Query 040778
Match_columns 262
No_of_seqs 96 out of 98
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 19:02:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 96.3 0.0034 1.2E-07 44.7 3.6 32 225-256 9-40 (77)
2 2cqe_A KIAA1064 protein; CCCH 95.8 0.0063 2.1E-07 46.8 3.5 25 226-251 11-35 (98)
3 1m9o_A Tristetraproline; Cys3H 95.8 0.0015 5.2E-08 46.5 0.0 28 226-253 48-75 (77)
4 3d2q_A Muscleblind-like protei 95.5 0.0028 9.7E-08 45.7 0.5 30 227-257 5-35 (70)
5 2d9n_A Cleavage and polyadenyl 95.3 0.0059 2E-07 44.6 1.6 28 226-254 8-35 (77)
6 2d9m_A Zinc finger CCCH-type d 94.7 0.007 2.4E-07 45.4 0.5 27 227-254 19-45 (69)
7 2fc6_A Nuclear, target of EGR1 94.4 0.021 7.1E-07 40.9 2.3 28 226-253 18-45 (50)
8 2rhk_C Cleavage and polyadenyl 94.0 0.012 4.2E-07 43.0 0.6 28 226-254 14-41 (72)
9 3d2n_A Muscleblind-like protei 93.9 0.021 7.2E-07 43.1 1.8 31 228-259 9-40 (83)
10 2cqe_A KIAA1064 protein; CCCH 93.4 0.019 6.4E-07 44.2 0.7 25 229-253 37-61 (98)
11 2rpp_A Muscleblind-like protei 92.9 0.021 7.1E-07 43.8 0.3 32 228-260 17-49 (89)
12 3u1l_A PRE-mRNA-splicing facto 91.5 0.023 7.9E-07 49.6 -1.1 23 229-252 71-93 (240)
13 2e5s_A Otthump00000018578; ZF- 91.4 0.043 1.5E-06 42.4 0.4 31 226-257 18-49 (98)
14 2d9n_A Cleavage and polyadenyl 85.0 0.21 7.1E-06 36.4 0.4 25 228-253 38-62 (77)
15 3d2q_A Muscleblind-like protei 83.4 0.15 5.2E-06 36.6 -0.9 27 226-254 40-66 (70)
16 3d2n_A Muscleblind-like protei 81.0 0.24 8.3E-06 37.3 -0.6 27 227-255 42-68 (83)
17 2e5s_A Otthump00000018578; ZF- 77.0 0.31 1.1E-05 37.6 -1.2 26 226-253 54-79 (98)
18 2rhk_C Cleavage and polyadenyl 73.1 0.73 2.5E-05 33.4 0.1 25 228-253 44-68 (72)
19 2rpp_A Muscleblind-like protei 69.6 0.6 2.1E-05 35.7 -1.1 26 227-254 50-75 (89)
20 3e50_C Protransforming growth 41.2 6.9 0.00024 27.0 0.5 22 229-252 6-27 (50)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.25 E-value=0.0034 Score=44.72 Aligned_cols=32 Identities=28% Similarity=0.701 Sum_probs=26.4
Q ss_pred CCCCCCCCCccccccccCCCCCCCCCCCCccc
Q 040778 225 GISRQRCRDFEERGFCLRGDMCPMEHGVNRIV 256 (262)
Q Consensus 225 ~~~r~RCrDydekGyC~rGd~CpydHG~Dpvv 256 (262)
..+...|+.|-..|.|..|+.|.|.|+.+.+.
T Consensus 9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~ 40 (77)
T 1m9o_A 9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELR 40 (77)
T ss_dssp CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred CccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence 35667899998889999999999999887554
No 2
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=95.82 E-value=0.0063 Score=46.83 Aligned_cols=25 Identities=40% Similarity=0.975 Sum_probs=18.4
Q ss_pred CCCCCCCCccccccccCCCCCCCCCC
Q 040778 226 ISRQRCRDFEERGFCLRGDMCPMEHG 251 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd~CpydHG 251 (262)
.+...|+.| .+|.|.+|+.|+|.|.
T Consensus 11 ~k~~lC~~f-~~G~C~~G~~C~f~H~ 35 (98)
T 2cqe_A 11 KKRELCKFY-ITGFCARAENCPYMHG 35 (98)
T ss_dssp CCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred CCCccCccc-ccCcCCCCCCCCCCCC
Confidence 456678877 4788888888888776
No 3
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=95.81 E-value=0.0015 Score=46.54 Aligned_cols=28 Identities=25% Similarity=0.581 Sum_probs=0.0
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCC
Q 040778 226 ISRQRCRDFEERGFCLRGDMCPMEHGVN 253 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd~CpydHG~D 253 (262)
.+...|++|...|+|..|+.|.|.|+.+
T Consensus 48 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~ 75 (77)
T 1m9o_A 48 YKTELCHKFKLQGRCPYGSRCHFIHNPT 75 (77)
T ss_dssp ----------------------------
T ss_pred ccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence 3456899999999999999999999864
No 4
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=95.50 E-value=0.0028 Score=45.70 Aligned_cols=30 Identities=30% Similarity=0.825 Sum_probs=24.6
Q ss_pred CCCCCCCccccccccCCCC-CCCCCCCCcccc
Q 040778 227 SRQRCRDFEERGFCLRGDM-CPMEHGVNRIVV 257 (262)
Q Consensus 227 ~r~RCrDydekGyC~rGd~-CpydHG~Dpvvv 257 (262)
+...|++| .+|-|.+|++ |+|.|..+.+.+
T Consensus 5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~~ 35 (70)
T 3d2q_A 5 RLEVCREY-QRGNCNRGENDCRFAHPADSTMI 35 (70)
T ss_dssp EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSCC
T ss_pred cchhCHHH-hcCCCCCCCCCCCCccCcccccc
Confidence 34579999 8999999994 999998876544
No 5
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.29 E-value=0.0059 Score=44.64 Aligned_cols=28 Identities=25% Similarity=0.654 Sum_probs=22.5
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCc
Q 040778 226 ISRQRCRDFEERGFCLRGDMCPMEHGVNR 254 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd~CpydHG~Dp 254 (262)
.+...|+.|-. |.|.+|+.|+|.|..++
T Consensus 8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~ 35 (77)
T 2d9n_A 8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM 35 (77)
T ss_dssp CTTSBCHHHHT-TCCSCTTSSSSBCSCCT
T ss_pred CcceeCHhHcc-CcCCCCCCCCCcccccc
Confidence 56678987776 99999999999998764
No 6
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.69 E-value=0.007 Score=45.42 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=23.8
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCc
Q 040778 227 SRQRCRDFEERGFCLRGDMCPMEHGVNR 254 (262)
Q Consensus 227 ~r~RCrDydekGyC~rGd~CpydHG~Dp 254 (262)
+-..|+.| ++|.|..|+.|.|.||.+-
T Consensus 19 k~~LC~~~-~~G~C~~G~~C~FAHG~~E 45 (69)
T 2d9m_A 19 YFSICDRY-MNGTCPEGNSCKFAHGNAE 45 (69)
T ss_dssp CCSBCHHH-HHSCCSSCSSCSSBSSHHH
T ss_pred CcccCccc-CcCCCCCCCccCCcCCHHH
Confidence 34789999 8999999999999999763
No 7
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=94.35 E-value=0.021 Score=40.88 Aligned_cols=28 Identities=29% Similarity=0.775 Sum_probs=25.5
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCC
Q 040778 226 ISRQRCRDFEERGFCLRGDMCPMEHGVN 253 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd~CpydHG~D 253 (262)
.....|..|-..|||..|..||+.|-.|
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4567899999999999999999999877
No 8
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=94.02 E-value=0.012 Score=42.95 Aligned_cols=28 Identities=25% Similarity=0.654 Sum_probs=23.6
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCc
Q 040778 226 ISRQRCRDFEERGFCLRGDMCPMEHGVNR 254 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd~CpydHG~Dp 254 (262)
.+...|+.|-. |.|.+|+.|+|.|..++
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~ 41 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM 41 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCT
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCcccccc
Confidence 55678998777 99999999999998764
No 9
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=93.93 E-value=0.021 Score=43.09 Aligned_cols=31 Identities=35% Similarity=0.733 Sum_probs=25.8
Q ss_pred CCCCCCccccccccCCC-CCCCCCCCCcccccC
Q 040778 228 RQRCRDFEERGFCLRGD-MCPMEHGVNRIVVED 259 (262)
Q Consensus 228 r~RCrDydekGyC~rGd-~CpydHG~Dpvvv~d 259 (262)
-..|+||-. |-|.||+ .|+|.|-.+.+.|++
T Consensus 9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~~ 40 (83)
T 3d2n_A 9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQVEN 40 (83)
T ss_dssp EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEET
T ss_pred chhcHHHhc-CCCCCCCCCCCCcCCCccccccC
Confidence 457999988 9999997 999999988765543
No 10
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=93.42 E-value=0.019 Score=44.17 Aligned_cols=25 Identities=28% Similarity=0.674 Sum_probs=22.6
Q ss_pred CCCCCccccccccCCCCCCCCCCCC
Q 040778 229 QRCRDFEERGFCLRGDMCPMEHGVN 253 (262)
Q Consensus 229 ~RCrDydekGyC~rGd~CpydHG~D 253 (262)
..|+.|..+|+|..|+.|+|.|...
T Consensus 37 ~~C~~f~~~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 37 FPCKLYHTTGNCINGDDCMFSHDPL 61 (98)
T ss_dssp SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred CcCcCcccCCcCCCCCCCcccCCCC
Confidence 4699999999999999999999865
No 11
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=92.90 E-value=0.021 Score=43.85 Aligned_cols=32 Identities=34% Similarity=0.670 Sum_probs=26.9
Q ss_pred CCCCCCccccccccCCC-CCCCCCCCCcccccCC
Q 040778 228 RQRCRDFEERGFCLRGD-MCPMEHGVNRIVVEDV 260 (262)
Q Consensus 228 r~RCrDydekGyC~rGd-~CpydHG~Dpvvv~dv 260 (262)
-+.|+||-. |-|.||+ .|+|.|-.+.+.|++.
T Consensus 17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~~~ 49 (89)
T 2rpp_A 17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVENG 49 (89)
T ss_dssp ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCBTT
T ss_pred hhhchHHhc-CCCCCCCCCCCCcCCCccccccCC
Confidence 467999987 9999998 9999999887666543
No 12
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=91.50 E-value=0.023 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=19.7
Q ss_pred CCCCCccccccccCCCCCCCCCCC
Q 040778 229 QRCRDFEERGFCLRGDMCPMEHGV 252 (262)
Q Consensus 229 ~RCrDydekGyC~rGd~CpydHG~ 252 (262)
..|..| .||+|.+|+.|+|-|..
T Consensus 71 ~~C~ff-akG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFF-AKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHH-HTTCCSCGGGCSSBBSC
T ss_pred eEcCcc-ccCCCCCCCCCCccCCC
Confidence 468877 67999999999999963
No 13
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.38 E-value=0.043 Score=42.39 Aligned_cols=31 Identities=29% Similarity=0.746 Sum_probs=25.4
Q ss_pred CCCCCCCCccccccccCCC-CCCCCCCCCcccc
Q 040778 226 ISRQRCRDFEERGFCLRGD-MCPMEHGVNRIVV 257 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd-~CpydHG~Dpvvv 257 (262)
.+...|++|-. |-|.||+ .|+|.|..+.+.+
T Consensus 18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~ 49 (98)
T 2e5s_A 18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI 49 (98)
T ss_dssp SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC
T ss_pred hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc
Confidence 34467999987 9999999 7999999876543
No 14
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.95 E-value=0.21 Score=36.38 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCCCCCccccccccCCCCCCCCCCCC
Q 040778 228 RQRCRDFEERGFCLRGDMCPMEHGVN 253 (262)
Q Consensus 228 r~RCrDydekGyC~rGd~CpydHG~D 253 (262)
...|+.|-..|+|. |+.|+|.|...
T Consensus 38 ~~~C~~f~~~G~C~-~~~C~f~H~~~ 62 (77)
T 2d9n_A 38 MPECYFYSKFGECS-NKECPFLHIDP 62 (77)
T ss_dssp SCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred CCCCcccCCCCccC-CCCeeccCCCc
Confidence 34799998889999 99999999764
No 15
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=83.44 E-value=0.15 Score=36.57 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCCc
Q 040778 226 ISRQRCRDFEERGFCLRGDMCPMEHGVNR 254 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd~CpydHG~Dp 254 (262)
.+...|.||-. |.|.+| .|+|-|....
T Consensus 40 ~~~~vC~~flk-G~C~r~-~C~y~H~~~~ 66 (70)
T 3d2q_A 40 NTVTVCMDYIK-GRCSRE-KCKYFHPPAH 66 (70)
T ss_dssp TEEEBCHHHHT-TCCCCT-TCCSBCCCHH
T ss_pred CcceeccccCc-CCCCCC-CcCeeCCHHH
Confidence 34567999875 999999 9999998653
No 16
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=80.96 E-value=0.24 Score=37.27 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCcc
Q 040778 227 SRQRCRDFEERGFCLRGDMCPMEHGVNRI 255 (262)
Q Consensus 227 ~r~RCrDydekGyC~rGd~CpydHG~Dpv 255 (262)
....|.|| -||.|.|+ .|+|-|....+
T Consensus 42 ~~~vC~df-lkG~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 42 RVIACFDS-LKGRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp EEECCHHH-HTTCCCCS-SCSSCCCCHHH
T ss_pred ceeehhHh-hhccccCC-CcceeCChHHH
Confidence 34579998 77999999 99999976543
No 17
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.98 E-value=0.31 Score=37.58 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=21.5
Q ss_pred CCCCCCCCccccccccCCCCCCCCCCCC
Q 040778 226 ISRQRCRDFEERGFCLRGDMCPMEHGVN 253 (262)
Q Consensus 226 ~~r~RCrDydekGyC~rGd~CpydHG~D 253 (262)
.+...|.||- ||.|.++ .|+|.|...
T Consensus 54 ~~~~vC~~fl-kG~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 54 NTVTVCMDYI-KGRCMRE-KCKYFHPPA 79 (98)
T ss_dssp CEEEBCHHHH-HTCCCCT-TCCSBCCCH
T ss_pred Cccccchhhc-cCCCCCC-CcCccCChH
Confidence 4556899985 5999999 999999764
No 18
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=73.08 E-value=0.73 Score=33.44 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCCCCCccccccccCCCCCCCCCCCC
Q 040778 228 RQRCRDFEERGFCLRGDMCPMEHGVN 253 (262)
Q Consensus 228 r~RCrDydekGyC~rGd~CpydHG~D 253 (262)
...|+.|-..|.|.+ +.|+|.|...
T Consensus 44 ~~~C~~f~~~G~C~~-~~C~y~H~~p 68 (72)
T 2rhk_C 44 MSECYFYSKFGECSN-KECPFLHIDP 68 (72)
T ss_dssp CCBCHHHHHHSCCSB-TTCCSBCCCC
T ss_pred CCcccccCCCCCCCC-CCeeccCCCc
Confidence 347999988899999 9999999754
No 19
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=69.57 E-value=0.6 Score=35.71 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.7
Q ss_pred CCCCCCCccccccccCCCCCCCCCCCCc
Q 040778 227 SRQRCRDFEERGFCLRGDMCPMEHGVNR 254 (262)
Q Consensus 227 ~r~RCrDydekGyC~rGd~CpydHG~Dp 254 (262)
....|.|| -||-|.|+ .|+|-|....
T Consensus 50 ~~~vC~df-lkG~C~r~-~Cky~H~~~h 75 (89)
T 2rpp_A 50 RVIACFDS-LKGRCSRE-NCKYLHPPTH 75 (89)
T ss_dssp BEEBCHHH-HHTCCCCT-TCCSBCCCHH
T ss_pred ceeeehhh-hhCcCCCC-CcceecCHHH
Confidence 34579999 58999999 8999998653
No 20
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A
Probab=41.20 E-value=6.9 Score=26.99 Aligned_cols=22 Identities=27% Similarity=0.708 Sum_probs=16.7
Q ss_pred CCCCCccccccccCCCCCCCCCCC
Q 040778 229 QRCRDFEERGFCLRGDMCPMEHGV 252 (262)
Q Consensus 229 ~RCrDydekGyC~rGd~CpydHG~ 252 (262)
..|.+ +.++||+.| .|.|-++.
T Consensus 6 ~~C~~-~~~~yC~nG-~C~~~~~~ 27 (50)
T 3e50_C 6 NDCPD-SHTQFCFHG-TCRFLVQE 27 (50)
T ss_pred cccCh-hhcCcccCC-EEeeccCC
Confidence 35776 459999999 99985543
Done!