BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040778
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LVX1|C3H41_ARATH Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis
thaliana GN=At3g27700 PE=1 SV=1
Length = 908
Score = 257 bits (657), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 149/264 (56%), Positives = 179/264 (67%), Gaps = 31/264 (11%)
Query: 1 MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDD-RNHKHRRRE-TRSQSLERDSLDQVY 58
MEL VSSPK + LSPPDC SDPEE+ E++DD RNHKHRR+E TRSQSLE+DS DQ +
Sbjct: 1 MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAF 60
Query: 59 MRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLD 118
R YRK + +ENG+SF E+E +R G S R D
Sbjct: 61 SRPYRKNYRHYENGNSFSEHE------------------------KRSFGTGSGQRVQFD 96
Query: 119 LSQRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGL 178
+QR+R N F D GPGRGRG + SW QRD+RF+ VD++S ++Q SM F GRGL
Sbjct: 97 -NQRMRSNPMFSRDSGPGRGRG-NYGSWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGRGL 154
Query: 179 PNISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEER 237
+S +Q+A + FG+IPGVPNGGLD LQG+LRPPLN+ LNMGI RQRCRDFEER
Sbjct: 155 AGVSAAQSAPWPPFGMIPGVPNGGLDGFHH--LQGSLRPPLNAPLNMGIPRQRCRDFEER 212
Query: 238 GFCLRGDMCPMEHGVNRIVVEDVQ 261
GFCLRGDMCPMEHG+NRIVV+DVQ
Sbjct: 213 GFCLRGDMCPMEHGMNRIVVDDVQ 236
>sp|Q0JDM0|C3H27_ORYSJ Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa
subsp. japonica GN=Os04g0394300 PE=2 SV=2
Length = 903
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 115/267 (43%), Positives = 164/267 (61%), Gaps = 26/267 (9%)
Query: 2 ELKVSSPKPASLSP-PDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
+++V SPK + S + +D E+ E+SD+DDDDRNHKHR+RE R QS + ++ +Q
Sbjct: 14 KIEVPSPKDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENT-EQSPGG 72
Query: 61 SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
+KR+K S E +KDF KF +RRPG + SRAP ++
Sbjct: 73 PLKKRHKISGGADSHGE----------------AQKDFFPKF-KRRPGAGAHSRAP-RVN 114
Query: 121 QRIRGNNTFYGDLGP-GRGRGRDSASWNQRDTRFSS---VDIASQIL-QPASMPPSRFAG 175
R ++ P RGRGR+ A W Q + RF++ +D ASQ+ Q PS F G
Sbjct: 115 PSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPPTHPSLFMG 174
Query: 176 RGLPNISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDF 234
LP+ ++QN S+ +G +PG+PNG LD + +G+QG ++P ++ +++G+ RQRCRDF
Sbjct: 175 PALPSGGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRCRDF 234
Query: 235 EERGFCLRGDMCPMEHGVNRIVVEDVQ 261
EERGFCLRGDMCPMEHG+NRIVVED+Q
Sbjct: 235 EERGFCLRGDMCPMEHGLNRIVVEDMQ 261
>sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2
Length = 1012
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
>sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3
Length = 1007
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
NS + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325
>sp|Q2T9I5|RBM26_XENLA RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2
Length = 1059
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 33/39 (84%)
Query: 224 MGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
+ + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 326 LQMQKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 364
>sp|Q5SFM8|RBM27_MOUSE RNA-binding protein 27 OS=Mus musculus GN=Rbm27 PE=2 SV=3
Length = 1060
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 29/35 (82%)
Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
++RCRD++ERGFC+ GD+C +HG + +VV++V +
Sbjct: 276 KRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVAL 310
>sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2
Length = 1060
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 29/35 (82%)
Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
++RCRD++ERGFC+ GD+C +HG + +VV++V +
Sbjct: 276 KRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVAL 310
>sp|Q55CX9|IPO7_DICDI Probable importin-7 homolog OS=Dictyostelium discoideum
GN=DDB_G0269860 PE=3 SV=1
Length = 1065
Score = 37.4 bits (85), Expect = 0.11, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 17 DCTSDPEEKELSDEDDDDR---NHKHRRRETR---SQSLERDSLDQVYMRSYRKRNKPFE 70
D T PEE+E DE+D++ NHK T +Q + D +V++ K + FE
Sbjct: 899 DGTLKPEEEEFIDENDEEDYFDNHKFEFEFTEIPDNQDCQHDDEGEVFLDDIEKATEYFE 958
Query: 71 NGHSFRENE 79
NG E+E
Sbjct: 959 NGGDLGEDE 967
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 229 QRCRDFEERGFCLRGDMCPMEHGVNRI 255
+ CR FEE G C GD C HG++ +
Sbjct: 118 ELCRPFEENGACKYGDKCQFAHGIHEL 144
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 229 QRCRDFEERGFCLRGDMCPMEHGVNRI 255
+ CR FEE G C GD C HG++ +
Sbjct: 118 ELCRPFEENGACKYGDKCQFAHGIHEL 144
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 229 QRCRDFEERGFCLRGDMCPMEHGVNRI 255
+ CR FEE G C GD C HG++ +
Sbjct: 118 ELCRPFEENGACKYGDKCQFAHGIHEL 144
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 226 ISRQRCRDFEERGFCLRGDMCPMEHGV 252
+S+ C +F E G C+RGD C H +
Sbjct: 484 LSKYPCHNFMENGMCIRGDKCKFSHVI 510
>sp|P30176|YBIA_ECOLI Swarming motility protein YbiA OS=Escherichia coli (strain K12)
GN=ybiA PE=1 SV=1
Length = 160
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 54 LDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFA-SL 112
LD+ Y R+ + P R+ ++W++ + K AKFE+ A L
Sbjct: 57 LDEKYREEIRRVSSPMVAARMGRDRSKPLRKNWESVKEQVMRKALRAKFEQHAELRALLL 116
Query: 113 SRAPLDLSQRIRGNNTFYGDLGPGRGRGR 141
+ AP L + N+ ++GD G G+G+ R
Sbjct: 117 ATAPAKLVEHTE-NDAYWGDGGHGKGKNR 144
>sp|Q9LTS7|C3H65_ARATH Zinc finger CCCH domain-containing protein 65 OS=Arabidopsis
thaliana GN=EMB1789 PE=2 SV=1
Length = 675
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 226 ISRQRCRDFEERGFCLRGDMCPMEH 250
+S+ C +F +GFC RGD C H
Sbjct: 405 LSKYPCNNFITKGFCYRGDSCLFSH 429
>sp|O17917|RN113_CAEEL RING finger protein 113 homolog OS=Caenorhabditis elegans
GN=rnf-113 PE=2 SV=2
Length = 384
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 212 GTLRPP--LNSSLNMGISRQRCRDFEERGFCLRGDMCPMEH 250
G +R P L ++ + C+D++E GFC GD C H
Sbjct: 160 GPVRAPQFLRQTVRWDFAPDICKDYKETGFCTFGDSCKFVH 200
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,457,484
Number of Sequences: 539616
Number of extensions: 4647332
Number of successful extensions: 14391
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 14200
Number of HSP's gapped (non-prelim): 201
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)