BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040780
         (95 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
 pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
          Length = 597

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%)

Query: 15  DCVSKHLYSSAIFFADKVAALTNDPADVYMQAQALFLGRHYRRAFHLLNASKIVLRDLRF 74
           D + +  Y  A F  +KV  +T +P D +  AQ       Y RA  LL    +  R    
Sbjct: 93  DALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSAC 152

Query: 75  RYLAAKCLEELKEWEQCLSML 95
           RYLAA CL +L +W+  L++L
Sbjct: 153 RYLAAFCLVKLYDWQGALNLL 173


>pdb|3FNB|A Chain A, Crystal Structure Of Acylaminoacyl Peptidase Smu_737 From
           Streptococcus Mutans Ua159
 pdb|3FNB|B Chain B, Crystal Structure Of Acylaminoacyl Peptidase Smu_737 From
           Streptococcus Mutans Ua159
          Length = 405

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 3   EEEIEKLRGV-VRDCVSKHLYSSAIFFADKVAALTNDPAD 41
           E+E+E+++ V  RD +S HLY SA  F+ + A    DP D
Sbjct: 73  EDEVERVKKVGYRDLIS-HLYFSAC-FSIRAALQFTDPKD 110


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,544,852
Number of Sequences: 62578
Number of extensions: 77254
Number of successful extensions: 235
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 2
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)