Query 040779
Match_columns 300
No_of_seqs 210 out of 2541
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 11:44:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12461 UDP-N-acetylglucosami 100.0 4.4E-37 9.4E-42 264.9 22.0 205 71-298 1-205 (255)
2 COG1043 LpxA Acyl-[acyl carrie 100.0 6.6E-38 1.4E-42 256.3 15.3 207 69-298 3-210 (260)
3 TIGR01853 lipid_A_lpxD UDP-3-O 100.0 3.7E-35 7.9E-40 261.6 21.7 238 26-280 64-303 (324)
4 PRK05289 UDP-N-acetylglucosami 100.0 3.4E-35 7.3E-40 255.3 20.8 207 69-298 2-209 (262)
5 COG1044 LpxD UDP-3-O-[3-hydrox 100.0 8E-35 1.7E-39 251.5 20.7 236 26-279 72-309 (338)
6 PRK00892 lpxD UDP-3-O-[3-hydro 100.0 2.4E-32 5.2E-37 246.7 23.4 236 26-279 71-311 (343)
7 cd03351 LbH_UDP-GlcNAc_AT UDP- 100.0 6.9E-32 1.5E-36 234.1 21.6 203 72-297 2-205 (254)
8 TIGR01852 lipid_A_lpxA acyl-[a 100.0 6.7E-32 1.5E-36 234.2 21.2 204 72-298 1-205 (254)
9 cd03352 LbH_LpxD UDP-3-O-acyl- 100.0 2.3E-29 5E-34 211.9 24.0 199 64-280 2-200 (205)
10 COG1207 GlmU N-acetylglucosami 100.0 1.3E-27 2.9E-32 211.1 17.4 196 54-291 259-455 (460)
11 cd03353 LbH_GlmU_C N-acetyl-gl 99.9 3.7E-26 8.1E-31 190.5 21.4 185 54-277 6-191 (193)
12 TIGR01173 glmU UDP-N-acetylglu 99.9 1.8E-26 3.8E-31 216.7 21.3 187 59-284 257-444 (451)
13 COG1044 LpxD UDP-3-O-[3-hydrox 99.9 1.3E-25 2.8E-30 194.5 18.3 205 69-296 99-309 (338)
14 PRK14355 glmU bifunctional N-a 99.9 4.3E-25 9.4E-30 207.5 23.1 215 28-280 225-447 (459)
15 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.9 2.3E-25 5.1E-30 193.2 19.2 178 54-267 2-191 (254)
16 PRK09451 glmU bifunctional N-a 99.9 2.4E-24 5.2E-29 202.4 21.3 183 60-281 262-446 (456)
17 TIGR01852 lipid_A_lpxA acyl-[a 99.9 2.3E-24 4.9E-29 187.0 19.3 186 54-263 1-186 (254)
18 PRK05289 UDP-N-acetylglucosami 99.9 1.9E-24 4.2E-29 187.9 18.1 184 53-260 4-187 (262)
19 PRK12461 UDP-N-acetylglucosami 99.9 2.8E-24 6E-29 185.4 18.4 182 54-260 2-183 (255)
20 PRK00892 lpxD UDP-3-O-[3-hydro 99.9 1.2E-23 2.6E-28 190.1 21.5 208 68-297 99-312 (343)
21 PRK14352 glmU bifunctional N-a 99.9 3E-23 6.5E-28 196.1 23.5 198 57-296 265-465 (482)
22 COG1043 LpxA Acyl-[acyl carrie 99.9 5.2E-24 1.1E-28 174.8 15.1 187 52-262 4-190 (260)
23 PRK14360 glmU bifunctional N-a 99.9 2.1E-23 4.5E-28 195.8 21.4 193 71-285 251-445 (450)
24 PRK14357 glmU bifunctional N-a 99.9 1.7E-23 3.6E-28 196.4 20.2 188 71-285 244-438 (448)
25 PRK14354 glmU bifunctional N-a 99.9 3E-23 6.6E-28 195.1 21.0 190 70-290 253-450 (458)
26 PRK14358 glmU bifunctional N-a 99.9 8.2E-23 1.8E-27 192.7 23.0 189 78-290 267-456 (481)
27 TIGR01853 lipid_A_lpxD UDP-3-O 99.9 5.9E-23 1.3E-27 183.2 20.7 186 70-276 92-283 (324)
28 PRK14356 glmU bifunctional N-a 99.9 6E-23 1.3E-27 193.0 19.7 170 82-278 270-446 (456)
29 PRK14353 glmU bifunctional N-a 99.9 2E-22 4.4E-27 188.9 23.0 54 228-281 378-431 (446)
30 COG0663 PaaY Carbonic anhydras 99.9 2.5E-22 5.5E-27 159.4 12.7 143 66-297 14-159 (176)
31 PRK14359 glmU bifunctional N-a 99.9 2.7E-21 5.9E-26 180.5 19.8 200 27-279 215-417 (430)
32 cd03352 LbH_LpxD UDP-3-O-acyl- 99.9 7.7E-21 1.7E-25 160.0 19.9 105 139-260 92-196 (205)
33 cd03350 LbH_THP_succinylT 2,3, 99.9 2.2E-20 4.9E-25 147.3 15.9 137 70-278 2-139 (139)
34 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.8 3.2E-20 7E-25 157.9 16.2 61 229-289 159-220 (231)
35 PRK14355 glmU bifunctional N-a 99.8 1.6E-19 3.5E-24 169.8 21.7 178 54-260 258-443 (459)
36 PRK14358 glmU bifunctional N-a 99.8 9.2E-20 2E-24 172.0 19.0 191 59-279 266-464 (481)
37 PRK13627 carnitine operon prot 99.8 6E-20 1.3E-24 152.2 13.2 61 229-289 87-150 (196)
38 cd03353 LbH_GlmU_C N-acetyl-gl 99.8 6.1E-19 1.3E-23 147.0 17.8 166 54-260 24-190 (193)
39 cd05636 LbH_G1P_TT_C_like Puta 99.8 1.9E-18 4.1E-23 140.1 17.8 34 230-263 129-162 (163)
40 PRK14357 glmU bifunctional N-a 99.8 7.1E-19 1.5E-23 165.1 17.5 173 58-260 250-429 (448)
41 PRK14352 glmU bifunctional N-a 99.8 3.6E-18 7.8E-23 161.6 19.5 165 55-257 269-442 (482)
42 PRK14360 glmU bifunctional N-a 99.8 5.3E-18 1.1E-22 159.3 20.0 171 59-259 258-435 (450)
43 PRK09527 lacA galactoside O-ac 99.8 1.6E-18 3.4E-23 144.1 14.4 58 227-284 128-186 (203)
44 PLN02296 carbonate dehydratase 99.8 7.1E-19 1.5E-23 152.2 12.6 61 229-289 135-198 (269)
45 PRK14354 glmU bifunctional N-a 99.8 7.6E-18 1.7E-22 158.5 20.8 173 57-259 259-438 (458)
46 TIGR01173 glmU UDP-N-acetylglu 99.8 2.7E-18 5.8E-23 161.3 16.7 72 77-154 257-328 (451)
47 TIGR03308 phn_thr-fam phosphon 99.8 2.7E-18 5.9E-23 143.5 14.8 154 66-280 5-158 (204)
48 TIGR02287 PaaY phenylacetic ac 99.8 1E-18 2.2E-23 144.4 12.0 60 230-289 86-148 (192)
49 cd04745 LbH_paaY_like paaY-lik 99.8 5.4E-18 1.2E-22 136.2 15.4 57 230-286 78-137 (155)
50 cd04646 LbH_Dynactin_6 Dynacti 99.8 6.5E-18 1.4E-22 136.8 15.2 67 216-283 70-138 (164)
51 PLN02472 uncharacterized prote 99.8 3.7E-18 8.1E-23 145.8 12.7 75 215-290 129-206 (246)
52 PRK10502 putative acyl transfe 99.8 5.8E-18 1.3E-22 139.4 13.2 54 227-280 121-174 (182)
53 PRK09451 glmU bifunctional N-a 99.8 1.2E-17 2.5E-22 157.1 16.5 156 64-260 284-440 (456)
54 cd04650 LbH_FBP Ferripyochelin 99.8 6.3E-18 1.4E-22 135.5 12.0 68 231-298 79-149 (154)
55 cd05636 LbH_G1P_TT_C_like Puta 99.8 5.8E-17 1.3E-21 131.4 17.6 95 54-154 8-102 (163)
56 COG1207 GlmU N-acetylglucosami 99.8 9E-18 2E-22 149.1 12.6 154 65-259 288-442 (460)
57 cd00710 LbH_gamma_CA Gamma car 99.8 5.2E-17 1.1E-21 132.1 16.2 81 193-275 63-143 (167)
58 PRK09677 putative lipopolysacc 99.7 3.8E-17 8.2E-22 135.7 14.5 59 228-286 128-187 (192)
59 PRK14359 glmU bifunctional N-a 99.7 1.3E-16 2.9E-21 148.9 18.7 195 22-260 217-413 (430)
60 cd03357 LbH_MAT_GAT Maltose O- 99.7 3.5E-17 7.7E-22 133.3 12.8 55 226-280 114-168 (169)
61 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 9.7E-17 2.1E-21 137.0 15.7 62 213-277 174-237 (269)
62 cd04646 LbH_Dynactin_6 Dynacti 99.7 1.1E-16 2.4E-21 129.6 14.8 74 193-267 65-138 (164)
63 PRK10092 maltose O-acetyltrans 99.7 4.5E-17 9.8E-22 133.7 11.9 88 194-281 93-180 (183)
64 PRK11830 dapD 2,3,4,5-tetrahyd 99.7 1.2E-16 2.7E-21 137.6 15.1 66 225-293 189-267 (272)
65 cd03358 LbH_WxcM_N_like WcxM-l 99.7 6.9E-17 1.5E-21 123.9 11.4 54 228-281 65-118 (119)
66 PRK14356 glmU bifunctional N-a 99.7 2.8E-16 6E-21 147.9 16.3 204 28-261 226-445 (456)
67 TIGR03570 NeuD_NnaD sugar O-ac 99.7 1.7E-16 3.6E-21 132.8 13.3 103 176-278 99-201 (201)
68 cd05825 LbH_wcaF_like wcaF-lik 99.7 3.1E-16 6.6E-21 118.0 12.6 103 171-280 4-106 (107)
69 COG0110 WbbJ Acetyltransferase 99.7 2.1E-16 4.6E-21 131.3 11.7 96 192-287 85-182 (190)
70 cd03360 LbH_AT_putative Putati 99.7 4.5E-16 9.7E-21 129.3 13.3 102 176-277 96-197 (197)
71 TIGR00965 dapD 2,3,4,5-tetrahy 99.7 1.3E-15 2.9E-20 130.1 16.2 164 68-291 99-262 (269)
72 PRK11132 cysE serine acetyltra 99.7 3E-16 6.5E-21 135.3 11.3 106 171-284 142-247 (273)
73 PLN02296 carbonate dehydratase 99.7 2.7E-15 5.8E-20 130.0 15.9 76 194-270 119-195 (269)
74 cd04645 LbH_gamma_CA_like Gamm 99.7 1.6E-15 3.6E-20 121.6 13.5 54 231-284 78-134 (153)
75 cd04645 LbH_gamma_CA_like Gamm 99.7 1.8E-15 4E-20 121.3 13.7 76 194-270 60-136 (153)
76 cd03350 LbH_THP_succinylT 2,3, 99.7 6.5E-15 1.4E-19 116.1 16.2 58 195-257 76-133 (139)
77 cd04745 LbH_paaY_like paaY-lik 99.7 4E-15 8.6E-20 119.6 15.0 61 212-272 78-139 (155)
78 PLN02739 serine acetyltransfer 99.7 6.4E-16 1.4E-20 135.7 11.0 106 171-284 206-311 (355)
79 cd03359 LbH_Dynactin_5 Dynacti 99.7 5.6E-15 1.2E-19 119.4 15.7 58 233-290 92-152 (161)
80 PRK14353 glmU bifunctional N-a 99.7 6.2E-15 1.3E-19 138.4 18.0 156 59-260 264-426 (446)
81 PLN02694 serine O-acetyltransf 99.6 2.6E-15 5.6E-20 129.5 12.8 106 171-284 161-266 (294)
82 COG1045 CysE Serine acetyltran 99.6 2.2E-15 4.7E-20 121.2 10.8 104 171-282 68-171 (194)
83 cd00710 LbH_gamma_CA Gamma car 99.6 1.3E-14 2.8E-19 118.0 15.5 51 194-246 82-132 (167)
84 TIGR01172 cysE serine O-acetyl 99.6 3.7E-15 8.1E-20 120.3 12.0 82 194-279 81-162 (162)
85 PRK10191 putative acyl transfe 99.6 5.9E-15 1.3E-19 116.3 12.4 102 171-281 42-143 (146)
86 cd04650 LbH_FBP Ferripyochelin 99.6 1.4E-14 3E-19 116.2 14.5 59 212-270 78-137 (154)
87 TIGR02353 NRPS_term_dom non-ri 99.6 1.8E-14 3.9E-19 140.8 17.6 87 192-278 595-695 (695)
88 KOG4750 Serine O-acetyltransfe 99.6 2.2E-15 4.9E-20 122.5 8.0 85 193-281 167-251 (269)
89 PLN02357 serine acetyltransfer 99.6 8.4E-15 1.8E-19 129.7 11.5 107 171-285 227-333 (360)
90 cd03349 LbH_XAT Xenobiotic acy 99.6 1.6E-14 3.5E-19 114.2 11.9 56 225-280 68-123 (145)
91 TIGR02287 PaaY phenylacetic ac 99.6 4E-14 8.6E-19 117.1 13.8 133 66-269 11-144 (192)
92 cd03359 LbH_Dynactin_5 Dynacti 99.6 6.4E-14 1.4E-18 113.2 14.7 58 213-270 90-148 (161)
93 TIGR02353 NRPS_term_dom non-ri 99.6 2.1E-13 4.5E-18 133.4 20.2 81 192-279 370-452 (695)
94 PLN02472 uncharacterized prote 99.6 7.5E-14 1.6E-18 119.4 14.6 74 195-269 127-201 (246)
95 cd04649 LbH_THP_succinylT_puta 99.6 4.9E-14 1.1E-18 109.3 12.0 35 230-266 73-107 (147)
96 PRK11830 dapD 2,3,4,5-tetrahyd 99.6 1.3E-13 2.8E-18 119.0 15.6 68 193-265 175-242 (272)
97 PRK13627 carnitine operon prot 99.5 1.4E-13 3E-18 114.3 13.7 39 231-269 107-146 (196)
98 COG0663 PaaY Carbonic anhydras 99.5 8.5E-14 1.8E-18 110.9 11.1 81 49-134 9-89 (176)
99 cd03354 LbH_SAT Serine acetylt 99.5 3E-13 6.6E-18 100.6 11.8 99 171-277 3-101 (101)
100 cd04647 LbH_MAT_like Maltose O 99.5 3.2E-13 7E-18 101.7 10.9 104 172-280 3-108 (109)
101 COG2171 DapD Tetrahydrodipicol 99.5 2.7E-13 5.8E-18 114.2 9.7 47 229-275 181-227 (271)
102 TIGR03308 phn_thr-fam phosphon 99.5 1.3E-12 2.8E-17 109.4 13.8 47 212-260 108-154 (204)
103 TIGR03570 NeuD_NnaD sugar O-ac 99.5 1.8E-12 3.9E-17 108.3 14.5 64 69-132 87-150 (201)
104 cd03360 LbH_AT_putative Putati 99.5 2.3E-12 4.9E-17 106.9 14.4 61 69-129 84-144 (197)
105 cd04649 LbH_THP_succinylT_puta 99.4 4.4E-12 9.5E-17 98.5 13.3 39 70-108 2-40 (147)
106 TIGR03536 DapD_gpp 2,3,4,5-tet 99.4 3.6E-12 7.8E-17 110.2 12.1 34 231-266 251-284 (341)
107 cd03358 LbH_WxcM_N_like WcxM-l 99.4 5.9E-12 1.3E-16 96.4 12.0 48 86-133 3-50 (119)
108 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.4 1.2E-11 2.7E-16 105.3 13.9 133 66-269 83-216 (231)
109 TIGR03535 DapD_actino 2,3,4,5- 99.4 7.2E-12 1.6E-16 107.8 12.3 57 208-266 195-259 (319)
110 PRK10502 putative acyl transfe 99.3 2.1E-11 4.5E-16 100.5 13.2 47 212-260 124-170 (182)
111 PRK09677 putative lipopolysacc 99.3 3.7E-11 8.1E-16 99.8 14.0 56 212-269 130-186 (192)
112 TIGR03536 DapD_gpp 2,3,4,5-tet 99.3 4.1E-11 8.9E-16 103.7 12.9 38 213-252 251-288 (341)
113 PRK09527 lacA galactoside O-ac 99.3 4.4E-11 9.5E-16 99.6 11.3 55 211-267 130-185 (203)
114 KOG1461 Translation initiation 99.3 2.7E-11 5.9E-16 112.5 10.9 104 36-154 279-382 (673)
115 KOG3121 Dynactin, subunit p25 99.2 3.2E-11 7E-16 91.4 8.3 41 248-288 119-161 (184)
116 PRK10191 putative acyl transfe 99.2 1.7E-10 3.6E-15 91.1 12.5 78 57-134 41-127 (146)
117 TIGR01172 cysE serine O-acetyl 99.2 1.8E-10 3.9E-15 93.1 13.0 79 56-134 60-148 (162)
118 cd03357 LbH_MAT_GAT Maltose O- 99.2 1.3E-10 2.9E-15 94.6 12.0 49 210-260 116-164 (169)
119 TIGR03535 DapD_actino 2,3,4,5- 99.2 1.7E-10 3.7E-15 99.4 13.0 37 213-251 226-262 (319)
120 COG2171 DapD Tetrahydrodipicol 99.2 6.3E-11 1.4E-15 100.0 9.9 114 87-233 108-221 (271)
121 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 2.7E-10 5.8E-15 81.1 10.0 79 66-152 2-80 (81)
122 COG1208 GCD1 Nucleoside-diphos 99.2 2.3E-10 5E-15 104.0 11.7 108 28-150 217-324 (358)
123 TIGR01208 rmlA_long glucose-1- 99.2 4.3E-10 9.4E-15 102.4 13.1 19 29-47 218-236 (353)
124 KOG1461 Translation initiation 99.2 6.9E-11 1.5E-15 109.8 7.7 53 97-154 313-365 (673)
125 PRK10092 maltose O-acetyltrans 99.2 3E-10 6.4E-15 93.4 10.5 48 211-260 128-175 (183)
126 COG1045 CysE Serine acetyltran 99.2 3.3E-10 7.2E-15 91.5 10.3 84 54-137 64-157 (194)
127 PLN02739 serine acetyltransfer 99.1 6.8E-10 1.5E-14 98.0 12.6 81 57-137 205-295 (355)
128 cd00208 LbetaH Left-handed par 99.1 4.1E-10 8.9E-15 79.1 9.1 68 65-132 2-77 (78)
129 PRK05293 glgC glucose-1-phosph 99.1 5.3E-10 1.1E-14 102.9 12.1 118 28-155 240-358 (380)
130 cd05824 LbH_M1P_guanylylT_C Ma 99.1 9.6E-10 2.1E-14 78.0 10.3 77 67-149 3-79 (80)
131 cd05635 LbH_unknown Uncharacte 99.1 1.3E-09 2.9E-14 80.7 11.2 83 64-154 12-94 (101)
132 cd03356 LbH_G1P_AT_C_like Left 99.1 1.3E-09 2.7E-14 77.1 10.3 77 66-149 2-78 (79)
133 cd00208 LbetaH Left-handed par 99.1 5.6E-10 1.2E-14 78.4 8.5 36 229-264 43-78 (78)
134 cd05635 LbH_unknown Uncharacte 99.1 2.7E-09 5.8E-14 79.1 11.9 67 81-154 11-77 (101)
135 PLN02694 serine O-acetyltransf 99.1 1.1E-09 2.4E-14 94.9 11.2 77 58-134 161-247 (294)
136 PLN02241 glucose-1-phosphate a 99.1 1E-09 2.2E-14 102.7 11.5 62 196-263 375-436 (436)
137 KOG4042 Dynactin subunit p27/W 99.1 3.5E-10 7.7E-15 86.5 6.5 37 117-154 26-62 (190)
138 PRK11132 cysE serine acetyltra 99.1 1.4E-09 2.9E-14 94.2 10.9 79 56-134 140-228 (273)
139 cd03356 LbH_G1P_AT_C_like Left 99.1 1.8E-09 3.9E-14 76.3 9.6 64 84-154 2-65 (79)
140 KOG1460 GDP-mannose pyrophosph 99.1 1.3E-09 2.8E-14 93.0 10.2 76 64-157 283-358 (407)
141 cd05787 LbH_eIF2B_epsilon eIF- 99.0 2.3E-09 5.1E-14 75.6 9.9 77 66-149 2-78 (79)
142 cd05787 LbH_eIF2B_epsilon eIF- 99.0 2E-09 4.3E-14 76.0 9.3 64 84-154 2-65 (79)
143 cd05824 LbH_M1P_guanylylT_C Ma 99.0 2.7E-09 5.8E-14 75.7 9.9 57 92-154 10-66 (80)
144 cd04652 LbH_eIF2B_gamma_C eIF- 99.0 2.6E-09 5.5E-14 76.0 9.8 64 84-154 2-65 (81)
145 PLN02357 serine acetyltransfer 99.0 4E-09 8.6E-14 93.9 12.9 78 58-135 227-314 (360)
146 cd04651 LbH_G1P_AT_C Glucose-1 99.0 2.3E-09 5.1E-14 80.0 9.5 79 70-157 2-80 (104)
147 cd05825 LbH_wcaF_like wcaF-lik 99.0 3.7E-09 8.1E-14 79.3 10.4 46 212-259 56-101 (107)
148 cd03354 LbH_SAT Serine acetylt 99.0 7.1E-09 1.5E-13 76.9 10.6 35 117-155 54-88 (101)
149 COG1208 GCD1 Nucleoside-diphos 99.0 5.5E-09 1.2E-13 95.0 11.4 59 90-154 253-311 (358)
150 cd04647 LbH_MAT_like Maltose O 99.0 8.2E-09 1.8E-13 77.5 10.5 33 224-258 70-102 (109)
151 PRK05293 glgC glucose-1-phosph 98.9 8.6E-09 1.9E-13 94.9 10.5 98 54-154 279-379 (380)
152 cd04651 LbH_G1P_AT_C Glucose-1 98.9 1.9E-08 4.2E-13 75.0 9.5 58 89-154 3-60 (104)
153 TIGR01208 rmlA_long glucose-1- 98.9 2.1E-08 4.5E-13 91.4 11.7 53 73-127 246-298 (353)
154 PRK00844 glgC glucose-1-phosph 98.8 2.1E-08 4.5E-13 93.2 10.3 70 79-156 313-382 (407)
155 KOG4042 Dynactin subunit p27/W 98.8 9.8E-09 2.1E-13 78.7 6.3 137 82-265 9-148 (190)
156 TIGR02091 glgC glucose-1-phosp 98.7 5.7E-08 1.2E-12 88.8 10.1 118 28-154 240-359 (361)
157 KOG1322 GDP-mannose pyrophosph 98.7 2E-08 4.4E-13 87.1 6.3 105 29-154 227-331 (371)
158 cd03349 LbH_XAT Xenobiotic acy 98.7 1.3E-07 2.7E-12 74.9 10.4 48 211-260 72-119 (145)
159 KOG1460 GDP-mannose pyrophosph 98.7 4.9E-08 1.1E-12 83.6 8.3 75 58-134 283-357 (407)
160 PRK02862 glgC glucose-1-phosph 98.7 6.6E-08 1.4E-12 90.3 10.1 15 29-43 256-270 (429)
161 COG0110 WbbJ Acetyltransferase 98.7 1.6E-07 3.5E-12 77.8 11.0 52 212-265 124-176 (190)
162 TIGR02092 glgD glucose-1-phosp 98.6 1.1E-07 2.4E-12 87.1 8.7 117 28-154 235-353 (369)
163 COG4801 Predicted acyltransfer 98.6 9.3E-07 2E-11 73.0 12.6 70 63-134 16-85 (277)
164 PRK00725 glgC glucose-1-phosph 98.6 2.4E-07 5.2E-12 86.5 10.5 69 81-157 327-395 (425)
165 PLN02241 glucose-1-phosphate a 98.6 3.1E-07 6.6E-12 86.1 10.6 16 28-43 263-278 (436)
166 PRK02862 glgC glucose-1-phosph 98.5 6.5E-07 1.4E-11 83.7 10.0 33 100-134 309-341 (429)
167 COG0448 GlgC ADP-glucose pyrop 98.5 8.1E-07 1.8E-11 79.7 9.7 89 59-157 275-363 (393)
168 KOG3121 Dynactin, subunit p25 98.5 3.6E-07 7.9E-12 69.7 6.3 95 140-260 55-149 (184)
169 KOG1462 Translation initiation 98.5 4.7E-07 1E-11 80.2 7.9 50 99-154 334-383 (433)
170 KOG1462 Translation initiation 98.5 5.1E-07 1.1E-11 80.0 7.8 33 117-154 334-366 (433)
171 KOG4750 Serine O-acetyltransfe 98.4 7.5E-07 1.6E-11 73.2 6.9 77 59-135 150-236 (269)
172 TIGR02091 glgC glucose-1-phosp 98.4 1.5E-06 3.2E-11 79.5 9.8 77 54-133 280-360 (361)
173 PRK00844 glgC glucose-1-phosph 98.4 1.5E-06 3.3E-11 80.7 9.2 67 64-134 316-382 (407)
174 PF14602 Hexapep_2: Hexapeptid 98.3 9.5E-07 2E-11 51.4 3.7 34 230-265 1-34 (34)
175 COG0448 GlgC ADP-glucose pyrop 98.3 2E-06 4.3E-11 77.2 7.0 78 55-135 283-363 (393)
176 TIGR02092 glgD glucose-1-phosp 98.2 6.4E-06 1.4E-10 75.5 8.4 76 56-134 277-355 (369)
177 KOG1322 GDP-mannose pyrophosph 98.1 4.7E-06 1E-10 72.7 5.2 97 50-152 251-347 (371)
178 PRK00725 glgC glucose-1-phosph 98.0 2.1E-05 4.5E-10 73.6 8.5 65 65-133 329-393 (425)
179 COG4801 Predicted acyltransfer 98.0 0.00037 8E-09 58.0 14.4 87 58-150 17-103 (277)
180 PF00132 Hexapep: Bacterial tr 97.9 7.9E-06 1.7E-10 48.2 2.8 33 231-263 2-34 (36)
181 PF00132 Hexapep: Bacterial tr 97.9 1.3E-05 2.8E-10 47.3 3.2 30 102-131 4-33 (36)
182 PF14602 Hexapep_2: Hexapeptid 97.8 3.6E-05 7.7E-10 44.7 3.9 15 118-132 18-32 (34)
183 PF13720 Acetyltransf_11: Udp 97.6 1.7E-05 3.7E-10 56.3 1.1 33 266-298 1-33 (83)
184 PF07959 Fucokinase: L-fucokin 87.0 2 4.3E-05 40.1 6.7 35 99-134 284-318 (414)
185 PF07959 Fucokinase: L-fucokin 79.6 4 8.7E-05 38.1 5.5 34 81-115 284-317 (414)
186 PF04519 Bactofilin: Polymer-f 55.4 25 0.00053 25.5 4.3 8 147-154 4-11 (101)
187 PRK13412 fkp bifunctional fuco 38.7 49 0.0011 34.5 4.7 15 100-114 355-369 (974)
188 PRK13412 fkp bifunctional fuco 36.3 74 0.0016 33.2 5.6 17 117-133 354-370 (974)
189 COG1664 CcmA Integral membrane 25.7 3.3E+02 0.0072 21.4 7.2 22 69-90 23-44 (146)
190 COG1664 CcmA Integral membrane 24.8 3.3E+02 0.0071 21.4 6.4 9 124-132 58-66 (146)
No 1
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00 E-value=4.4e-37 Score=264.87 Aligned_cols=205 Identities=47% Similarity=0.860 Sum_probs=182.3
Q ss_pred eECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779 71 FIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH 150 (300)
Q Consensus 71 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~ 150 (300)
.|||.++|++++.|++++.|+|+|.|+++++||+++.|++++.|.+++.||+++.|++++.|+.
T Consensus 1 ~Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~---------------- 64 (255)
T PRK12461 1 MIHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGD---------------- 64 (255)
T ss_pred CcCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCC----------------
Confidence 3788888888888999999999999998899999988888888888888888888777776654
Q ss_pred ccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCc
Q 040779 151 HAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH 230 (300)
Q Consensus 151 ~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~ 230 (300)
.++++.+. .+...++||+++.|+++++|+.++..+..++||++++++.++.++++++||+++++++++.+.++
T Consensus 65 ------~pq~~~~~-g~~~~v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~ 137 (255)
T PRK12461 65 ------EPQDFTYK-GEESRLEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGH 137 (255)
T ss_pred ------CCcccccc-CccceeEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCc
Confidence 22333332 23446789999999999999888888889999999999999999999999999999999999999
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED 298 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~ 298 (300)
++|||++++|.++.|.++++|+++++|+++|+|++|+|+++++.|+|||++.+|..+|+|+||++++.
T Consensus 138 v~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~dVpp~~i~~G~pa~~~~~n~vgl~r~g~~~~~~ 205 (255)
T PRK12461 138 VTVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKDVPPYCMMAGHPTNVHGLNAVGLRRRGFSSRAI 205 (255)
T ss_pred eEECCCeEEeCCCEECCCCEECCCcEECCCceEeccCCCCeEEecCcceEeccchhhhhhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999865
No 2
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=100.00 E-value=6.6e-38 Score=256.31 Aligned_cols=207 Identities=49% Similarity=0.807 Sum_probs=189.6
Q ss_pred CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779 69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII 148 (300)
Q Consensus 69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i 148 (300)
.+.|||++.|++.+.|++++.|||+|.|+++++|++++.|+++++|.+.++||+++.|-+.+.|+.
T Consensus 3 ~~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~-------------- 68 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGE-------------- 68 (260)
T ss_pred ccccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCC--------------
Confidence 467899999999999999999999999999999999999999999988888888887777666654
Q ss_pred ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779 149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL 227 (300)
Q Consensus 149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v 227 (300)
.+|+++|+.. ...+.||+++.|+++++|++++..+ .-+.||++++++.++.+.++|.||++|++++++.+
T Consensus 69 --------~pQdlKykge-~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatL 139 (260)
T COG1043 69 --------DPQDLKYKGE-PTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATL 139 (260)
T ss_pred --------CCcccccCCC-ceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeE
Confidence 4566776644 6789999999999999999999766 67899999999999999999999999999999999
Q ss_pred cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779 228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED 298 (300)
Q Consensus 228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~ 298 (300)
.+.+.|||++.+|+.+-|...++||+++++|+.|.|.+|+||+++..|+||+++++|+++|+|+||+.++.
T Consensus 140 AGHV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~DVpPy~~~~Gn~a~l~GlN~vGlkRrgf~~e~i 210 (260)
T COG1043 140 AGHVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQDVPPYVIASGNHARLRGLNIVGLKRRGFSREEI 210 (260)
T ss_pred eccEEECCEEEEcCcceEEEEEEEcchheeccccccccCCCCeEEecCCcccccccceeeeeccCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998753
No 3
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=100.00 E-value=3.7e-35 Score=261.56 Aligned_cols=238 Identities=24% Similarity=0.346 Sum_probs=184.5
Q ss_pred chhhhhhhccchhhHHHHHHHHHhh--cccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEEC
Q 040779 26 GMSFLLLKVRRPCLSSLSTLFLRRL--STALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLG 103 (300)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig 103 (300)
...++....|+..|..+..++.+.. .+.+++.+.++++++++++++|+|+++|++++.||+++.|+++++|++++.||
T Consensus 64 ~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG 143 (324)
T TIGR01853 64 KCAALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIG 143 (324)
T ss_pred cceEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeC
Confidence 3456667888888888765542221 12356666777777777777777777777777777777777777777777777
Q ss_pred CCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCe
Q 040779 104 DGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHV 183 (300)
Q Consensus 104 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~ 183 (300)
++|.|++++.|.+++.||++|.|+++++|+.+.++..... .+.+ ++....+.++||+++.|++++
T Consensus 144 ~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~----~~~~-----------~~i~~~G~vvIgd~v~IGa~~ 208 (324)
T TIGR01853 144 DGSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTA----NGGH-----------VKIPQIGRVIIEDDVEIGANT 208 (324)
T ss_pred CCceECCCcEECCCCEECCCCEECCCcEECCCCccceecc----CCcc-----------eecCccceEEECCCcEECCCC
Confidence 7777777777777777777777777777765433222110 0011 122233458899999999999
Q ss_pred EEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779 184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263 (300)
Q Consensus 184 ~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv 263 (300)
.|+++. ..++.||+++.++..+.|++++.||+++.+.+++.+.++++||+++|+|+++.|.++++|+++++|+++|+|
T Consensus 209 ~I~r~~--~~~t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 209 TIDRGA--FDDTIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred EEecCC--cCcceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 998776 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEeeeceEE
Q 040779 264 SQDVPKYSMVAGERAVL 280 (300)
Q Consensus 264 ~~~v~~~~~~~G~Pa~~ 280 (300)
++|+|++.++.|+||+.
T Consensus 287 ~~~v~~~~~~~G~pa~~ 303 (324)
T TIGR01853 287 TKSIPPPGVYGGIPARP 303 (324)
T ss_pred CCcCCCCcEEEccCccH
Confidence 99999999999999983
No 4
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=100.00 E-value=3.4e-35 Score=255.26 Aligned_cols=207 Identities=49% Similarity=0.807 Sum_probs=176.6
Q ss_pred CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779 69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII 148 (300)
Q Consensus 69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i 148 (300)
...|+|+|+|++.+.|++++.|+|+++|++++.||+++.|++++.|.++++||++|.|++++.|..+
T Consensus 2 ~~~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~------------- 68 (262)
T PRK05289 2 MAKIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGED------------- 68 (262)
T ss_pred CcccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCC-------------
Confidence 3568888888888888889999999999888888888888888888888888888888887777541
Q ss_pred ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCc-cCCceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779 149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSK-SGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL 227 (300)
Q Consensus 149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~-~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v 227 (300)
++++.+. .....+.||+++.|++++.|++.+. ....+.||++++++.++.+.+++.||+++++++++.+
T Consensus 69 ---------~q~~~~~-g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i 138 (262)
T PRK05289 69 ---------PQDLKYK-GEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATL 138 (262)
T ss_pred ---------ceeeccc-CCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCcccc
Confidence 1222222 2233577777888888888776542 3456899999999999999999999999999999999
Q ss_pred cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779 228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED 298 (300)
Q Consensus 228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~ 298 (300)
.++++|||++|||.++.|.++++|+++++|+++|+|++|+|+++++.|+|||..++|..++++.+|+++..
T Consensus 139 ~g~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~di~~~~~~~G~pa~~~~~n~~g~~~~~~~~~~~ 209 (262)
T PRK05289 139 AGHVEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQDVPPYVLAEGNPARLRGLNLVGLKRRGFSREEI 209 (262)
T ss_pred ccccccCCcEEEeecceecCCCEECCCCEEeeecceeccCCCCeEEecccCeEeccchhhhhhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998889999999999999864
No 5
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=100.00 E-value=8e-35 Score=251.53 Aligned_cols=236 Identities=26% Similarity=0.385 Sum_probs=206.7
Q ss_pred chhhhhhhccchhhHHHHHHHHHhhc--ccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEEC
Q 040779 26 GMSFLLLKVRRPCLSSLSTLFLRRLS--TALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLG 103 (300)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig 103 (300)
+..++..+.|...|..+..++.+.+. +.+++.+.|++++.+++++.|+|+++|++++.||+|+.|+++++|+++++||
T Consensus 72 ~~~~Lv~~~P~~~fA~~~~~f~~~~~~~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG 151 (338)
T COG1044 72 KKNALVVKDPYLAFAKVAQLFYRPFNPAAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIG 151 (338)
T ss_pred CceEEEeCCchHHHHHHHHHhccCCccccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEEC
Confidence 45556666688888888766664444 3577889999999999999999999999999999999999999999999999
Q ss_pred CCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCe
Q 040779 104 DGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHV 183 (300)
Q Consensus 104 ~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~ 183 (300)
++++|++++.|..++.||++|.|+++++|+.+.+++. .+.++ +. +......++||++++||.++
T Consensus 152 ~~~~i~~~v~I~~~~~IG~~v~I~~GavIG~dgFg~a----~~~~g-~~-----------Ki~q~g~V~Igd~VeIGanT 215 (338)
T COG1044 152 DGTVIHPNVTIYHNVVIGNNVIIHSGAVIGADGFGYA----GTAIG-WV-----------KIPQIGRVIIGDDVEIGANT 215 (338)
T ss_pred CCcEEcCCCEEecCcEECCceEECCCCEEccCccccc----cccCC-ce-----------EcceeceEEECCceEEcccc
Confidence 9999999999999999999999999999988644433 22222 22 22334558999999999999
Q ss_pred EEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779 184 SIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263 (300)
Q Consensus 184 ~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv 263 (300)
.|++++ .+.+.||+++.|...+.|+++|.||.+|.|..++.+.+.+.||++|.||+++.|.+...|+|++.|++.+.|
T Consensus 216 ~Idrga--~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v 293 (338)
T COG1044 216 TIDRGA--LDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGV 293 (338)
T ss_pred eecccc--ccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEeccccc
Confidence 999887 478999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEeeeceE
Q 040779 264 SQDVPKYSMVAGERAV 279 (300)
Q Consensus 264 ~~~v~~~~~~~G~Pa~ 279 (300)
.+++|++.++.|.|++
T Consensus 294 ~~~i~~~~~~gg~P~~ 309 (338)
T COG1044 294 MASITEPGYSGGIPAQ 309 (338)
T ss_pred ccccCCCceeccCCCc
Confidence 9999988899999995
No 6
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=100.00 E-value=2.4e-32 Score=246.69 Aligned_cols=236 Identities=25% Similarity=0.341 Sum_probs=167.4
Q ss_pred chhhhhhhccchhhHHHHHHHHHhh----cccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcE
Q 040779 26 GMSFLLLKVRRPCLSSLSTLFLRRL----STALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAK 101 (300)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~ 101 (300)
++.++....|+..|..+..++.... ...+++.+.+++++.++++++|+|+++|++++.||+++.|+++++|++++.
T Consensus 71 ~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~ 150 (343)
T PRK00892 71 GNALLVVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVK 150 (343)
T ss_pred CceEEEeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcE
Confidence 4455556666666665543332111 112445555555555555555555565655566666666666666665666
Q ss_pred ECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECC
Q 040779 102 LGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFRE 181 (300)
Q Consensus 102 Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~ 181 (300)
||++|.|++++.|.+++.||++|.|+++++|..+.+++..- .+. .+.......+.||+++.|++
T Consensus 151 IG~~~~I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~-----~~~-----------~~~~~~~g~v~Ig~~v~IGa 214 (343)
T PRK00892 151 IGADCRLHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFAND-----RGG-----------WVKIPQLGRVIIGDDVEIGA 214 (343)
T ss_pred ECCCCEeCCCeEEcCCCEECCCCEECCCCEEeccCcCcccC-----CCc-----------eeeccccccEEECCCcEECC
Confidence 66666666666665555566666666655555432222100 000 01122234588999999999
Q ss_pred CeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCC
Q 040779 182 HVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGS 261 (300)
Q Consensus 182 ~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~s 261 (300)
++.|.+++ ...+.||+++.++.++.|+++++||+++++.+++.+.++++||++++||.++.|.++++|++++++++++
T Consensus 215 ~~~I~~~~--~~~t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s 292 (343)
T PRK00892 215 NTTIDRGA--LDDTVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMS 292 (343)
T ss_pred CcEEecCc--cccceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCC
Confidence 99998766 3789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCC-CcEEeeeceE
Q 040779 262 VVSQDVPK-YSMVAGERAV 279 (300)
Q Consensus 262 vv~~~v~~-~~~~~G~Pa~ 279 (300)
.|.+|+|+ +.++.|.||+
T Consensus 293 ~v~~~i~~~~~~~~G~pa~ 311 (343)
T PRK00892 293 GVTKSIPEPGEYSSGIPAQ 311 (343)
T ss_pred eeCCccCCCCeEEEeecCc
Confidence 99999999 8999999997
No 7
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=100.00 E-value=6.9e-32 Score=234.10 Aligned_cols=203 Identities=51% Similarity=0.885 Sum_probs=159.9
Q ss_pred ECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779 72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH 151 (300)
Q Consensus 72 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~ 151 (300)
|+|.+.|++.+.|++++.|+|++.|++++.||+++.|++++.|.+++.||++|.|++++.|....
T Consensus 2 I~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~--------------- 66 (254)
T cd03351 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAP--------------- 66 (254)
T ss_pred cCCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcc---------------
Confidence 56666666667777777777777777777777777777777777777777777777777775410
Q ss_pred cEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCceecCc
Q 040779 152 AVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH 230 (300)
Q Consensus 152 ~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~ 230 (300)
+++.+. .+...+.||+++.+++++.|+..+... ..++||++++|+.+++|.+++.||+++.+++++.+.++
T Consensus 67 -------~~~~~~-g~~~~v~IG~~~~Ig~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~ 138 (254)
T cd03351 67 -------QDLKYK-GEPTRLEIGDNNTIREFVTIHRGTAQGGGVTRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGH 138 (254)
T ss_pred -------cceeec-CCCceEEECCCCEECCccEEeccccCCCCceEECCCCEECCCCEECCCCEECCCcEECCCccccCC
Confidence 000000 111235566666666666665544433 47899999999999999999999999999999999999
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCccc
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTE 297 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~ 297 (300)
++||++++|+.++.+.++++|+++++|+++|+|.+|+|++++++|+||+..+.+...+++.|++++.
T Consensus 139 v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~~~~~~~~~~~g~~~~g~~~~~ 205 (254)
T cd03351 139 VEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQDVPPYVIAAGNRARLRGLNLVGLKRRGFSREE 205 (254)
T ss_pred cEeCCCcEECCcceECCCcEECCCCEECcCCEEeeecCCCeEEEccCCeEeccceeceeecCCCHHH
Confidence 9999999999999999999999999999999999999999999999999888998888888998764
No 8
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=100.00 E-value=6.7e-32 Score=234.17 Aligned_cols=204 Identities=49% Similarity=0.847 Sum_probs=166.0
Q ss_pred ECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccc
Q 040779 72 IHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHH 151 (300)
Q Consensus 72 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~ 151 (300)
|+|+++|.+.+.|++++.|+|+++|++++.|++++.|++++.|.++++||++|.|++++.|......
T Consensus 1 i~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~------------- 67 (254)
T TIGR01852 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQD------------- 67 (254)
T ss_pred CCCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcc-------------
Confidence 4667777777777778888888888878888888888888888878888888888888777642100
Q ss_pred cEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccC-CceEECCCCEEccccEECcCcEeCCccEEccCceecCc
Q 040779 152 AVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSG-DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGH 230 (300)
Q Consensus 152 ~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~-~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~ 230 (300)
..+ ......+.||+++.|++++.|..+.... ..+.||+++.+..++.+.+++.||+++++++++.+.++
T Consensus 68 ---------~~~-~g~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~ 137 (254)
T TIGR01852 68 ---------LKY-KGERTELIIGDNNTIREFVTINRGTASGGGVTRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGH 137 (254)
T ss_pred ---------eee-cCccceEEECCCCEECCCCEECCcccCCCCcEEECCCCEECCCCEEccCCEECCCCEECCCCEECCC
Confidence 000 0111235667777777777776654433 58899999999999999999999999999999999999
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED 298 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~ 298 (300)
++||++++||.++.+.++++|+++++|+++++|++|+|++++++|+||++.+.++.++.+.+++++..
T Consensus 138 ~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~i~~~~~~~G~pa~~~~~~~~g~~~~~~~~~~~ 205 (254)
T TIGR01852 138 VEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKDVPPYGLVEGNRARLRGLNIVGLRRRGFSREDI 205 (254)
T ss_pred cEECCCcEEeccCEECCCcEECCCCEEeeeeeEeeecCCCcEEecCcCeecccceeeeecCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999888888998899988753
No 9
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.97 E-value=2.3e-29 Score=211.92 Aligned_cols=199 Identities=31% Similarity=0.461 Sum_probs=168.7
Q ss_pred ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779 64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG 143 (300)
Q Consensus 64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig 143 (300)
+.++++++|+|.++|++++.|+++++|++++.|+++++||+++.|++++.|.+++.||+++.|++++.|..+.+......
T Consensus 2 ~~i~~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~ 81 (205)
T cd03352 2 AKIGENVSIGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHPNVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDG 81 (205)
T ss_pred cEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEcCCCEECCCcEECCCCEEcCCCceeEecC
Confidence 45889999999999999999999999999999999999999999999999998899999999999888865211111000
Q ss_pred cceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEcc
Q 040779 144 CNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFAN 223 (300)
Q Consensus 144 ~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~ 223 (300)
+.. +.......+.|++++.+++++.+.... ...+.||+++.++.++.+.+++.+++++.+..
T Consensus 82 -----~~~-----------~~~~~~~~v~Ig~~~~Ig~~~~i~~~~--~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~ 143 (205)
T cd03352 82 -----GGW-----------VKIPQLGGVIIGDDVEIGANTTIDRGA--LGDTVIGDGTKIDNLVQIAHNVRIGENCLIAA 143 (205)
T ss_pred -----CcE-----------EEcCCcceEEECCCEEECCCCEEeccc--cCCeEECCCCEECCceEEeCCCEECCCCEECC
Confidence 000 011222346788888888888886554 46789999999999999999999999999999
Q ss_pred CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779 224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~ 280 (300)
++.+.+++.||++++|+.++.+.++++|+++++++++++|++|+|++.++.|+|||.
T Consensus 144 ~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v~~~~~~~~~~~G~pa~~ 200 (205)
T cd03352 144 QVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGVTSIVPPGEYVSGTPAQP 200 (205)
T ss_pred CCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEEeeECCCCCEEEeecCch
Confidence 999999999999999999999999999999999999999999999999999999985
No 10
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=1.3e-27 Score=211.11 Aligned_cols=196 Identities=24% Similarity=0.330 Sum_probs=163.7
Q ss_pred CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
.+...+|+.+++|+.++.|+|++.+.+++.||++|.|||+|.|. |+.|++++.|.++|.|. +++||++|.||+.+.++
T Consensus 259 dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LR 336 (460)
T COG1207 259 DPATTYIRGDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLR 336 (460)
T ss_pred CCCeEEEcCcEEECCceEEecCcEEeeeEEECCceEECCCcEEE-eeEEcCCCEEEecceee-ccEecCCcccCCccccC
Confidence 34456777888888888899998888888899999999998888 78888888888888888 88888888888888888
Q ss_pred cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779 134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC 213 (300)
Q Consensus 134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v 213 (300)
. .+.|+++++||.++.+. ++.|+.++...|-++||| +.|+.++
T Consensus 337 P----g~~L~~~~hIGNFVEvK--------------------------~a~ig~gsKa~HLtYlGD-------A~iG~~~ 379 (460)
T COG1207 337 P----GAVLGADVHIGNFVEVK--------------------------KATIGKGSKAGHLTYLGD-------AEIGENV 379 (460)
T ss_pred C----cCcccCCCeEeeeEEEe--------------------------cccccCCccccceeeecc-------ceecCCc
Confidence 7 48888888888888772 334444455567788887 6778888
Q ss_pred EeCCccEEccCce-ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhc
Q 040779 214 KIGNYNIFANNTL-LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR 291 (300)
Q Consensus 214 ~Ig~~~~i~~~~~-v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~ 291 (300)
.||.+++..+.-- -+..++||+++|||+++.+..+++||+++.+++||+|++|+|++++..+ |.++.++++|++.
T Consensus 380 NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStIT~DVp~~aLai~---RarQ~~~egw~~~ 455 (460)
T COG1207 380 NIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPEGALAIS---RARQTNKEGWVRK 455 (460)
T ss_pred eeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceEcccCCCCceeEe---ecceeeccccccc
Confidence 8888888766543 4456999999999999999999999999999999999999999999995 7789999999887
No 11
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.95 E-value=3.7e-26 Score=190.53 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=131.5
Q ss_pred CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
......+++.+.++++++|+|+++|.+++.||++|+|++++.|.. ..|++++.|++++.|. ++.|++++.|++++.|.
T Consensus 6 ~~~~~~~~~~v~ig~~~~I~~~a~i~~~~~Ig~~~~I~~~~~I~~-~~Ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~I~ 83 (193)
T cd03353 6 DPETTYIDGDVEIGVDVVIDPGVILEGKTVIGEDCVIGPNCVIKD-STIGDGVVIKASSVIE-GAVIGNGATVGPFAHLR 83 (193)
T ss_pred CCCeEEEcCCeEECCCcEECCCCEEeCcCEECCCCEECCCcEEeC-CEECCCCEEcCCeEEE-eeEECCCCEECCccEEc
Confidence 345566777888888888888888888888888888888888884 5888888888888887 77888888888877776
Q ss_pred cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779 134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC 213 (300)
Q Consensus 134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v 213 (300)
. .+.|++++.+++++.+.. ..|++++.+ +..+.+ .++.|++++
T Consensus 84 ~----~~~Ig~~~~Ig~~~~i~~--------------s~ig~~~~i------------------~~~~~i-~~~~Ig~~~ 126 (193)
T cd03353 84 P----GTVLGEGVHIGNFVEIKK--------------STIGEGSKA------------------NHLSYL-GDAEIGEGV 126 (193)
T ss_pred C----ccEECCCCEECCcEEEec--------------ceEcCCCEe------------------ccccee-cccEECCCC
Confidence 4 266666666666655510 122222222 211111 123333333
Q ss_pred EeCCccEEccCcee-cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeec
Q 040779 214 KIGNYNIFANNTLL-AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGER 277 (300)
Q Consensus 214 ~Ig~~~~i~~~~~v-~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~P 277 (300)
.+|.++.+...... ..+++|||++|+|.++.+.++++|+++++|+++++|++|+|+++++.|.|
T Consensus 127 ~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~~v~~~~~v~~~~ 191 (193)
T cd03353 127 NIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITKDVPPGALAIARA 191 (193)
T ss_pred EEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEEccccCCCCEEEecc
Confidence 33333333222211 24799999999999999999999999999999999999999999999976
No 12
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.95 E-value=1.8e-26 Score=216.66 Aligned_cols=187 Identities=19% Similarity=0.263 Sum_probs=113.3
Q ss_pred ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779 59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG 138 (300)
Q Consensus 59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~ 138 (300)
.+++++.|++++.|+++++|.+++.||+++.|++++.|. ++.|+++|.|++++.|. ++.||++|.|++++.|..
T Consensus 257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~---- 330 (451)
T TIGR01173 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLE-GSEIGEGCDVGPFARLRP---- 330 (451)
T ss_pred EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEe-cccccCCcEECCeeEECC----
Confidence 445555555556666666655555566666666555555 45555555555555555 455555555555555543
Q ss_pred ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCc
Q 040779 139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNY 218 (300)
Q Consensus 139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~ 218 (300)
.+.|++++.|++++.+. ...||+ ++.++..+.++ ++.|++++.||.+
T Consensus 331 ~~~i~~~~~Ig~~~~i~--------------~~~ig~------------------~~~i~~~~~i~-~~~Ig~~~~ig~~ 377 (451)
T TIGR01173 331 GSVLGAGVHIGNFVETK--------------NARIGK------------------GSKAGHLSYLG-DAEIGSNVNIGAG 377 (451)
T ss_pred CCEECCCcEEccceeec--------------CcEECC------------------CcEecceeeEe-eeEEcCCcEECCC
Confidence 24455555555444441 011222 22222222221 2333444444444
Q ss_pred cEEccCceec-CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779 219 NIFANNTLLA-GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN 284 (300)
Q Consensus 219 ~~i~~~~~v~-~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~ 284 (300)
+++....... .+++||+++|||.++.+.++++|+++++|+++++|++|+|+++++.|.|++....+
T Consensus 378 ~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~v~~~~~~~~~~~~~~~~~ 444 (451)
T TIGR01173 378 TITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTVTKDVPEGALAISRARQRNIEG 444 (451)
T ss_pred eEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEECccCCCCcEEEccCceeeccc
Confidence 4333322222 26999999999999999999999999999999999999999999999999754443
No 13
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.94 E-value=1.3e-25 Score=194.46 Aligned_cols=205 Identities=25% Similarity=0.380 Sum_probs=157.5
Q ss_pred CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779 69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII 148 (300)
Q Consensus 69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i 148 (300)
...|+|.++|++.+.+++++.|+++++|+.++.||++++|++++.|+.++.||++|.|.+++.|+. .+.||++|.|
T Consensus 99 ~~~I~~~A~i~~~A~i~~~~~ig~~~vI~~~v~IG~~~~I~~~~vIg~~~~IG~~~~i~~~v~I~~----~~~IG~~v~I 174 (338)
T COG1044 99 AAGIHPTAVIDPTATIGKNVSIGPNVVIGAGVVIGENVVIGAGAVIGENVKIGDGTVIHPNVTIYH----NVVIGNNVII 174 (338)
T ss_pred ccccCccccccCcCccCCCCccCCCeEECCCCEECCCcEECCCCEECCCcEECCCcEEcCCCEEec----CcEECCceEE
Confidence 345666666666677777777777777777777777777777777777888888888888888876 3788888888
Q ss_pred ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC----cEeCCccEEccC
Q 040779 149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD----CKIGNYNIFANN 224 (300)
Q Consensus 149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~----v~Ig~~~~i~~~ 224 (300)
.+++.|+... |.| ..+.++ +..+ ..-..++|||++.|+.+++|.++ +.|++++.|.+.
T Consensus 175 ~~GavIG~dg--Fg~-----------a~~~~g-~~Ki----~q~g~V~Igd~VeIGanT~Idrga~~dTvIg~~~kIdN~ 236 (338)
T COG1044 175 HSGAVIGADG--FGY-----------AGTAIG-WVKI----PQIGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDNL 236 (338)
T ss_pred CCCCEEccCc--ccc-----------ccccCC-ceEc----ceeceEEECCceEEcccceeccccccCceecCCcEEcce
Confidence 8888886432 111 111222 1222 12468889999999999999887 999999999999
Q ss_pred ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEecChhhhhhcCCCcc
Q 040779 225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGLNLEGLRRRGFNVT 296 (300)
Q Consensus 225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~ 296 (300)
+.+.++|+||++|.|.+++.+...++||+++++|+.+.+... +.+++.+.+.-...+.+..+. ...+++..
T Consensus 237 vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~~v~~~i~~~~-~~gg~P~~ 309 (338)
T COG1044 237 VQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARSGVMASITEPG-YSGGIPAQ 309 (338)
T ss_pred eEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEecccccccccCCCc-eeccCCCc
Confidence 999999999999999999999999999999999999999997 599999988666666666655 33556554
No 14
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.94 E-value=4.3e-25 Score=207.54 Aligned_cols=215 Identities=20% Similarity=0.347 Sum_probs=138.6
Q ss_pred hhhhhhccchhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCc-EEcCCCEECCCCEECCCCEECCCcEECCCC
Q 040779 28 SFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTS-IVHPNAIIGQGVSVGPFCTIGSAAKLGDGC 106 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~-~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~ 106 (300)
.|+....|+.++.... +++......+. .....++++.+ +|++++.|++++.|++++.|+++++||++|
T Consensus 225 ~~~~i~~~~~~~~a~~-~l~~~~~~~~~----------~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~ 293 (459)
T PRK14355 225 EIMGVNDRAQLAEAAR-VLRRRINRELM----------LAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGC 293 (459)
T ss_pred HhcCCCCHHHHHHHHH-HHHHHHHHHHH----------hCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCC
Confidence 4777777877776643 33332211110 01123455543 466666666666666666666666777777
Q ss_pred EECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEe
Q 040779 107 LLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIH 186 (300)
Q Consensus 107 ~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~ 186 (300)
.|++++.|. ++.||++|.|++++.+.+ ++|++++.|++++.+.. ...|++++.++.++.+
T Consensus 294 ~I~~~~~I~-~~~Ig~~~~I~~~~~i~~-----~~i~~~~~ig~~~~i~~-------------~~~i~~~~~ig~~~~~- 353 (459)
T PRK14355 294 TIEQGVVIK-GCRIGDDVTVKAGSVLED-----SVVGDDVAIGPMAHLRP-------------GTELSAHVKIGNFVET- 353 (459)
T ss_pred EECCCCEEe-CCEEcCCCEECCCeEEeC-----CEECCCCEECCCCEECC-------------CCEeCCCCEECCCccc-
Confidence 777777775 577777777777777654 66777777776666621 1345555555554433
Q ss_pred cCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-------cCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779 187 RSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-------AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259 (300)
Q Consensus 187 ~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-------~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~ 259 (300)
..+.||+++.+...+.++ ++.||+++.|+.++.+ ..++.||+++++|.++.+.++++|+++++|++
T Consensus 354 ------~~~~ig~~~~~~~~~~ig-~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a 426 (459)
T PRK14355 354 ------KKIVMGEGSKASHLTYLG-DATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAA 426 (459)
T ss_pred ------cCCEECCCceeeeecccc-CCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECC
Confidence 344455555554433332 3444444444444432 34689999999999999999999999999999
Q ss_pred CCEECCCCCCCcEEeeeceEE
Q 040779 260 GSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 260 ~svv~~~v~~~~~~~G~Pa~~ 280 (300)
+|+|.+|+|+++++.|.|+..
T Consensus 427 ~s~v~~~v~~~~~~~~~~~~~ 447 (459)
T PRK14355 427 GTTVTKDVPPDSLAIARSPQV 447 (459)
T ss_pred CCEEcccCCCCcEEEecccee
Confidence 999999999999999976644
No 15
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.94 E-value=2.3e-25 Score=193.22 Aligned_cols=178 Identities=18% Similarity=0.271 Sum_probs=143.6
Q ss_pred CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeC------------CcEEC
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFG------------NTELG 121 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~------------~~~IG 121 (300)
+++.+.|++++++++++.|+|+++|++++.||+++.|++++.|.+++.||+++.|++++.|++ +++||
T Consensus 2 I~~~a~I~~~a~ig~~~~I~p~~~I~~~v~IG~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG 81 (254)
T cd03351 2 IHPTAIVDPGAKIGENVEIGPFCVIGPNVEIGDGTVIGSHVVIDGPTTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIG 81 (254)
T ss_pred cCCCCEECCCCEECCCCEECCCcEECCCCEECCCCEECCCcEEeCCeEECCCCEEecceeecCcccceeecCCCceEEEC
Confidence 577889999999999999999999999999999999999999998999999998888888864 34455
Q ss_pred CCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCC
Q 040779 122 DHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNN 201 (300)
Q Consensus 122 ~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~ 201 (300)
++|.|++++.|.. .. ......++||+++.+++++.| .+++.||+++
T Consensus 82 ~~~~Ig~~~~I~~----------------------~~------~~~~~~~~IG~~~~I~~~~~I------~~~~~IG~~~ 127 (254)
T cd03351 82 DNNTIREFVTIHR----------------------GT------AQGGGVTRIGNNNLLMAYVHV------AHDCVIGNNV 127 (254)
T ss_pred CCCEECCccEEec----------------------cc------cCCCCceEECCCCEECCCCEE------CCCCEECCCc
Confidence 5555555544433 11 001123667777777777776 5788999999
Q ss_pred EEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC
Q 040779 202 LIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV 267 (300)
Q Consensus 202 ~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v 267 (300)
+++.++.+.+++.||++++++.++.+..+++||++++|+++++|.++ |++++++.+......++
T Consensus 128 ~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~~~~~~~~ 191 (254)
T cd03351 128 ILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGVVQD--VPPYVIAAGNRARLRGL 191 (254)
T ss_pred EECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEEeee--cCCCeEEEccCCeEecc
Confidence 99999999999999999999999999999999999999999999986 68899998876554443
No 16
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.93 E-value=2.4e-24 Score=202.41 Aligned_cols=183 Identities=19% Similarity=0.291 Sum_probs=126.3
Q ss_pred cCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCc
Q 040779 60 DKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQ 139 (300)
Q Consensus 60 i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~ 139 (300)
+.+.+.+++++.|++++.|.+++.||+++.|++++.|. ++.|++++.|++++.|. ++.||+++.|++++.|.. .
T Consensus 262 ~~~~~~ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~----~ 335 (456)
T PRK09451 262 LRGTLTHGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVE-DANLGAACTIGPFARLRP----G 335 (456)
T ss_pred ECCcEEECCCCEEcCCeEEecCcEECCCCEECCCceEe-cCEEcCCCEEcCCEEEe-CCccCCCcEecCceEEeC----C
Confidence 34455677777777777777777777777777777775 67777777777777776 677777777777777754 2
Q ss_pred eeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCcc
Q 040779 140 TVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYN 219 (300)
Q Consensus 140 ~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~ 219 (300)
+.+++++.|++++.+.. ..| ++++.++..+.+ .++.|++++.||.++
T Consensus 336 ~~i~~~~~ig~~~~i~~--------------~~i------------------~~~~~~~~~~~~-g~~~ig~~~~ig~~~ 382 (456)
T PRK09451 336 AELAEGAHVGNFVEMKK--------------ARL------------------GKGSKAGHLTYL-GDAEIGDNVNIGAGT 382 (456)
T ss_pred CEECCCceeccceeeec--------------eee------------------CCCCccCccccc-cccEECCCCEEcCCe
Confidence 55666666666555410 122 223333333332 134455555555555
Q ss_pred EEccCceecC-ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE-eeeceEEE
Q 040779 220 IFANNTLLAG-HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV-AGERAVLR 281 (300)
Q Consensus 220 ~i~~~~~v~~-~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~-~G~Pa~~~ 281 (300)
++........ +++|||+++||.++.+.++++|+++++|+++|+|++|+|+++++ .|.|++..
T Consensus 383 ~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v~~~v~~~~~~~~~~~~~~~ 446 (456)
T PRK09451 383 ITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTVTRDVAENELVISRVPQRHI 446 (456)
T ss_pred EEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEEccccCCCCEEEeccCceec
Confidence 4444333333 58999999999999999999999999999999999999999887 56899843
No 17
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.93 E-value=2.3e-24 Score=187.03 Aligned_cols=186 Identities=18% Similarity=0.268 Sum_probs=141.6
Q ss_pred CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
++++++|+++++|++++.|+|+++|.+++.|++++.|++++.|.+++.||+++.|++++.|++..... ...+.
T Consensus 1 i~~~a~I~~~a~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~--~~~g~----- 73 (254)
T TIGR01852 1 IHPTAIIEPGAEIGENVEIGPFCIVGPGVKIGDGVELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDL--KYKGE----- 73 (254)
T ss_pred CCCCCEeCCCCEECCCCEECCCCEECCCCEECCCCEECCCCEEeeeEEECCCCEECCCcEeCCCCcce--eecCc-----
Confidence 36788899999999999999999999999999999999999999899999999998888887421100 00000
Q ss_pred cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779 134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC 213 (300)
Q Consensus 134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v 213 (300)
...+.||+++.|++++.|+... ......+.||+++.+++++.+ .++++||++++++.++.+.+++
T Consensus 74 ---~~~v~IG~~~~I~~~~~I~~~~------~~~~~~~~IG~~~~I~~~~~I------~~~~~Ig~~~~i~~~~~i~~~~ 138 (254)
T TIGR01852 74 ---RTELIIGDNNTIREFVTINRGT------ASGGGVTRIGNNNLLMAYSHI------AHDCVVGNHVILANNATLAGHV 138 (254)
T ss_pred ---cceEEECCCCEECCCCEECCcc------cCCCCcEEECCCCEECCCCEE------ccCCEECCCCEECCCCEECCCc
Confidence 0124444444444444443211 001123566666666666666 5788999999999999999999
Q ss_pred EeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779 214 KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263 (300)
Q Consensus 214 ~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv 263 (300)
.||++++++.++.+..+++|+++++|+++++|.++ |++++++.+....
T Consensus 139 ~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V~~~--i~~~~~~~G~pa~ 186 (254)
T TIGR01852 139 EVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAVSKD--VPPYGLVEGNRAR 186 (254)
T ss_pred EECCCcEEeccCEECCCcEECCCCEEeeeeeEeee--cCCCcEEecCcCe
Confidence 99999999999999999999999999999999975 8999999886443
No 18
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.93 E-value=1.9e-24 Score=187.88 Aligned_cols=184 Identities=18% Similarity=0.276 Sum_probs=142.0
Q ss_pred cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779 53 ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV 132 (300)
Q Consensus 53 ~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i 132 (300)
.+++++.|++.++|++++.|+|+++|++++.||+++.|++++.|.++++||++|.|++++.|++..+-.+.
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~--------- 74 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKY--------- 74 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecc---------
Confidence 47899999999999999999999999999999999999999999999999999999988888753211000
Q ss_pred ccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC
Q 040779 133 GDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD 212 (300)
Q Consensus 133 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~ 212 (300)
......+.||+++.|++++.|.... ......+.||+++.++.++.| .+++.||+++.++.++.+..+
T Consensus 75 -~g~~~~v~IG~~~~I~e~~~I~~~~------~~~~~~t~IG~~~~I~~~~~I------~h~~~IG~~v~i~~~~~i~g~ 141 (262)
T PRK05289 75 -KGEPTRLVIGDNNTIREFVTINRGT------VQGGGVTRIGDNNLLMAYVHV------AHDCVVGNHVILANNATLAGH 141 (262)
T ss_pred -cCCCCeEEECCCCEECCCeEEeccc------ccCCCeeEECCceEECCCCEE------CCeEEECCCeEECCccccccc
Confidence 0001224555555555555553221 011223556666666666655 678999999999999999999
Q ss_pred cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
+.||++++++.++.+..+++||++++++++++|.++ |++++++.+.
T Consensus 142 v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~gs~V~~d--i~~~~~~~G~ 187 (262)
T PRK05289 142 VEVGDYAIIGGLTAVHQFVRIGAHAMVGGMSGVSQD--VPPYVLAEGN 187 (262)
T ss_pred cccCCcEEEeecceecCCCEECCCCEEeeecceecc--CCCCeEEecc
Confidence 999999999999999999999999999999999985 7888888653
No 19
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.93 E-value=2.8e-24 Score=185.39 Aligned_cols=182 Identities=16% Similarity=0.231 Sum_probs=140.2
Q ss_pred CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
+++++.|++.++|++++.|+|+++|++++.||+++.|++++.|.+++.||+++.|++++.|++... +..+..
T Consensus 2 Ihp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq--------~~~~~g 73 (255)
T PRK12461 2 IHPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQ--------DFTYKG 73 (255)
T ss_pred cCCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCc--------cccccC
Confidence 678899999999999999999999999999999999999999998899999888888877764211 000110
Q ss_pred cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCc
Q 040779 134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDC 213 (300)
Q Consensus 134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v 213 (300)
....+.||+++.|++++.|...+ .....++||+++.+.++++| ++++.||++++++.++.+..++
T Consensus 74 --~~~~v~IG~~~~I~e~vtI~~gt-------~~g~~t~IG~~~~i~~~~~I------~hd~~IG~~v~i~~~~~i~g~v 138 (255)
T PRK12461 74 --EESRLEIGDRNVIREGVTIHRGT-------KGGGVTRIGNDNLLMAYSHV------AHDCQIGNNVILVNGALLAGHV 138 (255)
T ss_pred --ccceeEECCceEECCccEEecCc-------ccCCcEEEcccceeccCcEE------CCCCEECCCcEECCCCccCCce
Confidence 12235566666666666664321 01122445555555544444 7899999999999999999999
Q ss_pred EeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 214 KIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 214 ~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
.||++++++.++.+..+++||++++++++++|.++ +++++++.++
T Consensus 139 ~Igd~a~Ig~~a~V~~~~~IG~~a~Vg~gs~V~~d--Vpp~~i~~G~ 183 (255)
T PRK12461 139 TVGDRAIISGNCLVHQFCRIGALAMMAGGSRISKD--VPPYCMMAGH 183 (255)
T ss_pred EECCCeEEeCCCEECCCCEECCCcEECCCceEecc--CCCCeEEecC
Confidence 99999999999999999999999999999999987 7999998765
No 20
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.92 E-value=1.2e-23 Score=190.10 Aligned_cols=208 Identities=26% Similarity=0.381 Sum_probs=166.5
Q ss_pred CCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceE
Q 040779 68 SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI 147 (300)
Q Consensus 68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ 147 (300)
..+.|+|.+.|.+++.|++++.|++++.|++++.||+++.|++++.|++++.||++|.|++++.|.. .+.||++|.
T Consensus 99 ~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~----~~~Ig~~~~ 174 (343)
T PRK00892 99 PAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGADCRLHANVTIYH----AVRIGNRVI 174 (343)
T ss_pred cCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCCCEeCCCeEEcC----CCEECCCCE
Confidence 3567888888888888999999999999999999999999999999999999999999999999987 378999999
Q ss_pred EccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC----cCcEeCCccEEcc
Q 040779 148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA----HDCKIGNYNIFAN 223 (300)
Q Consensus 148 ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~----~~v~Ig~~~~i~~ 223 (300)
|++++.|+.....+. ... +. ...+.. ...+.||+++.|+.+++|. .+++||+++.+..
T Consensus 175 I~~~~~Ig~~~f~~~--~~~------~~------~~~~~~----~g~v~Ig~~v~IGa~~~I~~~~~~~t~Ig~~~~i~~ 236 (343)
T PRK00892 175 IHSGAVIGSDGFGFA--NDR------GG------WVKIPQ----LGRVIIGDDVEIGANTTIDRGALDDTVIGEGVKIDN 236 (343)
T ss_pred ECCCCEEeccCcCcc--cCC------Cc------eeeccc----cccEEECCCcEECCCcEEecCccccceeCCCCEEeC
Confidence 999999975432221 111 11 111100 2366777777777777774 5789999999999
Q ss_pred CceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEecChhhhhhcCCCccc
Q 040779 224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGLNLEGLRRRGFNVTE 297 (300)
Q Consensus 224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~ 297 (300)
.+.+.++++||+++++++++.+..+++||+++++++++.|..+ +.+++++++...-.+.++.......|+++..
T Consensus 237 ~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v~~~i~~~~~~~~G~pa~~ 312 (343)
T PRK00892 237 LVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGVTKSIPEPGEYSSGIPAQP 312 (343)
T ss_pred CeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCeeCCccCCCCeEEEeecCch
Confidence 9999999999999999999999999999999999999999998 6999999987554555544333345666554
No 21
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=3e-23 Score=196.10 Aligned_cols=198 Identities=18% Similarity=0.279 Sum_probs=123.0
Q ss_pred ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779 57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL 136 (300)
Q Consensus 57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~ 136 (300)
..+|++.+.|++++.|+|++.|.+++.||++|.|++++.|. ++.|++++.|.. +.+. ++.|++++.|++++.+..
T Consensus 265 ~~~i~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~-~~~Ig~~~~i~~-~~~~-~~iIg~~~~Ig~~~~i~~-- 339 (482)
T PRK14352 265 TTWIDVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLT-DVTVGEGASVVR-THGS-ESEIGAGATVGPFTYLRP-- 339 (482)
T ss_pred eEEEeCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEe-cCEECCCCEEee-eeee-cCEEcCCCEECCCeEecC--
Confidence 44566666677777777777777667777777777777775 566666666653 4443 666666666666666643
Q ss_pred CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeC
Q 040779 137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIG 216 (300)
Q Consensus 137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig 216 (300)
.++|++++.++.++.+. ...|++++.++..+.+ .+ +.|++++.||
T Consensus 340 --~~vIg~~~~ig~~~~~~--------------~~~I~~~~~i~~~~~i-------~~------------~~Ig~~~~IG 384 (482)
T PRK14352 340 --GTVLGEEGKLGAFVETK--------------NATIGRGTKVPHLTYV-------GD------------ADIGEHSNIG 384 (482)
T ss_pred --CcEEcCCCEECCcEEEc--------------ccEECCCcEEccCcee-------cc------------cEECCCcEEC
Confidence 25556666655554431 0122222222221111 12 2333333333
Q ss_pred CccEEccCce-ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE-eeeceE-EEecChhhhhhcCC
Q 040779 217 NYNIFANNTL-LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV-AGERAV-LRGLNLEGLRRRGF 293 (300)
Q Consensus 217 ~~~~i~~~~~-v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~-~G~Pa~-~~~~~~~~~~~~~~ 293 (300)
.++.+..... ..+++.||+++++|.++.+.++++|+++++|+++++|++|+|+++++ .|.|++ ++++ .+.++.+.
T Consensus 385 ~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~v~~~~~~~~~~p~~~~~~~--~~~~~~~~ 462 (482)
T PRK14352 385 ASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIREDVPPGALAVSEGPQRNIEGW--VQRKRPGT 462 (482)
T ss_pred CCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCCCCCCcEEEecccccccccc--cccccccc
Confidence 3333322111 13468999999999999999999999999999999999999999865 599998 4443 33444555
Q ss_pred Ccc
Q 040779 294 NVT 296 (300)
Q Consensus 294 ~~~ 296 (300)
+++
T Consensus 463 ~~~ 465 (482)
T PRK14352 463 PAA 465 (482)
T ss_pred hhh
Confidence 544
No 22
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.92 E-value=5.2e-24 Score=174.82 Aligned_cols=187 Identities=17% Similarity=0.245 Sum_probs=161.3
Q ss_pred ccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcE
Q 040779 52 TALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131 (300)
Q Consensus 52 ~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~ 131 (300)
..+||.+.|+|.|+|++++.|+|+|+|+++++|++++.|+++++|.+.++||+++.|.+.+.|+...+- .
T Consensus 4 ~~IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQd----------l 73 (260)
T COG1043 4 AKIHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQD----------L 73 (260)
T ss_pred cccCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcc----------c
Confidence 458999999999999999999999999999999999999999999999999999999998888753331 1
Q ss_pred EccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECc
Q 040779 132 VGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAH 211 (300)
Q Consensus 132 i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~ 211 (300)
=+.+.+....||++|.|.+++++.+.+ ........||+++.+-.++++ .++|.||++|.+..++++..
T Consensus 74 Kykge~T~l~IG~~n~IRE~vTi~~GT------~~g~g~T~IGdnnl~May~HV------AHDC~iGn~~ilaNnatLAG 141 (260)
T COG1043 74 KYKGEPTRLIIGDNNTIREFVTIHRGT------VQGGGVTRIGDNNLIMAYAHV------AHDCVIGNNCILANNATLAG 141 (260)
T ss_pred ccCCCceEEEECCCCeEeeEEEEeccc------cCCceeEEECCCCEEEEeeee------eccceecCcEEEecCCeEec
Confidence 111224457888999999999886553 234456889999988888888 78999999999999999999
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCE
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSV 262 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~sv 262 (300)
++.||++++++..+-+...++||+++++|+.+-|..+ ++|++++.++--
T Consensus 142 HV~igD~aiiGG~saVHQFvrIG~~amiGg~S~v~~D--VpPy~~~~Gn~a 190 (260)
T COG1043 142 HVEVGDYAIIGGLSAVHQFVRIGAHAMIGGLSAVSQD--VPPYVIASGNHA 190 (260)
T ss_pred cEEECCEEEEcCcceEEEEEEEcchheeccccccccC--CCCeEEecCCcc
Confidence 9999999999999999999999999999999999975 899998887643
No 23
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=2.1e-23 Score=195.85 Aligned_cols=193 Identities=24% Similarity=0.391 Sum_probs=132.5
Q ss_pred eECCCc-EEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779 71 FIHPTS-IVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG 149 (300)
Q Consensus 71 ~I~~~~-~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig 149 (300)
++++.+ .+.+++.|++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|+ .+.+.+ +.|++++.|+
T Consensus 251 ~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~-~~~I~~~~~I~-~~~i~~-----~~ig~~~~I~ 323 (450)
T PRK14360 251 FIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIE-NSQIGENVTVL-YSVVSD-----SQIGDGVKIG 323 (450)
T ss_pred EecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEE-EEEEcCCCEEe-eeEEee-----ccccCCcEEC
Confidence 455553 466666677777777777777677777777777777776 66777777774 344444 6777777777
Q ss_pred cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceec-
Q 040779 150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA- 228 (300)
Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~- 228 (300)
+++.|.. ...||+++.++.++.+.. +.+++++.|+.++++ ..+.|++++.||.++++.....+.
T Consensus 324 ~~~~I~~-------------~~~Ig~~~~Ig~~~~i~~-~~i~~~~~i~~~~~~-~~~~i~~~~~iG~~~~~~~~~~~~~ 388 (450)
T PRK14360 324 PYAHLRP-------------EAQIGSNCRIGNFVEIKK-SQLGEGSKVNHLSYI-GDATLGEQVNIGAGTITANYDGVKK 388 (450)
T ss_pred CCCEECC-------------CCEEeCceEECCCEEEec-cccCCCcEeccceec-CCceecCCcEECccceecccccccc
Confidence 7777732 256667777776666632 233344444443333 234445555555554444332222
Q ss_pred CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL 285 (300)
Q Consensus 229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~ 285 (300)
.+++||++++||.++++.++++|+++++|+++++|++|+|+++++.|+|++..+.++
T Consensus 389 ~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~g~~~~~~~~~~ 445 (450)
T PRK14360 389 HRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITKDVPDNSLAIARSRQVIKENW 445 (450)
T ss_pred CCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECccCCCCCEEEeccceeeccch
Confidence 379999999999999999999999999999999999999999999999998664444
No 24
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.92 E-value=1.7e-23 Score=196.37 Aligned_cols=188 Identities=20% Similarity=0.352 Sum_probs=127.4
Q ss_pred eECCC-cEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779 71 FIHPT-SIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG 149 (300)
Q Consensus 71 ~I~~~-~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig 149 (300)
.++|. ++|++++.||+++.|++++.|.+++.||++|.|++++.|. ++.||++|.|.. +.+.. +.|++++.++
T Consensus 244 ~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~-~~v~~-----sii~~~~~ig 316 (448)
T PRK14357 244 ILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIR-SECEK-----SVIEDDVSVG 316 (448)
T ss_pred EeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEee-eEEEE-----EEEeCCcEEC
Confidence 34443 4666667777777777777777677777777777777776 577777777743 34443 6667777777
Q ss_pred cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccc-----cEECcCcEeCCccEEccC
Q 040779 150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGS-----CHIAHDCKIGNYNIFANN 224 (300)
Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~-----~~i~~~v~Ig~~~~i~~~ 224 (300)
+++.++. ...||+++.+++++.+. .+.||+++.+... +.|++++.||.++.+...
T Consensus 317 ~~~~i~~-------------~~~ig~~~~Ig~~~~i~-------~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~ 376 (448)
T PRK14357 317 PFSRLRE-------------GTVLKKSVKIGNFVEIK-------KSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNY 376 (448)
T ss_pred CCcEECC-------------cccccCCcEecCceeee-------ccEEcCCcCccccccccCcEECCCcEECCCcccccc
Confidence 6666621 14566666666655542 2344444443333 334444444444433322
Q ss_pred ce-ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779 225 TL-LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL 285 (300)
Q Consensus 225 ~~-v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~ 285 (300)
.. ...+++|||+++||.++.|.++++|+++++|+++++|.+|+|+++++.|.|+++...+.
T Consensus 377 ~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~v~~~~~~~g~~~~~~~~~~ 438 (448)
T PRK14357 377 DGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITEDVPPYSLALGRARQIVKEGW 438 (448)
T ss_pred cccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCcCCCCcEEEccccEEeccCc
Confidence 22 23579999999999999999999999999999999999999999999999998766655
No 25
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=3e-23 Score=195.14 Aligned_cols=190 Identities=20% Similarity=0.381 Sum_probs=135.4
Q ss_pred ceECCC-cEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEE
Q 040779 70 SFIHPT-SIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNII 148 (300)
Q Consensus 70 ~~I~~~-~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~i 148 (300)
.+|+|. ++|++++.||+++.|++++.|.+++.||++|.|++++.|. ++.||++|.|++ +.+.+ +.||+++.|
T Consensus 253 ~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~~-----~~ig~~~~I 325 (458)
T PRK14354 253 TIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIEE-----SKVGDNVTV 325 (458)
T ss_pred EEeCCCeEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEeC-----CEECCCcEE
Confidence 345654 5677777777777777777777777777777777777776 677778887774 44444 777777777
Q ss_pred ccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceec
Q 040779 149 GHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLA 228 (300)
Q Consensus 149 g~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~ 228 (300)
++++.+.. ...||+++.+++++.+. ++.|++++.+...+.+ .++.||+++.+++++.+.
T Consensus 326 g~~~~i~~-------------~~~Ig~~~~i~~~~~i~-------~~~i~~~~~i~~~~~~-~~~~ig~~~~ig~~~~~~ 384 (458)
T PRK14354 326 GPFAHLRP-------------GSVIGEEVKIGNFVEIK-------KSTIGEGTKVSHLTYI-GDAEVGENVNIGCGTITV 384 (458)
T ss_pred CCceEecC-------------CCEEeCCcEECCceEEe-------eeEECCCCEecceeee-cCcccCCceEEcCceeec
Confidence 77777632 24566677776666663 3444444444444333 234555555555554442
Q ss_pred -------CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhh
Q 040779 229 -------GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRR 290 (300)
Q Consensus 229 -------~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~ 290 (300)
.++.||+++++|.++.+.++++|+++++|+++|+|.+|+|+++++.|.|+ +.|++.|..
T Consensus 385 ~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~~~~~~~~~~~~~---~~~~~~~~~ 450 (458)
T PRK14354 385 NYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKDVPEDALAIARAR---QVNKEGYVK 450 (458)
T ss_pred ccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCCCCCCCEEEeccc---eecccchhh
Confidence 26999999999999999999999999999999999999999999999877 455555543
No 26
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=8.2e-23 Score=192.70 Aligned_cols=189 Identities=19% Similarity=0.281 Sum_probs=126.1
Q ss_pred EcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeee
Q 040779 78 VHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVK 157 (300)
Q Consensus 78 I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~ 157 (300)
+.+.+.||+++.|++++.|.+++.||+++.|+++|.|. +++||++|.|++++++.+ +.||+++.+++++.+..
T Consensus 267 i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~~-----~~ig~~~~ig~~~~i~~- 339 (481)
T PRK14358 267 IEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLEG-----AEVGAGSDVGPFARLRP- 339 (481)
T ss_pred ccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceecC-----CeEeCceEECCccEEcC-
Confidence 35566666666666666666666666666666666664 566677777776666654 66666666666666621
Q ss_pred ecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-cCceEECCC
Q 040779 158 CQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-AGHVVVEDY 236 (300)
Q Consensus 158 ~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-~~~v~Ig~~ 236 (300)
...||+++.+++++.+ .++.+..++.+|..+.+ .+++|++++.||.++.+...... .+++.||++
T Consensus 340 ------------~~~Ig~~~~Ig~~~~i-~~~~i~~~~~ig~~~~~-~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~ 405 (481)
T PRK14358 340 ------------GTVLGEGVHIGNFVET-KNARLDAGVKAGHLAYL-GDVTIGAETNVGAGTIVANFDGVNKHQSKVGAG 405 (481)
T ss_pred ------------CcEECCCCEECCCEEE-CCceecCCcccCceEEE-CCeEEcCCceEcCCEEEeCCCCccCCCCEECCC
Confidence 2456666666665554 22223334444433333 22445555555555544443222 346899999
Q ss_pred cEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhh
Q 040779 237 THTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRR 290 (300)
Q Consensus 237 ~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~ 290 (300)
+++|+++++.++++|+++++|+++++|++|+|++.++.+. ..++|++++++
T Consensus 406 ~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~v~~~~~~~~~---~~~~~~~~~~~ 456 (481)
T PRK14358 406 VFIGSNTTLIAPRVVGDAAFIAAGSAVHDDVPEGAMAVAR---GKQRNLEGWSR 456 (481)
T ss_pred eEEcCCCEEcCCcEECCCCEECCCCEEecccCCCCEEEec---ccceeccchhh
Confidence 9999999999999999999999999999999999998852 47888888876
No 27
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.91 E-value=5.9e-23 Score=183.24 Aligned_cols=186 Identities=25% Similarity=0.368 Sum_probs=147.1
Q ss_pred ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779 70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG 149 (300)
Q Consensus 70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig 149 (300)
..|+|.+.|++++.|++++.|+++++|++++.||++++|++++.|+++++||++|.|++++.|.. .++||++|.|+
T Consensus 92 ~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~~~I~~~~~I~~----~~~IG~~~~I~ 167 (324)
T TIGR01853 92 AGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDGSRIHPNVVIYE----RVQLGKNVIIH 167 (324)
T ss_pred CCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCCceECCCcEECC----CCEECCCCEEC
Confidence 45778888888888888888888888888888888999999999988999999999999999975 49999999999
Q ss_pred cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC----cCcEeCCccEEccCc
Q 040779 150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA----HDCKIGNYNIFANNT 225 (300)
Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~----~~v~Ig~~~~i~~~~ 225 (300)
++++|+.....+... ..++...+... ..+.||+++.|+.++++. +++.||+++.+...+
T Consensus 168 ~~~vIg~~gfg~~~~-------~~~~~~~i~~~----------G~vvIgd~v~IGa~~~I~r~~~~~t~Ig~~~~I~n~v 230 (324)
T TIGR01853 168 SGAVIGSDGFGYAHT-------ANGGHVKIPQI----------GRVIIEDDVEIGANTTIDRGAFDDTIIGEGTKIDNLV 230 (324)
T ss_pred CCcEECCCCccceec-------cCCcceecCcc----------ceEEECCCcEECCCCEEecCCcCcceecCCcEEccCc
Confidence 999997643222111 11223333321 233455555555555553 578899999999999
Q ss_pred eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeee
Q 040779 226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGE 276 (300)
Q Consensus 226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~ 276 (300)
.+.++++||+++.+++++.+.++++|++++++++++.|... +++++++++.
T Consensus 231 ~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~ 283 (324)
T TIGR01853 231 QIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAK 283 (324)
T ss_pred EECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccC
Confidence 99999999999999999999999999999999999999986 6999998875
No 28
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=6e-23 Score=193.00 Aligned_cols=170 Identities=16% Similarity=0.240 Sum_probs=97.4
Q ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCc
Q 040779 82 AIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDM 161 (300)
Q Consensus 82 ~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~ 161 (300)
+.|++++.|.+++.|.+++.||++|.|++++.|. +++||++|.|++++.+.. ++||+++.|++++.+..
T Consensus 270 ~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~-----~~ig~~~~Ig~~~~i~~----- 338 (456)
T PRK14356 270 ATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR-DAVVSSGATIHSFSHLEG-----AEVGDGCSVGPYARLRP----- 338 (456)
T ss_pred cEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-eeEECCCCEEeeeEEEcc-----cceecccEECCceEECC-----
Confidence 3333344444444444444445555555555554 455555555555555543 55555555555555521
Q ss_pred ccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-------cCceEEC
Q 040779 162 KYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-------AGHVVVE 234 (300)
Q Consensus 162 ~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-------~~~v~Ig 234 (300)
...+|+++.+++++.+. ++.|++++.+...+.++ ++.+|+++.|++++.. ..++.||
T Consensus 339 --------~~~ig~~~~ig~~~~i~-------~~~i~~~~~i~~~~~ig-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~ig 402 (456)
T PRK14356 339 --------GAVLEEGARVGNFVEMK-------KAVLGKGAKANHLTYLG-DAEIGAGANIGAGTITCNYDGVNKHRTVIG 402 (456)
T ss_pred --------CCEECCCCEecCCceee-------eeEecCCcEeccccccc-CeEECCCCEECCCceeeccccccCCCCEEC
Confidence 12344444444443331 12233333332222222 2333333333333221 3469999
Q ss_pred CCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeece
Q 040779 235 DYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERA 278 (300)
Q Consensus 235 ~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa 278 (300)
+++++|.++.+.++++|+++++++++++|.+|+|+++++.|...
T Consensus 403 d~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~~~~~~~~~~~~~ 446 (456)
T PRK14356 403 EGAFIGSNTALVAPVTIGDGALVGAGSVITKDVPDGSLAIARGR 446 (456)
T ss_pred CCcEEcCCCEEeCCcEECCCCEEcCCCEEeccCCCCcEEEEecc
Confidence 99999999999999999999999999999999999999998544
No 29
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.91 E-value=2e-22 Score=188.94 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=50.6
Q ss_pred cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779 228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR 281 (300)
Q Consensus 228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~ 281 (300)
..+++||+++++|+++++.++++|+++++|+++++|++|+|+++++.|.|.+..
T Consensus 378 ~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~v~~~~~~~g~~~~~~ 431 (446)
T PRK14353 378 KHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITEDVPDDALALGRARQET 431 (446)
T ss_pred CCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEECccCCCCCEEEecCceEe
Confidence 347999999999999999999999999999999999999999999999998753
No 30
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.89 E-value=2.5e-22 Score=159.42 Aligned_cols=143 Identities=23% Similarity=0.346 Sum_probs=104.4
Q ss_pred eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779 66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN 145 (300)
Q Consensus 66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~ 145 (300)
|++.++|+|+|.|-+++.||+++.|++++.|+++. +.+.||+++.|+++++|+.+..
T Consensus 14 i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~---------------~~I~IG~~tNIQDg~ViH~~~~-------- 70 (176)
T COG0663 14 IDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV---------------EPIRIGARTNIQDGVVIHADPG-------- 70 (176)
T ss_pred CCCceEECCCCEEEEeEEECCCCEECCceEEEccC---------------CceEECCCceecCCeEEecCCC--------
Confidence 45666777777766677777777777777776543 1567777777777777765210
Q ss_pred eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779 146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT 225 (300)
Q Consensus 146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~ 225 (300)
..+.||+++.|++++
T Consensus 71 -----------------------------------------------------------------~p~~IG~~vtIGH~a 85 (176)
T COG0663 71 -----------------------------------------------------------------YPVTIGDDVTIGHGA 85 (176)
T ss_pred -----------------------------------------------------------------CCeEECCCcEEcCcc
Confidence 223333333334444
Q ss_pred eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceE-EEecChhhhhhcCCCccc
Q 040779 226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAV-LRGLNLEGLRRRGFNVTE 297 (300)
Q Consensus 226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~-~~~~~~~~~~~~~~~~~~ 297 (300)
.+.+ |+||++|+||.+++|+.+++|+++|+|++||+|++ .+|+++++.|.||| +++++.++.+.-..+.+.
T Consensus 86 ivHG-c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~L~~G~Pak~~r~l~~~~~~~~~~~a~~ 159 (176)
T COG0663 86 VVHG-CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGSLVVGSPAKVVRPLDDEELAWLRENAEN 159 (176)
T ss_pred EEEE-eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCeEeecCcceeeecCChhHhhhhhHhHHH
Confidence 4444 99999999999999999999999999999999998 48999999999999 677888886665555544
No 31
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.88 E-value=2.7e-21 Score=180.50 Aligned_cols=200 Identities=16% Similarity=0.181 Sum_probs=127.3
Q ss_pred hhhhhhhccchhhHHHHHHHHHhhcccC-CcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCC
Q 040779 27 MSFLLLKVRRPCLSSLSTLFLRRLSTAL-PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDG 105 (300)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~ 105 (300)
..|+....|+.+.... .++.+.....+ .... .-......++.+++.|.+.+.|++++.|++++.|+ ++.|+++
T Consensus 215 ~~w~dI~t~~dl~~a~-~~l~~~~~~~~~~~g~----~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~ 288 (430)
T PRK14359 215 ENFMGVNSKFELAKAE-EIMQERIKKNAMKQGV----IMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAH 288 (430)
T ss_pred CEEeCCCCHHHHHHHH-HHHHHHHHHHHHHcCC----EEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCC
Confidence 3477777777766553 23322221111 0000 01123455667777777778888888888888887 7888888
Q ss_pred CEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEE
Q 040779 106 CLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSI 185 (300)
Q Consensus 106 ~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i 185 (300)
|.|++ +.+. +++||+++.|++++.|.+ +.||+++.+++.. + +++.++..
T Consensus 289 ~~I~~-~~i~-~~~ig~~~~i~~~~~i~~-----~~ig~~~~i~~~~-~--------------------~~~~i~~~--- 337 (430)
T PRK14359 289 SVIEE-SIIE-NSDVGPLAHIRPKSEIKN-----THIGNFVETKNAK-L--------------------NGVKAGHL--- 337 (430)
T ss_pred CEEec-cEEe-CCEECCCCEECCCcEEec-----cEEcCcEEEcccE-e--------------------cccccccc---
Confidence 88866 5554 777888888887777754 5666655555422 1 22222222
Q ss_pred ecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee-cCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC
Q 040779 186 HRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL-AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS 264 (300)
Q Consensus 186 ~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v-~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~ 264 (300)
++|++ +.|++++.||.++++..+... ..+++||+++++|.++.+.++++|+++++|+++++|.
T Consensus 338 ---------~~i~d-------~~Ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~ 401 (430)
T PRK14359 338 ---------SYLGD-------CEIDEGTNIGAGTITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVT 401 (430)
T ss_pred ---------ccccC-------CEECCCCEECCCceEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence 22221 233333333443333332222 2368999999999999999999999999999999999
Q ss_pred CCCCCCcEEee-eceE
Q 040779 265 QDVPKYSMVAG-ERAV 279 (300)
Q Consensus 265 ~~v~~~~~~~G-~Pa~ 279 (300)
+|+|+++++.| .|++
T Consensus 402 ~~v~~~~~~~~~~~~~ 417 (430)
T PRK14359 402 KDVPKGSLAISRAPQK 417 (430)
T ss_pred cccCCCcEEEeccCce
Confidence 99999999877 5553
No 32
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.88 E-value=7.7e-21 Score=159.98 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=86.4
Q ss_pred ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCc
Q 040779 139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNY 218 (300)
Q Consensus 139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~ 218 (300)
.+.|++++.+++++.+.... .....||+++.++.++.| .+++.+|++++++.++.+..++.||++
T Consensus 92 ~v~Ig~~~~Ig~~~~i~~~~---------~~~~~Ig~~~~i~~~v~I------~~~~~ig~~~~i~~~~~i~~~~~Ig~~ 156 (205)
T cd03352 92 GVIIGDDVEIGANTTIDRGA---------LGDTVIGDGTKIDNLVQI------AHNVRIGENCLIAAQVGIAGSTTIGDN 156 (205)
T ss_pred eEEECCCEEECCCCEEeccc---------cCCeEECCCCEECCceEE------eCCCEECCCCEECCCCEEccccEECCC
Confidence 47888888888888774211 223567777777777766 578899999999999999999999999
Q ss_pred cEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 219 NIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 219 ~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
++++.++.+..+++||+++++++++++.+ .++++.++.+.
T Consensus 157 ~~ig~~~~v~~~~~ig~~~~i~~~s~v~~--~~~~~~~~~G~ 196 (205)
T cd03352 157 VIIGGQVGIAGHLTIGDGVVIGAGSGVTS--IVPPGEYVSGT 196 (205)
T ss_pred eEEcCCCEEeCCcEECCCCEEcCCCEEee--ECCCCCEEEee
Confidence 99999999999999999999999999995 57888877654
No 33
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.86 E-value=2.2e-20 Score=147.33 Aligned_cols=137 Identities=21% Similarity=0.247 Sum_probs=98.0
Q ss_pred ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779 70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG 149 (300)
Q Consensus 70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig 149 (300)
.+|+|+++|++++.|++++.|.+.+++..++.||+++.|++++.|.++++||++|.|++++.+...
T Consensus 2 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~igg~-------------- 67 (139)
T cd03350 2 RRVPPGAIIRDGAFIGPGAVLMMPSYVNIGAYVDEGTMVDSWATVGSCAQIGKNVHLSAGAVIGGV-------------- 67 (139)
T ss_pred cccCCCcEECCCCEECCCCEECCCCEEccCCEECCCeEEcCCCEECCCCEECCCCEECCCCEECCc--------------
Confidence 356777777777777777777777777777777777777777777666677777766666665430
Q ss_pred cccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecC
Q 040779 150 HHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAG 229 (300)
Q Consensus 150 ~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~ 229 (300)
+. . ...+++.|++++++++++.+.+
T Consensus 68 ----~~--------------------------------------~-------------~~~~~v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 68 ----LE--------------------------------------P-------------LQATPVIIEDDVFIGANCEVVE 92 (139)
T ss_pred ----cc--------------------------------------c-------------cccCCeEECCCCEECCCCEECC
Confidence 00 0 0012344444444555555666
Q ss_pred ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCC-cEEeeece
Q 040779 230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY-SMVAGERA 278 (300)
Q Consensus 230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~-~~~~G~Pa 278 (300)
++.||++++|+++++|.++++|+++ +++++|.||+|++ ++++|+|+
T Consensus 93 gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~~~~~~~~~~g~~~ 139 (139)
T cd03350 93 GVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGRVPPGSVVVAGSLP 139 (139)
T ss_pred CCEECCCCEEcCCCEEcCCeEeccc---CcccEEecccCCCCEEecccCC
Confidence 7788888888888888888999998 9999999999999 99999985
No 34
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.85 E-value=3.2e-20 Score=157.86 Aligned_cols=61 Identities=26% Similarity=0.418 Sum_probs=54.6
Q ss_pred CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEecChhhhh
Q 040779 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGLNLEGLR 289 (300)
Q Consensus 229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~~~~~~~ 289 (300)
.+++||+++++|+++++.++++|+++++|+++++|.+|+|+++++.|+||| +++++++.+.
T Consensus 159 ~~v~IGd~v~IG~gsvI~~g~~Ig~~~~IgagsvV~~di~~~~vv~G~PA~~i~~~~~~~~~ 220 (231)
T TIGR03532 159 KPVVIEDNVLIGANAVILEGVRVGKGAVVAAGAIVTEDVPPNTVVAGVPAKVIKQVDEKTKD 220 (231)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccccCCCcEEEecCCEEeccCChhHhH
Confidence 468899999999999999999999999999999999999999999999999 5666665543
No 35
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.85 E-value=1.6e-19 Score=169.83 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=145.1
Q ss_pred CCcc-eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779 54 LPHV-YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV 132 (300)
Q Consensus 54 ~~~~-~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i 132 (300)
+++. ..|++.+.|++++.|++++.|.+++.||++|.|++++.|. ++.||+++.|++++.+. ++.|++++.|++++.+
T Consensus 258 i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~-~~~Ig~~~~I~~~~~i~-~~~i~~~~~ig~~~~i 335 (459)
T PRK14355 258 IDPETTYIDRGVVIGRDTTIYPGVCISGDTRIGEGCTIEQGVVIK-GCRIGDDVTVKAGSVLE-DSVVGDDVAIGPMAHL 335 (459)
T ss_pred ECCCceEECCCeEEcCCCEEeCCcEEeCCCEECCCCEECCCCEEe-CCEEcCCCEECCCeEEe-CCEECCCCEECCCCEE
Confidence 4454 4688899999999999999999999999999999999997 79999999999999997 8999999999999998
Q ss_pred ccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC--
Q 040779 133 GDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-- 210 (300)
Q Consensus 133 ~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-- 210 (300)
.. .+.|++++.++.++.++ .+.||+++.+...+.+ .++.||+++.|+.++.+.
T Consensus 336 ~~----~~~i~~~~~ig~~~~~~--------------~~~ig~~~~~~~~~~i-------g~~~ig~~~~ig~~~~~~~~ 390 (459)
T PRK14355 336 RP----GTELSAHVKIGNFVETK--------------KIVMGEGSKASHLTYL-------GDATIGRNVNIGCGTITCNY 390 (459)
T ss_pred CC----CCEeCCCCEECCCcccc--------------CCEECCCceeeeeccc-------cCCEECCCCEEccceeecCc
Confidence 76 37888888888877552 1345555555433333 246667777776666542
Q ss_pred -----cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 211 -----HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 211 -----~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
.++.||++++++.++.+..++.||++++|+++++|.+ .+++++++.++
T Consensus 391 ~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v~~--~v~~~~~~~~~ 443 (459)
T PRK14355 391 DGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTVTK--DVPPDSLAIAR 443 (459)
T ss_pred CCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEEcc--cCCCCcEEEec
Confidence 4688999999999999999999999999999999996 48888877653
No 36
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.84 E-value=9.2e-20 Score=172.01 Aligned_cols=191 Identities=17% Similarity=0.200 Sum_probs=153.5
Q ss_pred ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779 59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG 138 (300)
Q Consensus 59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~ 138 (300)
.+.+.+.||+++.|++++.|.+++.||+++.|+++|.|. +++|+++|.|++++.|. ++.||+++.|++++.+..
T Consensus 266 ~i~~~~~Ig~~~~I~~~~~I~~~v~Ig~~~~I~~~~~i~-~svI~~~~~I~~~~~i~-~~~ig~~~~ig~~~~i~~---- 339 (481)
T PRK14358 266 LIEDTVTLGRDVTIEPGVLLRGQTRVADGVTIGAYSVVT-DSVLHEGAVIKPHSVLE-GAEVGAGSDVGPFARLRP---- 339 (481)
T ss_pred eccCCcEECCCCEEeCCcEEeCCcEECCCCEECCCCEEe-eeEECCCCEEeecceec-CCeEeCceEECCccEEcC----
Confidence 357778899999999999999999999999999999996 79999999999999997 799999999999999975
Q ss_pred ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-------c
Q 040779 139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-------H 211 (300)
Q Consensus 139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-------~ 211 (300)
.+.||+++.+++++.+.. ..|++++.++..+.+ .+++||++|.|+.++.+. +
T Consensus 340 ~~~Ig~~~~Ig~~~~i~~--------------~~i~~~~~ig~~~~~-------~~~~ig~~~~ig~~~~i~~~~~~~~~ 398 (481)
T PRK14358 340 GTVLGEGVHIGNFVETKN--------------ARLDAGVKAGHLAYL-------GDVTIGAETNVGAGTIVANFDGVNKH 398 (481)
T ss_pred CcEECCCCEECCCEEECC--------------ceecCCcccCceEEE-------CCeEEcCCceEcCCEEEeCCCCccCC
Confidence 388999999999888731 345555555544444 345666666666665553 4
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcE-EeeeceE
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM-VAGERAV 279 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~-~~G~Pa~ 279 (300)
++.||++++++.++.+..+++||+++++++++++.++ +++++++... .+++++.++.. +.+.|.+
T Consensus 399 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v~~~--v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 464 (481)
T PRK14358 399 QSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAVHDD--VPEGAMAVAR-GKQRNLEGWSRRYWAGRHE 464 (481)
T ss_pred CCEECCCeEEcCCCEEcCCcEECCCCEECCCCEEecc--cCCCCEEEec-ccceeccchhhhhccCchH
Confidence 6899999999999999999999999999999999975 7788877764 37778877643 3333443
No 37
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.83 E-value=6e-20 Score=152.24 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=53.3
Q ss_pred CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC--CCCcEEeeeceE-EEecChhhhh
Q 040779 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV--PKYSMVAGERAV-LRGLNLEGLR 289 (300)
Q Consensus 229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v--~~~~~~~G~Pa~-~~~~~~~~~~ 289 (300)
++++||++++||.++++.++++|+++++|+++|+|++++ |++++++|+||| +++++.+..+
T Consensus 87 ~g~vIG~~v~IG~ga~V~~g~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~~~~~ 150 (196)
T PRK13627 87 HGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSDDELH 150 (196)
T ss_pred eeEEECCCCEECcCCccCCCcEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCHHHHH
Confidence 357899999999999999999999999999999999986 999999999999 5666665543
No 38
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.82 E-value=6.1e-19 Score=147.02 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=105.5
Q ss_pred CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
+++.+.|++.+.|+++++|+++++|.+. .|++++.|++++.+. ++.+++++.|++++.|..++.|++++.|+.++.+.
T Consensus 24 I~~~a~i~~~~~Ig~~~~I~~~~~I~~~-~Ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~ 101 (193)
T cd03353 24 IDPGVILEGKTVIGEDCVIGPNCVIKDS-TIGDGVVIKASSVIE-GAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIK 101 (193)
T ss_pred ECCCCEEeCcCEECCCCEECCCcEEeCC-EECCCCEEcCCeEEE-eeEECCCCEECCccEEcCccEECCCCEECCcEEEe
Confidence 3444444555555555555555555532 666666666666666 57778888888888887777888888888777776
Q ss_pred cCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEE-CcC
Q 040779 134 DDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-AHD 212 (300)
Q Consensus 134 ~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-~~~ 212 (300)
+ +.|++++.+++.+.++ ...||+++.+++++.+.. .... ...
T Consensus 102 ~-----s~ig~~~~i~~~~~i~--------------~~~Ig~~~~ig~~~~~~~------------------~~~~~~~~ 144 (193)
T cd03353 102 K-----STIGEGSKANHLSYLG--------------DAEIGEGVNIGAGTITCN------------------YDGVNKHR 144 (193)
T ss_pred c-----ceEcCCCEecccceec--------------ccEECCCCEEcCceEEec------------------cCCccccC
Confidence 5 6777777777666552 134444444444443321 1100 134
Q ss_pred cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
+.||++++++.++.+..+++||++++++++++|.+ .+++++++.+.
T Consensus 145 ~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V~~--~v~~~~~v~~~ 190 (193)
T cd03353 145 TVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTITK--DVPPGALAIAR 190 (193)
T ss_pred CEECCCeEEccCCEEeCCcEECCCcEECCCCEEcc--ccCCCCEEEec
Confidence 66666666677777777778888888888888886 47888777654
No 39
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.81 E-value=1.9e-18 Score=140.13 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=31.4
Q ss_pred ceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779 230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263 (300)
Q Consensus 230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv 263 (300)
+++|++++++|.++.+.+++.|+++++++++++|
T Consensus 129 ~~iIg~~~~ig~~~~i~~g~~ig~~~~i~agsvV 162 (163)
T cd05636 129 GAIIGDGVKTGINVSLNPGVKIGPGSWVYPGCVV 162 (163)
T ss_pred CcEEcCCeEECCCcEECCCcEECCCCEECCCcEe
Confidence 5899999999999999999999999999999987
No 40
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.81 E-value=7.1e-19 Score=165.07 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=133.9
Q ss_pred eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCC
Q 040779 58 YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLP 137 (300)
Q Consensus 58 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~ 137 (300)
..+++.++|++++.|+|+++|.+++.||+++.|++++.|. ++.|+++|.|.. +.+. ++.|++++.|++++.+..
T Consensus 250 ~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~s~Ig~~~~I~~-~~v~-~sii~~~~~ig~~~~i~~--- 323 (448)
T PRK14357 250 TYIHYDVEIGMDTIIYPMTFIEGKTRIGEDCEIGPMTRIV-DCEIGNNVKIIR-SECE-KSVIEDDVSVGPFSRLRE--- 323 (448)
T ss_pred EEEccceEECCCcEEcCCcEEEeeeEECCCcEECCCceec-ccEECCCCEEee-eEEE-EEEEeCCcEECCCcEECC---
Confidence 4677778888888888888888888888888888888887 588888888853 4555 788889999988888864
Q ss_pred CceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-------
Q 040779 138 GQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA------- 210 (300)
Q Consensus 138 ~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~------- 210 (300)
.+.|++++.|++++.+.. ..||+++.+...+.+. ++.||++++|+.++.+.
T Consensus 324 -~~~ig~~~~Ig~~~~i~~--------------~~ig~~~~~~~~~~~~-------~~~Ig~~~~ig~~~~~~~~~~~~~ 381 (448)
T PRK14357 324 -GTVLKKSVKIGNFVEIKK--------------STIGENTKAQHLTYLG-------DATVGKNVNIGAGTITCNYDGKKK 381 (448)
T ss_pred -cccccCCcEecCceeeec--------------cEEcCCcCcccccccc-------CcEECCCcEECCCccccccccccc
Confidence 378888888888877631 3455555554444442 45666666666665543
Q ss_pred cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
+.+.||+++++++++.+..+++||++++||++++|.++ +++++++.++
T Consensus 382 ~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v~~~--v~~~~~~~g~ 429 (448)
T PRK14357 382 NPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVITED--VPPYSLALGR 429 (448)
T ss_pred CCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEECCc--CCCCcEEEcc
Confidence 46899999999999999999999999999999999985 8888887764
No 41
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.80 E-value=3.6e-18 Score=161.55 Aligned_cols=165 Identities=17% Similarity=0.195 Sum_probs=92.4
Q ss_pred CcceecCccceeCCCceECCCcEEcCCCEECCCC-----EECCCCEEC----CCcEECCCCEECCCcEEeCCcEECCCcE
Q 040779 55 PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGV-----SVGPFCTIG----SAAKLGDGCLLYPSSHIFGNTELGDHCI 125 (300)
Q Consensus 55 ~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~-----~I~~~~~I~----~~~~Ig~~~~I~~~~~I~~~~~IG~~~~ 125 (300)
.+...|++.+.|++++.|.+++.|++++.|+.++ .|++++.|. .++.|++++.|++++.+..++.||+++.
T Consensus 269 ~~~v~ig~~~~I~~~~~i~~~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ 348 (482)
T PRK14352 269 DVDVTIGRDVVIHPGTQLLGRTTIGEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGK 348 (482)
T ss_pred eCCEEECCCcEEeCCcEEeecCEECCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCE
Confidence 4444444444444444444444444444444333 334444432 2455666666666666666666666666
Q ss_pred EccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEcc
Q 040779 126 LMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMG 205 (300)
Q Consensus 126 I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~ 205 (300)
++.++.+.. +.|++++.+++.+.++ ...||+++.|+.++.+.... +
T Consensus 349 ig~~~~~~~-----~~I~~~~~i~~~~~i~--------------~~~Ig~~~~IG~~~~i~~~~----------~----- 394 (482)
T PRK14352 349 LGAFVETKN-----ATIGRGTKVPHLTYVG--------------DADIGEHSNIGASSVFVNYD----------G----- 394 (482)
T ss_pred ECCcEEEcc-----cEECCCcEEccCceec--------------ccEECCCcEECCCcEEeccc----------c-----
Confidence 666665544 6667777776665552 13566666666555442210 0
Q ss_pred ccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE
Q 040779 206 SCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI 257 (300)
Q Consensus 206 ~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv 257 (300)
.-..++.||+++.++.++.+..+++||++++||++++|.++ +++++++
T Consensus 395 --~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v~~~--v~~~~~~ 442 (482)
T PRK14352 395 --VNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVIRED--VPPGALA 442 (482)
T ss_pred --ccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEEcCC--CCCCcEE
Confidence 00234566666666667777777888888888888888875 5666643
No 42
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.80 E-value=5.3e-18 Score=159.27 Aligned_cols=171 Identities=18% Similarity=0.279 Sum_probs=130.5
Q ss_pred ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779 59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG 138 (300)
Q Consensus 59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~ 138 (300)
.+++.+.+++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|+ .+.+. ++.||+++.|++++.|.+
T Consensus 258 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~I~-~~~I~~~~~I~-~~~i~-~~~ig~~~~I~~~~~I~~---- 330 (450)
T PRK14360 258 TISETVELGPDVIIEPQTHLRGNTVIGSGCRIGPGSLIE-NSQIGENVTVL-YSVVS-DSQIGDGVKIGPYAHLRP---- 330 (450)
T ss_pred EEeCCEEECCCCEECCCCEEeCCcEECCCCEECCCcEEE-EEEEcCCCEEe-eeEEe-eccccCCcEECCCCEECC----
Confidence 355666677777777777777777777777777777776 67778888884 45555 788999999999999975
Q ss_pred ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-------c
Q 040779 139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-------H 211 (300)
Q Consensus 139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-------~ 211 (300)
.+.|++++.|++++.+.. ..+++++.+..++.+ .++.||++|.|+.++.+. .
T Consensus 331 ~~~Ig~~~~Ig~~~~i~~--------------~~i~~~~~i~~~~~~-------~~~~i~~~~~iG~~~~~~~~~~~~~~ 389 (450)
T PRK14360 331 EAQIGSNCRIGNFVEIKK--------------SQLGEGSKVNHLSYI-------GDATLGEQVNIGAGTITANYDGVKKH 389 (450)
T ss_pred CCEEeCceEECCCEEEec--------------cccCCCcEeccceec-------CCceecCCcEECccceeccccccccC
Confidence 388999999999888832 456666666555444 245555555555555543 3
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~ 259 (300)
.+.||+++.++.++.+..+++||++++++++++|.+ .|++++++.+
T Consensus 390 ~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v~~--~~~~~~~~~g 435 (450)
T PRK14360 390 RTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTITK--DVPDNSLAIA 435 (450)
T ss_pred CcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEECc--cCCCCCEEEe
Confidence 789999999999999999999999999999999998 5888888766
No 43
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.80 E-value=1.6e-18 Score=144.09 Aligned_cols=58 Identities=29% Similarity=0.467 Sum_probs=53.3
Q ss_pred ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE-EecC
Q 040779 227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL-RGLN 284 (300)
Q Consensus 227 v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~-~~~~ 284 (300)
..++++||++||||.+++|.++++|+++++|+++|+|.+|+|++++++|+|||+ +++.
T Consensus 128 ~~~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kdvp~~~v~~G~PAk~i~~~~ 186 (203)
T PRK09527 128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKDIPPNVVAAGVPCRVIREIN 186 (203)
T ss_pred ccCCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcccCCCCcEEEeeCCEEeccCC
Confidence 446899999999999999999999999999999999999999999999999994 5443
No 44
>PLN02296 carbonate dehydratase
Probab=99.79 E-value=7.1e-19 Score=152.20 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=53.9
Q ss_pred CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceE-EEecChhhhh
Q 040779 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAV-LRGLNLEGLR 289 (300)
Q Consensus 229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~-~~~~~~~~~~ 289 (300)
++++||++|+||.+++|.++++|+++++|+++|+|.++ +|++++++|+||| ++++..+...
T Consensus 135 ~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~~~~ 198 (269)
T PLN02296 135 HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEEEIA 198 (269)
T ss_pred cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHHHHH
Confidence 34789999999999999999999999999999999998 8999999999999 5666665543
No 45
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.79 E-value=7.6e-18 Score=158.53 Aligned_cols=173 Identities=20% Similarity=0.251 Sum_probs=141.0
Q ss_pred ceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCC
Q 040779 57 VYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDL 136 (300)
Q Consensus 57 ~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~ 136 (300)
...|++.+.|++++.|++++.|.+++.||+++.|++++.|. ++.|+++|.|++ +.+. ++.||++|.|++++.|..
T Consensus 259 ~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~-~~~ig~~~~I~~-~~i~-~~~ig~~~~Ig~~~~i~~-- 333 (458)
T PRK14354 259 STYIDADVEIGSDTVIEPGVVIKGNTVIGEDCVIGPGSRIV-DSTIGDGVTITN-SVIE-ESKVGDNVTVGPFAHLRP-- 333 (458)
T ss_pred eEEECCCcEECCCCEEeCCeEEecceEECCCCEECCCcEEe-ccEECCCCEEEE-EEEe-CCEECCCcEECCceEecC--
Confidence 35678888888999999999998889999999999999997 689999999985 5555 899999999999999975
Q ss_pred CCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC------
Q 040779 137 PGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA------ 210 (300)
Q Consensus 137 ~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~------ 210 (300)
.+.||+++.+++++.+.. ..|++++.+...+.+ ..+.||+++.++.++.+.
T Consensus 334 --~~~Ig~~~~i~~~~~i~~--------------~~i~~~~~i~~~~~~-------~~~~ig~~~~ig~~~~~~~~~~~~ 390 (458)
T PRK14354 334 --GSVIGEEVKIGNFVEIKK--------------STIGEGTKVSHLTYI-------GDAEVGENVNIGCGTITVNYDGKN 390 (458)
T ss_pred --CCEEeCCcEECCceEEee--------------eEECCCCEecceeee-------cCcccCCceEEcCceeeccccccc
Confidence 388999999999998842 567777777766665 235566666666555553
Q ss_pred -cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779 211 -HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259 (300)
Q Consensus 211 -~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~ 259 (300)
..+.|+++++++.++.+..++.||+++++|+++.|.++ |++++++.+
T Consensus 391 ~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v~~~--~~~~~~~~~ 438 (458)
T PRK14354 391 KFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTITKD--VPEDALAIA 438 (458)
T ss_pred ccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEECCC--CCCCCEEEe
Confidence 26889999999999999999999999999999999975 777777664
No 46
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.79 E-value=2.7e-18 Score=161.31 Aligned_cols=72 Identities=21% Similarity=0.357 Sum_probs=39.0
Q ss_pred EEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 77 IVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 77 ~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
++.+.+.||+++.|++++.|++++.||+++.|++++.|. ++.||++|.|++++.+.. +.|++++.|++++.+
T Consensus 257 ~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~~~~i~~-----~~ig~~~~Ig~~~~i 328 (451)
T TIGR01173 257 DIRGTVEIGRDVEIDPNVILEGKVKIGDDVVIGPGCVIK-NSVIGSNVVIKAYSVLEG-----SEIGEGCDVGPFARL 328 (451)
T ss_pred EECCccEECCCCEEcCCeEEeCceEECCCCEECCCcEEe-eeEecCCCEEeeecEEec-----ccccCCcEECCeeEE
Confidence 344445555555555555555555555555555555554 455555555555555554 555555555555554
No 47
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.79 E-value=2.7e-18 Score=143.55 Aligned_cols=154 Identities=21% Similarity=0.267 Sum_probs=97.3
Q ss_pred eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779 66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN 145 (300)
Q Consensus 66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~ 145 (300)
+++++.|++++.|. ++.||+++.|++++.|. +++||++++|++++.+. ++.||++|.|++++.+... ....+
T Consensus 5 ~~~~~~I~~~a~i~-~~~IG~~~~Ig~~a~I~-~s~IG~~s~I~~~~~i~-~~~IG~~~~I~~~v~I~~~----~h~~~- 76 (204)
T TIGR03308 5 LSPEPTLHPTAELT-ESKLGRYTEIGERTRLR-EVALGDYSYVMRDCDII-YTTIGKFCSIAAMVRINAT----NHPME- 76 (204)
T ss_pred cCCCCeECCCcEEe-ccEeCCCcEECCCcEEe-CCEECCCCEECCCcEEe-eeEECCCCEECCCCEECCC----CCCCC-
Confidence 56677777777775 46777777777777776 56666666666666665 4566666666666555431 00000
Q ss_pred eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779 146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT 225 (300)
Q Consensus 146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~ 225 (300)
+ ......+.. ........ ..+... ...
T Consensus 77 -----~-------------------------~s~~~~~~~--~~~~~~~~--------------~~~~~~-------~~~ 103 (204)
T TIGR03308 77 -----R-------------------------PTLHHFTYR--AAMYFDDA--------------SDDADF-------FAW 103 (204)
T ss_pred -----c-------------------------ccccccccc--cccccccc--------------cccccc-------ccc
Confidence 0 000000000 00000000 000000 011
Q ss_pred eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779 226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~ 280 (300)
....+++||++++||.+++|.++++|+++++|+++++|.+|+|++++++|+||++
T Consensus 104 ~~~~~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~i~~~~~~~G~Pa~~ 158 (204)
T TIGR03308 104 RRAKRVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKDVAPYTIVAGVPAKL 158 (204)
T ss_pred ccCCCeEECCCCEECCCCEECCCCEECCCCEECCCCEECCCCCCCcEEEecCchH
Confidence 2456899999999999999999999999999999999999999999999999985
No 48
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.79 E-value=1e-18 Score=144.40 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=50.0
Q ss_pred ceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceEE-EecChhhhh
Q 040779 230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAVL-RGLNLEGLR 289 (300)
Q Consensus 230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~~-~~~~~~~~~ 289 (300)
+++|+++++||.++.+.+++.|+++++|+++++|.+ ++|++++++|+|||+ +.+..+.+.
T Consensus 86 ~siIg~~~~IG~ga~I~~g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~~~~~ 148 (192)
T TIGR02287 86 GCIVGRNALVGMNAVVMDGAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSEQELA 148 (192)
T ss_pred CCEECCCCEECCCcccCCCeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCHHHHH
Confidence 477888888888888888899999999999999998 579999999999995 556665544
No 49
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.79 E-value=5.4e-18 Score=136.23 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=49.6
Q ss_pred ceEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceEE-EecChh
Q 040779 230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAVL-RGLNLE 286 (300)
Q Consensus 230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~~-~~~~~~ 286 (300)
+++||++++|+.++++.++++|+++++|+++++|.+ ++|+++++.|+|||. ++++.+
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~ 137 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDE 137 (155)
T ss_pred CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHH
Confidence 378888999999999999999999999999999998 689999999999994 555543
No 50
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.78 E-value=6.5e-18 Score=136.77 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=51.1
Q ss_pred CCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEec
Q 040779 216 GNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGL 283 (300)
Q Consensus 216 g~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~ 283 (300)
|+++.+..++.+.+ ++||++||||.++.|.+++.|+++++|+++++|.++ +|+++++.|+|+..+-.
T Consensus 70 G~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~ 138 (164)
T cd04646 70 GSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ 138 (164)
T ss_pred CCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEec
Confidence 33333333444433 888888899999999889999999999999999988 89999999998875433
No 51
>PLN02472 uncharacterized protein
Probab=99.77 E-value=3.7e-18 Score=145.83 Aligned_cols=75 Identities=23% Similarity=0.304 Sum_probs=58.6
Q ss_pred eCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEEC--CCCCCCcEEeeeceE-EEecChhhhhh
Q 040779 215 IGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS--QDVPKYSMVAGERAV-LRGLNLEGLRR 290 (300)
Q Consensus 215 Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~--~~v~~~~~~~G~Pa~-~~~~~~~~~~~ 290 (300)
||+++.|++++.+ .+++|+++++||.+++|.+++.|+++++|+++++|+ .++|++.++.|+||| ++.++.+..+.
T Consensus 129 IG~~v~IG~~s~L-~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~~~~~~ 206 (246)
T PLN02472 129 IDRYVTIGAYSLL-RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTNEETLE 206 (246)
T ss_pred ECCCCEECCCcEE-CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCHHHHHH
Confidence 3333333344444 357889999999999999999999999999999999 468999999999999 57777655544
No 52
>PRK10502 putative acyl transferase; Provisional
Probab=99.77 E-value=5.8e-18 Score=139.42 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=51.3
Q ss_pred ecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779 227 LAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 227 v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~ 280 (300)
+.++++|||++|||.++.|.++++|+++++|+++++|++|+|++++++|+|||.
T Consensus 121 ~~~~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~~v~~~~v~~G~Pa~~ 174 (182)
T PRK10502 121 NTAPIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFKSLPANTICRGNPAVP 174 (182)
T ss_pred ccCCEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEecccCCCcEEECCcceE
Confidence 457899999999999999999999999999999999999999999999999994
No 53
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.77 E-value=1.2e-17 Score=157.12 Aligned_cols=156 Identities=15% Similarity=0.248 Sum_probs=90.6
Q ss_pred ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779 64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG 143 (300)
Q Consensus 64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig 143 (300)
+.|++++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.|..++.+++++.|++++.+.. +.|+
T Consensus 284 v~ig~~~~I~~~~~i~-~~~ig~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~-----~~i~ 356 (456)
T PRK09451 284 VTLGNRVKIGAGCVLK-NCVIGDDCEISPYSVVE-DANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKK-----ARLG 356 (456)
T ss_pred cEECCCCEECCCceEe-cCEEcCCCEEcCCEEEe-CCccCCCcEecCceEEeCCCEECCCceeccceeeec-----eeeC
Confidence 3444444444444443 45555555555555555 466667777777777766777777777777766654 6666
Q ss_pred cceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEEC-cCcEeCCccEEc
Q 040779 144 CNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIA-HDCKIGNYNIFA 222 (300)
Q Consensus 144 ~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~-~~v~Ig~~~~i~ 222 (300)
+++.+++.+.++ ...||+++.|++++.+ ..+.... ..+.||++++++
T Consensus 357 ~~~~~~~~~~~g--------------~~~ig~~~~ig~~~~~------------------~~~~~~~~~~~~Igd~~~ig 404 (456)
T PRK09451 357 KGSKAGHLTYLG--------------DAEIGDNVNIGAGTIT------------------CNYDGANKFKTIIGDDVFVG 404 (456)
T ss_pred CCCccCcccccc--------------ccEECCCCEEcCCeEE------------------ecccCcccCCCEECCCcEEC
Confidence 666666555442 1233333333333322 1111111 136666677777
Q ss_pred cCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 223 NNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 223 ~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
.++.+..++.||++++++++++|.++ +++++++-++
T Consensus 405 ~~~~i~~~~~ig~~~~i~~gs~v~~~--v~~~~~~~~~ 440 (456)
T PRK09451 405 SDTQLVAPVTVGKGATIGAGTTVTRD--VAENELVISR 440 (456)
T ss_pred CCCEEeCCcEECCCCEECCCCEEccc--cCCCCEEEec
Confidence 77777777777888888888887765 6777666444
No 54
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.76 E-value=6.3e-18 Score=135.48 Aligned_cols=68 Identities=31% Similarity=0.456 Sum_probs=53.3
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEccCCEECC--CCCCCcEEeeeceE-EEecChhhhhhcCCCcccc
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ--DVPKYSMVAGERAV-LRGLNLEGLRRRGFNVTED 298 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~--~v~~~~~~~G~Pa~-~~~~~~~~~~~~~~~~~~~ 298 (300)
+.||++++++.++.+.+++.|++++++++++.+.+ ++|++++++|+||+ ++.+..+.++...+++|.+
T Consensus 79 ~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~~~~~~~~~~~~~ 149 (154)
T cd04650 79 AKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEEEIEWIKKNAEEY 149 (154)
T ss_pred cEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHHHHHHHHHHHHHH
Confidence 56777777777777777888889999999988885 68999999999999 5666666666566655544
No 55
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.76 E-value=5.8e-17 Score=131.39 Aligned_cols=95 Identities=24% Similarity=0.330 Sum_probs=75.6
Q ss_pred CCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
+.+.+.+.+.+.+++++.|+++++|.+++.|++++.|++++.|.+++.|++++.|++++.|. ++.|++++.|++++.+.
T Consensus 8 ~~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~-~siig~~~~I~~~~~i~ 86 (163)
T cd05636 8 VEEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVK-NSIIMDGTKVPHLNYVG 86 (163)
T ss_pred cCCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEe-eeEecCCCEeccCCEEe
Confidence 34455666677788888888888888888888888888888888778888888888888886 68888888888888876
Q ss_pred cCCCCceeeccceEEccccEE
Q 040779 134 DDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 134 ~~~~~~~~Ig~~~~ig~~~~i 154 (300)
+ ++|++++.+++++.+
T Consensus 87 ~-----siIg~~~~I~~~~~i 102 (163)
T cd05636 87 D-----SVLGENVNLGAGTIT 102 (163)
T ss_pred c-----CEECCCCEECCCcEE
Confidence 5 778888888887776
No 56
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=9e-18 Score=149.10 Aligned_cols=154 Identities=17% Similarity=0.251 Sum_probs=89.3
Q ss_pred eeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeecc
Q 040779 65 SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGC 144 (300)
Q Consensus 65 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~ 144 (300)
+||+++.|+|++.|. ++.|++|+.|.++++|. ++++++++.|||.++|++++.++++++||..+.+.. +.||+
T Consensus 288 ~ig~~v~iGpg~~i~-ds~I~~~a~I~~~S~ie-~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEvK~-----a~ig~ 360 (460)
T COG1207 288 VIGDNVVIGPGSVIK-DSVIGDNAVIKAYSVIE-GSTVGEGATVGPFARLRPGAVLGADVHIGNFVEVKK-----ATIGK 360 (460)
T ss_pred EECCceEECCCcEEE-eeEEcCCCEEEecceee-ccEecCCcccCCccccCCcCcccCCCeEeeeEEEec-----ccccC
Confidence 444445555555544 46666666666666666 577777777777777777777777777777777766 67777
Q ss_pred ceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEE-CcCcEeCCccEEcc
Q 040779 145 NNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-AHDCKIGNYNIFAN 223 (300)
Q Consensus 145 ~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-~~~v~Ig~~~~i~~ 223 (300)
++..++-++||. ..||+++.||.+++ .+.+--. .+.+.||++++|+.
T Consensus 361 gsKa~HLtYlGD--------------A~iG~~~NiGAGtI------------------tcNYDG~nK~~T~IGd~vFiGS 408 (460)
T COG1207 361 GSKAGHLTYLGD--------------AEIGENVNIGAGTI------------------TCNYDGKNKFKTIIGDNVFIGS 408 (460)
T ss_pred Cccccceeeecc--------------ceecCCceeccceE------------------EEcCCCcccceeeecCCcEEcc
Confidence 777777666642 23333333332222 1111111 13455555666666
Q ss_pred CceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779 224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259 (300)
Q Consensus 224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~ 259 (300)
++.+-.|+.||++++|+++++|.++ +|+++..-+
T Consensus 409 ns~LVAPV~IGd~a~iaAGStIT~D--Vp~~aLai~ 442 (460)
T COG1207 409 NSQLVAPVTIGDGATIAAGSTITKD--VPEGALAIS 442 (460)
T ss_pred CCcEEeeEEecCCcEEcccceEccc--CCCCceeEe
Confidence 6666666666666777777666654 555555433
No 57
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.75 E-value=5.2e-17 Score=132.08 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=63.4
Q ss_pred CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcE
Q 040779 193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM 272 (300)
Q Consensus 193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~ 272 (300)
+.+.||++++++.++.+..++.||+++.++.++.+. +++||+++++|.++.+. ++.|++++++++++++.++.|.+.+
T Consensus 63 ~~v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~~~~~~~~~ 140 (167)
T cd00710 63 YSVWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVITSQTQADAL 140 (167)
T ss_pred CCEEECCCceECCCCEEeCCEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEcCCCccccc
Confidence 345666666666666666677777777777777775 58999999999999885 6899999999999999998887765
Q ss_pred Eee
Q 040779 273 VAG 275 (300)
Q Consensus 273 ~~G 275 (300)
-..
T Consensus 141 ~~~ 143 (167)
T cd00710 141 PDV 143 (167)
T ss_pred ccC
Confidence 443
No 58
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.75 E-value=3.8e-17 Score=135.74 Aligned_cols=59 Identities=25% Similarity=0.437 Sum_probs=54.4
Q ss_pred cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceE-EEecChh
Q 040779 228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAV-LRGLNLE 286 (300)
Q Consensus 228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~-~~~~~~~ 286 (300)
.++++||+++++|.++.+.++++|+++++|+++|+|++++|++++++|.||| +++++.+
T Consensus 128 ~~~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~i~~~~~~~G~Pa~~ik~~~~~ 187 (192)
T PRK09677 128 SSAVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKSIPENTVIAGNPAKIIKKYNHE 187 (192)
T ss_pred cCCeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcccCCCcEEEecCCEEEeccCcc
Confidence 4689999999999999999999999999999999999999999999999999 5666554
No 59
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.74 E-value=1.3e-16 Score=148.94 Aligned_cols=195 Identities=12% Similarity=0.095 Sum_probs=116.1
Q ss_pred ccccchhhhhhhccchhhHHHHHHHHHh-hcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCc
Q 040779 22 TAESGMSFLLLKVRRPCLSSLSTLFLRR-LSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAA 100 (300)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~ 100 (300)
+..-+-+|-+......+.......++.. ......+...+.+++.|.+.+.|++++.|++++.|+ ++.|+++|.|++ +
T Consensus 217 w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~-~~~i~~~~~I~~-~ 294 (430)
T PRK14359 217 FMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIE-NSHIKAHSVIEE-S 294 (430)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEE-eeEECCCCEEec-c
Confidence 3334445555444444444433322211 111234455566666677777777777777777666 667777776654 4
Q ss_pred EECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEEC
Q 040779 101 KLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFR 180 (300)
Q Consensus 101 ~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~ 180 (300)
.+ .++.|++++.|++++.| ++++|++++.+.+ ..+ +++.+++.+.++. ..||+++.++
T Consensus 295 ~i-~~~~ig~~~~i~~~~~i-~~~~ig~~~~i~~-----~~~-~~~~i~~~~~i~d--------------~~Ig~~~~ig 352 (430)
T PRK14359 295 II-ENSDVGPLAHIRPKSEI-KNTHIGNFVETKN-----AKL-NGVKAGHLSYLGD--------------CEIDEGTNIG 352 (430)
T ss_pred EE-eCCEECCCCEECCCcEE-eccEEcCcEEEcc-----cEe-ccccccccccccC--------------CEECCCCEEC
Confidence 44 35555555555555555 3566666666655 555 6777777777731 2344444444
Q ss_pred CCeEEecCCccCCceEECCCCEEccccEE-CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779 181 EHVSIHRSSKSGDRTVIGDNNLIMGSCHI-AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259 (300)
Q Consensus 181 ~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~ 259 (300)
.++.+ +.+... ...+.||++++++.++.+..+++||++++||++++|.++ +++++++.+
T Consensus 353 ~~~~~------------------~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v~~~--v~~~~~~~~ 412 (430)
T PRK14359 353 AGTIT------------------CNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTVTKD--VPKGSLAIS 412 (430)
T ss_pred CCceE------------------ccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEEccc--cCCCcEEEe
Confidence 33333 111111 124778888888888888889999999999999999976 677777755
Q ss_pred C
Q 040779 260 G 260 (300)
Q Consensus 260 ~ 260 (300)
+
T Consensus 413 ~ 413 (430)
T PRK14359 413 R 413 (430)
T ss_pred c
Confidence 4
No 60
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.74 E-value=3.5e-17 Score=133.32 Aligned_cols=55 Identities=33% Similarity=0.514 Sum_probs=51.9
Q ss_pred eecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779 226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~ 280 (300)
...++++||++||||.+++|.++++|+++++|+++|+|++|+|++++++|+|||+
T Consensus 114 ~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~vp~~~vv~G~PAkv 168 (169)
T cd03357 114 EYAKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKDIPANVVAAGNPARV 168 (169)
T ss_pred eecCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccccCCCcEEEccccEE
Confidence 4557899999999999999999999999999999999999999999999999985
No 61
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.73 E-value=9.7e-17 Score=136.98 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=35.8
Q ss_pred cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEe--eec
Q 040779 213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVA--GER 277 (300)
Q Consensus 213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~--G~P 277 (300)
+.|++++.|++++.+.++++||++++||++++|.++++|.|.. +++++.+++|+++++. +.|
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~~~I~~~~---~g~v~~~~vp~~svv~~g~~p 237 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQSTKIYDRE---TGEIHYGRVPAGSVVVSGNLP 237 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCCCEEeccc---CCceeeeecCCCcEEecCCee
Confidence 3444444444444445555566666666666666666666655 5666666777776665 355
No 62
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.73 E-value=1.1e-16 Score=129.63 Aligned_cols=74 Identities=20% Similarity=0.353 Sum_probs=58.2
Q ss_pred CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCC
Q 040779 193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDV 267 (300)
Q Consensus 193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v 267 (300)
..+.||+++.+..++.+.+ +.||++++++.++.+.++++||+++++|++++|.+++.++++++++++..+.++.
T Consensus 65 ~~v~IG~~~~i~~~~~i~~-~~IGd~~~Ig~~a~I~~gv~Ig~~~~IgagsvV~~~~~i~~~~vi~g~~~~~~~~ 138 (164)
T cd04646 65 KPMIIGSNNVFEVGCKCEA-LKIGNNNVFESKSFVGKNVIITDGCIIGAGCKLPSSEILPENTVIYGADCLRRTQ 138 (164)
T ss_pred CCeEECCCCEECCCcEEEe-eEECCCCEEeCCCEECCCCEECCCCEEeCCeEECCCcEECCCeEEeCCceEEEec
Confidence 3444555555555555544 7777788888888888899999999999999999999999999999998887754
No 63
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.73 E-value=4.5e-17 Score=133.68 Aligned_cols=88 Identities=25% Similarity=0.324 Sum_probs=72.1
Q ss_pred ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE
Q 040779 194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV 273 (300)
Q Consensus 194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~ 273 (300)
.++||+++.|++++.+....+..+......+..+.+++.||++||||++++|.++++|+++++|+++++|++|+|+++++
T Consensus 93 ~I~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~di~~~~i~ 172 (183)
T PRK10092 93 PIRIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVV 172 (183)
T ss_pred eEEECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccccCCCcEE
Confidence 34777777777777776444433333334455677899999999999999999999999999999999999999999999
Q ss_pred eeeceEEE
Q 040779 274 AGERAVLR 281 (300)
Q Consensus 274 ~G~Pa~~~ 281 (300)
+|+|||+.
T Consensus 173 ~G~PAr~i 180 (183)
T PRK10092 173 GGNPARII 180 (183)
T ss_pred EecCcEEe
Confidence 99999964
No 64
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.73 E-value=1.2e-16 Score=137.59 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=36.5
Q ss_pred ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEe-e-----------eceE-EEecChhhhhhc
Q 040779 225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVA-G-----------ERAV-LRGLNLEGLRRR 291 (300)
Q Consensus 225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~-G-----------~Pa~-~~~~~~~~~~~~ 291 (300)
+.+..+++||++++|+++++|.+++.|.+. .+++++.+++|+++++. | .||+ +++++.+...+.
T Consensus 189 s~I~~Gv~IGdgavIgag~vV~~gt~I~~~---~~g~v~~g~vp~~svvv~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 265 (272)
T PRK11830 189 SEVVEGVIVEEGSVLGMGVFLGQSTKIYDR---ETGEVHYGRVPAGSVVVPGSLPSKDGGYSLYCAVIVKKVDAKTRSKT 265 (272)
T ss_pred CEEcCCCEECCCCEEcCCCEEcCCeEECcC---CCCcEEeeecCCCcEEecCcccccCCCcCCcCcEEEEEccccchhhh
Confidence 333444455555555555555555555554 25566666666666654 5 3888 566666555444
Q ss_pred CC
Q 040779 292 GF 293 (300)
Q Consensus 292 ~~ 293 (300)
..
T Consensus 266 ~~ 267 (272)
T PRK11830 266 SI 267 (272)
T ss_pred hh
Confidence 43
No 65
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.72 E-value=6.9e-17 Score=123.94 Aligned_cols=54 Identities=28% Similarity=0.432 Sum_probs=51.0
Q ss_pred cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779 228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLR 281 (300)
Q Consensus 228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~ 281 (300)
..+++|+++++|+.++++.+++.|++++.|++++++++++|+++++.|+|||..
T Consensus 65 ~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~~~v~~~i~~~~~~~G~pa~~~ 118 (119)
T cd03358 65 LKGTTVKRGASIGANATILPGVTIGEYALVGAGAVVTKDVPPYALVVGNPARII 118 (119)
T ss_pred cCCcEECCCcEECcCCEEeCCcEECCCCEEccCCEEeCcCCCCeEEecCcceec
Confidence 456999999999999999999999999999999999999999999999999853
No 66
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.71 E-value=2.8e-16 Score=147.88 Aligned_cols=204 Identities=18% Similarity=0.195 Sum_probs=150.3
Q ss_pred hhhhhhccchhhHHHHHHHHHhhcc-cC--------CcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECC
Q 040779 28 SFLLLKVRRPCLSSLSTLFLRRLST-AL--------PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGS 98 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~ 98 (300)
.|+.+..|..+.... .++...... .+ .....+++.+.+++++.|.+++.|.+++.||+++.|++++.|.
T Consensus 226 ~~~~I~tp~dl~~a~-~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~- 303 (456)
T PRK14356 226 NLLGVNTPAELVRSE-ELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLR- 303 (456)
T ss_pred eEecCcCHHHHHHHH-HHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEE-
Confidence 466677777665432 333222111 11 2345566667777777777777777788899999999999997
Q ss_pred CcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccCCcceeeeCcccE
Q 040779 99 AAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNE 178 (300)
Q Consensus 99 ~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~ 178 (300)
++.|++++.|++++.|. +++||++|.|++++.|.. .+.+++++.+++++.+.. .++++++.
T Consensus 304 ~~~i~~~~~I~~~~~i~-~~~ig~~~~Ig~~~~i~~----~~~ig~~~~ig~~~~i~~--------------~~i~~~~~ 364 (456)
T PRK14356 304 DAVVSSGATIHSFSHLE-GAEVGDGCSVGPYARLRP----GAVLEEGARVGNFVEMKK--------------AVLGKGAK 364 (456)
T ss_pred eeEECCCCEEeeeEEEc-ccceecccEECCceEECC----CCEECCCCEecCCceeee--------------eEecCCcE
Confidence 69999999999999996 999999999999999975 388999999999887732 34555555
Q ss_pred ECCCeEEecCCccCCceEECCCCEEccccEE-------CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEE
Q 040779 179 FREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-------AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI 251 (300)
Q Consensus 179 i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-------~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I 251 (300)
+...+++ + ++.||+++.|+.++.+ ..++.||++++++.++.+..++.||++++++++++|.++ +
T Consensus 365 i~~~~~i------g-~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v~~~--~ 435 (456)
T PRK14356 365 ANHLTYL------G-DAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVITKD--V 435 (456)
T ss_pred ecccccc------c-CeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEEecc--C
Confidence 5544443 2 4666666666666543 246899999999999999999999999999999999974 7
Q ss_pred CCCcEEccCC
Q 040779 252 GSHSFIGGGS 261 (300)
Q Consensus 252 ~~~~vv~~~s 261 (300)
++++++-+.+
T Consensus 436 ~~~~~~~~~~ 445 (456)
T PRK14356 436 PDGSLAIARG 445 (456)
T ss_pred CCCcEEEEec
Confidence 7777765543
No 67
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.71 E-value=1.7e-16 Score=132.79 Aligned_cols=103 Identities=30% Similarity=0.457 Sum_probs=90.2
Q ss_pred ccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCc
Q 040779 176 NNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHS 255 (300)
Q Consensus 176 ~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~ 255 (300)
++.+++++.|.+++.+..++.||+++.|..++.+.+++.|++++.++.++.+.++++|+++++++.++.+.+++.|++++
T Consensus 99 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~i~~~~ 178 (201)
T TIGR03570 99 SASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTLSGGVVIGEGVFIGAGATIIQGVTIGAGA 178 (201)
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEEeCCcEECCCCEECCCCEEeCCCEECCCC
Confidence 33344444444444446788889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCEECCCCCCCcEEeeece
Q 040779 256 FIGGGSVVSQDVPKYSMVAGERA 278 (300)
Q Consensus 256 vv~~~svv~~~v~~~~~~~G~Pa 278 (300)
++++++++.+++|++++|.|+||
T Consensus 179 ~i~~~~~v~~~~~~~~~~~g~pa 201 (201)
T TIGR03570 179 IVGAGAVVTKDIPDGGVVVGVPA 201 (201)
T ss_pred EECCCCEECCcCCCCCEEEeccC
Confidence 99999999999999999999997
No 68
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.70 E-value=3.1e-16 Score=118.02 Aligned_cols=103 Identities=23% Similarity=0.296 Sum_probs=76.3
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.||+++.+++++.|.. ...++||+++.|+.++.+.....- ..........+++.||++||++.++.+.++++
T Consensus 4 i~iG~~~~I~~~~~i~~----~~~i~IG~~~~I~~~~~I~~~~h~---~~~~~~~~~~~~v~Ig~~~~ig~~~~i~~g~~ 76 (107)
T cd05825 4 LTIGDNSWIGEGVWIYN----LAPVTIGSDACISQGAYLCTGSHD---YRSPAFPLITAPIVIGDGAWVAAEAFVGPGVT 76 (107)
T ss_pred EEECCCCEECCCCEEee----CCceEECCCCEECCCeEeecCCCC---CCcCccceecCCEEECCCCEECCCCEECCCCE
Confidence 45566666666666543 235666666666666666432110 00112345668899999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~ 280 (300)
|+++++|+++++|++|+|++++++|+|||.
T Consensus 77 Ig~~~~i~~gs~v~~~~~~~~~~~G~Pa~~ 106 (107)
T cd05825 77 IGEGAVVGARSVVVRDLPAWTVYAGNPAVP 106 (107)
T ss_pred ECCCCEECCCCEEeCcCCCCCEEECCccEe
Confidence 999999999999999999999999999985
No 69
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=99.69 E-value=2.1e-16 Score=131.33 Aligned_cols=96 Identities=30% Similarity=0.440 Sum_probs=75.8
Q ss_pred CCceEECCCCEEccccEECcCcEeCCccEEccC-ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCC
Q 040779 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANN-TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKY 270 (300)
Q Consensus 192 ~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~-~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~ 270 (300)
..+.+||+++++..++.+.......+...-... ....++++||+++|||.+++|++|++||++++|+++|+|++|+|++
T Consensus 85 ~~~i~ig~~~~i~~~v~i~~~~h~~~~~~~~~~~~~~~~~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtkdvp~~ 164 (190)
T COG0110 85 GEGITIGDNVVVGPNVTIYTNSHPGDFVTANIGALVGAGPVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTKDVPPY 164 (190)
T ss_pred cCCeEECCCceECCCcEEecCCCCCChhhcccCCceecCCeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeCccCCC
Confidence 456677777777777777765444433333333 4456689999999999999999999999999999999999999999
Q ss_pred cEEeeeceEE-EecChhh
Q 040779 271 SMVAGERAVL-RGLNLEG 287 (300)
Q Consensus 271 ~~~~G~Pa~~-~~~~~~~ 287 (300)
++++|+|||+ +++..+.
T Consensus 165 ~iv~G~Pa~vir~~~~~~ 182 (190)
T COG0110 165 GIVAGNPARVIRKRDVVA 182 (190)
T ss_pred eEEeCCcceEEEecchhh
Confidence 9999999994 5444443
No 70
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.69 E-value=4.5e-16 Score=129.32 Aligned_cols=102 Identities=31% Similarity=0.465 Sum_probs=89.6
Q ss_pred ccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCc
Q 040779 176 NNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHS 255 (300)
Q Consensus 176 ~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~ 255 (300)
++.++.++.|.+++.+..+++||++++++.++.|++++.||+++.++.++.+.++++||++|++|.++.+.+++.|++++
T Consensus 96 ~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~ig~~~~v~~~~~ig~~~ 175 (197)
T cd03360 96 SAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFIGAGATIIQGVTIGAGA 175 (197)
T ss_pred CCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCCCEEcCCcEECCCCEECCCCEEcCCCEECCCC
Confidence 33344444444444446788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCEECCCCCCCcEEeeec
Q 040779 256 FIGGGSVVSQDVPKYSMVAGER 277 (300)
Q Consensus 256 vv~~~svv~~~v~~~~~~~G~P 277 (300)
+++++++|.+++|+++++.|+|
T Consensus 176 ~v~~~~~v~~~~~~~~~~~g~p 197 (197)
T cd03360 176 IIGAGAVVTKDVPDGSVVVGNP 197 (197)
T ss_pred EECCCCEEcCCCCCCCEEEecC
Confidence 9999999999999999999998
No 71
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.69 E-value=1.3e-15 Score=130.06 Aligned_cols=164 Identities=16% Similarity=0.243 Sum_probs=99.5
Q ss_pred CCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceE
Q 040779 68 SSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNI 147 (300)
Q Consensus 68 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ 147 (300)
.++++.|++.|.+++.|++++.|.+. ++..++.||+++.|..++.|+++++||++|+|..++.|.+
T Consensus 99 ~~~rv~p~a~i~~ga~Ig~~vvI~p~-~Vniga~IGeGt~I~~~a~IG~~v~IG~nv~I~~g~~IgG------------- 164 (269)
T TIGR00965 99 AGFRVVPGAAVRQGAFIAKNVVLMPS-YVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGG------------- 164 (269)
T ss_pred CCEEECCCcEECCCcEECCCCEEeee-EEcCCcEECCCCEECCCcEECCCCEECCCCEEcCCcccCC-------------
Confidence 34555555555555555555555543 4444455555555555555555555555555555544422
Q ss_pred EccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCcee
Q 040779 148 IGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLL 227 (300)
Q Consensus 148 ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v 227 (300)
...+ ...+++.||++|+|++++.|.+++.||++++|+.++.+
T Consensus 165 ---------~~ep-----------------------------~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI 206 (269)
T TIGR00965 165 ---------VLEP-----------------------------LQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFI 206 (269)
T ss_pred ---------Cccc-----------------------------CCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEE
Confidence 0000 01467888888888888888888999998888888888
Q ss_pred cCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEEEecChhhhhhc
Q 040779 228 AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNLEGLRRR 291 (300)
Q Consensus 228 ~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~~~~~~~ 291 (300)
..++.|.++. .+.++.+ .||++++|-+|+.-.++ .+++++- +..++++......+.
T Consensus 207 ~~~~~I~~~~---~g~v~~~--~vp~~svv~~g~~p~~~-g~~~~~~--a~ivk~~d~~t~~k~ 262 (269)
T TIGR00965 207 GQSTKIYDRE---TGEIHYG--RVPAGSVVVSGNLPSKD-GKYSLYC--AVIVKKVDAKTRGKV 262 (269)
T ss_pred CCCCEEeccc---CCceeee--ecCCCcEEecCCeecCC-Cccccce--eEEEEEechhhhhhh
Confidence 8888888877 4444443 58999999888776554 2223322 223455544443333
No 72
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.68 E-value=3e-16 Score=135.30 Aligned_cols=106 Identities=23% Similarity=0.297 Sum_probs=79.5
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.|+.++.|+.++.|+.+ .++.||+++.|++++.|.+++.+|.... ... ....+||++|+||+++.|.++++
T Consensus 142 idI~~~a~IG~g~~I~h~----~givIG~~a~IGdnv~I~~~VtiGg~~~---~~~-~~~p~IGd~V~IGaga~Ilggv~ 213 (273)
T PRK11132 142 VDIHPAAKIGRGIMLDHA----TGIVIGETAVIENDVSILQSVTLGGTGK---TSG-DRHPKIREGVMIGAGAKILGNIE 213 (273)
T ss_pred eEecCcceECCCeEEcCC----CCeEECCCCEECCCCEEcCCcEEecCcc---cCC-CcCCEECCCcEEcCCCEEcCCCE
Confidence 556666777777777542 3456666666666666666666653210 000 12479999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN 284 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~ 284 (300)
||++++||++|+|++|+|+++++.|+|||+.+..
T Consensus 214 IG~~a~IGAgSvV~~dVp~~~~v~G~PArvi~~~ 247 (273)
T PRK11132 214 VGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKP 247 (273)
T ss_pred ECCCCEECCCCEECcccCCCcEEEecCcEEeCcc
Confidence 9999999999999999999999999999975544
No 73
>PLN02296 carbonate dehydratase
Probab=99.67 E-value=2.7e-15 Score=129.98 Aligned_cols=76 Identities=25% Similarity=0.303 Sum_probs=57.9
Q ss_pred ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE-ccCCEECCCCCCC
Q 040779 194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI-GGGSVVSQDVPKY 270 (300)
Q Consensus 194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv-~~~svv~~~v~~~ 270 (300)
++.||+++.|+.++.+ +++.|++++.|+.++.+.++++|+++++|+++++|.++++|++++++ |..+.+.+++.+.
T Consensus 119 ~siIG~~v~IG~~avI-~g~~Igd~v~IG~ga~I~~gv~Ig~~a~IgagSvV~~~~~I~~~~~~~G~PA~~ir~~~~~ 195 (269)
T PLN02296 119 PTIIGDNVTIGHSAVL-HGCTVEDEAFVGMGATLLDGVVVEKHAMVAAGALVRQNTRIPSGEVWAGNPAKFLRKLTEE 195 (269)
T ss_pred CcEeCCCCEECCCcee-cCCEECCCcEECCCcEECCCeEECCCCEECCCCEEecCCEeCCCeEEeccCcEEeCCCCHH
Confidence 3444555555555544 45677777777788888888999999999999999999999999985 5568888887554
No 74
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.66 E-value=1.6e-15 Score=121.56 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=37.2
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceE-EEecC
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAV-LRGLN 284 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~-~~~~~ 284 (300)
++|+++++++.++.+.++++|++++.+++++++.++ +|+++++.|.||+ +++++
T Consensus 78 ~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~ 134 (153)
T cd04645 78 CTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELT 134 (153)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCC
Confidence 456666666666666666777777777777777663 6888888888887 44443
No 75
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.66 E-value=1.8e-15 Score=121.27 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=59.7
Q ss_pred ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE-ccCCEECCCCCCC
Q 040779 194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI-GGGSVVSQDVPKY 270 (300)
Q Consensus 194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv-~~~svv~~~v~~~ 270 (300)
.+.||++++++.++.+. ++.|++++.++.++.+.++++|+++++++.++.+.++..+++++++ +..+.+.++++++
T Consensus 60 ~~~Ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~v~~~~~ig~~~~ig~~~~v~~~~~i~~~~~~~g~~~~~~~~~~~~ 136 (153)
T cd04645 60 PTIIGDNVTVGHGAVLH-GCTIGDNCLIGMGAIILDGAVIGKGSIVAAGSLVPPGKVIPPGSLVAGSPAKVVRELTDE 136 (153)
T ss_pred CeEEcCCcEECCCcEEe-eeEECCCCEECCCCEEcCCCEECCCCEECCCCEECCCCEeCCCCEEeCCcchhcccCCHH
Confidence 34555555555555554 3677888888888888888999999999999999999999999999 6677888888765
No 76
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.66 E-value=6.5e-15 Score=116.14 Aligned_cols=58 Identities=16% Similarity=0.275 Sum_probs=39.0
Q ss_pred eEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEE
Q 040779 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFI 257 (300)
Q Consensus 195 ~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv 257 (300)
+.||++++|+.++++.+++.|++++.+++++.+..++.|+++ |+++++.++ +++++.+
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~---~~~~~v~~~--~~~~~~~ 133 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR---ETGEIYYGR--VPPGSVV 133 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc---CcccEEecc--cCCCCEE
Confidence 344445555555555666667777777777777777777777 888888874 7888433
No 77
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.66 E-value=4e-15 Score=119.55 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=45.7
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCCCcE
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPKYSM 272 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~~~~ 272 (300)
++.||+++.++.++.+..+++|+++++|++++++.++..|++++++.+ .+.+.+++++..+
T Consensus 78 ~~~Ig~~~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~~~~i~~~~~v~G~Pa~~~~~~~~~~~ 139 (155)
T cd04745 78 GCTIGRNALVGMNAVVMDGAVIGEESIVGAMAFVKAGTVIPPRSLIAGSPAKVIRELSDEEV 139 (155)
T ss_pred CCEECCCCEECCCCEEeCCCEECCCCEECCCCEeCCCCEeCCCCEEecCCceEeccCCHHHH
Confidence 355556666666666667788999999999999999999999988744 5777777766543
No 78
>PLN02739 serine acetyltransferase
Probab=99.66 E-value=6.4e-16 Score=135.74 Aligned_cols=106 Identities=26% Similarity=0.383 Sum_probs=78.9
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.|...+.|+.++.|+. +.++.||+++.|+.++.|.+++.+|.... ..-...++||++|+||++++|.++++
T Consensus 206 idI~p~A~IG~Gv~IdH----g~GVVIG~~avIGdnv~I~~gVTIGg~g~----~~g~r~p~IGd~V~IGagA~IlG~V~ 277 (355)
T PLN02739 206 IDIHPAARIGKGILLDH----GTGVVIGETAVIGDRVSILHGVTLGGTGK----ETGDRHPKIGDGALLGACVTILGNIS 277 (355)
T ss_pred cccCCCccccCceEEec----CCceEECCCCEECCCCEEcCCceeCCcCC----cCCCCCcEECCCCEEcCCCEEeCCeE
Confidence 45666666766666654 23556666666666666666665553210 00124589999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN 284 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~ 284 (300)
||++++||+||+|.+|+|+++++.|+|||+.+..
T Consensus 278 IGd~aiIGAGSVV~kDVP~~stvvG~PAriI~~~ 311 (355)
T PLN02739 278 IGAGAMVAAGSLVLKDVPSHSMVAGNPAKLIGFV 311 (355)
T ss_pred ECCCCEECCCCEECCCCCCCcEEEecCCEEeccC
Confidence 9999999999999999999999999999965543
No 79
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.66 E-value=5.6e-15 Score=119.40 Aligned_cols=58 Identities=31% Similarity=0.411 Sum_probs=34.3
Q ss_pred ECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCCCcEEeeeceE-EEecChhhhhh
Q 040779 233 VEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAV-LRGLNLEGLRR 290 (300)
Q Consensus 233 Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~-~~~~~~~~~~~ 290 (300)
|+++++|+.++++.+++.|++++.++++++|..+ +|++++++|.||| +++++....+.
T Consensus 92 Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~~~~~ 152 (161)
T cd03359 92 IGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPECTQEL 152 (161)
T ss_pred EcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchhhhHH
Confidence 3333333333333344455555555555555554 5999999999999 56666655443
No 80
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.65 E-value=6.2e-15 Score=138.36 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=99.4
Q ss_pred ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779 59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG 138 (300)
Q Consensus 59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~ 138 (300)
.+++.+.|++++.|++++.|++++.|++++.|++++.|. ++.||++|.|++++.|.+++.||++|.|++++.+..
T Consensus 264 ~~~~~~~I~~~~~i~~~~~I~~~~~ig~~~~I~~~~~i~-~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~---- 338 (446)
T PRK14353 264 FFSYDTVIGRDVVIEPNVVFGPGVTVASGAVIHAFSHLE-GAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKN---- 338 (446)
T ss_pred EECCceEECCCCEECCCCEECCCCEECCCCEECCCeEEe-ccEECCCcEECCCeEEeccceecCCeEEcCceEEec----
Confidence 344455555555666666666556666666666655554 466666666666666655666666666666666543
Q ss_pred ceeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEE-------Cc
Q 040779 139 QTVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHI-------AH 211 (300)
Q Consensus 139 ~~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i-------~~ 211 (300)
+.|++++.+++++.++ ++.||+++.|+.++++ .+
T Consensus 339 -~~i~~~~~i~~~~~i~--------------------------------------~~~ig~~~~Ig~~~~~~~~~~~~~~ 379 (446)
T PRK14353 339 -AKLGEGAKVNHLTYIG--------------------------------------DATIGAGANIGAGTITCNYDGFNKH 379 (446)
T ss_pred -eEECCCCEECCeeEEc--------------------------------------CcEEcCCcEECCceeeeccccccCC
Confidence 5555555555444431 2233333444333333 34
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
++.||++++++.++.+..++.||+++++|++++|.++ +++++++.+.
T Consensus 380 ~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v~~~--v~~~~~~~g~ 426 (446)
T PRK14353 380 RTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVITED--VPDDALALGR 426 (446)
T ss_pred CcEECCCcEECCCCEEeCCCEECCCCEECCCCEECcc--CCCCCEEEec
Confidence 6888888888888999999999999999999999975 7777777664
No 81
>PLN02694 serine O-acetyltransferase
Probab=99.64 E-value=2.6e-15 Score=129.52 Aligned_cols=106 Identities=25% Similarity=0.324 Sum_probs=83.3
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.|+.++.|+.++.|.. +.++.||+++.|++++.|.+++.+|.. +..+. ..+++||++|+||+++.|.++++
T Consensus 161 vdI~p~A~IG~gv~Idh----~tGVVIGe~a~IGdnv~I~~~VtLGg~---g~~~~-~r~piIGd~V~IGagA~Ilggi~ 232 (294)
T PLN02694 161 VDIHPAAKIGKGILFDH----ATGVVIGETAVIGNNVSILHHVTLGGT---GKACG-DRHPKIGDGVLIGAGATILGNVK 232 (294)
T ss_pred EEeCCcceecCCEEEeC----CCCeEECCCcEECCCCEEeecceeCCc---ccccC-CCccEECCCeEECCeeEECCCCE
Confidence 55666666666666654 236777777777777777777777642 11111 34689999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeeceEEEecC
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLN 284 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~ 284 (300)
||++++|+++++|.+|+|++++++|+|||+.+.+
T Consensus 233 IGd~a~IGAgSVV~kdVP~~~~v~G~PAkiv~~~ 266 (294)
T PLN02694 233 IGEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGK 266 (294)
T ss_pred ECCCCEECCCCEECCcCCCCcEEEccCcEEEccC
Confidence 9999999999999999999999999999976553
No 82
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.63 E-value=2.2e-15 Score=121.24 Aligned_cols=104 Identities=25% Similarity=0.350 Sum_probs=80.0
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.|...+.|+.+.+|+. +.++.||+.+.|++++.|.+++.||..-.-.. ...-+||+++.||+++.|+.+.+
T Consensus 68 ieIhp~A~IG~g~fIdH----g~GvVIgeta~IGddv~I~~gVTLGgtg~~~g----~RhPtIg~~V~IGagAkILG~I~ 139 (194)
T COG1045 68 IEIHPGAKIGRGLFIDH----GTGVVIGETAVIGDDVTIYHGVTLGGTGKESG----KRHPTIGNGVYIGAGAKILGNIE 139 (194)
T ss_pred eeeCCCCeECCceEEcC----CceEEEcceeEECCCeEEEcceEecCCCCcCC----CCCCccCCCeEECCCCEEEcceE
Confidence 44555555555556654 34667777777777777777777774311111 33579999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeeceEEEe
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRG 282 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~ 282 (300)
||||+.||++|+|.+|+|++++++|.|||+..
T Consensus 140 IGd~akIGA~sVVlkdVP~~~tvvGvPArii~ 171 (194)
T COG1045 140 IGDNAKIGAGSVVLKDVPPNATVVGVPARVIG 171 (194)
T ss_pred ECCCCEECCCceEccCCCCCceEecCcceEec
Confidence 99999999999999999999999999999765
No 83
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.63 E-value=1.3e-14 Score=118.00 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=25.5
Q ss_pred ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEc
Q 040779 194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIH 246 (300)
Q Consensus 194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~ 246 (300)
++.||++++|+.++.+. ++.||+++.++.++.+. ++.|++++.+++++++.
T Consensus 82 ~~~Ig~~~~Ig~~~~I~-~~~Ig~~~~Ig~~s~i~-~~~i~~~~~v~~~~~v~ 132 (167)
T cd00710 82 PAYIGDNCFIGFRSVVF-NAKVGDNCVIGHNAVVD-GVEIPPGRYVPAGAVIT 132 (167)
T ss_pred CEEECCCCEECCCCEEE-CCEECCCCEEcCCCEEe-CCEeCCCCEECCCCEEc
Confidence 34555555555555543 45555555555555553 34455555544444333
No 84
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.63 E-value=3.7e-15 Score=120.35 Aligned_cols=82 Identities=26% Similarity=0.287 Sum_probs=62.9
Q ss_pred ceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEE
Q 040779 194 RTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMV 273 (300)
Q Consensus 194 ~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~ 273 (300)
++.|++++.|+++++|.+++.++..... . -...++||++|+||.++.+.++++|+++++|+++++|.+|+|+++++
T Consensus 81 g~~Ig~~~~IG~~~~I~~~v~ig~~~~~---~-~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~dvp~~~~~ 156 (162)
T TIGR01172 81 GVVIGETAVIGDDVTIYHGVTLGGTGKE---K-GKRHPTVGEGVMIGAGAKVLGNIEVGENAKIGANSVVLKDVPPGATV 156 (162)
T ss_pred eEEECCCCEECCCCEEcCCCEECCCccc---c-CCcCCEECCCcEEcCCCEEECCcEECCCCEECCCCEECCCCCCCCEE
Confidence 3455555555555555555555533110 0 03357999999999999999999999999999999999999999999
Q ss_pred eeeceE
Q 040779 274 AGERAV 279 (300)
Q Consensus 274 ~G~Pa~ 279 (300)
.|+|||
T Consensus 157 ~G~Par 162 (162)
T TIGR01172 157 VGVPAR 162 (162)
T ss_pred EeecCC
Confidence 999996
No 85
>PRK10191 putative acyl transferase; Provisional
Probab=99.63 E-value=5.9e-15 Score=116.31 Aligned_cols=102 Identities=24% Similarity=0.331 Sum_probs=81.8
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.|...+.+++++.|..+ .++.|+.++.|++++.+.+++.||++.. ...+++.|||++++|+++.+.++++
T Consensus 42 ~~I~~~a~Ig~~~~I~~g----~~i~I~~~~~IGd~~~I~h~v~IG~~~~-----~~~~~~~IGd~~~Ig~~~~I~~~v~ 112 (146)
T PRK10191 42 YEIQAAATIGRRFTIHHG----YAVVINKNVVAGDDFTIRHGVTIGNRGA-----DNMACPHIGNGVELGANVIILGDIT 112 (146)
T ss_pred cccCCCCEECCCeEECCC----CeEEECCCcEECCCCEECCCCEECCCCc-----CCCCCCEECCCcEEcCCCEEeCCCE
Confidence 455666666666666542 3667777777777777777777776532 2235679999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeeceEEE
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLR 281 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~ 281 (300)
|+++++++++++|.+|+|+++++.|.|||++
T Consensus 113 IG~~~~Igags~V~~dv~~~~~v~G~pA~~~ 143 (146)
T PRK10191 113 IGNNVTVGAGSVVLDSVPDNALVVGEKARVK 143 (146)
T ss_pred ECCCCEECCCCEECCccCCCcEEEccCcEEE
Confidence 9999999999999999999999999999864
No 86
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.62 E-value=1.4e-14 Score=116.17 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=45.1
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcE-EccCCEECCCCCCC
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSF-IGGGSVVSQDVPKY 270 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~v-v~~~svv~~~v~~~ 270 (300)
++.|++++.++.++.+..+++|++++++++++.+.++..++++++ .|..+.+.+++++.
T Consensus 78 ~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~vg~~~~v~~g~~i~~~~v~~G~pa~~~~~~~~~ 137 (154)
T cd04650 78 GAKVGNYVIVGMGAILLNGAKIGDHVIIGAGAVVTPGKEIPDYSLVLGVPAKVVRKLTEE 137 (154)
T ss_pred CcEECCCCEEcCCCEEeCCCEECCCCEECCCCEECCCcEeCCCCEEeccCceEeccCCHH
Confidence 344555555555566666788889999999999999999999999 66679988887764
No 87
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.62 E-value=1.8e-14 Score=140.84 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCceEECCCCEEccccEECcC-cEeCCccEEccCcee-----------cCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779 192 GDRTVIGDNNLIMGSCHIAHD-CKIGNYNIFANNTLL-----------AGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259 (300)
Q Consensus 192 ~~~~~IG~~~~i~~~~~i~~~-v~Ig~~~~i~~~~~v-----------~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~ 259 (300)
..+++||+++++.......++ +.||+++.|++++.+ .++++||++|+||.+++|.++++|+|+++|++
T Consensus 595 ~lGa~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~~~~~v~IG~~~~IG~~a~V~~g~~IGd~a~Ig~ 674 (695)
T TIGR02353 595 LLGVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVMKSDTVTIGDGATLGPGAIVLYGVVMGEGSVLGP 674 (695)
T ss_pred HCCCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEeccccccccccCCeEECCCCEECCCCEECCCCEECCCCEECC
Confidence 347888888888776555444 466666666666666 45899999999999999999999999999999
Q ss_pred CCEECC--CCCCCcEEeeece
Q 040779 260 GSVVSQ--DVPKYSMVAGERA 278 (300)
Q Consensus 260 ~svv~~--~v~~~~~~~G~Pa 278 (300)
+|++.+ ++|+++.+.|+||
T Consensus 675 ~SvV~~g~~vp~~s~~~G~Pa 695 (695)
T TIGR02353 675 DSLVMKGEEVPAHTRWRGNPA 695 (695)
T ss_pred CCEEcCCcccCCCCEEEeccC
Confidence 999999 7999999999997
No 88
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=99.60 E-value=2.2e-15 Score=122.51 Aligned_cols=85 Identities=25% Similarity=0.344 Sum_probs=71.7
Q ss_pred CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcE
Q 040779 193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSM 272 (300)
Q Consensus 193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~ 272 (300)
-++.||+-..++.++.+.+++.+|.. +.++--.++ .|||++|||+++.|+++++||++++|++||+|.||+|++++
T Consensus 167 tgvvigeTAvvg~~vSilH~Vtlggt---gk~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIaAGsvV~kDVP~~~~ 242 (269)
T KOG4750|consen 167 TGVVIGETAVVGDNVSILHPVTLGGT---GKGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLKDVPPNTL 242 (269)
T ss_pred cceeecceeEeccceeeecceeeccc---cccccccCC-cccCCeEEccccEEeCCeeECCCcEEeccceEEeccCCCce
Confidence 46677777777777777888877743 233444556 99999999999999999999999999999999999999999
Q ss_pred EeeeceEEE
Q 040779 273 VAGERAVLR 281 (300)
Q Consensus 273 ~~G~Pa~~~ 281 (300)
.+|+|||..
T Consensus 243 AvGnPAklI 251 (269)
T KOG4750|consen 243 AVGNPAKLI 251 (269)
T ss_pred ecCCchhhc
Confidence 999999943
No 89
>PLN02357 serine acetyltransferase
Probab=99.59 E-value=8.4e-15 Score=129.75 Aligned_cols=107 Identities=24% Similarity=0.318 Sum_probs=79.0
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.|+.++.|+.++.|.. +.++.||+++.|++++.|.+++.+|....- . -...++||++++||+++.|.++++
T Consensus 227 vdI~p~a~IG~Gv~Idh----~~giVIGe~avIGdnV~I~~gVtIGg~g~~---~-g~~~piIGd~V~IGagA~IlggV~ 298 (360)
T PLN02357 227 VDIHPGAKIGQGILLDH----ATGVVIGETAVVGNNVSILHNVTLGGTGKQ---S-GDRHPKIGDGVLIGAGTCILGNIT 298 (360)
T ss_pred eeeCCCCEECCCeEECC----CCceEECCCCEECCCCEEeCCceecCcccc---C-CccCceeCCCeEECCceEEECCeE
Confidence 45666666666666643 125566666666666666666666542110 0 123589999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeeceEEEecCh
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGERAVLRGLNL 285 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~~~~~~ 285 (300)
||++++|+++++|.+|+|++++++|+|||+.+...
T Consensus 299 IGdga~IGAgSVV~~dVP~~~~v~G~PArvv~~~~ 333 (360)
T PLN02357 299 IGEGAKIGAGSVVLKDVPPRTTAVGNPARLIGGKE 333 (360)
T ss_pred ECCCCEECCCCEECcccCCCcEEECCCeEEEccCC
Confidence 99999999999999999999999999999766544
No 90
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=99.59 E-value=1.6e-14 Score=114.25 Aligned_cols=56 Identities=29% Similarity=0.439 Sum_probs=52.7
Q ss_pred ceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779 225 TLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 225 ~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~ 280 (300)
.....++.||++||||.++.+.++++|+++++|+++++|++|+|++++++|+|||+
T Consensus 68 ~~~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~v~~~~v~~G~Pa~~ 123 (145)
T cd03349 68 WPSKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKDVPPYAIVGGNPAKV 123 (145)
T ss_pred ccccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccccCCCeEEEecCCEe
Confidence 44566899999999999999999999999999999999999999999999999995
No 91
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.58 E-value=4e-14 Score=117.11 Aligned_cols=133 Identities=17% Similarity=0.321 Sum_probs=72.0
Q ss_pred eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779 66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN 145 (300)
Q Consensus 66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~ 145 (300)
|+++++|++++.|.+++.||+++.|++++.|.++. +.+.||++|.|+++++|.......+.|+++
T Consensus 11 i~~~~~I~~~a~I~G~V~IG~~~~I~~~a~I~gd~---------------g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~ 75 (192)
T TIGR02287 11 VHPEAYVHPTAVLIGDVILGKRCYVGPLASLRGDF---------------GRIVLKEGANIQDNCVMHGFPGQDTVVEEN 75 (192)
T ss_pred CCCCcEECCCCEEEeeEEECCCCEECCCcEEEccC---------------CceEECCCCEECCCeEEeccCCCCCeECCC
Confidence 55667777777776667777777777766665420 133444444444444442211112444444
Q ss_pred eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779 146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT 225 (300)
Q Consensus 146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~ 225 (300)
+.|++++.+ +++.||++++|+.++.+.+
T Consensus 76 ~~Ig~~a~I--------------------------------------~~siIg~~~~IG~ga~I~~-------------- 103 (192)
T TIGR02287 76 GHVGHGAIL--------------------------------------HGCIVGRNALVGMNAVVMD-------------- 103 (192)
T ss_pred CEECCCCEE--------------------------------------cCCEECCCCEECCCcccCC--------------
Confidence 444444433 2344444444444333332
Q ss_pred eecCceEECCCcEECcCcEEccCcEECCCcEEc-cCCEECCCCCC
Q 040779 226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIG-GGSVVSQDVPK 269 (300)
Q Consensus 226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~-~~svv~~~v~~ 269 (300)
+++||+++.+++++.|.++..|++++++. ..+.+.+.+.+
T Consensus 104 ----g~~IG~~s~Vgags~V~~~~~ip~~~l~~G~Pak~i~~~~~ 144 (192)
T TIGR02287 104 ----GAVIGENSIVAASAFVKAGAEMPAQYLVVGSPAKVIRELSE 144 (192)
T ss_pred ----CeEECCCCEEcCCCEECCCCEECCCeEEEccCCEEeccCCH
Confidence 34466667777777777778888887754 35677666544
No 92
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.58 E-value=6.4e-14 Score=113.22 Aligned_cols=58 Identities=17% Similarity=0.326 Sum_probs=44.1
Q ss_pred cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCCC
Q 040779 213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPKY 270 (300)
Q Consensus 213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~~ 270 (300)
+.|++++.|+.++.+..+++|+++++++.++.+.+++.+++++++++ .+.+.+++++.
T Consensus 90 ~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~~i~~~~vv~g~pa~~i~~~~~~ 148 (161)
T cd03359 90 AQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDTVIPPYSVVSGRPARFIGELPEC 148 (161)
T ss_pred eEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCCEeCCCCEEeccccEEEEecchh
Confidence 44555555555566666778888888888888888899999999987 78888887653
No 93
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=99.57 E-value=2.1e-13 Score=133.39 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=64.0
Q ss_pred CCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC--CCC
Q 040779 192 GDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD--VPK 269 (300)
Q Consensus 192 ~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~--v~~ 269 (300)
.+-++||+++++++.+.++ .. .+..+...-++++||+++++|.++++.+|++|+||+.++.+|.++.| +|+
T Consensus 370 pdLltIG~g~~iad~v~~~------~~-~~~~g~l~~~~i~IG~~afVGn~~vv~pG~~ig~~~llg~~S~~p~~~~~~~ 442 (695)
T TIGR02353 370 PDLTDIGEETFIADGLLMG------NA-RLSGGWFRLGRTRIGRRSFLGNSGYYPPGAKTGDNVLLGVLSMTPKDGKVRE 442 (695)
T ss_pred CcceEECCCcEeccCcEEe------ee-EEeCCeEEEeeEEECCCcEEcCceeECCCCEeCCCCEEeecccCCCCccCCC
Confidence 4555666655554444333 22 33446666778999999999999999999999999999999999984 899
Q ss_pred CcEEeeeceE
Q 040779 270 YSMVAGERAV 279 (300)
Q Consensus 270 ~~~~~G~Pa~ 279 (300)
++.+.|+||.
T Consensus 443 g~~w~GSPa~ 452 (695)
T TIGR02353 443 GVGWLGSPPF 452 (695)
T ss_pred CCEEeCCCCe
Confidence 9999999996
No 94
>PLN02472 uncharacterized protein
Probab=99.57 E-value=7.5e-14 Score=119.43 Aligned_cols=74 Identities=16% Similarity=0.174 Sum_probs=51.2
Q ss_pred eEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779 195 TVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK 269 (300)
Q Consensus 195 ~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~ 269 (300)
+.||+++.|+.++.+ +++.|++++.|+.++.+..+++|++++.+++++++.++..++++.+..+ .+...+++.+
T Consensus 127 tvIG~~v~IG~~s~L-~~~~Igd~v~IG~~svI~~gavIg~~~~Ig~gsvV~~g~~Ip~g~~~~G~PA~~~~~~~~ 201 (246)
T PLN02472 127 TLIDRYVTIGAYSLL-RSCTIEPECIIGQHSILMEGSLVETHSILEAGSVLPPGRRIPTGELWAGNPARFVRTLTN 201 (246)
T ss_pred cEECCCCEECCCcEE-CCeEEcCCCEECCCCEECCCCEECCCCEECCCCEECCCCEeCCCCEEEecCCEEeccCCH
Confidence 344444444444444 3566666666666677777888889999999999999999998888865 4666666544
No 95
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.57 E-value=4.9e-14 Score=109.33 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=31.6
Q ss_pred ceEECCCcEECcCcEEccCcEECCCcEEccCCEECCC
Q 040779 230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD 266 (300)
Q Consensus 230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~ 266 (300)
++.||++||||.+++| ++.|+++++|+++++|+++
T Consensus 73 pV~IG~~~~IG~ga~I--gv~IG~~~vIGaGsvV~k~ 107 (147)
T cd04649 73 VISIGKRCLLGANSGI--GISLGDNCIVEAGLYVTAG 107 (147)
T ss_pred CEEECCCCEECCCCEE--eEEECCCCEECCCCEEeCC
Confidence 4999999999999998 6899999999999999887
No 96
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.56 E-value=1.3e-13 Score=118.98 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=53.8
Q ss_pred CceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEECC
Q 040779 193 DRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ 265 (300)
Q Consensus 193 ~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~ 265 (300)
.++.||++|+|+.++.+..++.||+++++++++.+..++.|++++ .++++.+ .||+++++-+|+.-.+
T Consensus 175 ~~viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV~~gt~I~~~~---~g~v~~g--~vp~~svvv~g~~~~~ 242 (272)
T PRK11830 175 NPVIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFLGQSTKIYDRE---TGEVHYG--RVPAGSVVVPGSLPSK 242 (272)
T ss_pred CCeEEcCCCEECCCCEEcCCCEECCCCEEcCCCEEcCCeEECcCC---CCcEEee--ecCCCcEEecCccccc
Confidence 467778888888888888888888888888888888888888873 5566653 5999999988887766
No 97
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.54 E-value=1.4e-13 Score=114.28 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=24.7
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK 269 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~ 269 (300)
++||+++.++++++|.++..+++++++.+ .+.+.+++.+
T Consensus 107 ~~IG~~s~Vgags~V~~~~~ip~~~~~~G~Pa~~~~~~~~ 146 (196)
T PRK13627 107 AVIGEESIVAAMSFVKAGFQGEKRQLLMGTPARAVRSVSD 146 (196)
T ss_pred cEECCCCEEcCCCEEeCCcCcCCCcEEEecCCEEeccCCH
Confidence 44566666677777777777776655444 4777666533
No 98
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.53 E-value=8.5e-14 Score=110.92 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=62.2
Q ss_pred hhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEcc
Q 040779 49 RLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMT 128 (300)
Q Consensus 49 ~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~ 128 (300)
...+.+++.++|+|++.+-.++.|++++.|.+++.|+.+. ..-.|+.++.|.|+++|+.... ..+.||++++|++
T Consensus 9 ~~~P~i~~~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~---~~I~IG~~tNIQDg~ViH~~~~--~p~~IG~~vtIGH 83 (176)
T COG0663 9 GLSPKIDPTAFVAPSATVIGDVRIGAGVSIWPGAVLRGDV---EPIRIGARTNIQDGVVIHADPG--YPVTIGDDVTIGH 83 (176)
T ss_pred CCCCCCCCceEECCCCEEEEeEEECCCCEECCceEEEccC---CceEECCCceecCCeEEecCCC--CCeEECCCcEEcC
Confidence 3456788999999999888999999999999888888776 4556666666666666655433 3788888888888
Q ss_pred CcEEcc
Q 040779 129 GAVVGD 134 (300)
Q Consensus 129 ~~~i~~ 134 (300)
++.|.+
T Consensus 84 ~aivHG 89 (176)
T COG0663 84 GAVVHG 89 (176)
T ss_pred ccEEEE
Confidence 888754
No 99
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=99.51 E-value=3e-13 Score=100.59 Aligned_cols=99 Identities=25% Similarity=0.332 Sum_probs=73.9
Q ss_pred eeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcE
Q 040779 171 VDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCH 250 (300)
Q Consensus 171 ~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~ 250 (300)
+.|++++.+++++.+.. ...+.||+++.|+.++.|.+++.|+.++.+ ...++++|+++++++.++.+.++++
T Consensus 3 ~~i~~~~~ig~~~~i~~----~~~~~ig~~~~Ig~~~~i~~~~~i~~~~~~----~~~~~~~Ig~~~~Ig~~~~i~~~~~ 74 (101)
T cd03354 3 IDIHPGAKIGPGLFIDH----GTGIVIGETAVIGDNCTIYQGVTLGGKGKG----GGKRHPTIGDNVVIGAGAKILGNIT 74 (101)
T ss_pred eEeCCCCEECCCEEECC----CCeEEECCCCEECCCCEEcCCCEECCCccC----CcCCCCEECCCcEEcCCCEEECcCE
Confidence 34555555555555533 124556666666666655555555554433 1467789999999999999999999
Q ss_pred ECCCcEEccCCEECCCCCCCcEEeeec
Q 040779 251 IGSHSFIGGGSVVSQDVPKYSMVAGER 277 (300)
Q Consensus 251 I~~~~vv~~~svv~~~v~~~~~~~G~P 277 (300)
|+++++++++++|.+++|++.++.|+|
T Consensus 75 Ig~~~~i~~~~~i~~~~~~~~~~~G~P 101 (101)
T cd03354 75 IGDNVKIGANAVVTKDVPANSTVVGVP 101 (101)
T ss_pred ECCCCEECCCCEECcccCCCCEEEeCC
Confidence 999999999999999999999999998
No 100
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=99.49 E-value=3.2e-13 Score=101.70 Aligned_cols=104 Identities=28% Similarity=0.344 Sum_probs=72.9
Q ss_pred eeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcC--cEeCCccEEccCceecCceEECCCcEECcCcEEccCc
Q 040779 172 DVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHD--CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFC 249 (300)
Q Consensus 172 ~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~--v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~ 249 (300)
.||+++.|++++.|... .++.||+++.|+.++.|... ........+ ....+..+++||++++++.++.+.+++
T Consensus 3 ~Ig~~~~I~~~~~i~~~----~~v~IG~~~~Ig~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~Ig~~~~ig~~~~i~~~~ 77 (109)
T cd04647 3 SIGDNVYIGPGCVISAG----GGITIGDNVLIGPNVTIYDHNHDIDDPERPI-EQGVTSAPIVIGDDVWIGANVVILPGV 77 (109)
T ss_pred EECCCcEECCCCEEecC----CceEECCCCEECCCCEEECCCCCCCcccccc-ccccccCCeEECCCCEECCCCEEcCCC
Confidence 44555555555554321 24555555555555555433 111111111 234567789999999999999999999
Q ss_pred EECCCcEEccCCEECCCCCCCcEEeeeceEE
Q 040779 250 HIGSHSFIGGGSVVSQDVPKYSMVAGERAVL 280 (300)
Q Consensus 250 ~I~~~~vv~~~svv~~~v~~~~~~~G~Pa~~ 280 (300)
.|++++++++++.|.+++|+++++.|.|||.
T Consensus 78 ~ig~~~~i~~~~~v~~~i~~~~i~~g~pa~~ 108 (109)
T cd04647 78 TIGDGAVVGAGSVVTKDVPPNSIVAGNPAKV 108 (109)
T ss_pred EECCCCEECCCCEEeeECCCCCEEEccccEe
Confidence 9999999999999999999999999999984
No 101
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.47 E-value=2.7e-13 Score=114.18 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=40.2
Q ss_pred CceEECCCcEECcCcEEccCcEECCCcEEccCCEECCCCCCCcEEee
Q 040779 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQDVPKYSMVAG 275 (300)
Q Consensus 229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~v~~~~~~~G 275 (300)
.++.|||+|+||+++.+..|+.++++|+|++|..|++|.|.+....|
T Consensus 181 ~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki~~~~~g 227 (271)
T COG2171 181 NPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKIYDRVAG 227 (271)
T ss_pred CCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcceEEeecc
Confidence 47888889999999888888899999999999999888888877776
No 102
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.47 E-value=1.3e-12 Score=109.35 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=29.3
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
++.||++++++.++.+..+++||+++.++++++|.++ +++++++.+.
T Consensus 108 ~~~Ig~~~~Ig~~~~I~~gv~Ig~~~~I~~gs~v~~~--i~~~~~~~G~ 154 (204)
T TIGR03308 108 RVTIGHDVWIGHGAVILPGVTIGNGAVIAAGAVVTKD--VAPYTIVAGV 154 (204)
T ss_pred CeEECCCCEECCCCEECCCCEECCCCEECCCCEECCC--CCCCcEEEec
Confidence 3444444444555555556666777777777777764 7777777664
No 103
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.46 E-value=1.8e-12 Score=108.28 Aligned_cols=64 Identities=25% Similarity=0.509 Sum_probs=37.9
Q ss_pred CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779 69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV 132 (300)
Q Consensus 69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i 132 (300)
...+++.+.+.+++.||+++.|++++.|++++.||+++.|++++.|.+++.||+++.|+.++.+
T Consensus 87 ~~~i~~~a~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i 150 (201)
T TIGR03570 87 ATLIHPSAIVSPSASIGEGTVIMAGAVINPDVRIGDNVIINTGAIVEHDCVIGDYVHIAPGVTL 150 (201)
T ss_pred eEEecCCeEECCCCEECCCCEECCCCEECCCCEECCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence 3455566666666666667777666666666666666666655555555555555444444333
No 104
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=99.45 E-value=2.3e-12 Score=106.92 Aligned_cols=61 Identities=28% Similarity=0.568 Sum_probs=33.8
Q ss_pred CceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccC
Q 040779 69 SSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129 (300)
Q Consensus 69 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~ 129 (300)
...+++.+.+.+++.|++++.|++++.|+++++||+++.|++++.|++++.||++|.|+.+
T Consensus 84 ~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i~~~ 144 (197)
T cd03360 84 ATLIHPSAVVSPSAVIGEGCVIMAGAVINPDARIGDNVIINTGAVIGHDCVIGDFVHIAPG 144 (197)
T ss_pred ceEECCCeEECCCCEECCCCEEcCCCEECCCCEECCCeEECCCCEECCCCEECCCCEECCC
Confidence 3455555666666666666666666666666666655555555554444444444444433
No 105
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=99.43 E-value=4.4e-12 Score=98.50 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=22.5
Q ss_pred ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEE
Q 040779 70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLL 108 (300)
Q Consensus 70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I 108 (300)
++|.|.+++.+.+.||+++.|.+++.+..++.||+++.|
T Consensus 2 ~~i~~~~~V~~~a~IG~GtvI~~gavV~~~a~IG~~~iI 40 (147)
T cd04649 2 VRIADADRVRLGAYLAEGTTVMHEGFVNFNAGTLGNCMV 40 (147)
T ss_pred eEecCCCEECCCCEECCCcEECCCCEEccCCEECCCeEE
Confidence 345555555555566666666666666655555555555
No 106
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.40 E-value=3.6e-12 Score=110.15 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=23.8
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEccCCEECCC
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD 266 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~ 266 (300)
+.||++|+||.++.| ++.||++|+|++|++|+.+
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtag 284 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAG 284 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCC
Confidence 677777777777776 6777777777777776654
No 107
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=99.39 E-value=5.9e-12 Score=96.41 Aligned_cols=48 Identities=17% Similarity=0.305 Sum_probs=22.6
Q ss_pred CCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 86 QGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 86 ~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
+++.|+++++|+++++||+++.|++++.|.+++.||++|.|++++.+.
T Consensus 3 ~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~ 50 (119)
T cd03358 3 DNCIIGTNVFIENDVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFT 50 (119)
T ss_pred CCCEECCCcEECCCcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEe
Confidence 344444444444444444444444444444445555555555554443
No 108
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.37 E-value=1.2e-11 Score=105.29 Aligned_cols=133 Identities=19% Similarity=0.307 Sum_probs=78.5
Q ss_pred eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779 66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN 145 (300)
Q Consensus 66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~ 145 (300)
++.++.|++++.|.+.+.||+++.|++++.|.+++.||++|.|++++.|.+++.||++|+|+.++.+.+ . +
T Consensus 83 vg~~~~I~~~a~I~g~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~-----~-~--- 153 (231)
T TIGR03532 83 KNINARIEPGAIIRDQVIIGDNAVIMMGAVINIGAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG-----V-I--- 153 (231)
T ss_pred cccccEECCCCEEeCCeEECCCCEEecCcccCCCeEECCCCEEccccccCCCcEECCCcEEcCCcEEcc-----c-c---
Confidence 455666666666666666666666666666666666666666666666655566666666655555532 0 0
Q ss_pred eEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCc
Q 040779 146 NIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNT 225 (300)
Q Consensus 146 ~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~ 225 (300)
. ... ..++.|+++++++.++
T Consensus 154 ----------------------------------~------~~~--------------------~~~v~IGd~v~IG~gs 173 (231)
T TIGR03532 154 ----------------------------------E------PPS--------------------AKPVVIEDNVLIGANA 173 (231)
T ss_pred ----------------------------------c------ccc--------------------CCCeEECCCcEECCCC
Confidence 0 000 1233444444444555
Q ss_pred eecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECCCCCC
Q 040779 226 LLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQDVPK 269 (300)
Q Consensus 226 ~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~~v~~ 269 (300)
.+..++.||++++++++++|.+ .+++++++.+. +.+.+.+++
T Consensus 174 vI~~g~~Ig~~~~IgagsvV~~--di~~~~vv~G~PA~~i~~~~~ 216 (231)
T TIGR03532 174 VILEGVRVGKGAVVAAGAIVTE--DVPPNTVVAGVPAKVIKQVDE 216 (231)
T ss_pred EEcCCCEECCCCEECCCCEEcc--ccCCCcEEEecCCEEeccCCh
Confidence 5556677777777777777776 37777777653 555555544
No 109
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.37 E-value=7.2e-12 Score=107.78 Aligned_cols=57 Identities=12% Similarity=0.203 Sum_probs=39.0
Q ss_pred EECcCcEeCCccEEccCce----ecCc----eEECCCcEECcCcEEccCcEECCCcEEccCCEECCC
Q 040779 208 HIAHDCKIGNYNIFANNTL----LAGH----VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQD 266 (300)
Q Consensus 208 ~i~~~v~Ig~~~~i~~~~~----v~~~----v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~~ 266 (300)
.|.+++.||+++.|++++. +.++ +.||++|+||.++.| +..||++|+|++|++|++.
T Consensus 195 ~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 195 RISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred EEccCCEECCCCEECCCceecceecCCCcccEEECCCcEECCCCEE--CeEECCCCEECCCCEEeCC
Confidence 3344444444444444444 3345 888888888888888 7888888888888888776
No 110
>PRK10502 putative acyl transferase; Provisional
Probab=99.35 E-value=2.1e-11 Score=100.47 Aligned_cols=47 Identities=13% Similarity=0.169 Sum_probs=30.1
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
.+.||++++|+.++.+..+++||+++++++++++.+ .+++++++++.
T Consensus 124 ~i~Igd~~~Ig~~a~I~~Gv~Ig~~~vIga~svV~~--~v~~~~v~~G~ 170 (182)
T PRK10502 124 PIVIGEGCWLAADVFVAPGVTIGSGAVVGARSSVFK--SLPANTICRGN 170 (182)
T ss_pred CEEEcCCcEEcCCCEEcCCCEECCCCEECCCCEEec--ccCCCcEEECC
Confidence 344444555555555556667777777777777775 47888777664
No 111
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=99.33 E-value=3.7e-11 Score=99.79 Aligned_cols=56 Identities=14% Similarity=0.164 Sum_probs=38.5
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc-CCEECCCCCC
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG-GSVVSQDVPK 269 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~-~svv~~~v~~ 269 (300)
.+.||+++.++.++.+..+++||++|+++++++|.+. +++++++.+ .+.+.+...+
T Consensus 130 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v~~~--i~~~~~~~G~Pa~~ik~~~~ 186 (192)
T PRK09677 130 AVVIGQRVWIGENVTILPGVSIGNGCIVGANSVVTKS--IPENTVIAGNPAKIIKKYNH 186 (192)
T ss_pred CeEEcCCcEECCCCEEcCCCEECCCCEECCCCEECcc--cCCCcEEEecCCEEEeccCc
Confidence 4555555666666666677788888888888888874 777777765 4666665543
No 112
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=99.30 E-value=4.1e-11 Score=103.69 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=27.7
Q ss_pred cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEEC
Q 040779 213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIG 252 (300)
Q Consensus 213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~ 252 (300)
+.||++|.++.++.+ ++.||++|+||++++|.++++|-
T Consensus 251 V~IGe~~lIGagA~I--GI~IGd~~iIGAGavVtagTkI~ 288 (341)
T TIGR03536 251 ISVGEGCLLGANAGI--GIPLGDRCTVEAGLYITAGTKVA 288 (341)
T ss_pred EEECCCcEECCCCEE--eeEECCCCEECCCCEEeCCcEEE
Confidence 566666666666666 67888888888888888776663
No 113
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=99.27 E-value=4.4e-11 Score=99.58 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=37.8
Q ss_pred cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECCCC
Q 040779 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQDV 267 (300)
Q Consensus 211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~~v 267 (300)
..+.||++++|+.++.+..+++||++++|+++++|.++ +++++++++. +.+.+++
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~kd--vp~~~v~~G~PAk~i~~~ 185 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTKD--IPPNVVAAGVPCRVIREI 185 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEccc--CCCCcEEEeeCCEEeccC
Confidence 34555555555555666677788888888888888874 7888887664 6666665
No 114
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=2.7e-11 Score=112.45 Aligned_cols=104 Identities=15% Similarity=0.180 Sum_probs=60.1
Q ss_pred chhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEe
Q 040779 36 RPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF 115 (300)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~ 115 (300)
+..+......++++|..++-+......+ .....-..+.|- ++.+.+.+.+.++.++.||.++.|+.++.|.
T Consensus 279 ~~syd~vSkDiI~RW~YP~Vpd~~~~~~---q~~~~~r~~IYk------~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~ 349 (673)
T KOG1461|consen 279 LRSYDLVSKDIIQRWTYPLVPDINFSGN---QTFSLERRNIYK------SPDVVLSHSVIVGANVVIGAGTKIGSGSKIS 349 (673)
T ss_pred cHHHHHHHHHHHHhhcccccccccCCCC---ceeeeccccccc------CccceehhhccccceEEecccccccCCCeee
Confidence 3444455566677777666655444321 001111122333 3334444444444445555555555556666
Q ss_pred CCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 116 GNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 116 ~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
|+.||.+|.||.+++|.+ +.|+++|.|+.+|.|
T Consensus 350 -NSVIG~~c~IgsN~~I~~-----S~iw~~v~Igdnc~I 382 (673)
T KOG1461|consen 350 -NSVIGANCRIGSNVRIKN-----SFIWNNVTIGDNCRI 382 (673)
T ss_pred -cceecCCCEecCceEEee-----eeeecCcEECCCceE
Confidence 888888888888888877 777777777777777
No 115
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=99.25 E-value=3.2e-11 Score=91.44 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=28.2
Q ss_pred CcEECCCcEEccCCEECCC--CCCCcEEeeeceEEEecChhhh
Q 040779 248 FCHIGSHSFIGGGSVVSQD--VPKYSMVAGERAVLRGLNLEGL 288 (300)
Q Consensus 248 ~~~I~~~~vv~~~svv~~~--v~~~~~~~G~Pa~~~~~~~~~~ 288 (300)
+..+-|+|.|..+++++.+ +|+++.+.|+|+.+.+..++-+
T Consensus 119 rCVlkdCc~ild~tVlPpet~vppy~~~~g~p~~~~G~~P~ct 161 (184)
T KOG3121|consen 119 RCVLKDCCRILDDTVLPPETLVPPYSTIGGNPAQVVGTEPRCT 161 (184)
T ss_pred ceEhhhheeccCCcccCcccccCCceEEcCCCceeeccCchhh
Confidence 3445556666666666665 5999999999999877655543
No 116
>PRK10191 putative acyl transferase; Provisional
Probab=99.24 E-value=1.7e-10 Score=91.07 Aligned_cols=78 Identities=23% Similarity=0.380 Sum_probs=50.1
Q ss_pred ceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECCC-------cEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779 57 VYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGSA-------AKLGDGCLLYPSSHIFGNTELGDHCILM 127 (300)
Q Consensus 57 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~~-------~~Ig~~~~I~~~~~I~~~~~IG~~~~I~ 127 (300)
..+|++.+.+++++.|++ ++.|++++.||+++.|++++.|+.. +.||++++|++++.+.+++.||+++.|+
T Consensus 41 g~~I~~~a~Ig~~~~I~~g~~i~I~~~~~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~~~v~IG~~~~Ig 120 (146)
T PRK10191 41 GYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITIGNNVTVG 120 (146)
T ss_pred CcccCCCCEECCCeEECCCCeEEECCCcEECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEeCCCEECCCCEEC
Confidence 445666666777777777 4566666666666666666666532 4566666666666666666666666666
Q ss_pred cCcEEcc
Q 040779 128 TGAVVGD 134 (300)
Q Consensus 128 ~~~~i~~ 134 (300)
.++.+..
T Consensus 121 ags~V~~ 127 (146)
T PRK10191 121 AGSVVLD 127 (146)
T ss_pred CCCEECC
Confidence 6666654
No 117
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=99.24 E-value=1.8e-10 Score=93.06 Aligned_cols=79 Identities=20% Similarity=0.351 Sum_probs=49.3
Q ss_pred cceecCccceeCCCceECCC--cEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcE
Q 040779 56 HVYGDKYETSSSSSSFIHPT--SIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCI 125 (300)
Q Consensus 56 ~~~~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~ 125 (300)
....|++.++|+++++|+.+ +.|++++.||++|.|++++.|+.. ++||++++|++++.|.++++||+++.
T Consensus 60 ~~~~I~~~~~Ig~~~~i~~~~g~~Ig~~~~IG~~~~I~~~v~ig~~~~~~~~~~~~Ig~~v~Ig~~a~I~~~v~IG~~~~ 139 (162)
T TIGR01172 60 TGVDIHPGARIGRGVFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKEKGKRHPTVGEGVMIGAGAKVLGNIEVGENAK 139 (162)
T ss_pred eCeEeCCCCEECCCeEECCCCeEEECCCCEECCCCEEcCCCEECCCccccCCcCCEECCCcEEcCCCEEECCcEECCCCE
Confidence 34566666677777777543 566666666666666666666632 35666666666666666666666666
Q ss_pred EccCcEEcc
Q 040779 126 LMTGAVVGD 134 (300)
Q Consensus 126 I~~~~~i~~ 134 (300)
|+.++++..
T Consensus 140 Iga~s~V~~ 148 (162)
T TIGR01172 140 IGANSVVLK 148 (162)
T ss_pred ECCCCEECC
Confidence 666666554
No 118
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.23 E-value=1.3e-10 Score=94.62 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=36.0
Q ss_pred CcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 210 AHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 210 ~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
.+++.||++++|+.++.+..+++||++++||++++|.++ +++++++.+.
T Consensus 116 ~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~~--vp~~~vv~G~ 164 (169)
T cd03357 116 AKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTKD--IPANVVAAGN 164 (169)
T ss_pred cCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCcEEEcc
Confidence 345666666666666666778888888888888888874 8888876654
No 119
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=99.23 E-value=1.7e-10 Score=99.38 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=25.0
Q ss_pred cEeCCccEEccCceecCceEECCCcEECcCcEEccCcEE
Q 040779 213 CKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHI 251 (300)
Q Consensus 213 v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I 251 (300)
+.||++|.|+.++.+ ++.||++|+||++++|.+++.+
T Consensus 226 V~IGe~~~IGagA~I--GI~IGd~~VVGAGaVVtkgT~v 262 (319)
T TIGR03535 226 ISIGERCLLGANSGL--GISLGDDCVVEAGLYVTAGTKV 262 (319)
T ss_pred EEECCCcEECCCCEE--CeEECCCCEECCCCEEeCCeEE
Confidence 555555555556665 5777777777777777777655
No 120
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=99.23 E-value=6.3e-11 Score=99.95 Aligned_cols=114 Identities=22% Similarity=0.325 Sum_probs=59.3
Q ss_pred CCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeeecCcccccC
Q 040779 87 GVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKCQDMKYKSG 166 (300)
Q Consensus 87 ~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~~~~~~~~~ 166 (300)
+++|.|++.++..+.|+++++|.+.++|.-++.++++|.|.-++.++. ...||++++|+.++.|+.-. +..
T Consensus 108 g~RI~p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~----~a~VGkn~higgGa~I~GVL-----ep~ 178 (271)
T COG2171 108 GVRIVPGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGS----CAQVGKNSHIGGGASIGGVL-----EPL 178 (271)
T ss_pred ceeecCccEEeeccEECCCcEEcccceEEECcccCcceEEeeeeeeec----cEEECCCcccCCcceEeEEe-----cCC
Confidence 355555555555555555555555555555555555555555555543 24555555555555553211 111
Q ss_pred CcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEE
Q 040779 167 DECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVV 233 (300)
Q Consensus 167 ~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~I 233 (300)
. ...+.||++|+|+.++.+..++.+|++|++.+++.+..++.|
T Consensus 179 ~------------------------a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~~tki 221 (271)
T COG2171 179 Q------------------------ANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQDTKI 221 (271)
T ss_pred C------------------------CCCeEECCccEeccccceEeeeEeCCCcEEecceEEeCCcce
Confidence 1 345566666666666555556666655555555554444333
No 121
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.18 E-value=2.7e-10 Score=81.06 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=65.4
Q ss_pred eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779 66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN 145 (300)
Q Consensus 66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~ 145 (300)
|++++.|++++.|. ++.|++++.|++++.|. ++.+++++.|++++.|. ++.+++++.|++++.+.+ +.++++
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~-~svi~~~~~i~~~~~v~~-----~ii~~~ 73 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLE-NCIIGNGAVIGEKCKLKD-----CLVGSG 73 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEe-ccEEeCCCEECCCCEEcc-----CEECCC
Confidence 56778888888886 68888888888888887 58888999999999886 888999999999988876 777777
Q ss_pred eEEcccc
Q 040779 146 NIIGHHA 152 (300)
Q Consensus 146 ~~ig~~~ 152 (300)
+.|++++
T Consensus 74 ~~i~~~~ 80 (81)
T cd04652 74 YRVEAGT 80 (81)
T ss_pred cEeCCCC
Confidence 7777653
No 122
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=2.3e-10 Score=104.01 Aligned_cols=108 Identities=21% Similarity=0.301 Sum_probs=78.4
Q ss_pred hhhhhhccchhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCE
Q 040779 28 SFLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCL 107 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~ 107 (300)
.|+.+..|+.+......++...... ........+.. +.. ++|.+.+.|++++.|++++.|++++.||++|.
T Consensus 217 ~W~dig~p~d~~~a~~~~~~~~~~~---~~~~~~~~~~~-----~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~ 287 (358)
T COG1208 217 YWLDIGTPEDLLEANELLLRGDGKS---PLGPIEEPVVI-----IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVT 287 (358)
T ss_pred eEEeCCCHHHHHHHHHHHHhccccc---ccccccccccc-----ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCE
Confidence 6999999998877664333222211 11111111111 555 77778888888888888888888888889999
Q ss_pred ECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEcc
Q 040779 108 LYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGH 150 (300)
Q Consensus 108 I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~ 150 (300)
|++++.|. ++.|.++|.|++++++.+ ++|+++|.|++
T Consensus 288 I~~~~~i~-~Sii~~~~~i~~~~~i~~-----sIi~~~~~ig~ 324 (358)
T COG1208 288 IGNGVEIK-NSIIMDNVVIGHGSYIGD-----SIIGENCKIGA 324 (358)
T ss_pred ECCCcEEE-eeEEEcCCEECCCCEEee-----eEEcCCcEECC
Confidence 99888888 899999999999999987 77777777776
No 123
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.16 E-value=4.3e-10 Score=102.43 Aligned_cols=19 Identities=5% Similarity=-0.127 Sum_probs=12.7
Q ss_pred hhhhhccchhhHHHHHHHH
Q 040779 29 FLLLKVRRPCLSSLSTLFL 47 (300)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~ 47 (300)
|..+..|+.++.....++.
T Consensus 218 w~digt~~dl~~a~~~ll~ 236 (353)
T TIGR01208 218 WKDTGKPEDLLDANRLILD 236 (353)
T ss_pred EEeCCCHHHHHHHHHHHHh
Confidence 7777778877776654433
No 124
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=6.9e-11 Score=109.80 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=43.6
Q ss_pred CCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 97 GSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 97 ~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
..+..-++++++.+.+.++.++.||.++.|+.++.|.+ ++||.+|.||.++.|
T Consensus 313 r~~IYk~~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~N-----SVIG~~c~IgsN~~I 365 (673)
T KOG1461|consen 313 RRNIYKSPDVVLSHSVIVGANVVIGAGTKIGSGSKISN-----SVIGANCRIGSNVRI 365 (673)
T ss_pred ccccccCccceehhhccccceEEecccccccCCCeeec-----ceecCCCEecCceEE
Confidence 34555677777777788888888999999999999988 888888888888888
No 125
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=99.16 E-value=3e-10 Score=93.40 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=30.8
Q ss_pred cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
..+.||++++|++++.+..+++||++++|+++++|.++ ++++++++++
T Consensus 128 ~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~d--i~~~~i~~G~ 175 (183)
T PRK10092 128 KPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKD--VPDNVVVGGN 175 (183)
T ss_pred CCeEECCCcEECCCCEECCCCEECCCCEECCCCEEccc--cCCCcEEEec
Confidence 34445555555555555666777777777777777764 6777777654
No 126
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=99.15 E-value=3.3e-10 Score=91.50 Aligned_cols=84 Identities=25% Similarity=0.411 Sum_probs=71.6
Q ss_pred CCcceecCccceeCCCceECCC--cEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCC
Q 040779 54 LPHVYGDKYETSSSSSSFIHPT--SIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDH 123 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~ 123 (300)
+.....|||.++||++.+|+.+ ..|++.+.||++|.|..++.|++. -+||+++.|++++.|-+++.||++
T Consensus 64 ~~~gieIhp~A~IG~g~fIdHg~GvVIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~I~IGd~ 143 (194)
T COG1045 64 FLFGIEIHPGAKIGRGLFIDHGTGVVIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGNIEIGDN 143 (194)
T ss_pred hhcceeeCCCCeECCceEEcCCceEEEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcceEECCC
Confidence 4556788999999999999865 678899999999999999999852 379999999999998889999999
Q ss_pred cEEccCcEEccCCC
Q 040779 124 CILMTGAVVGDDLP 137 (300)
Q Consensus 124 ~~I~~~~~i~~~~~ 137 (300)
+.|+.++++..+.+
T Consensus 144 akIGA~sVVlkdVP 157 (194)
T COG1045 144 AKIGAGSVVLKDVP 157 (194)
T ss_pred CEECCCceEccCCC
Confidence 99999999987543
No 127
>PLN02739 serine acetyltransferase
Probab=99.14 E-value=6.8e-10 Score=98.03 Aligned_cols=81 Identities=26% Similarity=0.409 Sum_probs=69.4
Q ss_pred ceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcEE
Q 040779 57 VYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCIL 126 (300)
Q Consensus 57 ~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~I 126 (300)
...|++.++||++++|+. ++.|++++.||++|.|..++.|++ ..+||++++|++++.|.++++||+++.|
T Consensus 205 GidI~p~A~IG~Gv~IdHg~GVVIG~~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~V~IGagA~IlG~V~IGd~aiI 284 (355)
T PLN02739 205 GIDIHPAARIGKGILLDHGTGVVIGETAVIGDRVSILHGVTLGGTGKETGDRHPKIGDGALLGACVTILGNISIGAGAMV 284 (355)
T ss_pred CcccCCCccccCceEEecCCceEECCCCEECCCCEEcCCceeCCcCCcCCCCCcEECCCCEEcCCCEEeCCeEECCCCEE
Confidence 456788888999999974 788999999999999999999974 4789999999999999889999999999
Q ss_pred ccCcEEccCCC
Q 040779 127 MTGAVVGDDLP 137 (300)
Q Consensus 127 ~~~~~i~~~~~ 137 (300)
+.++++..+.+
T Consensus 285 GAGSVV~kDVP 295 (355)
T PLN02739 285 AAGSLVLKDVP 295 (355)
T ss_pred CCCCEECCCCC
Confidence 99999876543
No 128
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.14 E-value=4.1e-10 Score=79.08 Aligned_cols=68 Identities=31% Similarity=0.576 Sum_probs=49.2
Q ss_pred eeCCCceECCCcEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779 65 SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV 132 (300)
Q Consensus 65 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i 132 (300)
++++++.|+++++|.+++.||+++.|++++.|... +.|++++++++++.+.+++.||+++.|++++.+
T Consensus 2 ~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v 77 (78)
T cd00208 2 FIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVV 77 (78)
T ss_pred EECCCeEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEeCCCEECCCCEECcCcEe
Confidence 46777777777777777778888888877777743 667777777777777666777777777666654
No 129
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.13 E-value=5.3e-10 Score=102.88 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=72.9
Q ss_pred hhhhhhccchhhHHHHHHHHHhhcc-cCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCC
Q 040779 28 SFLLLKVRRPCLSSLSTLFLRRLST-ALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGC 106 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~ 106 (300)
.|..+..+..++.....++...... .+.+...+.+.+.+.+.++|++++.|. ++.|+++|.|+. .+. ++.|+++|
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~Ig~~~~I~~--~v~-~s~ig~~~ 315 (380)
T PRK05293 240 YWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVK-NSLVVEGCVVYG--TVE-HSVLFQGV 315 (380)
T ss_pred EEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEe-cCEECCCCEEcc--eec-ceEEcCCC
Confidence 4677777776665543222211110 011222333334445566666666663 555666666642 233 57788888
Q ss_pred EECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEe
Q 040779 107 LLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG 155 (300)
Q Consensus 107 ~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~ 155 (300)
.|++++.|. ++.|++++.|++++.+.+ ++|++++.|++++.+.
T Consensus 316 ~I~~~~~i~-~svi~~~~~i~~~~~i~~-----~ii~~~~~i~~~~~i~ 358 (380)
T PRK05293 316 QVGEGSVVK-DSVIMPGAKIGENVVIER-----AIIGENAVIGDGVIIG 358 (380)
T ss_pred EECCCCEEE-CCEEeCCCEECCCeEEeE-----EEECCCCEECCCCEEc
Confidence 888888887 788888888888888876 8888888888877773
No 130
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.12 E-value=9.6e-10 Score=77.98 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=47.8
Q ss_pred CCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccce
Q 040779 67 SSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNN 146 (300)
Q Consensus 67 ~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~ 146 (300)
++.+.|+++++|++++.|+++|.|++++.|. ++.+++++.|++++.|. ++.+++++.+++++.+.. ..++++++
T Consensus 3 ~~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~-~sii~~~~~v~~~~~~~~----~~~ig~~~ 76 (80)
T cd05824 3 DPSAKIGKTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVK-SSIVGWNSTVGRWTRLEN----VTVLGDDV 76 (80)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEe-CCEEeCCCEECCCcEEec----CEEECCce
Confidence 3445555555555556666666666666665 56666777777777766 567777777777766654 24555555
Q ss_pred EEc
Q 040779 147 IIG 149 (300)
Q Consensus 147 ~ig 149 (300)
.++
T Consensus 77 ~i~ 79 (80)
T cd05824 77 TIK 79 (80)
T ss_pred EEC
Confidence 544
No 131
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.11 E-value=1.3e-09 Score=80.73 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=55.0
Q ss_pred ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779 64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG 143 (300)
Q Consensus 64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig 143 (300)
+.+++++.|.+++.+.+.+.|++++.|++++.|.+++.||+++.|+. .|. ++.|++++.+.++++|.+ ++||
T Consensus 12 v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~-~svi~~~~~i~~~~~lg~-----siIg 83 (101)
T cd05635 12 IYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVE-DSIIEGYSNKQHDGFLGH-----SYLG 83 (101)
T ss_pred EEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EEC-ccEEcCCCEecCcCEEee-----eEEC
Confidence 44556666666666666666666666666666666666666666653 343 667777777777777765 7777
Q ss_pred cceEEccccEE
Q 040779 144 CNNIIGHHAVV 154 (300)
Q Consensus 144 ~~~~ig~~~~i 154 (300)
+++.+++++..
T Consensus 84 ~~v~ig~~~~~ 94 (101)
T cd05635 84 SWCNLGAGTNN 94 (101)
T ss_pred CCCEECCCcee
Confidence 77777777655
No 132
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.10 E-value=1.3e-09 Score=77.10 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=55.0
Q ss_pred eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779 66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN 145 (300)
Q Consensus 66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~ 145 (300)
|++++.|++++.|.+ +.|++++.|++++.|. ++.|++++.|++++.|. ++.+++++.|++++.+.. .+.++++
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~-~svv~~~~~i~~~~~i~~----~~~ig~~ 74 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIV-DSIIGDNAVIGENVRVVN----LCIIGDD 74 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEE-CCEECCCCEECCCCEEcC----CeEECCC
Confidence 456677777777765 7777888887777777 57788888888888877 677888888887777754 2555555
Q ss_pred eEEc
Q 040779 146 NIIG 149 (300)
Q Consensus 146 ~~ig 149 (300)
+.++
T Consensus 75 ~~i~ 78 (79)
T cd03356 75 VVVE 78 (79)
T ss_pred eEEC
Confidence 5543
No 133
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=99.10 E-value=5.6e-10 Score=78.40 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=32.8
Q ss_pred CceEECCCcEECcCcEEccCcEECCCcEEccCCEEC
Q 040779 229 GHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVS 264 (300)
Q Consensus 229 ~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~ 264 (300)
.+++|+++++++.++.+.++++|+++++++++++|+
T Consensus 43 ~~~~ig~~~~v~~~~~i~~~~~ig~~~~i~~~s~v~ 78 (78)
T cd00208 43 NPTIIGDNVEIGANAVIHGGVKIGDNAVIGAGAVVT 78 (78)
T ss_pred CCcEECCCcEECCCCEEeCCCEECCCCEECcCcEeC
Confidence 459999999999999999999999999999999874
No 134
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.09 E-value=2.7e-09 Score=79.09 Aligned_cols=67 Identities=24% Similarity=0.445 Sum_probs=39.6
Q ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 81 NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 81 ~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
.+.|++++.|++++.+.+.+.||+++.|++++.|.+++.||++|.|+. .+.. +.|++++.+.+++.+
T Consensus 11 ~v~ig~~~~I~~~~~i~g~v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~-----svi~~~~~i~~~~~l 77 (101)
T cd05635 11 PIYIGKDAVIEPFAVIEGPVYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVED-----SIIEGYSNKQHDGFL 77 (101)
T ss_pred CEEECCCCEECCCCEEeCCCEECCCCEECCCCEEeCcCEECCCCEECC--EECc-----cEEcCCCEecCcCEE
Confidence 455666666666666666666667777766666666677777777653 2322 444444444444444
No 135
>PLN02694 serine O-acetyltransferase
Probab=99.08 E-value=1.1e-09 Score=94.90 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=50.7
Q ss_pred eecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779 58 YGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCILM 127 (300)
Q Consensus 58 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~ 127 (300)
..|++.++||++++|+. +++|++++.||++|.|..++.+++ +++||++++|++++.|.++++||+++.|+
T Consensus 161 vdI~p~A~IG~gv~Idh~tGVVIGe~a~IGdnv~I~~~VtLGg~g~~~~~r~piIGd~V~IGagA~Ilggi~IGd~a~IG 240 (294)
T PLN02694 161 VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKACGDRHPKIGDGVLIGAGATILGNVKIGEGAKIG 240 (294)
T ss_pred EEeCCcceecCCEEEeCCCCeEECCCcEECCCCEEeecceeCCcccccCCCccEECCCeEECCeeEECCCCEECCCCEEC
Confidence 45777777777777765 566666677777777766666653 34666666666666666666666666666
Q ss_pred cCcEEcc
Q 040779 128 TGAVVGD 134 (300)
Q Consensus 128 ~~~~i~~ 134 (300)
.++++..
T Consensus 241 AgSVV~k 247 (294)
T PLN02694 241 AGSVVLI 247 (294)
T ss_pred CCCEECC
Confidence 6666654
No 136
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.07 E-value=1e-09 Score=102.70 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=47.1
Q ss_pred EECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779 196 VIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263 (300)
Q Consensus 196 ~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv 263 (300)
.||+++.+. ++.|+++++||+++.+....-+.++.++|++++++++. +.|++++.+.++|++
T Consensus 375 ~Ig~~~~i~-~~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 375 GIGENTKIR-NAIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSGI-----VVILKNAVIPDGTVI 436 (436)
T ss_pred EECCCCEEc-ceEecCCCEECCCcEEecccccCCccccccccEEeCCE-----EEEcCCcEeCCCCCC
Confidence 566666665 67788888888888888888888888888888888874 456667777776653
No 137
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.07 E-value=3.5e-10 Score=86.53 Aligned_cols=37 Identities=30% Similarity=0.431 Sum_probs=17.5
Q ss_pred CcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 117 ~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
+++|+++|.+++.+++.++ .|.++||+++.|.++++|
T Consensus 26 dvti~~gcVvHP~a~~iA~-aGPI~iGEnniiEEyA~i 62 (190)
T KOG4042|consen 26 DVTIKEGCVVHPFAVFIAT-AGPIYIGENNIIEEYAVI 62 (190)
T ss_pred ceEecCCcEecceEEEEcc-cCCEEEccCchhhhHHHH
Confidence 4444444444444444332 334555555555555555
No 138
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=99.06 E-value=1.4e-09 Score=94.21 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=47.8
Q ss_pred cceecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcE
Q 040779 56 HVYGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCI 125 (300)
Q Consensus 56 ~~~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~ 125 (300)
....|++.++||++++|+. +..|++++.||++|.|..++.|++ ..+||++++|++++.|.++++||+++.
T Consensus 140 ~gidI~~~a~IG~g~~I~h~~givIG~~a~IGdnv~I~~~VtiGg~~~~~~~~~p~IGd~V~IGaga~Ilggv~IG~~a~ 219 (273)
T PRK11132 140 FQVDIHPAAKIGRGIMLDHATGIVIGETAVIENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAK 219 (273)
T ss_pred eeeEecCcceECCCeEEcCCCCeEECCCCEECCCCEEcCCcEEecCcccCCCcCCEECCCcEEcCCCEEcCCCEECCCCE
Confidence 3445666666666666653 355566666666666666666653 245666666666666666666666666
Q ss_pred EccCcEEcc
Q 040779 126 LMTGAVVGD 134 (300)
Q Consensus 126 I~~~~~i~~ 134 (300)
|+.++++..
T Consensus 220 IGAgSvV~~ 228 (273)
T PRK11132 220 IGAGSVVLQ 228 (273)
T ss_pred ECCCCEECc
Confidence 666666654
No 139
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=1.8e-09 Score=76.30 Aligned_cols=64 Identities=27% Similarity=0.414 Sum_probs=41.9
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 84 IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 84 Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
|++++.|++++.|.+ +.|+++++|++++.|. ++.|++++.|++++.+.+ +.+++++.+++++.+
T Consensus 2 ig~~~~I~~~~~i~~-s~ig~~~~Ig~~~~i~-~svi~~~~~i~~~~~i~~-----svv~~~~~i~~~~~i 65 (79)
T cd03356 2 IGESTVIGENAIIKN-SVIGDNVRIGDGVTIT-NSILMDNVTIGANSVIVD-----SIIGDNAVIGENVRV 65 (79)
T ss_pred ccCCcEECCCCEEeC-CEECCCCEECCCCEEe-CCEEeCCCEECCCCEEEC-----CEECCCCEECCCCEE
Confidence 455555555566653 6666666666666666 677778888887777765 566666666665554
No 140
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.3e-09 Score=93.05 Aligned_cols=76 Identities=30% Similarity=0.448 Sum_probs=58.2
Q ss_pred ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeec
Q 040779 64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFG 143 (300)
Q Consensus 64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig 143 (300)
+.|-.+++|||++++++.++||.|+.|++++.|+++++| . +++|-++|.|..++.+.+ ++||
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl------------~-~sIIl~d~ei~enavVl~-----sIig 344 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRL------------R-ESIILDDAEIEENAVVLH-----SIIG 344 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCcee------------e-eeeeccCcEeeccceEEe-----eeec
Confidence 557788899999888888887777777666555543333 3 667778888888888887 8999
Q ss_pred cceEEccccEEeee
Q 040779 144 CNNIIGHHAVVGVK 157 (300)
Q Consensus 144 ~~~~ig~~~~i~~~ 157 (300)
..+.||.++.+...
T Consensus 345 w~s~iGrWaRVe~~ 358 (407)
T KOG1460|consen 345 WKSSIGRWARVEGI 358 (407)
T ss_pred ccccccceeeeccc
Confidence 99999999988544
No 141
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.05 E-value=2.3e-09 Score=75.62 Aligned_cols=77 Identities=16% Similarity=0.303 Sum_probs=52.6
Q ss_pred eCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccc
Q 040779 66 SSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCN 145 (300)
Q Consensus 66 i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~ 145 (300)
|++++.|++++.|. ++.|++++.|++++.|. ++.+++++.|++++.|. ++.|++++.|++++.+.. .+.++++
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~----~~~v~~~ 74 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIH-HSIVADGAVIGKGCTIPP----GSLISFG 74 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEe-CcEEcCCCEECCCCEECC----CCEEeCC
Confidence 45677777777776 57777777777777776 67777777777777776 677777777777666653 2445544
Q ss_pred eEEc
Q 040779 146 NIIG 149 (300)
Q Consensus 146 ~~ig 149 (300)
+.++
T Consensus 75 ~~ig 78 (79)
T cd05787 75 VVIG 78 (79)
T ss_pred cEeC
Confidence 4443
No 142
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.04 E-value=2e-09 Score=76.00 Aligned_cols=64 Identities=23% Similarity=0.407 Sum_probs=37.3
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 84 IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 84 Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
||+++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.+.. +.|++++.+++++.+
T Consensus 2 ig~~~~I~~~~~i~-~s~ig~~~~ig~~~~i~-~s~i~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i 65 (79)
T cd05787 2 IGRGTSIGEGTTIK-NSVIGRNCKIGKNVVID-NSYIWDDVTIEDGCTIHH-----SIVADGAVIGKGCTI 65 (79)
T ss_pred ccCCCEECCCCEEe-ccEECCCCEECCCCEEe-CcEEeCCCEECCCCEEeC-----cEEcCCCEECCCCEE
Confidence 45555555555555 46666666666666665 566666666666666654 455555444444433
No 143
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.04 E-value=2.7e-09 Score=75.68 Aligned_cols=57 Identities=12% Similarity=0.205 Sum_probs=34.0
Q ss_pred CCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 92 PFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 92 ~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
+++.|++++.|+++|.|++++.|. ++.+++++.|++++.+.+ +.+++++.+++++.+
T Consensus 10 ~~~~i~~~~~Ig~~~~Ig~~~~i~-~sii~~~~~i~~~~~i~~-----sii~~~~~v~~~~~~ 66 (80)
T cd05824 10 KTAKIGPNVVIGPNVTIGDGVRLQ-RCVILSNSTVRDHSWVKS-----SIVGWNSTVGRWTRL 66 (80)
T ss_pred CCCEECCCCEECCCCEECCCcEEe-eeEEcCCCEECCCCEEeC-----CEEeCCCEECCCcEE
Confidence 333333334444444444445555 667777777777777766 677777776666655
No 144
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.04 E-value=2.6e-09 Score=75.98 Aligned_cols=64 Identities=20% Similarity=0.418 Sum_probs=44.3
Q ss_pred ECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 84 IGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 84 Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
|++++.|++++.|. ++.|++++.|++++.|. ++.|++++.|++++.+.+ +.+++++.+++++.+
T Consensus 2 ig~~~~I~~~~~i~-~~~Ig~~~~I~~~~~i~-~s~i~~~~~ig~~~~l~~-----svi~~~~~i~~~~~v 65 (81)
T cd04652 2 VGENTQVGEKTSIK-RSVIGANCKIGKRVKIT-NCVIMDNVTIEDGCTLEN-----CIIGNGAVIGEKCKL 65 (81)
T ss_pred ccCCCEECCCCEEe-CcEECCCCEECCCCEEe-CcEEeCCCEECCCCEEec-----cEEeCCCEECCCCEE
Confidence 55666666666665 46677777777777776 577778888888777765 666666666666665
No 145
>PLN02357 serine acetyltransferase
Probab=99.03 E-value=4e-09 Score=93.93 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=60.4
Q ss_pred eecCccceeCCCceECC--CcEEcCCCEECCCCEECCCCEECCC--------cEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779 58 YGDKYETSSSSSSFIHP--TSIVHPNAIIGQGVSVGPFCTIGSA--------AKLGDGCLLYPSSHIFGNTELGDHCILM 127 (300)
Q Consensus 58 ~~i~~~~~i~~~~~I~~--~~~I~~~~~Ig~~~~I~~~~~I~~~--------~~Ig~~~~I~~~~~I~~~~~IG~~~~I~ 127 (300)
..|++.+.||++++|++ +++|++++.||++|.|..++.|++. ++||++++|++++.|.++++||+++.|+
T Consensus 227 vdI~p~a~IG~Gv~Idh~~giVIGe~avIGdnV~I~~gVtIGg~g~~~g~~~piIGd~V~IGagA~IlggV~IGdga~IG 306 (360)
T PLN02357 227 VDIHPGAKIGQGILLDHATGVVIGETAVVGNNVSILHNVTLGGTGKQSGDRHPKIGDGVLIGAGTCILGNITIGEGAKIG 306 (360)
T ss_pred eeeCCCCEECCCeEECCCCceEECCCCEECCCCEEeCCceecCccccCCccCceeCCCeEECCceEEECCeEECCCCEEC
Confidence 46788888888888875 5778888888888888888888653 6778888888887777778888888888
Q ss_pred cCcEEccC
Q 040779 128 TGAVVGDD 135 (300)
Q Consensus 128 ~~~~i~~~ 135 (300)
.++++..+
T Consensus 307 AgSVV~~d 314 (360)
T PLN02357 307 AGSVVLKD 314 (360)
T ss_pred CCCEECcc
Confidence 87777664
No 146
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.03 E-value=2.3e-09 Score=79.99 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=64.3
Q ss_pred ceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEc
Q 040779 70 SFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIG 149 (300)
Q Consensus 70 ~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig 149 (300)
++|++++.|. ++.||++|.|+ ++.|. ++.+++++.|++++.|. ++.|++++.|++++.+.+ +.|++++.++
T Consensus 2 ~~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~-~siI~~~~~Ig~~~~i~~-----siig~~~~Ig 72 (104)
T cd04651 2 PYIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVE-DSVIMPNVGIGRNAVIRR-----AIIDKNVVIP 72 (104)
T ss_pred ceecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEE-EeEEcCCCEECCCCEEEe-----EEECCCCEEC
Confidence 4567777775 67788888887 78886 68888888888888887 888899999999998876 8888888888
Q ss_pred cccEEeee
Q 040779 150 HHAVVGVK 157 (300)
Q Consensus 150 ~~~~i~~~ 157 (300)
+++.+...
T Consensus 73 ~~~~v~~~ 80 (104)
T cd04651 73 DGVVIGGD 80 (104)
T ss_pred CCCEECCC
Confidence 88888543
No 147
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=99.02 E-value=3.7e-09 Score=79.34 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=26.9
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEcc
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGG 259 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~ 259 (300)
.+.||++++++.++.+..+++||+++++++++.+.+. +++++++.+
T Consensus 56 ~v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~~~--~~~~~~~~G 101 (107)
T cd05825 56 PIVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVVRD--LPAWTVYAG 101 (107)
T ss_pred CEEECCCCEECCCCEECCCCEECCCCEECCCCEEeCc--CCCCCEEEC
Confidence 4444555555555555566666666666667666653 556655544
No 148
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.98 E-value=7.1e-09 Score=76.93 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=22.0
Q ss_pred CcEECCCcEEccCcEEccCCCCceeeccceEEccccEEe
Q 040779 117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVG 155 (300)
Q Consensus 117 ~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~ 155 (300)
.+.||+++.|+.++.+.. .++|++++.+++++.+.
T Consensus 54 ~~~Ig~~~~Ig~~~~i~~----~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 54 HPTIGDNVVIGAGAKILG----NITIGDNVKIGANAVVT 88 (101)
T ss_pred CCEECCCcEEcCCCEEEC----cCEECCCCEECCCCEEC
Confidence 556666666666666654 35666666666666664
No 149
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=5.5e-09 Score=95.03 Aligned_cols=59 Identities=20% Similarity=0.321 Sum_probs=46.7
Q ss_pred ECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 90 VGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 90 I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
++. +.|.+.+.|++++.|++++.|++++.||++|.|++++.|.+ ++|.+++.+++++.+
T Consensus 253 ~~~-~~i~gp~~ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~-----Sii~~~~~i~~~~~i 311 (358)
T COG1208 253 IRS-AYIIGPVVIGPGAKIGPGALIGPYTVIGEGVTIGNGVEIKN-----SIIMDNVVIGHGSYI 311 (358)
T ss_pred ccc-ceEeCCEEECCCCEECCCCEECCCcEECCCCEECCCcEEEe-----eEEEcCCEECCCCEE
Confidence 444 66666777777777777777777888888888888888887 888888888888887
No 150
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.96 E-value=8.2e-09 Score=77.48 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=16.7
Q ss_pred CceecCceEECCCcEECcCcEEccCcEECCCcEEc
Q 040779 224 NTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIG 258 (300)
Q Consensus 224 ~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~ 258 (300)
++.+..+++|+++++++.++.+.+ .++++++++
T Consensus 70 ~~~i~~~~~ig~~~~i~~~~~v~~--~i~~~~i~~ 102 (109)
T cd04647 70 NVVILPGVTIGDGAVVGAGSVVTK--DVPPNSIVA 102 (109)
T ss_pred CCEEcCCCEECCCCEECCCCEEee--ECCCCCEEE
Confidence 333334455555555555555552 455555543
No 151
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.90 E-value=8.6e-09 Score=94.85 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=70.1
Q ss_pred CCcceecCccceeCCCceECCCcEEcC---CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCc
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHP---NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGA 130 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~---~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~ 130 (300)
+..++.|++.+.+ .++.|+++|.|.. ++.|+++|.|+++|.|. ++.|++++.|++++.|. +++|++++.|++++
T Consensus 279 ~~~~~~i~~~~~i-~~~~Ig~~~~I~~~v~~s~ig~~~~I~~~~~i~-~svi~~~~~i~~~~~i~-~~ii~~~~~i~~~~ 355 (380)
T PRK05293 279 NLPPQYIAENAKV-KNSLVVEGCVVYGTVEHSVLFQGVQVGEGSVVK-DSVIMPGAKIGENVVIE-RAIIGENAVIGDGV 355 (380)
T ss_pred CCCCCEECCCCEE-ecCEECCCCEEcceecceEEcCCCEECCCCEEE-CCEEeCCCEECCCeEEe-EEEECCCCEECCCC
Confidence 4556677777777 4667777777753 46788888888888886 67888888888888887 68888888888888
Q ss_pred EEccCCCCceeeccceEEccccEE
Q 040779 131 VVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 131 ~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
.+.+......+||+++.+.+.+.|
T Consensus 356 ~i~~~~~~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 356 IIGGGKEVITVIGENEVIGVGTVI 379 (380)
T ss_pred EEcCCCceeEEEeCCCCCCCCcEe
Confidence 887633223556666666665544
No 152
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=98.87 E-value=1.9e-08 Score=75.02 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=35.1
Q ss_pred EECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 89 SVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 89 ~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
+|++++.|. ++.||++|.|+ ++.|. ++.+++++.|++++.|.. +.|++++.++.++.+
T Consensus 3 ~i~~~~~i~-~s~Ig~~~~I~-~~~I~-~svi~~~~~Ig~~~~I~~-----siI~~~~~Ig~~~~i 60 (104)
T cd04651 3 YIGRRGEVK-NSLVSEGCIIS-GGTVE-NSVLFRGVRVGSGSVVED-----SVIMPNVGIGRNAVI 60 (104)
T ss_pred eecCCCEEE-eEEECCCCEEc-CeEEE-eCEEeCCCEECCCCEEEE-----eEEcCCCEECCCCEE
Confidence 444555553 45566666665 56665 666777777777777665 566666666655555
No 153
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.87 E-value=2.1e-08 Score=91.39 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEc
Q 040779 73 HPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILM 127 (300)
Q Consensus 73 ~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~ 127 (300)
.+.+.+.+.+.|++++.| +++.|.+++.||++|.|+ ++.|.++++||++|.|+
T Consensus 246 ~~~~~i~~~~~i~~~~~i-~~~~i~~~~~Ig~~~~I~-~~~i~~~~~Ig~~~~i~ 298 (353)
T TIGR01208 246 DDESKIRGRVVVGEGAKI-VNSVIRGPAVIGEDCIIE-NSYIGPYTSIGEGVVIR 298 (353)
T ss_pred CCCCEEcCCEEECCCCEE-eCCEEECCcEECCCCEEc-CcEECCCCEECCCCEEe
Confidence 344444444555555555 444444445555555543 23333344444444443
No 154
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.83 E-value=2.1e-08 Score=93.16 Aligned_cols=70 Identities=19% Similarity=0.288 Sum_probs=60.2
Q ss_pred cCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEee
Q 040779 79 HPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGV 156 (300)
Q Consensus 79 ~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~ 156 (300)
.+++.|+++|.|+ ++.|. ++.|+++|.|++++.|. +++|+++|.|++++.|.+ ++|++++.|++++.++.
T Consensus 313 ~~~~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~~-----~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 313 AQDSLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVRR-----AILDKNVVVPPGATIGV 382 (407)
T ss_pred EEeCEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEEe-----eEECCCCEECCCCEECC
Confidence 3467788888887 78887 58899999999999998 788999999999999987 99999999999998864
No 155
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=98.82 E-value=9.8e-09 Score=78.70 Aligned_cols=137 Identities=18% Similarity=0.251 Sum_probs=82.8
Q ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCcEEe---CCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeeee
Q 040779 82 AIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF---GNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVKC 158 (300)
Q Consensus 82 ~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~---~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~~ 158 (300)
+.|...+.+.-.+.|.++++|+++|++++.+++. +.+.||+++.|.+.++|.+.++ ++.+.
T Consensus 9 vkIap~AvVCvEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~------------~~~~~---- 72 (190)
T KOG4042|consen 9 VKIAPSAVVCVESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLE------------PGAVW---- 72 (190)
T ss_pred eeecCceEEEEecccccceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcC------------CCCcc----
Confidence 4555666666667777788888888888887764 4889999999999999987332 22222
Q ss_pred cCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCccEEccCceecCceEECCCcE
Q 040779 159 QDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYNIFANNTLLAGHVVVEDYTH 238 (300)
Q Consensus 159 ~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ 238 (300)
..++.++.||.+..+.-+|.. ...++||+..|.+.+.+++++.+.++| .
T Consensus 73 ------d~~~~pmiIGt~NvFeVgc~s-------~A~kvGd~NVieskayvg~gv~vssgC------------------~ 121 (190)
T KOG4042|consen 73 ------DSDGQPMIIGTWNVFEVGCKS-------SAKKVGDRNVIESKAYVGDGVSVSSGC------------------S 121 (190)
T ss_pred ------CCCCCeEEEeccceEEeechh-------hhhhhcCcceEeeeeEecCCcEEcCCc------------------e
Confidence 112234666666665544443 234556665555555555544444444 4
Q ss_pred ECcCcEEccCcEECCCcEEccCCEECC
Q 040779 239 TAGAIVIHQFCHIGSHSFIGGGSVVSQ 265 (300)
Q Consensus 239 ig~~~~v~~~~~I~~~~vv~~~svv~~ 265 (300)
+|+.+.+...-.++++++|.+-.-+..
T Consensus 122 vGA~c~v~~~q~lpent~vYga~~L~R 148 (190)
T KOG4042|consen 122 VGAKCTVFSHQNLPENTSVYGATNLSR 148 (190)
T ss_pred eccceEEecccccCCcceEEccccccc
Confidence 444444444456677777766555544
No 156
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.74 E-value=5.7e-08 Score=88.77 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=74.5
Q ss_pred hhhhhhccchhhHHHHHHHHHhhcc-cCCcceec-CccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCC
Q 040779 28 SFLLLKVRRPCLSSLSTLFLRRLST-ALPHVYGD-KYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDG 105 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i-~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~ 105 (300)
.|..+..+..++.....++.+.... .......+ ..+..+.+.++|++.+.+. ++.||++|.|+++ .+. ++.|+++
T Consensus 240 ~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~ig~~~~I~~~-~v~-~s~i~~~ 316 (361)
T TIGR02091 240 YWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVV-DSLVSEGCIISGA-TVS-HSVLGIR 316 (361)
T ss_pred EEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEE-CCEECCCCEECCC-EEE-ccEECCC
Confidence 4777777777666554333221110 01111111 1122344556666666553 5667777777664 554 6888888
Q ss_pred CEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 106 CLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 106 ~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
|.|+++|.|. ++.|++++.|++++.+.+ +++|+++.|++++.+
T Consensus 317 ~~I~~~~~i~-~sii~~~~~v~~~~~l~~-----~ivg~~~~i~~~~~i 359 (361)
T TIGR02091 317 VRIGSGSTVE-DSVIMGDVGIGRGAVIRN-----AIIDKNVRIGEGVVI 359 (361)
T ss_pred CEECCCCEEe-eeEEeCCCEECCCCEEee-----eEECCCCEECCCCEe
Confidence 8888888887 788888888888888875 888888888887766
No 157
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.73 E-value=2e-08 Score=87.06 Aligned_cols=105 Identities=18% Similarity=0.262 Sum_probs=56.8
Q ss_pred hhhhhccchhhHHHHHHHHHhhcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEE
Q 040779 29 FLLLKVRRPCLSSLSTLFLRRLSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLL 108 (300)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I 108 (300)
|++...|+.++..+. ++++.. +...++..-|.+.+..++.+++.+.++ ++|.|++++.|+.+++|++++.|
T Consensus 227 WmDIGqpkdf~~g~~-~Yl~s~--~~~t~~r~~p~~~i~~nvlvd~~~~iG------~~C~Ig~~vvIG~r~~i~~gV~l 297 (371)
T KOG1322|consen 227 WMDIGQPKDFLTGFS-FYLRSL--PKYTSPRLLPGSKIVGNVLVDSIASIG------ENCSIGPNVVIGPRVRIEDGVRL 297 (371)
T ss_pred hhhcCCHHHHHHHHH-HHHhhC--cccCCccccCCccccccEeeccccccC------CccEECCCceECCCcEecCceEE
Confidence 899999999988743 333322 333333333334444555555554444 44444444433333333333333
Q ss_pred CCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 109 YPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 109 ~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
. ++.|..+..++..+.+.. +..|.++.||.++.+
T Consensus 298 ------~-~s~il~~~~~~~~s~i~s-----~ivg~~~~IG~~~~i 331 (371)
T KOG1322|consen 298 ------Q-DSTILGADYYETHSEISS-----SIVGWNVPIGIWARI 331 (371)
T ss_pred ------E-eeEEEccceechhHHHHh-----hhccccccccCceEE
Confidence 3 445555566666666655 677777777777655
No 158
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=98.73 E-value=1.3e-07 Score=74.90 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=33.5
Q ss_pred cCcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 211 HDCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 211 ~~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
.++.||++++++.++.+..+++||++++||++++|.++ +++++++++.
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~~--v~~~~v~~G~ 119 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTKD--VPPYAIVGGN 119 (145)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEccc--cCCCeEEEec
Confidence 35555566666666666667778888888888888874 6788777654
No 159
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=4.9e-08 Score=83.55 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=69.4
Q ss_pred eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779 58 YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD 134 (300)
Q Consensus 58 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~ 134 (300)
+.|-.++.|.+.+.++|+|+|+||++||.+++||+++.|. ++.|-+++.|.+++.+- +++||-++.||..+.+..
T Consensus 283 a~IigdVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~-~sIIl~d~ei~enavVl-~sIigw~s~iGrWaRVe~ 357 (407)
T KOG1460|consen 283 AEIIGDVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLR-ESIILDDAEIEENAVVL-HSIIGWKSSIGRWARVEG 357 (407)
T ss_pred ceEEeeeEEcCcceeCCccccCCCceecCCceecCCceee-eeeeccCcEeeccceEE-eeeecccccccceeeecc
Confidence 5677888899999999999999999999999999999999 79999999999999998 899999999999998865
No 160
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.72 E-value=6.6e-08 Score=90.34 Aligned_cols=15 Identities=0% Similarity=-0.170 Sum_probs=8.9
Q ss_pred hhhhhccchhhHHHH
Q 040779 29 FLLLKVRRPCLSSLS 43 (300)
Q Consensus 29 ~~~~~~~~~~~~~~~ 43 (300)
|..+..++.++....
T Consensus 256 w~digt~~~y~~an~ 270 (429)
T PRK02862 256 WEDIGTIEAFYEANL 270 (429)
T ss_pred EEeCCCHHHHHHHHH
Confidence 566666666665543
No 161
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=98.71 E-value=1.6e-07 Score=77.84 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=36.4
Q ss_pred CcEeCCccEEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC-CEECC
Q 040779 212 DCKIGNYNIFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG-SVVSQ 265 (300)
Q Consensus 212 ~v~Ig~~~~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~-svv~~ 265 (300)
.+.||++++|+.++++..+++||+++++|+++++.+ .+++++++++. +.+.+
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk--dvp~~~iv~G~Pa~vir 176 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK--DVPPYGIVAGNPARVIR 176 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC--ccCCCeEEeCCcceEEE
Confidence 455555555566666666777888888888888887 58888888774 54543
No 162
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.64 E-value=1.1e-07 Score=87.10 Aligned_cols=117 Identities=10% Similarity=0.114 Sum_probs=67.0
Q ss_pred hhhhhhccchhhHHHHHHHHHhhccc-C-CcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCC
Q 040779 28 SFLLLKVRRPCLSSLSTLFLRRLSTA-L-PHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDG 105 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~ 105 (300)
.|+.+..|..+......++....... . .....+.....+.+.++|++++.| +++.||++|.|+ ..|. ++.|+++
T Consensus 235 ~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i-~~~~Ig~~~~i~--~~v~-~s~i~~~ 310 (369)
T TIGR02092 235 YLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKV-ENSLVANGCIIE--GKVE-NSILSRG 310 (369)
T ss_pred ceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEE-EEeEEcCCCEEe--eEEe-CCEECCC
Confidence 36777777777665543332211110 0 001011111122355566666666 356666666664 2344 5677777
Q ss_pred CEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 106 CLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 106 ~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
|.|+++|.|. ++.|++++.|++++.+.+ ++|++++.+++++.+
T Consensus 311 ~~I~~~~~i~-~sii~~~~~I~~~~~i~~-----~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 311 VHVGKDALIK-NCIIMQRTVIGEGAHLEN-----VIIDKDVVIEPNVKI 353 (369)
T ss_pred CEECCCCEEE-eeEEeCCCEECCCCEEEE-----EEECCCCEECCCCEe
Confidence 7777777776 777777777777777766 777777777777666
No 163
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.62 E-value=9.3e-07 Score=73.01 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=55.8
Q ss_pred cceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779 63 ETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD 134 (300)
Q Consensus 63 ~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~ 134 (300)
.++...++.|++++++. .-.+++....++++.|.+ ..+..+++|+.+|.+.+|+..+.++.|+..+.|..
T Consensus 16 ~ivv~gdViIG~nS~l~-~~V~g~~iivge~v~i~G-diva~diridmw~kv~gNV~ve~dayiGE~~sI~g 85 (277)
T COG4801 16 IIVVKGDVIIGKNSMLK-YGVVGEEIIVGERVRIYG-DIVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKG 85 (277)
T ss_pred eEEEeccEEEcccceee-eeeeeeeEEeccCcEEee-eEEecceeeeeeeEeeccEEEcCceEEeccceeee
Confidence 34566888889998887 447888888889998885 44558889999998888888888888888888765
No 164
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.62 E-value=2.4e-07 Score=86.48 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=59.5
Q ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEEeee
Q 040779 81 NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVVGVK 157 (300)
Q Consensus 81 ~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i~~~ 157 (300)
++.|+++|.| +++.|. ++.|+++|.|++++.|. ++.|+++|.|++++.|.+ ++|++++.+++++.++..
T Consensus 327 ~s~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~~-----~ii~~~~~i~~~~~i~~~ 395 (425)
T PRK00725 327 NSLVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLRR-----CVIDRGCVIPEGMVIGED 395 (425)
T ss_pred eCEEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEee-----EEECCCCEECCCCEECCC
Confidence 6788888888 688887 68899999999999997 888999999999999976 899999999988888543
No 165
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.60 E-value=3.1e-07 Score=86.08 Aligned_cols=16 Identities=0% Similarity=-0.149 Sum_probs=10.5
Q ss_pred hhhhhhccchhhHHHH
Q 040779 28 SFLLLKVRRPCLSSLS 43 (300)
Q Consensus 28 ~~~~~~~~~~~~~~~~ 43 (300)
.|..+..|+.++....
T Consensus 263 yw~dIg~~~~y~~a~~ 278 (436)
T PLN02241 263 YWEDIGTIKSFYEANL 278 (436)
T ss_pred EEEECCCHHHHHHHHH
Confidence 4677777777666554
No 166
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.50 E-value=6.5e-07 Score=83.68 Aligned_cols=33 Identities=21% Similarity=0.557 Sum_probs=17.4
Q ss_pred cEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779 100 AKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD 134 (300)
Q Consensus 100 ~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~ 134 (300)
+.||++|.| +++.|. ++.||++|.|++++.|.+
T Consensus 309 ~~ig~~~~i-~~~~i~-~svi~~~~~Ig~~~~i~~ 341 (429)
T PRK02862 309 SIIAEGCII-KNCSIH-HSVLGIRSRIESGCTIED 341 (429)
T ss_pred CEECCCCEE-CCcEEE-EEEEeCCcEECCCCEEEe
Confidence 444455544 444454 455556666655555544
No 167
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=8.1e-07 Score=79.69 Aligned_cols=89 Identities=20% Similarity=0.196 Sum_probs=73.3
Q ss_pred ecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCC
Q 040779 59 GDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPG 138 (300)
Q Consensus 59 ~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~ 138 (300)
-|.+..+..+.+++..++.+. ++.|+++|+|.. .|. ++.|+.+++|+.+|.|. ++.|..+|.|+.+|.|..
T Consensus 275 ~IyT~~~~~pPak~~~~s~v~-nSLv~~GciI~G--~V~-nSVL~~~v~I~~gs~i~-~svim~~~~IG~~~~l~~---- 345 (393)
T COG0448 275 PIYTKNKNLPPAKFVNDSEVS-NSLVAGGCIISG--TVE-NSVLFRGVRIGKGSVIE-NSVIMPDVEIGEGAVLRR---- 345 (393)
T ss_pred ceeecCCCCCCceEecCceEe-eeeeeCCeEEEe--EEE-eeEEecCeEECCCCEEE-eeEEeCCcEECCCCEEEE----
Confidence 355555566677777777765 778888998865 666 78999999999999998 899999999999999997
Q ss_pred ceeeccceEEccccEEeee
Q 040779 139 QTVFGCNNIIGHHAVVGVK 157 (300)
Q Consensus 139 ~~~Ig~~~~ig~~~~i~~~ 157 (300)
++|.++|.|++++.|+..
T Consensus 346 -aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 346 -AIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred -EEeCCCcEeCCCcEEcCC
Confidence 999999999999999654
No 168
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.49 E-value=3.6e-07 Score=69.65 Aligned_cols=95 Identities=16% Similarity=0.193 Sum_probs=46.7
Q ss_pred eeeccceEEccccEEeeeecCcccccCCcceeeeCcccEECCCeEEecCCccCCceEECCCCEEccccEECcCcEeCCcc
Q 040779 140 TVFGCNNIIGHHAVVGVKCQDMKYKSGDECFVDVGNNNEFREHVSIHRSSKSGDRTVIGDNNLIMGSCHIAHDCKIGNYN 219 (300)
Q Consensus 140 ~~Ig~~~~ig~~~~i~~~~~~~~~~~~~~~~~~IG~~~~i~~~~~i~~~~~~~~~~~IG~~~~i~~~~~i~~~v~Ig~~~ 219 (300)
.++|..|.++.++.|+++...|+ +.....++.||+++++++.+++++ ++|+.-+++|.++
T Consensus 55 Vr~GryCV~ksrsvIRPp~K~FS-Kg~affp~hiGdhVFieE~cVVnA-------------------AqIgsyVh~Gkna 114 (184)
T KOG3121|consen 55 VRIGRYCVLKSRSVIRPPMKIFS-KGPAFFPVHIGDHVFIEEECVVNA-------------------AQIGSYVHLGKNA 114 (184)
T ss_pred ceEcceEEeccccccCCchHHhc-CCceeeeeeecceEEEecceEeeh-------------------hhheeeeEeccce
Confidence 44444444444444443332222 233344577777777777777743 2333344444444
Q ss_pred EEccCceecCceEECCCcEECcCcEEccCcEECCCcEEccC
Q 040779 220 IFANNTLLAGHVVVEDYTHTAGAIVIHQFCHIGSHSFIGGG 260 (300)
Q Consensus 220 ~i~~~~~v~~~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~ 260 (300)
+|+.++++++.++|-|+++ +.+.+.+++++.++++
T Consensus 115 viGrrCVlkdCc~ild~tV------lPpet~vppy~~~~g~ 149 (184)
T KOG3121|consen 115 VIGRRCVLKDCCRILDDTV------LPPETLVPPYSTIGGN 149 (184)
T ss_pred eEcCceEhhhheeccCCcc------cCcccccCCceEEcCC
Confidence 4444444444444444443 4444455555555554
No 169
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=4.7e-07 Score=80.24 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=21.7
Q ss_pred CcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 99 AAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 99 ~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
++.+++++.|++++.|. .++||++|.|++.+.+.+ +.|.+++++|+++.|
T Consensus 334 d~iv~~~t~i~~~s~ik-~SviG~nC~Ig~~~~v~n-----Silm~nV~vg~G~~I 383 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIK-RSVIGSNCDIGERVKVAN-----SILMDNVVVGDGVNI 383 (433)
T ss_pred hhccCCCceecccceee-eeeecCCccccCCcEEEe-----eEeecCcEecCCcce
Confidence 33333333333333333 444444444444444443 444444444444444
No 170
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=5.1e-07 Score=80.00 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=17.6
Q ss_pred CcEECCCcEEccCcEEccCCCCceeeccceEEccccEE
Q 040779 117 NTELGDHCILMTGAVVGDDLPGQTVFGCNNIIGHHAVV 154 (300)
Q Consensus 117 ~~~IG~~~~I~~~~~i~~~~~~~~~Ig~~~~ig~~~~i 154 (300)
.+.++++|.|++++.|.. ++||.+|.||+.+.+
T Consensus 334 d~iv~~~t~i~~~s~ik~-----SviG~nC~Ig~~~~v 366 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKR-----SVIGSNCDIGERVKV 366 (433)
T ss_pred hhccCCCceecccceeee-----eeecCCccccCCcEE
Confidence 444555555555555544 555555555555554
No 171
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.41 E-value=7.5e-07 Score=73.25 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=48.5
Q ss_pred ecCccceeCCCceECCC--cEEcCCCEECCCCEECCCCEECC--------CcEECCCCEECCCcEEeCCcEECCCcEEcc
Q 040779 59 GDKYETSSSSSSFIHPT--SIVHPNAIIGQGVSVGPFCTIGS--------AAKLGDGCLLYPSSHIFGNTELGDHCILMT 128 (300)
Q Consensus 59 ~i~~~~~i~~~~~I~~~--~~I~~~~~Ig~~~~I~~~~~I~~--------~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~ 128 (300)
.|||-++||++..++.. ..|++.+.||+++.|..++.+++ .-.||+|+.|+.++.|-+++.||+++.|+.
T Consensus 150 dihpaa~ig~gilldhatgvvigeTAvvg~~vSilH~Vtlggtgk~~gdrhP~Igd~vliGaGvtILgnV~IGegavIaA 229 (269)
T KOG4750|consen 150 DIHPAAKIGKGILLDHATGVVIGETAVVGDNVSILHPVTLGGTGKGSGDRHPKIGDNVLIGAGVTILGNVTIGEGAVIAA 229 (269)
T ss_pred cccchhhcccceeeccccceeecceeEeccceeeecceeeccccccccccCCcccCCeEEccccEEeCCeeECCCcEEec
Confidence 45566666666666433 45555666666666665555542 124777777777777777777777777777
Q ss_pred CcEEccC
Q 040779 129 GAVVGDD 135 (300)
Q Consensus 129 ~~~i~~~ 135 (300)
++++..|
T Consensus 230 GsvV~kD 236 (269)
T KOG4750|consen 230 GSVVLKD 236 (269)
T ss_pred cceEEec
Confidence 7777654
No 172
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.41 E-value=1.5e-06 Score=79.47 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=48.6
Q ss_pred CCcceecCccceeCCCceECCCcEEcC----CCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccC
Q 040779 54 LPHVYGDKYETSSSSSSFIHPTSIVHP----NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129 (300)
Q Consensus 54 ~~~~~~i~~~~~i~~~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~ 129 (300)
+++.+++++.+++ +++.|+++|.|++ ++.|+++|.|+++|+|. ++.|++++.|++++.|. +++||+++.|+++
T Consensus 280 ~~~~~~i~~~~~i-~~~~ig~~~~I~~~~v~~s~i~~~~~I~~~~~i~-~sii~~~~~v~~~~~l~-~~ivg~~~~i~~~ 356 (361)
T TIGR02091 280 LPPAKFVDSDAQV-VDSLVSEGCIISGATVSHSVLGIRVRIGSGSTVE-DSVIMGDVGIGRGAVIR-NAIIDKNVRIGEG 356 (361)
T ss_pred CCCceEecCCCEE-ECCEECCCCEECCCEEEccEECCCCEECCCCEEe-eeEEeCCCEECCCCEEe-eeEECCCCEECCC
Confidence 3455566665543 4455666666665 66666666666666665 56667777777776665 6666666666666
Q ss_pred cEEc
Q 040779 130 AVVG 133 (300)
Q Consensus 130 ~~i~ 133 (300)
+.|.
T Consensus 357 ~~i~ 360 (361)
T TIGR02091 357 VVIG 360 (361)
T ss_pred CEeC
Confidence 6553
No 173
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.38 E-value=1.5e-06 Score=80.73 Aligned_cols=67 Identities=21% Similarity=0.276 Sum_probs=50.3
Q ss_pred ceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779 64 TSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD 134 (300)
Q Consensus 64 ~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~ 134 (300)
+.|++++.|+ ++.|. ++.|+++|.|++++.|. ++.|++++.|++++.|. +++|++++.|++++.+..
T Consensus 316 ~~ig~~~~I~-~~~i~-~svIg~~~~I~~~~~i~-~sii~~~~~i~~~~~i~-~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 316 SLVSAGSIIS-GATVR-NSVLSPNVVVESGAEVE-DSVLMDGVRIGRGAVVR-RAILDKNVVVPPGATIGV 382 (407)
T ss_pred CEEcCCCEEC-CeeeE-cCEECCCCEECCCCEEe-eeEECCCCEECCCCEEE-eeEECCCCEECCCCEECC
Confidence 4455555555 55554 47788888888888887 67788888888888887 788888888888887765
No 174
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=98.30 E-value=9.5e-07 Score=51.39 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=23.5
Q ss_pred ceEECCCcEECcCcEEccCcEECCCcEEccCCEECC
Q 040779 230 HVVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVVSQ 265 (300)
Q Consensus 230 ~v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv~~ 265 (300)
++.||++|+|+.++.+ +++|+|+++++++++|++
T Consensus 1 pv~IG~~~~ig~~~~i--gi~igd~~~i~~g~~I~~ 34 (34)
T PF14602_consen 1 PVTIGDNCFIGANSTI--GITIGDGVIIGAGVVITA 34 (34)
T ss_dssp TEEE-TTEEE-TT-EE--TSEE-TTEEE-TTEEEES
T ss_pred CeEECCCEEECccccc--CCEEcCCCEECCCCEEcC
Confidence 4678888888888887 588899999988888764
No 175
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.28 E-value=2e-06 Score=77.22 Aligned_cols=78 Identities=15% Similarity=0.202 Sum_probs=61.5
Q ss_pred CcceecCccceeCCCceECCCcEEc---CCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcE
Q 040779 55 PHVYGDKYETSSSSSSFIHPTSIVH---PNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAV 131 (300)
Q Consensus 55 ~~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~ 131 (300)
.+++.+..++++ .++.|..+|.|. .++.|+.+++|+.++.|. ++.|-.++.|+++|.|. +++|.++|.|+++..
T Consensus 283 ~pPak~~~~s~v-~nSLv~~GciI~G~V~nSVL~~~v~I~~gs~i~-~svim~~~~IG~~~~l~-~aIIDk~v~I~~g~~ 359 (393)
T COG0448 283 LPPAKFVNDSEV-SNSLVAGGCIISGTVENSVLFRGVRIGKGSVIE-NSVIMPDVEIGEGAVLR-RAIIDKNVVIGEGVV 359 (393)
T ss_pred CCCceEecCceE-eeeeeeCCeEEEeEEEeeEEecCeEECCCCEEE-eeEEeCCcEECCCCEEE-EEEeCCCcEeCCCcE
Confidence 444554444432 566677777776 356799999999999998 78888899999999999 999999999999999
Q ss_pred EccC
Q 040779 132 VGDD 135 (300)
Q Consensus 132 i~~~ 135 (300)
|..+
T Consensus 360 i~~~ 363 (393)
T COG0448 360 IGGD 363 (393)
T ss_pred EcCC
Confidence 9874
No 176
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.18 E-value=6.4e-06 Score=75.52 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=44.7
Q ss_pred cceecCccceeCCCceECCCcEEc---CCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEE
Q 040779 56 HVYGDKYETSSSSSSFIHPTSIVH---PNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVV 132 (300)
Q Consensus 56 ~~~~i~~~~~i~~~~~I~~~~~I~---~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i 132 (300)
+++.|++.+.+ +++.|+++|.|+ .++.|+++|.|+++|.|. ++.+++++.|++++.+. ++.||+++.|++++.+
T Consensus 277 ~p~~i~~~~~i-~~~~Ig~~~~i~~~v~~s~i~~~~~I~~~~~i~-~sii~~~~~I~~~~~i~-~~ii~~~~~v~~~~~~ 353 (369)
T TIGR02092 277 PPTYYAENSKV-ENSLVANGCIIEGKVENSILSRGVHVGKDALIK-NCIIMQRTVIGEGAHLE-NVIIDKDVVIEPNVKI 353 (369)
T ss_pred CCcEEcCCCEE-EEeEEcCCCEEeeEEeCCEECCCCEECCCCEEE-eeEEeCCCEECCCCEEE-EEEECCCCEECCCCEe
Confidence 44555555555 455555665554 234566666666666664 56666666666666665 5666666666666666
Q ss_pred cc
Q 040779 133 GD 134 (300)
Q Consensus 133 ~~ 134 (300)
.+
T Consensus 354 ~~ 355 (369)
T TIGR02092 354 AG 355 (369)
T ss_pred CC
Confidence 44
No 177
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.09 E-value=4.7e-06 Score=72.67 Aligned_cols=97 Identities=18% Similarity=0.099 Sum_probs=60.6
Q ss_pred hcccCCcceecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccC
Q 040779 50 LSTALPHVYGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTG 129 (300)
Q Consensus 50 ~~~~~~~~~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~ 129 (300)
-++++.+++.+...+.+.+-..++.+|.|++++.||.++.|+.++.|. ++++-.+..+..++.|. .+.+|-++.||.+
T Consensus 251 t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~~vvIG~r~~i~~gV~l~-~s~il~~~~~~~~s~i~-s~ivg~~~~IG~~ 328 (371)
T KOG1322|consen 251 TSPRLLPGSKIVGNVLVDSIASIGENCSIGPNVVIGPRVRIEDGVRLQ-DSTILGADYYETHSEIS-SSIVGWNVPIGIW 328 (371)
T ss_pred CCccccCCccccccEeeccccccCCccEECCCceECCCcEecCceEEE-eeEEEccceechhHHHH-hhhccccccccCc
Confidence 344455555666666666666666777777777777777777777777 45555566677666665 5566666666666
Q ss_pred cEEccCCCCceeeccceEEcccc
Q 040779 130 AVVGDDLPGQTVFGCNNIIGHHA 152 (300)
Q Consensus 130 ~~i~~~~~~~~~Ig~~~~ig~~~ 152 (300)
+.|.. .++||+|+.|...-
T Consensus 329 ~~id~----~a~lG~nV~V~d~~ 347 (371)
T KOG1322|consen 329 ARIDK----NAVLGKNVIVADED 347 (371)
T ss_pred eEEec----ccEeccceEEeccc
Confidence 65543 24555555544433
No 178
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.02 E-value=2.1e-05 Score=73.57 Aligned_cols=65 Identities=18% Similarity=0.302 Sum_probs=38.5
Q ss_pred eeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEc
Q 040779 65 SSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVG 133 (300)
Q Consensus 65 ~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~ 133 (300)
.|++++.| +++.|. ++.|+++|.|+++|.|. ++.|++++.|++++.|. ++.|+++|.|++++.|.
T Consensus 329 ~i~~~~~i-~~~~i~-~svi~~~~~I~~~~~i~-~svi~~~~~I~~~~~i~-~~ii~~~~~i~~~~~i~ 393 (425)
T PRK00725 329 LVSGGCII-SGAVVR-RSVLFSRVRVNSFSNVE-DSVLLPDVNVGRSCRLR-RCVIDRGCVIPEGMVIG 393 (425)
T ss_pred EEcCCcEE-cCcccc-CCEECCCCEECCCCEEe-eeEEcCCCEECCCCEEe-eEEECCCCEECCCCEEC
Confidence 34444444 344444 45566666666666664 56666666777666665 56666666666665554
No 179
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=98.01 E-value=0.00037 Score=57.95 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=58.0
Q ss_pred eecCccceeCCCceECCCcEEcCCCEECCCCEECCCCEECCCcEECCCCEECCCcEEeCCcEECCCcEEccCcEEccCCC
Q 040779 58 YGDKYETSSSSSSFIHPTSIVHPNAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGDDLP 137 (300)
Q Consensus 58 ~~i~~~~~i~~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~~~~ 137 (300)
......+.||.++.+..+ .+++.+..|+++.|... .+..++.|+..|.+..++....+..||++++|....++.++
T Consensus 17 ivv~gdViIG~nS~l~~~-V~g~~iivge~v~i~Gd-iva~diridmw~kv~gNV~ve~dayiGE~~sI~gkl~v~gd-- 92 (277)
T COG4801 17 IVVKGDVIIGKNSMLKYG-VVGEEIIVGERVRIYGD-IVAKDIRIDMWCKVTGNVIVENDAYIGEFSSIKGKLTVIGD-- 92 (277)
T ss_pred EEEeccEEEcccceeeee-eeeeeEEeccCcEEeee-EEecceeeeeeeEeeccEEEcCceEEeccceeeeeEEEecc--
Confidence 455667777777777665 44556777777777543 33357777777777777777777777777777777776653
Q ss_pred CceeeccceEEcc
Q 040779 138 GQTVFGCNNIIGH 150 (300)
Q Consensus 138 ~~~~Ig~~~~ig~ 150 (300)
..+|+++.|..
T Consensus 93 --Ldig~dV~Ieg 103 (277)
T COG4801 93 --LDIGADVIIEG 103 (277)
T ss_pred --cccccceEEec
Confidence 55666665544
No 180
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.94 E-value=7.9e-06 Score=48.22 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=17.5
Q ss_pred eEECCCcEECcCcEEccCcEECCCcEEccCCEE
Q 040779 231 VVVEDYTHTAGAIVIHQFCHIGSHSFIGGGSVV 263 (300)
Q Consensus 231 v~Ig~~~~ig~~~~v~~~~~I~~~~vv~~~svv 263 (300)
++||++++|++++.+.+++.|+++++|+++++|
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I 34 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVI 34 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEETTEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEcCCCEE
Confidence 445555555555555555555555555555554
No 181
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=97.90 E-value=1.3e-05 Score=47.31 Aligned_cols=30 Identities=33% Similarity=0.744 Sum_probs=11.5
Q ss_pred ECCCCEECCCcEEeCCcEECCCcEEccCcE
Q 040779 102 LGDGCLLYPSSHIFGNTELGDHCILMTGAV 131 (300)
Q Consensus 102 Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~ 131 (300)
||++++|++++.|.+++.||++|.|++++.
T Consensus 4 Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~ 33 (36)
T PF00132_consen 4 IGDNVIIGPNAVIGGGVVIGDNCVIGPGVV 33 (36)
T ss_dssp EETTEEEETTEEEETTEEE-TTEEEETTEE
T ss_pred EcCCCEECCCcEecCCCEECCCCEEcCCCE
Confidence 333333333333333444444444444433
No 182
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=97.81 E-value=3.6e-05 Score=44.73 Aligned_cols=15 Identities=33% Similarity=0.647 Sum_probs=5.4
Q ss_pred cEECCCcEEccCcEE
Q 040779 118 TELGDHCILMTGAVV 132 (300)
Q Consensus 118 ~~IG~~~~I~~~~~i 132 (300)
++||++|.|+++++|
T Consensus 18 i~igd~~~i~~g~~I 32 (34)
T PF14602_consen 18 ITIGDGVIIGAGVVI 32 (34)
T ss_dssp SEE-TTEEE-TTEEE
T ss_pred CEEcCCCEECCCCEE
Confidence 344444444444433
No 183
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=97.65 E-value=1.7e-05 Score=56.25 Aligned_cols=33 Identities=61% Similarity=0.965 Sum_probs=28.3
Q ss_pred CCCCCcEEeeeceEEEecChhhhhhcCCCcccc
Q 040779 266 DVPKYSMVAGERAVLRGLNLEGLRRRGFNVTED 298 (300)
Q Consensus 266 ~v~~~~~~~G~Pa~~~~~~~~~~~~~~~~~~~~ 298 (300)
||||++++.|+||+++++|..+|++.||+.++.
T Consensus 1 DVpPf~~~~G~~a~~~GlN~vGLrR~Gfs~~~i 33 (83)
T PF13720_consen 1 DVPPFMLVAGNPARIRGLNLVGLRRRGFSKEEI 33 (83)
T ss_dssp BB-TTEEEETTTTEEEEE-HHHHHHTTS-HHHH
T ss_pred CCCCeEEecCCccEEeeeeHHHHHHcCCCHHHH
Confidence 799999999999999999999999999998764
No 184
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=86.96 E-value=2 Score=40.13 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=17.9
Q ss_pred CcEECCCCEECCCcEEeCCcEECCCcEEccCcEEcc
Q 040779 99 AAKLGDGCLLYPSSHIFGNTELGDHCILMTGAVVGD 134 (300)
Q Consensus 99 ~~~Ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~ 134 (300)
++.+..++.+++++.|. ++.++.+..|+++++|.+
T Consensus 284 nSil~~~~~vg~~svIe-~s~l~~~~~IG~~cIisG 318 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIE-HSHLGGPWSIGSNCIISG 318 (414)
T ss_pred EeEecCCceECCCCEEE-eeecCCCCEECCCCEEEC
Confidence 34444444555555544 555555555555555544
No 185
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=79.60 E-value=4 Score=38.10 Aligned_cols=34 Identities=35% Similarity=0.431 Sum_probs=20.0
Q ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCcEEe
Q 040779 81 NAIIGQGVSVGPFCTIGSAAKLGDGCLLYPSSHIF 115 (300)
Q Consensus 81 ~~~Ig~~~~I~~~~~I~~~~~Ig~~~~I~~~~~I~ 115 (300)
++.+..++.++++++|. ++.++.+..|+++|.|.
T Consensus 284 nSil~~~~~vg~~svIe-~s~l~~~~~IG~~cIis 317 (414)
T PF07959_consen 284 NSILEGGVSVGPGSVIE-HSHLGGPWSIGSNCIIS 317 (414)
T ss_pred EeEecCCceECCCCEEE-eeecCCCCEECCCCEEE
Confidence 45555556666666655 45566666666666555
No 186
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=55.40 E-value=25 Score=25.47 Aligned_cols=8 Identities=38% Similarity=0.659 Sum_probs=3.4
Q ss_pred EEccccEE
Q 040779 147 IIGHHAVV 154 (300)
Q Consensus 147 ~ig~~~~i 154 (300)
.|++++.+
T Consensus 4 ~I~~~~~i 11 (101)
T PF04519_consen 4 IIGKGTKI 11 (101)
T ss_pred EECCCCEE
Confidence 34444444
No 187
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=38.68 E-value=49 Score=34.48 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=5.5
Q ss_pred cEECCCCEECCCcEE
Q 040779 100 AKLGDGCLLYPSSHI 114 (300)
Q Consensus 100 ~~Ig~~~~I~~~~~I 114 (300)
+.|+.+..|+.+++|
T Consensus 355 s~l~~~~~ig~~~Ii 369 (974)
T PRK13412 355 SHVGEGWKLASRSII 369 (974)
T ss_pred eEecCCeEEcCCcEE
Confidence 333333333333333
No 188
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=36.33 E-value=74 Score=33.21 Aligned_cols=17 Identities=18% Similarity=0.438 Sum_probs=7.6
Q ss_pred CcEECCCcEEccCcEEc
Q 040779 117 NTELGDHCILMTGAVVG 133 (300)
Q Consensus 117 ~~~IG~~~~I~~~~~i~ 133 (300)
++.|+.+..|+++++|.
T Consensus 354 ~s~l~~~~~ig~~~Iis 370 (974)
T PRK13412 354 NSHVGEGWKLASRSIIT 370 (974)
T ss_pred eeEecCCeEEcCCcEEe
Confidence 44444444444444443
No 189
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=25.72 E-value=3.3e+02 Score=21.37 Aligned_cols=22 Identities=5% Similarity=0.163 Sum_probs=8.8
Q ss_pred CceECCCcEEcCCCEECCCCEE
Q 040779 69 SSFIHPTSIVHPNAIIGQGVSV 90 (300)
Q Consensus 69 ~~~I~~~~~I~~~~~Ig~~~~I 90 (300)
.+.|.+++.+..+.......+|
T Consensus 23 ~tli~~g~~f~G~l~f~~~l~I 44 (146)
T COG1664 23 ETLIGAGTTFKGELVFEGPLRI 44 (146)
T ss_pred CeEEecCCEEEEEEEecceEEE
Confidence 3444444444433333333333
No 190
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=24.83 E-value=3.3e+02 Score=21.39 Aligned_cols=9 Identities=11% Similarity=0.095 Sum_probs=3.6
Q ss_pred cEEccCcEE
Q 040779 124 CILMTGAVV 132 (300)
Q Consensus 124 ~~I~~~~~i 132 (300)
+.|+....+
T Consensus 58 iiv~~~g~V 66 (146)
T COG1664 58 IVVGESGRV 66 (146)
T ss_pred EEECCccEE
Confidence 444444333
Done!