-PPLEKDFTAKFERRRPGFASLS 113
S R + P ++ +REN S+ ++Y+ PP + ++ RRR S S
Sbjct: 121 SRRLNHSPPQSSSRYRENRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYS 180
Query: 114 RA 115
R+
Sbjct: 181 RS 182
>UNIPROTKB|J9NRX5 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
OMA:PREKPPN EMBL:AAEX03013266 EMBL:AAEX03013264 EMBL:AAEX03013265
Ensembl:ENSCAFT00000049269 Uniprot:J9NRX5
Length = 1007
Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
Score = 46 (21.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 61 SYRKRNKPFENGHSFRENESQASESW------KNYNI-PPLEKDFTAKFERRRPGFASLS 113
S R + P ++ +REN S+ ++Y+ PP + ++ RRR S S
Sbjct: 121 SRRLNHSPPQSSSRYRENRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYS 180
Query: 114 RA 115
R+
Sbjct: 181 RS 182
>UNIPROTKB|Q5T8P6 [details] [associations]
symbol:RBM26 "RNA-binding protein 26" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0010923 "negative regulation of
phosphatase activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923
eggNOG:NOG280405 KO:K13192 Gene3D:1.20.1390.10 EMBL:AK024610
EMBL:AK027339 EMBL:AK027456 EMBL:AK302871 EMBL:AF116667
EMBL:AL159974 EMBL:AL139006 EMBL:BC041655 EMBL:BC111697
EMBL:BC111739 EMBL:AL834343 EMBL:BX648672 EMBL:AF273052
IPI:IPI00032188 IPI:IPI00166555 IPI:IPI00329545 IPI:IPI00646837
IPI:IPI00795335 IPI:IPI00827541 RefSeq:NP_071401.3
UniGene:Hs.558528 ProteinModelPortal:Q5T8P6 SMR:Q5T8P6
IntAct:Q5T8P6 PhosphoSite:Q5T8P6 DMDM:124021002 PaxDb:Q5T8P6
PRIDE:Q5T8P6 Ensembl:ENST00000267229 Ensembl:ENST00000327303
Ensembl:ENST00000438724 Ensembl:ENST00000438737 GeneID:64062
KEGG:hsa:64062 UCSC:uc001vkx.2 UCSC:uc001vky.2 UCSC:uc001vla.2
UCSC:uc001vlc.1 CTD:64062 GeneCards:GC13M079888 HGNC:HGNC:20327
HPA:HPA040252 neXtProt:NX_Q5T8P6 PharmGKB:PA134982324
HOVERGEN:HBG057372 InParanoid:Q5T8P6 ChiTaRS:RBM26 GenomeRNAi:64062
NextBio:65822 PMAP-CutDB:Q5T8P6 ArrayExpress:Q5T8P6 Bgee:Q5T8P6
CleanEx:HS_RBM26 Genevestigator:Q5T8P6 Uniprot:Q5T8P6
Length = 1007
Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
Score = 46 (21.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 61 SYRKRNKPFENGHSFRENESQASESW------KNYNI-PPLEKDFTAKFERRRPGFASLS 113
S R + P ++ +REN S+ ++Y+ PP + ++ RRR S S
Sbjct: 121 SRRLNHSPPQSSSRYRENRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYS 180
Query: 114 RA 115
R+
Sbjct: 181 RS 182
>UNIPROTKB|F1RP70 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923
GeneTree:ENSGT00510000046929 OMA:PREKPPN EMBL:CT971574
EMBL:CT967301 Ensembl:ENSSSCT00000010394 Uniprot:F1RP70
Length = 1007
Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
Score = 46 (21.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 61 SYRKRNKPFENGHSFRENESQASESW------KNYNI-PPLEKDFTAKFERRRPGFASLS 113
S R + P ++ +REN S+ ++Y+ PP + ++ RRR S S
Sbjct: 121 SRRLNHSPPQSSSRYRENRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYS 180
Query: 114 RA 115
R+
Sbjct: 181 RS 182
>UNIPROTKB|F1MYG6 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0010923
GeneTree:ENSGT00510000046929 EMBL:DAAA02033656 IPI:IPI01001784
Ensembl:ENSBTAT00000023371 OMA:PREKPPN Uniprot:F1MYG6
Length = 1012
Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
Score = 46 (21.3 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 61 SYRKRNKPFENGHSFRENESQASESW------KNYNI-PPLEKDFTAKFERRRPGFASLS 113
S R + P ++ +REN S+ ++Y+ PP + ++ RRR S S
Sbjct: 121 SRRLNHSPPQSSSRYRENRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYS 180
Query: 114 RA 115
R+
Sbjct: 181 RS 182
>RGD|1308297 [details] [associations]
symbol:RGD1308297 "similar to CG10084-PA" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 RGD:1308297
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.20.1390.10
IPI:IPI00948891 PRIDE:D4A9G0 Ensembl:ENSRNOT00000064502
ArrayExpress:D4A9G0 Uniprot:D4A9G0
Length = 1008
Score = 146 (56.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
Score = 43 (20.2 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 61 SYRKRNKPFENGHSFRENESQASESW------KNYNI-PPLEKDFTAKFERRRPGFASLS 113
S R + P ++ +R+N S+ ++Y+ PP + ++ RRR S S
Sbjct: 121 SRRLNHSPPQSSSRYRDNRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYS 180
Query: 114 RA 115
R+
Sbjct: 181 RS 182
>MGI|MGI:1921463 [details] [associations]
symbol:Rbm26 "RNA binding motif protein 26" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 MGI:MGI:1921463 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0010923 eggNOG:NOG280405 KO:K13192 Gene3D:1.20.1390.10
CTD:64062 HOVERGEN:HBG057372 ChiTaRS:RBM26 EMBL:BC011531
EMBL:BC029079 EMBL:BC066051 EMBL:AK049083 EMBL:AK051686
EMBL:AK139077 EMBL:AK172039 IPI:IPI00223561 IPI:IPI00466369
IPI:IPI00828361 IPI:IPI00828462 IPI:IPI00990343 RefSeq:NP_598838.3
UniGene:Mm.474531 ProteinModelPortal:Q6NZN0 SMR:Q6NZN0
PhosphoSite:Q6NZN0 PaxDb:Q6NZN0 PRIDE:Q6NZN0
Ensembl:ENSMUST00000022715 Ensembl:ENSMUST00000172122 GeneID:74213
KEGG:mmu:74213 UCSC:uc007uxk.1 UCSC:uc007uxm.1 UCSC:uc007uxn.1
GeneTree:ENSGT00510000046929 InParanoid:Q6NZN0 OrthoDB:EOG498V06
NextBio:340120 Bgee:Q6NZN0 CleanEx:MM_RBM26 Genevestigator:Q6NZN0
Uniprot:Q6NZN0
Length = 1012
Score = 146 (56.5 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
Score = 43 (20.2 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 61 SYRKRNKPFENGHSFRENESQASESW------KNYNI-PPLEKDFTAKFERRRPGFASLS 113
S R + P ++ +R+N S+ ++Y+ PP + ++ RRR S S
Sbjct: 121 SRRLNHSPPQSSSRYRDNRSRDERKKDDRSRKRDYDRNPPRRDSYRDRYNRRRGRSRSYS 180
Query: 114 RA 115
R+
Sbjct: 181 RS 182
>ZFIN|ZDB-GENE-050706-50 [details] [associations]
symbol:zgc:109736 "zgc:109736" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 ZFIN:ZDB-GENE-050706-50 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
EMBL:CABZ01074409 EMBL:CABZ01074410 EMBL:CABZ01074411
EMBL:CABZ01074412 IPI:IPI00634705 Ensembl:ENSDART00000114086
ArrayExpress:F1QJD3 Bgee:F1QJD3 Uniprot:F1QJD3
Length = 1009
Score = 146 (56.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 23/38 (60%), Positives = 32/38 (84%)
Query: 225 GISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
G R+RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 298 GPPRKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 335
Score = 41 (19.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 76 RENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRA 115
+++ S+ E +N PP + ++ RRR S SR+
Sbjct: 145 KDDRSRKREYDRN---PPRRDSYRERYNRRRERSRSYSRS 181
Score = 36 (17.7 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 44 TRSQSLERDSLDQVYMRSYRKR 65
+RS+S ERDS Y S +R
Sbjct: 215 SRSRSRERDSGKPKYEHSRPER 236
>UNIPROTKB|E1BQE2 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929 EMBL:AADN02042714
EMBL:AADN02042715 EMBL:AADN02042716 EMBL:AADN02042717
IPI:IPI00572212 Ensembl:ENSGALT00000027333 ArrayExpress:E1BQE2
Uniprot:E1BQE2
Length = 964
Score = 142 (55.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
+ ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 287 LPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 323
Score = 42 (19.8 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 61 SYRKR-NKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDL 119
SYR R N+ G S R S SW + ++D + R R L + D+
Sbjct: 164 SYRDRYNR--RRGRS-RSYSRSRSRSWSKERLRDRDRDRSRSRSRTRSRERDLGKPKYDM 220
Query: 120 SQ 121
+
Sbjct: 221 DR 222
Score = 37 (18.1 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 92 PPLEKDFTAKFERRRPGFASLSRA 115
PP + ++ RRR S SR+
Sbjct: 159 PPRRDSYRDRYNRRRGRSRSYSRS 182
>UNIPROTKB|E1BQE3 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13192 Gene3D:1.20.1390.10 CTD:64062
GeneTree:ENSGT00510000046929 EMBL:AADN02042714 EMBL:AADN02042715
EMBL:AADN02042716 EMBL:AADN02042717 IPI:IPI00602502
RefSeq:XP_416998.2 UniGene:Gga.50524 Ensembl:ENSGALT00000027332
GeneID:418804 KEGG:gga:418804 NextBio:20821945 ArrayExpress:E1BQE3
Uniprot:E1BQE3
Length = 986
Score = 142 (55.0 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
+ ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 287 LPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 323
Score = 42 (19.8 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 61 SYRKR-NKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDL 119
SYR R N+ G S R S SW + ++D + R R L + D+
Sbjct: 164 SYRDRYNR--RRGRS-RSYSRSRSRSWSKERLRDRDRDRSRSRSRTRSRERDLGKPKYDM 220
Query: 120 SQ 121
+
Sbjct: 221 DR 222
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 92 PPLEKDFTAKFERRRPGFASLSRA 115
PP + ++ RRR S SR+
Sbjct: 159 PPRRDSYRDRYNRRRGRSRSYSRS 182
>UNIPROTKB|E1BQE4 [details] [associations]
symbol:RBM26 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0010923
"negative regulation of phosphatase activity" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00356 SMART:SM00360 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0010923 GeneTree:ENSGT00510000046929 OMA:PREKPPN
EMBL:AADN02042714 EMBL:AADN02042715 EMBL:AADN02042716
EMBL:AADN02042717 IPI:IPI00599086 Ensembl:ENSGALT00000027331
ArrayExpress:E1BQE4 Uniprot:E1BQE4
Length = 1011
Score = 142 (55.0 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
+ ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 288 LPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 324
Score = 42 (19.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 16/62 (25%), Positives = 24/62 (38%)
Query: 61 SYRKR-NKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDL 119
SYR R N+ G S R S SW + ++D + R R L + D+
Sbjct: 165 SYRDRYNR--RRGRS-RSYSRSRSRSWSKERLRDRDRDRSRSRSRTRSRERDLGKPKYDM 221
Query: 120 SQ 121
+
Sbjct: 222 DR 223
Score = 37 (18.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 92 PPLEKDFTAKFERRRPGFASLSRA 115
PP + ++ RRR S SR+
Sbjct: 160 PPRRDSYRDRYNRRRGRSRSYSRS 183
>UNIPROTKB|Q2T9I5 [details] [associations]
symbol:rbm26 "RNA-binding protein 26" species:8355 "Xenopus
laevis" [GO:0010923 "negative regulation of phosphatase activity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0010923 KO:K13192 Gene3D:1.20.1390.10 CTD:64062
HOVERGEN:HBG057372 EMBL:BC043744 EMBL:BC111508
RefSeq:NP_001079468.1 UniGene:Xl.24907 ProteinModelPortal:Q2T9I5
GeneID:379155 KEGG:xla:379155 Xenbase:XB-GENE-960059 Uniprot:Q2T9I5
Length = 1059
Score = 142 (55.0 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 21/37 (56%), Positives = 32/37 (86%)
Query: 226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
+ ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 328 MQKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 364
>FB|FBgn0002044 [details] [associations]
symbol:swm "second mitotic wave missing" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0007346 "regulation of mitotic cell cycle" evidence=NAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0045879 "negative regulation of smoothened signaling pathway"
evidence=IGI] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF01480 PROSITE:PS50103
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0000166
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13192 Gene3D:1.20.1390.10 GO:GO:0045879
GeneTree:ENSGT00510000046929 EMBL:AY095056 EMBL:EF601876
RefSeq:NP_609976.1 RefSeq:NP_724201.1 UniGene:Dm.12338 SMR:Q9VIV2
IntAct:Q9VIV2 MINT:MINT-1007472 STRING:Q9VIV2
EnsemblMetazoa:FBtr0081244 EnsemblMetazoa:FBtr0081245 GeneID:35235
KEGG:dme:Dmel_CG10084 UCSC:CG10084-RA CTD:35235 FlyBase:FBgn0002044
InParanoid:Q9VIV2 OMA:HAEANVA OrthoDB:EOG4V41RF GenomeRNAi:35235
NextBio:792519 Uniprot:Q9VIV2
Length = 1062
Score = 133 (51.9 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
RQRCRDF+E+G+C+RG+ CP +HGVN +V E +
Sbjct: 366 RQRCRDFDEKGYCVRGETCPWDHGVNPVVFEGI 398
>WB|WBGene00015143 [details] [associations]
symbol:B0336.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0071688 "striated muscle myosin thick filament
assembly" evidence=IMP] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
SMART:SM00360 GO:GO:0040010 GO:GO:0000166 GO:GO:0008270
GO:GO:0071688 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0003676
EMBL:FO080138 eggNOG:NOG280405 KO:K13192
GeneTree:ENSGT00510000046929 OMA:SSRRRCK RefSeq:NP_498234.1
ProteinModelPortal:Q10954 SMR:Q10954 IntAct:Q10954 STRING:Q10954
PaxDb:Q10954 EnsemblMetazoa:B0336.3 GeneID:175800
KEGG:cel:CELE_B0336.3 UCSC:B0336.3 CTD:175800 WormBase:B0336.3
HOGENOM:HOG000018774 InParanoid:Q10954 NextBio:889730
Uniprot:Q10954
Length = 719
Score = 131 (51.2 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 24/48 (50%), Positives = 33/48 (68%)
Query: 212 GTLRPPLNSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVED 259
G+ PP S SR+RC+DFEERG+C+RGD CP HG + +VV++
Sbjct: 197 GSRTPPYKSRS----SRRRCKDFEERGYCIRGDQCPYYHGRDPVVVDE 240
>ZFIN|ZDB-GENE-110411-31 [details] [associations]
symbol:rbm27 "RNA binding motif protein 27"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 ZFIN:ZDB-GENE-110411-31 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
EMBL:CU468941 IPI:IPI01024434 Ensembl:ENSDART00000148928
ArrayExpress:F8W2E8 Bgee:F8W2E8 Uniprot:F8W2E8
Length = 1031
Score = 130 (50.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 18/33 (54%), Positives = 29/33 (87%)
Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
+ RCRD++E+GFC+RGD+CP +HG + ++V+DV
Sbjct: 286 KHRCRDYDEKGFCIRGDLCPFDHGNDPLIVDDV 318
Score = 41 (19.5 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 60 RSYRKRNKPFENGHSFRENESQASE 84
R R+R P N F NES+A +
Sbjct: 107 RENRRRRSPLRNRSDF--NESRARD 129
>UNIPROTKB|F6X967 [details] [associations]
symbol:RBM27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480 PROSITE:PS50103
GO:GO:0000166 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
OMA:EDCQIFS EMBL:AAEX03001429 Ensembl:ENSCAFT00000010424
EMBL:AAEX03001427 EMBL:AAEX03001428 Uniprot:F6X967
Length = 1065
Score = 124 (48.7 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 57/217 (26%), Positives = 100/217 (46%)
Query: 50 ERDSLDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKD--FTAKFERRRP 107
ERD + Y + R++ E RE + + + W++Y+ E++ + K++ RR
Sbjct: 110 ERDGRKKKYPSPQKTRSESSER--RTREKKREDGK-WRDYD-RYYERNELYREKYDWRRG 165
Query: 108 GFASLSRAP-LDLSQ-RIRGNNTFYGDLGPXXXXXXDSASWNQRDTRFSSV--DIASQIL 163
S S++ L S+ R RG + D P + A +R ++F S D+ S +
Sbjct: 166 RSKSRSKSRGLSRSRSRSRGRSK---DRDPNRNVASE-AEHRER-SKFKSERNDLESSYV 220
Query: 164 QPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLN 223
P S PP + + S +Q+ +I + +T S NS
Sbjct: 221 -PVSAPPPSSSEQ---YSSGAQSIPSTVTVIAPAHHSE-NTTESWSNYYNNHSSSNSFGR 275
Query: 224 MGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
++RCRD++ERGFC+ GD+C +HG + +VV++V
Sbjct: 276 NPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEV 312
>UNIPROTKB|F1RM12 [details] [associations]
symbol:LOC100511626 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR002483
Pfam:PF00642 Pfam:PF01480 PROSITE:PS50103 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 Gene3D:1.20.1390.10
GeneTree:ENSGT00510000046929 OMA:DYSAYER EMBL:FP236569
RefSeq:XP_003124122.2 Ensembl:ENSSSCT00000015753 GeneID:100511626
KEGG:ssc:100511626 Uniprot:F1RM12
Length = 430
Score = 119 (46.9 bits), Expect = 0.00010, P = 0.00010
Identities = 63/226 (27%), Positives = 106/226 (46%)
Query: 50 ERDSLDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKD--FTAKFERRRP 107
ERD + Y + R++ E RE + + + W++Y+ E++ + K++ RR
Sbjct: 110 ERDGRKKKYPSPQKTRSESSER--RTREKKREDGK-WRDYD-RYYERNELYREKYDWRRG 165
Query: 108 GFASLSRAP-LDLSQ-RIRGNNTFYGDLGPXXXXXXDSASWNQRDTRFSSV--DIASQIL 163
S S++ L S+ R RG + D P S +R ++F S D+ S +
Sbjct: 166 RSKSRSKSRGLSRSRSRSRGRSK---DRDPNR-----SVEHRER-SKFKSERNDLESSYV 216
Query: 164 QPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLN---- 219
P S PP PN S+ Q +S A +P+ P+ + T N
Sbjct: 217 -PVSAPP--------PN-SSEQYSSGA----QSIPSTVTVIAPAHHSENTTESWSNYYNN 262
Query: 220 --SSLNMGIS---RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
SS + G + ++RCRD++ERGFC+ GD+C +HG + +VV++V
Sbjct: 263 HSSSNSFGRNPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEV 308
>UNIPROTKB|J9NT04 [details] [associations]
symbol:RBM27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.20.1390.10 GeneTree:ENSGT00510000046929
EMBL:AAEX03001429 EMBL:AAEX03001427 EMBL:AAEX03001428
Ensembl:ENSCAFT00000049077 Uniprot:J9NT04
Length = 1061
Score = 117 (46.2 bits), Expect = 0.00059, P = 0.00059
Identities = 57/217 (26%), Positives = 100/217 (46%)
Query: 50 ERDSLDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKD--FTAKFERRRP 107
ERD + Y + R++ E RE + + + W++Y+ E++ + K++ RR
Sbjct: 110 ERDGRKKKYPSPQKTRSESSER--RTREKKREDGK-WRDYD-RYYERNELYREKYDWRRG 165
Query: 108 GFASLSRAP-LDLSQ-RIRGNNTFYGDLGPXXXXXXDSASWNQRDTRFSSV--DIASQIL 163
S S++ L S+ R RG + D P + A +R ++F S D+ S +
Sbjct: 166 RSKSRSKSRGLSRSRSRSRGRSK---DRDPNR----NVAEHRER-SKFKSERNDLESSYV 217
Query: 164 QPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLN 223
P S PP + + S +Q+ +I + +T S NS
Sbjct: 218 -PVSAPPPSSSEQ---YSSGAQSIPSTVTVIAPAHHSE-NTTESWSNYYNNHSSSNSFGR 272
Query: 224 MGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
++RCRD++ERGFC+ GD+C +HG + +VV++V
Sbjct: 273 NPPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEV 309
>UNIPROTKB|Q9P2N5 [details] [associations]
symbol:RBM27 "RNA-binding protein 27" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00642 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0046872 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:NOG280405 Gene3D:1.20.1390.10 HOVERGEN:HBG057372
EMBL:AC091959 EMBL:AB037732 EMBL:BC033524 IPI:IPI00292975
RefSeq:NP_061862.1 UniGene:Hs.61441 ProteinModelPortal:Q9P2N5
SMR:Q9P2N5 IntAct:Q9P2N5 STRING:Q9P2N5 PhosphoSite:Q9P2N5
DMDM:124021005 PaxDb:Q9P2N5 PeptideAtlas:Q9P2N5 PRIDE:Q9P2N5
Ensembl:ENST00000265271 GeneID:54439 KEGG:hsa:54439 UCSC:uc003lnz.4
CTD:54439 GeneCards:GC05P145563 H-InvDB:HIX0005281 HGNC:HGNC:29243
HPA:HPA035944 HPA:HPA036422 neXtProt:NX_Q9P2N5 PharmGKB:PA134925458
HOGENOM:HOG000067963 InParanoid:Q9P2N5 KO:K13193 OMA:EDCQIFS
OrthoDB:EOG4FJ88J PhylomeDB:Q9P2N5 ChiTaRS:RBM27 GenomeRNAi:54439
NextBio:56662 PMAP-CutDB:Q9P2N5 Bgee:Q9P2N5 CleanEx:HS_RBM27
Genevestigator:Q9P2N5 Uniprot:Q9P2N5
Length = 1060
Score = 116 (45.9 bits), Expect = 0.00076, P = 0.00076
Identities = 62/226 (27%), Positives = 106/226 (46%)
Query: 50 ERDSLDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKD--FTAKFERRRP 107
ERD + Y + R++ E RE + + + W++Y+ E++ + K++ RR
Sbjct: 110 ERDGRKKKYPSPQKTRSESSER--RTREKKREDGK-WRDYD-RYYERNELYREKYDWRRG 165
Query: 108 GFASLSRAP-LDLSQ-RIRGNNTFYGDLGPXXXXXXDSASWNQRDTRFSSV--DIASQIL 163
S S++ L S+ R RG + D P + +R ++F S D+ S +
Sbjct: 166 RSKSRSKSRGLSRSRSRSRGRSK---DRDPNR-----NVEHRER-SKFKSERNDLESSYV 216
Query: 164 QPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLN---- 219
P S PP PN S+ Q +S A +P+ P+ + T N
Sbjct: 217 -PVSAPP--------PN-SSEQYSSGA----QSIPSTVTVIAPAHHSENTTESWSNYYNN 262
Query: 220 --SSLNMGIS---RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
SS + G + ++RCRD++ERGFC+ GD+C +HG + +VV++V
Sbjct: 263 HSSSNSFGRNLPPKRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEV 308
>RGD|1311966 [details] [associations]
symbol:Rbm27 "RNA binding motif protein 27" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00642 PROSITE:PS50103
RGD:1311966 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00510000046929 IPI:IPI00365115
Ensembl:ENSRNOT00000037599 UCSC:RGD:1311966 ArrayExpress:F1M638
Uniprot:F1M638
Length = 941
Score = 115 (45.5 bits), Expect = 0.00087, P = 0.00087
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
++RCRD++ERGFC+ GD+C +HG + +VV++V
Sbjct: 256 KRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEV 288
>UNIPROTKB|F1LWJ2 [details] [associations]
symbol:F1LWJ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00642 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00510000046929
IPI:IPI00778163 Ensembl:ENSRNOT00000060199 ArrayExpress:F1LWJ2
Uniprot:F1LWJ2
Length = 985
Score = 115 (45.5 bits), Expect = 0.00092, P = 0.00092
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
++RCRD++ERGFC+ GD+C +HG + +VV++V
Sbjct: 256 KRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEV 288
>UNIPROTKB|F1M1R4 [details] [associations]
symbol:F1M1R4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR000571 InterPro:IPR012677
Pfam:PF00642 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00510000046929
IPI:IPI00360261 Ensembl:ENSRNOT00000036613 ArrayExpress:F1M1R4
Uniprot:F1M1R4
Length = 1040
Score = 115 (45.5 bits), Expect = 0.00098, P = 0.00098
Identities = 17/33 (51%), Positives = 28/33 (84%)
Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDV 260
++RCRD++ERGFC+ GD+C +HG + +VV++V
Sbjct: 256 KRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEV 288
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 262 233 0.00086 113 3 11 22 0.45 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 608 (65 KB)
Total size of DFA: 185 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.27u 0.10s 20.37t Elapsed: 00:00:01
Total cpu time: 20.27u 0.10s 20.37t Elapsed: 00:00:01
Start: Sat May 11 11:51:48 2013 End: Sat May 11 11:51:49 2013